AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649160 MtrunA17_Chr4g0041041 97.959 147 3 0 1 147 17 163 3.60e-103 300
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 137 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGCCATCCCATTAATTT+AGG 0.098155 4_3:+55740701 Msa0649150:intron
GGAAATGACAAAAGAGATTT+TGG 0.179922 4_3:-55742333 Msa0649160:CDS
TAATTTACACTTACTCAATT+AGG 0.187858 4_3:-55740994 Msa0649160:three_prime_UTR
CACGACATTGGTAATTATTT+AGG 0.199459 4_3:-55740590 Msa0649160:three_prime_UTR
TACTTTCAACCCTAAATTAA+TGG 0.206893 4_3:-55740711 Msa0649160:three_prime_UTR
TTTGGAGTCAGAAGTTTATA+AGG 0.209201 4_3:-55742315 Msa0649160:CDS
AGGAATTACTAAAGTTAAAA+AGG 0.212557 4_3:-55741071 Msa0649160:three_prime_UTR
TACAAAGAGAAGTCATAATT+TGG 0.219025 4_3:-55741678 Msa0649160:three_prime_UTR
TGGAATTAAGAAAGTTAAAA+AGG 0.229369 4_3:-55741091 Msa0649160:three_prime_UTR
ATCTCTTTCTGTTGGTTGTA+TGG 0.255835 4_3:+55741633 None:intergenic
GTGCTAGACAAGTTCTTATA+AGG 0.269712 4_3:-55742486 Msa0649160:intron
TCTTTGGTATTGTATGAATA+AGG 0.269837 4_3:-55741814 Msa0649160:three_prime_UTR
TTCTCCTTGTTTCAGAAAAT+AGG 0.301433 4_3:-55741378 Msa0649160:three_prime_UTR
ACCATAGATATGTTCCTCTT+TGG 0.312491 4_3:-55742021 Msa0649160:three_prime_UTR
GGATGGCCGCTATCAATTCT+TGG 0.312850 4_3:-55741969 Msa0649160:three_prime_UTR
CGTGGCTCCGCCACTGTCTT+TGG 0.315076 4_3:-55740661 Msa0649160:three_prime_UTR
AAATCAAATATATCTCTCTT+TGG 0.336694 4_3:-55741830 Msa0649160:three_prime_UTR
GGCGGAGCCACGTGTGGACT+GGG 0.339189 4_3:+55740672 Msa0649150:intron
TGAGAAGCAAAACAAGTTAC+TGG 0.341322 4_3:-55741751 Msa0649160:three_prime_UTR
AATTATGACTTCTCTTTGTA+AGG 0.341560 4_3:+55741681 None:intergenic
ATGGCCATCCCATTAATTTA+GGG 0.343992 4_3:+55740702 Msa0649150:intron
AATTTACACTTACTCAATTA+GGG 0.344272 4_3:-55740993 Msa0649160:three_prime_UTR
AAAGGTCGTGGCGTGATTGC+GGG 0.346021 4_3:-55740910 Msa0649160:three_prime_UTR
GGAGTCTCTCCAGTCCATTT+TGG 0.347401 4_3:+55742571 None:intergenic
TGGCGGAGCCACGTGTGGAC+TGG 0.352376 4_3:+55740671 Msa0649150:intron
CCTTCATCATATGCATGAAA+TGG 0.356221 4_3:+55742145 None:intergenic
AAAGCAAAAGGAATCGGTTT+GGG 0.365895 4_3:-55741174 Msa0649160:three_prime_UTR
GAACACGGTCGCGGTGTGAC+TGG 0.370911 4_3:-55740854 Msa0649160:three_prime_UTR
ACTTTCAACCCTAAATTAAT+GGG 0.372265 4_3:-55740710 Msa0649160:three_prime_UTR
TCAGCCTTCAGAAAAGAAAA+TGG 0.381420 4_3:-55740773 Msa0649160:three_prime_UTR
GAAACAGGTTGGGGATTGAT+TGG 0.383913 4_3:+55741334 None:intergenic
GCACCGACACTTTAGATTGA+TGG 0.394611 4_3:+55740495 Msa0649150:intron
ATTAAAATAAATGTTGATGC+AGG 0.396007 4_3:+55741298 None:intergenic
TTTCTGTTGGTTGTATGGTA+TGG 0.402923 4_3:+55741638 None:intergenic
GAAAGCTGGTAAGACCAAAA+TGG 0.406231 4_3:-55742585 Msa0649160:CDS
CTCAATTAGGGTTTGTGAGA+TGG 0.412218 4_3:-55740981 Msa0649160:three_prime_UTR
TTTCTCAAATGAAACAGGTT+GGG 0.417107 4_3:+55741324 None:intergenic
CTTCATAGCTACTAGCTTGA+AGG 0.422456 4_3:+55742611 None:intergenic
ACCAAAGAGGAACATATCTA+TGG 0.424022 4_3:+55742020 None:intergenic
AGAGAAGTCATAATTTGGTT+AGG 0.424623 4_3:-55741673 Msa0649160:three_prime_UTR
GGGTGTTTCTCAAATGAAAC+AGG 0.426214 4_3:+55741319 None:intergenic
GTCAGAAGTTTATAAGGAGT+TGG 0.427742 4_3:-55742309 Msa0649160:CDS
CAAAGCAAAAGGAATCGGTT+TGG 0.431298 4_3:-55741175 Msa0649160:three_prime_UTR
CGTGACCCCTTCTTCTCCTC+TGG 0.435168 4_3:+55740798 Msa0649150:CDS
GCCTGCTTATCTCTTTCTGT+TGG 0.446671 4_3:+55741625 None:intergenic
TAGTGGTGGTGATGCCATGC+GGG 0.449233 4_3:+55742698 None:intergenic
CCATTTCATGCATATGATGA+AGG 0.452780 4_3:-55742145 Msa0649160:CDS
AAAATCAAAGCAAAAGGAAT+CGG 0.457629 4_3:-55741180 Msa0649160:three_prime_UTR
TGTTGGTGCCTTTGTGGTAG+TGG 0.466508 4_3:+55742681 None:intergenic
AACACGGTCGCGGTGTGACT+GGG 0.468896 4_3:-55740853 Msa0649160:three_prime_UTR
TTCAGAGATCGCACTGAAAG+TGG 0.478596 4_3:-55740940 Msa0649160:three_prime_UTR
TTCTCAAATGAAACAGGTTG+GGG 0.484153 4_3:+55741325 None:intergenic
ATAATTACCAATGTCGTGTC+CGG 0.490785 4_3:+55740595 Msa0649150:intron
TGAATCACCAGAGGAGAAGA+AGG 0.499458 4_3:-55740805 Msa0649160:three_prime_UTR
TAATGATGAATGAATCAGAT+TGG 0.500268 4_3:-55741111 Msa0649160:three_prime_UTR
GTGTGGACTGGGGTTGGCCA+TGG 0.503733 4_3:+55740683 Msa0649150:intron
GTTTCTCAAATGAAACAGGT+TGG 0.504699 4_3:+55741323 None:intergenic
ACGCCGTGTTGGTGCCTTTG+TGG 0.510870 4_3:+55742675 None:intergenic
CAGAAAGAGATAAGCAGGCC+AGG 0.511374 4_3:-55741621 Msa0649160:three_prime_UTR
CATTCCAAAATCAAAGCAAA+AGG 0.511770 4_3:-55741186 Msa0649160:three_prime_UTR
TGGTAACTCATTATCAAGAA+AGG 0.512155 4_3:+55742040 None:intergenic
TTATACTCTATCCTCAAGCT+TGG 0.513522 4_3:-55742508 Msa0649160:CDS
GAAAGGTCGTGGCGTGATTG+CGG 0.515423 4_3:-55740911 Msa0649160:three_prime_UTR
TAGCTATGAAGAAGGAAAGC+TGG 0.521816 4_3:-55742599 Msa0649160:CDS
ACCAACAGAAAGAGATAAGC+AGG 0.522479 4_3:-55741626 Msa0649160:three_prime_UTR
TGATTGGTAGAGACAATTGT+GGG 0.525726 4_3:+55741350 None:intergenic
CCCATGGTTTCTGCTACTAA+AGG 0.526631 4_3:-55741418 Msa0649160:three_prime_UTR
GACTGGGGATAGGTGATGGA+TGG 0.527732 4_3:-55740837 Msa0649160:three_prime_UTR
CAATGTTGTTGCTCATAGCC+TGG 0.530933 4_3:+55741603 None:intergenic
TGAAGGGAATCTTACATGGC+TGG 0.540223 4_3:-55742128 Msa0649160:CDS
AGCCACGTGTGGACTGGGGT+TGG 0.545543 4_3:+55740677 Msa0649150:intron
TTCATAGCTACTAGCTTGAA+GGG 0.550261 4_3:+55742612 None:intergenic
AGCTTGAGGATAGAGTATAA+AGG 0.550336 4_3:+55742511 None:intergenic
TTAAAATAAATGTTGATGCA+GGG 0.550733 4_3:+55741299 None:intergenic
TAAAGATGAAATTACAATCA+GGG 0.551499 4_3:+55742258 None:intergenic
CTGGTAAGACCAAAATGGAC+TGG 0.551537 4_3:-55742580 Msa0649160:CDS
GACAGTGGCGGAGCCACGTG+TGG 0.554617 4_3:+55740666 Msa0649150:intron
GCTCGAACCATGCGAGAGAG+AGG 0.558206 4_3:+55742550 None:intergenic
GTGTGACTGGGGATAGGTGA+TGG 0.560331 4_3:-55740841 Msa0649160:three_prime_UTR
TTGAAGGGAGGTTGTTGTGT+CGG 0.560578 4_3:+55742627 None:intergenic
AATCAGGGTATACTAAAGAC+TGG 0.564057 4_3:+55742273 None:intergenic
TTGATTGGTAGAGACAATTG+TGG 0.564988 4_3:+55741349 None:intergenic
ATATGTTCCTCTTTGGTCAG+TGG 0.566687 4_3:-55742014 Msa0649160:three_prime_UTR
GTAGAATCTCATTGTCGAGA+TGG 0.571064 4_3:+55741450 None:intergenic
CAAGCTAGTAGCTATGAAGA+AGG 0.571992 4_3:-55742607 Msa0649160:CDS
ACAAACACCGGACACGACAT+TGG 0.574835 4_3:-55740602 Msa0649160:three_prime_UTR
CATTTCATGCATATGATGAA+GGG 0.577373 4_3:-55742144 Msa0649160:CDS
GTCGCGGTGTGACTGGGGAT+AGG 0.578240 4_3:-55740847 Msa0649160:three_prime_UTR
AGAGACTCCTCTCTCTCGCA+TGG 0.582497 4_3:-55742557 Msa0649160:CDS
TCCTTTAGTAGCAGAAACCA+TGG 0.588427 4_3:+55741417 None:intergenic
CTAAATTAATGGGATGGCCA+TGG 0.589189 4_3:-55740700 Msa0649160:three_prime_UTR
TCAACCCTAAATTAATGGGA+TGG 0.589233 4_3:-55740706 Msa0649160:three_prime_UTR
ATTCTACCATCGCAGACCCA+TGG 0.590296 4_3:-55741434 Msa0649160:three_prime_UTR
ATGATGAAGGGAATCTTACA+TGG 0.591019 4_3:-55742132 Msa0649160:CDS
GATGGCGACGAACACGGTCG+CGG 0.591631 4_3:-55740863 Msa0649160:three_prime_UTR
TGTTCCTCTTTGGTCAGTGG+CGG 0.595445 4_3:-55742011 Msa0649160:three_prime_UTR
TGGGGATAGGTGATGGATGG+AGG 0.596822 4_3:-55740834 Msa0649160:three_prime_UTR
GAATCACCAGAGGAGAAGAA+GGG 0.601012 4_3:-55740804 Msa0649160:three_prime_UTR
TTTCGACAGAGAGGTAGAGA+TGG 0.604233 4_3:-55740881 Msa0649160:three_prime_UTR
ACCACCACGTGACGCCGTGT+TGG 0.604335 4_3:+55742664 None:intergenic
GGCCAACCCCAGTCCACACG+TGG 0.606126 4_3:-55740679 Msa0649160:three_prime_UTR
GGTAGAGATGGCGACGAACA+CGG 0.608414 4_3:-55740869 Msa0649160:three_prime_UTR
TGGATGCTGAGACAGTAGTA+AGG 0.608945 4_3:+55741470 None:intergenic
TCAGAGATCGCACTGAAAGT+GGG 0.610938 4_3:-55740939 Msa0649160:three_prime_UTR
TGGTGCCTTTGTGGTAGTGG+TGG 0.612166 4_3:+55742684 None:intergenic
CAGAAACCATGGGTCTGCGA+TGG 0.612392 4_3:+55741428 None:intergenic
AGTGGGTAACTGAAAGGTCG+TGG 0.613019 4_3:-55740922 Msa0649160:three_prime_UTR
ACTGAAAGTGGGTAACTGAA+AGG 0.616082 4_3:-55740928 Msa0649160:three_prime_UTR
ACACGGTCGCGGTGTGACTG+GGG 0.620854 4_3:-55740852 Msa0649160:three_prime_UTR
AGTGGTGGTGATGCCATGCG+GGG 0.626878 4_3:+55742699 None:intergenic
CCACATGTGTCGGTGTCGTG+TGG 0.628120 4_3:-55740540 Msa0649160:three_prime_UTR
GCGGAGCCACGTGTGGACTG+GGG 0.628801 4_3:+55740673 Msa0649150:intron
GGCACCAACACGGCGTCACG+TGG 0.633755 4_3:-55742668 Msa0649160:CDS
TCACGTGGTGGTTCACGCTG+CGG 0.638308 4_3:-55742653 Msa0649160:CDS
GCGGGGAGATTAATGATGAG+AGG 0.645229 4_3:+55742716 None:intergenic
CTTGTCTAGCACCAAGCTTG+AGG 0.645836 4_3:+55742497 None:intergenic
CCTTTAGTAGCAGAAACCAT+GGG 0.648557 4_3:+55741418 None:intergenic
GTAGTGGTGGTGATGCCATG+CGG 0.652417 4_3:+55742697 None:intergenic
ACACCATCAATCTAAAGTGT+CGG 0.655186 4_3:-55740498 Msa0649160:three_prime_UTR
TCATCATTAATCTCCCCGCA+TGG 0.655400 4_3:-55742712 Msa0649160:CDS
ACCAACACGGCGTCACGTGG+TGG 0.659578 4_3:-55742665 Msa0649160:CDS
CCACACGACACCGACACATG+TGG 0.661828 4_3:+55740540 Msa0649150:intron
GGCTCCGCCACTGACCAAAG+AGG 0.667590 4_3:+55742007 None:intergenic
AATCACCAGAGGAGAAGAAG+GGG 0.668907 4_3:-55740803 Msa0649160:three_prime_UTR
TGTTATTTAACCACATGTGT+CGG 0.671772 4_3:-55740550 Msa0649160:three_prime_UTR
AAATGTGTTGGGAAGAACAA+CGG 0.672122 4_3:+55740465 Msa0649150:intron
CATCACCACCACTACCACAA+AGG 0.675272 4_3:-55742689 Msa0649160:CDS
GTGTGGACACTGACACATGT+TGG 0.676828 4_3:-55740523 Msa0649160:three_prime_UTR
TGAAGCATTGACACAAACAC+CGG 0.681063 4_3:-55740614 Msa0649160:three_prime_UTR
GTTGGTTGTATGGTATGGAA+AGG 0.681953 4_3:+55741643 None:intergenic
CTACCACAAAGGCACCAACA+CGG 0.688875 4_3:-55742678 Msa0649160:CDS
GGGCTTCAATTTCGACAGAG+AGG 0.697977 4_3:-55740890 Msa0649160:three_prime_UTR
TCAACTACCAAAGACAGTGG+CGG 0.702577 4_3:+55740654 Msa0649150:intron
ATAGCTACTAGCTTGAAGGG+AGG 0.713336 4_3:+55742615 None:intergenic
AATTCAACTACCAAAGACAG+TGG 0.718095 4_3:+55740651 Msa0649150:intron
GAAACTGGAAGTGCAAATTG+TGG 0.722800 4_3:+55742804 None:intergenic
AGGTCGCACTGAATCACCAG+AGG 0.727478 4_3:-55740814 Msa0649160:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTACTTTTCTTTTGTT+TGG + chr4_3:55742268-55742287 None:intergenic 15.0%
!!! TAAATTACTTTTCTTTTGTT+TGG + chr4_3:55742268-55742287 None:intergenic 15.0%
!! TAAAGATGAAATTACAATCA+GGG + chr4_3:55741020-55741039 None:intergenic 20.0%
!!! TTTTTCTCAATGTTAATGAA+TGG - chr4_3:55741197-55741216 Msa0649160:three_prime_UTR 20.0%
!! AAATCAAATATATCTCTCTT+TGG - chr4_3:55741445-55741464 Msa0649160:three_prime_UTR 20.0%
!!! ATGTATTTTTTTGACAGTAA+AGG - chr4_3:55741547-55741566 Msa0649160:three_prime_UTR 20.0%
!! TTAAAATAAATGTTGATGCA+GGG + chr4_3:55741979-55741998 None:intergenic 20.0%
!! ATTAAAATAAATGTTGATGC+AGG + chr4_3:55741980-55741999 None:intergenic 20.0%
!! TGGAATTAAGAAAGTTAAAA+AGG - chr4_3:55742184-55742203 Msa0649160:intron 20.0%
!! AGGAATTACTAAAGTTAAAA+AGG - chr4_3:55742204-55742223 Msa0649160:intron 20.0%
!! ACTAAAGTTAAAAAGGATTA+AGG - chr4_3:55742211-55742230 Msa0649160:intron 20.0%
!! TAATTTACACTTACTCAATT+AGG - chr4_3:55742281-55742300 Msa0649160:CDS 20.0%
!! AATTTACACTTACTCAATTA+GGG - chr4_3:55742282-55742301 Msa0649160:CDS 20.0%
!! TAAAGATGAAATTACAATCA+GGG + chr4_3:55741020-55741039 None:intergenic 20.0%
!!! TTTTTCTCAATGTTAATGAA+TGG - chr4_3:55741197-55741216 Msa0649160:three_prime_UTR 20.0%
!! AAATCAAATATATCTCTCTT+TGG - chr4_3:55741445-55741464 Msa0649160:three_prime_UTR 20.0%
!!! ATGTATTTTTTTGACAGTAA+AGG - chr4_3:55741547-55741566 Msa0649160:three_prime_UTR 20.0%
!! TTAAAATAAATGTTGATGCA+GGG + chr4_3:55741979-55741998 None:intergenic 20.0%
!! ATTAAAATAAATGTTGATGC+AGG + chr4_3:55741980-55741999 None:intergenic 20.0%
!! TGGAATTAAGAAAGTTAAAA+AGG - chr4_3:55742184-55742203 Msa0649160:intron 20.0%
!! AGGAATTACTAAAGTTAAAA+AGG - chr4_3:55742204-55742223 Msa0649160:intron 20.0%
!! ACTAAAGTTAAAAAGGATTA+AGG - chr4_3:55742211-55742230 Msa0649160:intron 20.0%
!! TAATTTACACTTACTCAATT+AGG - chr4_3:55742281-55742300 Msa0649160:CDS 20.0%
!! AATTTACACTTACTCAATTA+GGG - chr4_3:55742282-55742301 Msa0649160:CDS 20.0%
! GTAAAGATGAAATTACAATC+AGG + chr4_3:55741021-55741040 None:intergenic 25.0%
! TCTTTGGTATTGTATGAATA+AGG - chr4_3:55741461-55741480 Msa0649160:three_prime_UTR 25.0%
! AATTATGACTTCTCTTTGTA+AGG + chr4_3:55741597-55741616 None:intergenic 25.0%
! TACAAAGAGAAGTCATAATT+TGG - chr4_3:55741597-55741616 Msa0649160:three_prime_UTR 25.0%
!!! TTTGATTTTGGAATGTTTTG+GGG + chr4_3:55742084-55742103 None:intergenic 25.0%
!!! CTTTGATTTTGGAATGTTTT+GGG + chr4_3:55742085-55742104 None:intergenic 25.0%
! AAAATCAAAGCAAAAGGAAT+CGG - chr4_3:55742095-55742114 Msa0649160:exon 25.0%
! TAATGATGAATGAATCAGAT+TGG - chr4_3:55742164-55742183 Msa0649160:intron 25.0%
!!! TTTGGTAATCATCTTTTGTT+TGG + chr4_3:55742250-55742269 None:intergenic 25.0%
!! TGTAATTTTCAAATTAGCTC+AGG - chr4_3:55742531-55742550 Msa0649160:CDS 25.0%
!! GTAATTTTCAAATTAGCTCA+GGG - chr4_3:55742532-55742551 Msa0649160:CDS 25.0%
!! TAATTTTCAAATTAGCTCAG+GGG - chr4_3:55742533-55742552 Msa0649160:CDS 25.0%
! TACTTTCAACCCTAAATTAA+TGG - chr4_3:55742564-55742583 Msa0649160:CDS 25.0%
! ACTTTCAACCCTAAATTAAT+GGG - chr4_3:55742565-55742584 Msa0649160:CDS 25.0%
! GTAAAGATGAAATTACAATC+AGG + chr4_3:55741021-55741040 None:intergenic 25.0%
! TCTTTGGTATTGTATGAATA+AGG - chr4_3:55741461-55741480 Msa0649160:three_prime_UTR 25.0%
! AATTATGACTTCTCTTTGTA+AGG + chr4_3:55741597-55741616 None:intergenic 25.0%
! TACAAAGAGAAGTCATAATT+TGG - chr4_3:55741597-55741616 Msa0649160:three_prime_UTR 25.0%
!!! TTTGATTTTGGAATGTTTTG+GGG + chr4_3:55742084-55742103 None:intergenic 25.0%
!!! CTTTGATTTTGGAATGTTTT+GGG + chr4_3:55742085-55742104 None:intergenic 25.0%
! AAAATCAAAGCAAAAGGAAT+CGG - chr4_3:55742095-55742114 Msa0649160:exon 25.0%
! TAATGATGAATGAATCAGAT+TGG - chr4_3:55742164-55742183 Msa0649160:intron 25.0%
!!! TTTGGTAATCATCTTTTGTT+TGG + chr4_3:55742250-55742269 None:intergenic 25.0%
!! TGTAATTTTCAAATTAGCTC+AGG - chr4_3:55742531-55742550 Msa0649160:CDS 25.0%
!! GTAATTTTCAAATTAGCTCA+GGG - chr4_3:55742532-55742551 Msa0649160:CDS 25.0%
!! TAATTTTCAAATTAGCTCAG+GGG - chr4_3:55742533-55742552 Msa0649160:CDS 25.0%
! TACTTTCAACCCTAAATTAA+TGG - chr4_3:55742564-55742583 Msa0649160:CDS 25.0%
! ACTTTCAACCCTAAATTAAT+GGG - chr4_3:55742565-55742584 Msa0649160:CDS 25.0%
TAGACAAGTTCTTATAAGGT+TGG - chr4_3:55740793-55740812 Msa0649160:three_prime_UTR 30.0%
TTGCACAACAAGTTTCAATA+TGG - chr4_3:55740850-55740869 Msa0649160:three_prime_UTR 30.0%
! GGAAATGACAAAAGAGATTT+TGG - chr4_3:55740942-55740961 Msa0649160:three_prime_UTR 30.0%
! TTTGGAGTCAGAAGTTTATA+AGG - chr4_3:55740960-55740979 Msa0649160:three_prime_UTR 30.0%
!! CATCTTTACCTTTCACTTTT+TGG - chr4_3:55741032-55741051 Msa0649160:three_prime_UTR 30.0%
AGAAAAGACCAAAAAGTGAA+AGG + chr4_3:55741043-55741062 None:intergenic 30.0%
CATTTCATGCATATGATGAA+GGG - chr4_3:55741131-55741150 Msa0649160:three_prime_UTR 30.0%
TGGTAACTCATTATCAAGAA+AGG + chr4_3:55741238-55741257 None:intergenic 30.0%
! TTTGAAGCAAAAAAGTCAAG+AGG + chr4_3:55741357-55741376 None:intergenic 30.0%
AGAGAAGTCATAATTTGGTT+AGG - chr4_3:55741602-55741621 Msa0649160:three_prime_UTR 30.0%
! ACAGTAGTAAGGTCTTTTTA+TGG + chr4_3:55741797-55741816 None:intergenic 30.0%
! TTCTCCTTGTTTCAGAAAAT+AGG - chr4_3:55741897-55741916 Msa0649160:three_prime_UTR 30.0%
!!! TTGTCCTATTTTCTGAAACA+AGG + chr4_3:55741904-55741923 None:intergenic 30.0%
TTTCTCAAATGAAACAGGTT+GGG + chr4_3:55741954-55741973 None:intergenic 30.0%
!!! GCTTTGATTTTGGAATGTTT+TGG + chr4_3:55742086-55742105 None:intergenic 30.0%
CATTCCAAAATCAAAGCAAA+AGG - chr4_3:55742089-55742108 Msa0649160:three_prime_UTR 30.0%
!! GATTCCTTTTGCTTTGATTT+TGG + chr4_3:55742096-55742115 None:intergenic 30.0%
! CACGACATTGGTAATTATTT+AGG - chr4_3:55742685-55742704 Msa0649160:CDS 30.0%
! TGTTATTTAACCACATGTGT+CGG - chr4_3:55742725-55742744 Msa0649160:CDS 30.0%
TAGACAAGTTCTTATAAGGT+TGG - chr4_3:55740793-55740812 Msa0649160:three_prime_UTR 30.0%
TTGCACAACAAGTTTCAATA+TGG - chr4_3:55740850-55740869 Msa0649160:three_prime_UTR 30.0%
! GGAAATGACAAAAGAGATTT+TGG - chr4_3:55740942-55740961 Msa0649160:three_prime_UTR 30.0%
! TTTGGAGTCAGAAGTTTATA+AGG - chr4_3:55740960-55740979 Msa0649160:three_prime_UTR 30.0%
!! CATCTTTACCTTTCACTTTT+TGG - chr4_3:55741032-55741051 Msa0649160:three_prime_UTR 30.0%
AGAAAAGACCAAAAAGTGAA+AGG + chr4_3:55741043-55741062 None:intergenic 30.0%
CATTTCATGCATATGATGAA+GGG - chr4_3:55741131-55741150 Msa0649160:three_prime_UTR 30.0%
TGGTAACTCATTATCAAGAA+AGG + chr4_3:55741238-55741257 None:intergenic 30.0%
! TTTGAAGCAAAAAAGTCAAG+AGG + chr4_3:55741357-55741376 None:intergenic 30.0%
AGAGAAGTCATAATTTGGTT+AGG - chr4_3:55741602-55741621 Msa0649160:three_prime_UTR 30.0%
! ACAGTAGTAAGGTCTTTTTA+TGG + chr4_3:55741797-55741816 None:intergenic 30.0%
! TTCTCCTTGTTTCAGAAAAT+AGG - chr4_3:55741897-55741916 Msa0649160:three_prime_UTR 30.0%
!!! TTGTCCTATTTTCTGAAACA+AGG + chr4_3:55741904-55741923 None:intergenic 30.0%
TTTCTCAAATGAAACAGGTT+GGG + chr4_3:55741954-55741973 None:intergenic 30.0%
!!! GCTTTGATTTTGGAATGTTT+TGG + chr4_3:55742086-55742105 None:intergenic 30.0%
CATTCCAAAATCAAAGCAAA+AGG - chr4_3:55742089-55742108 Msa0649160:three_prime_UTR 30.0%
!! GATTCCTTTTGCTTTGATTT+TGG + chr4_3:55742096-55742115 None:intergenic 30.0%
! CACGACATTGGTAATTATTT+AGG - chr4_3:55742685-55742704 Msa0649160:CDS 30.0%
! TGTTATTTAACCACATGTGT+CGG - chr4_3:55742725-55742744 Msa0649160:CDS 30.0%
! TTCATAGCTACTAGCTTGAA+GGG + chr4_3:55740666-55740685 Msa0649150:intron 35.0%
AGCTTGAGGATAGAGTATAA+AGG + chr4_3:55740767-55740786 Msa0649150:intron 35.0%
TTATACTCTATCCTCAAGCT+TGG - chr4_3:55740767-55740786 Msa0649160:three_prime_UTR 35.0%
GTGCTAGACAAGTTCTTATA+AGG - chr4_3:55740789-55740808 Msa0649160:three_prime_UTR 35.0%
!!! GGTTGATCAGTGTGTTTTTT+TGG - chr4_3:55740871-55740890 Msa0649160:three_prime_UTR 35.0%
CTGAGAAAAACAACATACCT+TGG - chr4_3:55740917-55740936 Msa0649160:three_prime_UTR 35.0%
AGAAAAACAACATACCTTGG+AGG - chr4_3:55740920-55740939 Msa0649160:three_prime_UTR 35.0%
GAAAAACAACATACCTTGGA+GGG - chr4_3:55740921-55740940 Msa0649160:three_prime_UTR 35.0%
GTCAGAAGTTTATAAGGAGT+TGG - chr4_3:55740966-55740985 Msa0649160:three_prime_UTR 35.0%
AATCAGGGTATACTAAAGAC+TGG + chr4_3:55741005-55741024 None:intergenic 35.0%
GCATGTTTCAACTGTATTGA+TGG - chr4_3:55741071-55741090 Msa0649160:three_prime_UTR 35.0%
! GTTTCAACTGTATTGATGGA+AGG - chr4_3:55741075-55741094 Msa0649160:three_prime_UTR 35.0%
CCTTCATCATATGCATGAAA+TGG + chr4_3:55741133-55741152 None:intergenic 35.0%
CCATTTCATGCATATGATGA+AGG - chr4_3:55741130-55741149 Msa0649160:three_prime_UTR 35.0%
ATGATGAAGGGAATCTTACA+TGG - chr4_3:55741143-55741162 Msa0649160:three_prime_UTR 35.0%
ACCATAGATATGTTCCTCTT+TGG - chr4_3:55741254-55741273 Msa0649160:three_prime_UTR 35.0%
ACCAAAGAGGAACATATCTA+TGG + chr4_3:55741258-55741277 None:intergenic 35.0%
!!! GGAGCCAGACAAATTTTTTT+GGG - chr4_3:55741285-55741304 Msa0649160:three_prime_UTR 35.0%
CCATCCCAAAAAAATTTGTC+TGG + chr4_3:55741292-55741311 None:intergenic 35.0%
!!! CCAGACAAATTTTTTTGGGA+TGG - chr4_3:55741289-55741308 Msa0649160:three_prime_UTR 35.0%
! CGTTTTCCAAGAATTGATAG+CGG + chr4_3:55741315-55741334 None:intergenic 35.0%
TGAGAAGCAAAACAAGTTAC+TGG - chr4_3:55741524-55741543 Msa0649160:three_prime_UTR 35.0%
! TTTCTGTTGGTTGTATGGTA+TGG + chr4_3:55741640-55741659 None:intergenic 35.0%
! ATCTCTTTCTGTTGGTTGTA+TGG + chr4_3:55741645-55741664 None:intergenic 35.0%
TGATTGGTAGAGACAATTGT+GGG + chr4_3:55741928-55741947 None:intergenic 35.0%
TTGATTGGTAGAGACAATTG+TGG + chr4_3:55741929-55741948 None:intergenic 35.0%
TTCTCAAATGAAACAGGTTG+GGG + chr4_3:55741953-55741972 None:intergenic 35.0%
GTTTCTCAAATGAAACAGGT+TGG + chr4_3:55741955-55741974 None:intergenic 35.0%
! AAAGCAAAAGGAATCGGTTT+GGG - chr4_3:55742101-55742120 Msa0649160:exon 35.0%
TCAGCCTTCAGAAAAGAAAA+TGG - chr4_3:55742502-55742521 Msa0649160:CDS 35.0%
!!! CATGCCATTTTCTTTTCTGA+AGG + chr4_3:55742509-55742528 None:intergenic 35.0%
TCAACCCTAAATTAATGGGA+TGG - chr4_3:55742569-55742588 Msa0649160:CDS 35.0%
ATGGCCATCCCATTAATTTA+GGG + chr4_3:55742576-55742595 None:intergenic 35.0%
AATTCAACTACCAAAGACAG+TGG + chr4_3:55742627-55742646 None:intergenic 35.0%
ATAATTACCAATGTCGTGTC+CGG + chr4_3:55742683-55742702 None:intergenic 35.0%
! ACACCATCAATCTAAAGTGT+CGG - chr4_3:55742777-55742796 Msa0649160:intron 35.0%
! AAACTGGAAGTGCAAATTGT+GGG + chr4_3:55740473-55740492 Msa0649150:intron 35.0%
! TTCATAGCTACTAGCTTGAA+GGG + chr4_3:55740666-55740685 Msa0649150:intron 35.0%
AGCTTGAGGATAGAGTATAA+AGG + chr4_3:55740767-55740786 Msa0649150:intron 35.0%
TTATACTCTATCCTCAAGCT+TGG - chr4_3:55740767-55740786 Msa0649160:three_prime_UTR 35.0%
GTGCTAGACAAGTTCTTATA+AGG - chr4_3:55740789-55740808 Msa0649160:three_prime_UTR 35.0%
!!! GGTTGATCAGTGTGTTTTTT+TGG - chr4_3:55740871-55740890 Msa0649160:three_prime_UTR 35.0%
CTGAGAAAAACAACATACCT+TGG - chr4_3:55740917-55740936 Msa0649160:three_prime_UTR 35.0%
AGAAAAACAACATACCTTGG+AGG - chr4_3:55740920-55740939 Msa0649160:three_prime_UTR 35.0%
GAAAAACAACATACCTTGGA+GGG - chr4_3:55740921-55740940 Msa0649160:three_prime_UTR 35.0%
GTCAGAAGTTTATAAGGAGT+TGG - chr4_3:55740966-55740985 Msa0649160:three_prime_UTR 35.0%
AATCAGGGTATACTAAAGAC+TGG + chr4_3:55741005-55741024 None:intergenic 35.0%
GCATGTTTCAACTGTATTGA+TGG - chr4_3:55741071-55741090 Msa0649160:three_prime_UTR 35.0%
! GTTTCAACTGTATTGATGGA+AGG - chr4_3:55741075-55741094 Msa0649160:three_prime_UTR 35.0%
CCTTCATCATATGCATGAAA+TGG + chr4_3:55741133-55741152 None:intergenic 35.0%
CCATTTCATGCATATGATGA+AGG - chr4_3:55741130-55741149 Msa0649160:three_prime_UTR 35.0%
ATGATGAAGGGAATCTTACA+TGG - chr4_3:55741143-55741162 Msa0649160:three_prime_UTR 35.0%
ACCATAGATATGTTCCTCTT+TGG - chr4_3:55741254-55741273 Msa0649160:three_prime_UTR 35.0%
ACCAAAGAGGAACATATCTA+TGG + chr4_3:55741258-55741277 None:intergenic 35.0%
!!! GGAGCCAGACAAATTTTTTT+GGG - chr4_3:55741285-55741304 Msa0649160:three_prime_UTR 35.0%
CCATCCCAAAAAAATTTGTC+TGG + chr4_3:55741292-55741311 None:intergenic 35.0%
!!! CCAGACAAATTTTTTTGGGA+TGG - chr4_3:55741289-55741308 Msa0649160:three_prime_UTR 35.0%
! CGTTTTCCAAGAATTGATAG+CGG + chr4_3:55741315-55741334 None:intergenic 35.0%
TGAGAAGCAAAACAAGTTAC+TGG - chr4_3:55741524-55741543 Msa0649160:three_prime_UTR 35.0%
! TTTCTGTTGGTTGTATGGTA+TGG + chr4_3:55741640-55741659 None:intergenic 35.0%
! ATCTCTTTCTGTTGGTTGTA+TGG + chr4_3:55741645-55741664 None:intergenic 35.0%
TGATTGGTAGAGACAATTGT+GGG + chr4_3:55741928-55741947 None:intergenic 35.0%
TTGATTGGTAGAGACAATTG+TGG + chr4_3:55741929-55741948 None:intergenic 35.0%
TTCTCAAATGAAACAGGTTG+GGG + chr4_3:55741953-55741972 None:intergenic 35.0%
GTTTCTCAAATGAAACAGGT+TGG + chr4_3:55741955-55741974 None:intergenic 35.0%
! AAAGCAAAAGGAATCGGTTT+GGG - chr4_3:55742101-55742120 Msa0649160:exon 35.0%
TCAGCCTTCAGAAAAGAAAA+TGG - chr4_3:55742502-55742521 Msa0649160:CDS 35.0%
!!! CATGCCATTTTCTTTTCTGA+AGG + chr4_3:55742509-55742528 None:intergenic 35.0%
TCAACCCTAAATTAATGGGA+TGG - chr4_3:55742569-55742588 Msa0649160:CDS 35.0%
ATGGCCATCCCATTAATTTA+GGG + chr4_3:55742576-55742595 None:intergenic 35.0%
AATTCAACTACCAAAGACAG+TGG + chr4_3:55742627-55742646 None:intergenic 35.0%
ATAATTACCAATGTCGTGTC+CGG + chr4_3:55742683-55742702 None:intergenic 35.0%
! ACACCATCAATCTAAAGTGT+CGG - chr4_3:55742777-55742796 Msa0649160:intron 35.0%
! GAAACTGGAAGTGCAAATTG+TGG + chr4_3:55740474-55740493 Msa0649150:intron 40.0%
! CTTCATAGCTACTAGCTTGA+AGG + chr4_3:55740667-55740686 Msa0649150:intron 40.0%
CAAGCTAGTAGCTATGAAGA+AGG - chr4_3:55740668-55740687 Msa0649160:three_prime_UTR 40.0%
TAGCTATGAAGAAGGAAAGC+TGG - chr4_3:55740676-55740695 Msa0649160:three_prime_UTR 40.0%
GAAAGCTGGTAAGACCAAAA+TGG - chr4_3:55740690-55740709 Msa0649160:three_prime_UTR 40.0%
AGCAAAGTGAGTAGAAGCAA+TGG + chr4_3:55740823-55740842 Msa0649150:CDS 40.0%
!! TCTTTTGTCATTTCCCTCCA+AGG + chr4_3:55740937-55740956 Msa0649150:CDS 40.0%
ATATGTTCCTCTTTGGTCAG+TGG - chr4_3:55741261-55741280 Msa0649160:three_prime_UTR 40.0%
!!! CGGAGCCAGACAAATTTTTT+TGG - chr4_3:55741284-55741303 Msa0649160:three_prime_UTR 40.0%
GTTGGTTGTATGGTATGGAA+AGG + chr4_3:55741635-55741654 None:intergenic 40.0%
ACCAACAGAAAGAGATAAGC+AGG - chr4_3:55741649-55741668 Msa0649160:three_prime_UTR 40.0%
GTAGAATCTCATTGTCGAGA+TGG + chr4_3:55741828-55741847 None:intergenic 40.0%
CCTTTAGTAGCAGAAACCAT+GGG + chr4_3:55741860-55741879 None:intergenic 40.0%
TCCTTTAGTAGCAGAAACCA+TGG + chr4_3:55741861-55741880 None:intergenic 40.0%
GGGTGTTTCTCAAATGAAAC+AGG + chr4_3:55741959-55741978 None:intergenic 40.0%
!!! TTTTGGGGTTGTGTACGTTT+TGG + chr4_3:55742069-55742088 None:intergenic 40.0%
CAAAGCAAAAGGAATCGGTT+TGG - chr4_3:55742100-55742119 Msa0649160:exon 40.0%
CTCAATTAGGGTTTGTGAGA+TGG - chr4_3:55742294-55742313 Msa0649160:CDS 40.0%
ACTGAAAGTGGGTAACTGAA+AGG - chr4_3:55742347-55742366 Msa0649160:CDS 40.0%
CATGGCCATCCCATTAATTT+AGG + chr4_3:55742577-55742596 None:intergenic 40.0%
CTAAATTAATGGGATGGCCA+TGG - chr4_3:55742575-55742594 Msa0649160:CDS 40.0%
!! TGAAGCATTGACACAAACAC+CGG - chr4_3:55742661-55742680 Msa0649160:CDS 40.0%
! GAAACTGGAAGTGCAAATTG+TGG + chr4_3:55740474-55740493 Msa0649150:intron 40.0%
! CTTCATAGCTACTAGCTTGA+AGG + chr4_3:55740667-55740686 Msa0649150:intron 40.0%
CAAGCTAGTAGCTATGAAGA+AGG - chr4_3:55740668-55740687 Msa0649160:three_prime_UTR 40.0%
TAGCTATGAAGAAGGAAAGC+TGG - chr4_3:55740676-55740695 Msa0649160:three_prime_UTR 40.0%
GAAAGCTGGTAAGACCAAAA+TGG - chr4_3:55740690-55740709 Msa0649160:three_prime_UTR 40.0%
AGCAAAGTGAGTAGAAGCAA+TGG + chr4_3:55740823-55740842 Msa0649150:CDS 40.0%
!! TCTTTTGTCATTTCCCTCCA+AGG + chr4_3:55740937-55740956 Msa0649150:CDS 40.0%
ATATGTTCCTCTTTGGTCAG+TGG - chr4_3:55741261-55741280 Msa0649160:three_prime_UTR 40.0%
!!! CGGAGCCAGACAAATTTTTT+TGG - chr4_3:55741284-55741303 Msa0649160:three_prime_UTR 40.0%
GTTGGTTGTATGGTATGGAA+AGG + chr4_3:55741635-55741654 None:intergenic 40.0%
ACCAACAGAAAGAGATAAGC+AGG - chr4_3:55741649-55741668 Msa0649160:three_prime_UTR 40.0%
GTAGAATCTCATTGTCGAGA+TGG + chr4_3:55741828-55741847 None:intergenic 40.0%
CCTTTAGTAGCAGAAACCAT+GGG + chr4_3:55741860-55741879 None:intergenic 40.0%
TCCTTTAGTAGCAGAAACCA+TGG + chr4_3:55741861-55741880 None:intergenic 40.0%
GGGTGTTTCTCAAATGAAAC+AGG + chr4_3:55741959-55741978 None:intergenic 40.0%
!!! TTTTGGGGTTGTGTACGTTT+TGG + chr4_3:55742069-55742088 None:intergenic 40.0%
CAAAGCAAAAGGAATCGGTT+TGG - chr4_3:55742100-55742119 Msa0649160:exon 40.0%
CTCAATTAGGGTTTGTGAGA+TGG - chr4_3:55742294-55742313 Msa0649160:CDS 40.0%
ACTGAAAGTGGGTAACTGAA+AGG - chr4_3:55742347-55742366 Msa0649160:CDS 40.0%
CATGGCCATCCCATTAATTT+AGG + chr4_3:55742577-55742596 None:intergenic 40.0%
CTAAATTAATGGGATGGCCA+TGG - chr4_3:55742575-55742594 Msa0649160:CDS 40.0%
!! TGAAGCATTGACACAAACAC+CGG - chr4_3:55742661-55742680 Msa0649160:CDS 40.0%
TGTGTGTGTGTGTGTGAAAC+TGG + chr4_3:55740489-55740508 Msa0649150:intron 45.0%
ACACACACACACACACACAA+TGG - chr4_3:55740514-55740533 Msa0649160:three_prime_UTR 45.0%
TCATCATTAATCTCCCCGCA+TGG - chr4_3:55740563-55740582 Msa0649160:three_prime_UTR 45.0%
TTGAAGGGAGGTTGTTGTGT+CGG + chr4_3:55740651-55740670 Msa0649150:intron 45.0%
! ATAGCTACTAGCTTGAAGGG+AGG + chr4_3:55740663-55740682 Msa0649150:intron 45.0%
CTGGTAAGACCAAAATGGAC+TGG - chr4_3:55740695-55740714 Msa0649160:three_prime_UTR 45.0%
TGAAGGGAATCTTACATGGC+TGG - chr4_3:55741147-55741166 Msa0649160:three_prime_UTR 45.0%
GCCTGCTTATCTCTTTCTGT+TGG + chr4_3:55741653-55741672 None:intergenic 45.0%
CAATGTTGTTGCTCATAGCC+TGG + chr4_3:55741675-55741694 None:intergenic 45.0%
TGGATGCTGAGACAGTAGTA+AGG + chr4_3:55741808-55741827 None:intergenic 45.0%
CCCATGGTTTCTGCTACTAA+AGG - chr4_3:55741857-55741876 Msa0649160:three_prime_UTR 45.0%
! GAAACAGGTTGGGGATTGAT+TGG + chr4_3:55741944-55741963 None:intergenic 45.0%
TTCAGAGATCGCACTGAAAG+TGG - chr4_3:55742335-55742354 Msa0649160:CDS 45.0%
TCAGAGATCGCACTGAAAGT+GGG - chr4_3:55742336-55742355 Msa0649160:CDS 45.0%
TTTCGACAGAGAGGTAGAGA+TGG - chr4_3:55742394-55742413 Msa0649160:intron 45.0%
TGAATCACCAGAGGAGAAGA+AGG - chr4_3:55742470-55742489 Msa0649160:intron 45.0%
GAATCACCAGAGGAGAAGAA+GGG - chr4_3:55742471-55742490 Msa0649160:intron 45.0%
AATCACCAGAGGAGAAGAAG+GGG - chr4_3:55742472-55742491 Msa0649160:intron 45.0%
TCAACTACCAAAGACAGTGG+CGG + chr4_3:55742624-55742643 None:intergenic 45.0%
! GCACCGACACTTTAGATTGA+TGG + chr4_3:55742783-55742802 None:intergenic 45.0%
TGTGTGTGTGTGTGTGAAAC+TGG + chr4_3:55740489-55740508 Msa0649150:intron 45.0%
ACACACACACACACACACAA+TGG - chr4_3:55740514-55740533 Msa0649160:three_prime_UTR 45.0%
TCATCATTAATCTCCCCGCA+TGG - chr4_3:55740563-55740582 Msa0649160:three_prime_UTR 45.0%
TTGAAGGGAGGTTGTTGTGT+CGG + chr4_3:55740651-55740670 Msa0649150:intron 45.0%
! ATAGCTACTAGCTTGAAGGG+AGG + chr4_3:55740663-55740682 Msa0649150:intron 45.0%
CTGGTAAGACCAAAATGGAC+TGG - chr4_3:55740695-55740714 Msa0649160:three_prime_UTR 45.0%
TGAAGGGAATCTTACATGGC+TGG - chr4_3:55741147-55741166 Msa0649160:three_prime_UTR 45.0%
GCCTGCTTATCTCTTTCTGT+TGG + chr4_3:55741653-55741672 None:intergenic 45.0%
CAATGTTGTTGCTCATAGCC+TGG + chr4_3:55741675-55741694 None:intergenic 45.0%
TGGATGCTGAGACAGTAGTA+AGG + chr4_3:55741808-55741827 None:intergenic 45.0%
CCCATGGTTTCTGCTACTAA+AGG - chr4_3:55741857-55741876 Msa0649160:three_prime_UTR 45.0%
! GAAACAGGTTGGGGATTGAT+TGG + chr4_3:55741944-55741963 None:intergenic 45.0%
TTCAGAGATCGCACTGAAAG+TGG - chr4_3:55742335-55742354 Msa0649160:CDS 45.0%
TCAGAGATCGCACTGAAAGT+GGG - chr4_3:55742336-55742355 Msa0649160:CDS 45.0%
TTTCGACAGAGAGGTAGAGA+TGG - chr4_3:55742394-55742413 Msa0649160:intron 45.0%
TGAATCACCAGAGGAGAAGA+AGG - chr4_3:55742470-55742489 Msa0649160:intron 45.0%
GAATCACCAGAGGAGAAGAA+GGG - chr4_3:55742471-55742490 Msa0649160:intron 45.0%
AATCACCAGAGGAGAAGAAG+GGG - chr4_3:55742472-55742491 Msa0649160:intron 45.0%
TCAACTACCAAAGACAGTGG+CGG + chr4_3:55742624-55742643 None:intergenic 45.0%
! GCACCGACACTTTAGATTGA+TGG + chr4_3:55742783-55742802 None:intergenic 45.0%
GCGGGGAGATTAATGATGAG+AGG + chr4_3:55740562-55740581 Msa0649150:intron 50.0%
CATCACCACCACTACCACAA+AGG - chr4_3:55740586-55740605 Msa0649160:three_prime_UTR 50.0%
! TGTTGGTGCCTTTGTGGTAG+TGG + chr4_3:55740597-55740616 Msa0649150:intron 50.0%
!! CTACCACAAAGGCACCAACA+CGG - chr4_3:55740597-55740616 Msa0649160:three_prime_UTR 50.0%
! GGAGTCTCTCCAGTCCATTT+TGG + chr4_3:55740707-55740726 Msa0649150:intron 50.0%
CTTGTCTAGCACCAAGCTTG+AGG + chr4_3:55740781-55740800 Msa0649150:intron 50.0%
TGTTCCTCTTTGGTCAGTGG+CGG - chr4_3:55741264-55741283 Msa0649160:three_prime_UTR 50.0%
GGATGGCCGCTATCAATTCT+TGG - chr4_3:55741306-55741325 Msa0649160:three_prime_UTR 50.0%
CAGAAAGAGATAAGCAGGCC+AGG - chr4_3:55741654-55741673 Msa0649160:three_prime_UTR 50.0%
ATTCTACCATCGCAGACCCA+TGG - chr4_3:55741841-55741860 Msa0649160:three_prime_UTR 50.0%
AGTGGGTAACTGAAAGGTCG+TGG - chr4_3:55742353-55742372 Msa0649160:CDS 50.0%
GGGCTTCAATTTCGACAGAG+AGG - chr4_3:55742385-55742404 Msa0649160:intron 50.0%
ACAAACACCGGACACGACAT+TGG - chr4_3:55742673-55742692 Msa0649160:CDS 50.0%
GTGTGGACACTGACACATGT+TGG - chr4_3:55742752-55742771 Msa0649160:exon 50.0%
GCGGGGAGATTAATGATGAG+AGG + chr4_3:55740562-55740581 Msa0649150:intron 50.0%
CATCACCACCACTACCACAA+AGG - chr4_3:55740586-55740605 Msa0649160:three_prime_UTR 50.0%
! TGTTGGTGCCTTTGTGGTAG+TGG + chr4_3:55740597-55740616 Msa0649150:intron 50.0%
!! CTACCACAAAGGCACCAACA+CGG - chr4_3:55740597-55740616 Msa0649160:three_prime_UTR 50.0%
! GGAGTCTCTCCAGTCCATTT+TGG + chr4_3:55740707-55740726 Msa0649150:intron 50.0%
CTTGTCTAGCACCAAGCTTG+AGG + chr4_3:55740781-55740800 Msa0649150:intron 50.0%
TGTTCCTCTTTGGTCAGTGG+CGG - chr4_3:55741264-55741283 Msa0649160:three_prime_UTR 50.0%
GGATGGCCGCTATCAATTCT+TGG - chr4_3:55741306-55741325 Msa0649160:three_prime_UTR 50.0%
CAGAAAGAGATAAGCAGGCC+AGG - chr4_3:55741654-55741673 Msa0649160:three_prime_UTR 50.0%
ATTCTACCATCGCAGACCCA+TGG - chr4_3:55741841-55741860 Msa0649160:three_prime_UTR 50.0%
AGTGGGTAACTGAAAGGTCG+TGG - chr4_3:55742353-55742372 Msa0649160:CDS 50.0%
GGGCTTCAATTTCGACAGAG+AGG - chr4_3:55742385-55742404 Msa0649160:intron 50.0%
ACAAACACCGGACACGACAT+TGG - chr4_3:55742673-55742692 Msa0649160:CDS 50.0%
GTGTGGACACTGACACATGT+TGG - chr4_3:55742752-55742771 Msa0649160:exon 50.0%
! TAGTGGTGGTGATGCCATGC+GGG + chr4_3:55740580-55740599 Msa0649150:intron 55.0%
! GTAGTGGTGGTGATGCCATG+CGG + chr4_3:55740581-55740600 Msa0649150:intron 55.0%
!! TGGTGCCTTTGTGGTAGTGG+TGG + chr4_3:55740594-55740613 Msa0649150:intron 55.0%
AGAGACTCCTCTCTCTCGCA+TGG - chr4_3:55740718-55740737 Msa0649160:three_prime_UTR 55.0%
CAGAAACCATGGGTCTGCGA+TGG + chr4_3:55741850-55741869 None:intergenic 55.0%
GAAAGGTCGTGGCGTGATTG+CGG - chr4_3:55742364-55742383 Msa0649160:CDS 55.0%
AAAGGTCGTGGCGTGATTGC+GGG - chr4_3:55742365-55742384 Msa0649160:CDS 55.0%
GGTAGAGATGGCGACGAACA+CGG - chr4_3:55742406-55742425 Msa0649160:intron 55.0%
GTGTGACTGGGGATAGGTGA+TGG - chr4_3:55742434-55742453 Msa0649160:intron 55.0%
!! GACTGGGGATAGGTGATGGA+TGG - chr4_3:55742438-55742457 Msa0649160:intron 55.0%
!! TGGGGATAGGTGATGGATGG+AGG - chr4_3:55742441-55742460 Msa0649160:intron 55.0%
AGGTCGCACTGAATCACCAG+AGG - chr4_3:55742461-55742480 Msa0649160:intron 55.0%
! TAGTGGTGGTGATGCCATGC+GGG + chr4_3:55740580-55740599 Msa0649150:intron 55.0%
! GTAGTGGTGGTGATGCCATG+CGG + chr4_3:55740581-55740600 Msa0649150:intron 55.0%
!! TGGTGCCTTTGTGGTAGTGG+TGG + chr4_3:55740594-55740613 Msa0649150:intron 55.0%
AGAGACTCCTCTCTCTCGCA+TGG - chr4_3:55740718-55740737 Msa0649160:three_prime_UTR 55.0%
CAGAAACCATGGGTCTGCGA+TGG + chr4_3:55741850-55741869 None:intergenic 55.0%
GAAAGGTCGTGGCGTGATTG+CGG - chr4_3:55742364-55742383 Msa0649160:CDS 55.0%
AAAGGTCGTGGCGTGATTGC+GGG - chr4_3:55742365-55742384 Msa0649160:CDS 55.0%
GGTAGAGATGGCGACGAACA+CGG - chr4_3:55742406-55742425 Msa0649160:intron 55.0%
GTGTGACTGGGGATAGGTGA+TGG - chr4_3:55742434-55742453 Msa0649160:intron 55.0%
!! GACTGGGGATAGGTGATGGA+TGG - chr4_3:55742438-55742457 Msa0649160:intron 55.0%
!! TGGGGATAGGTGATGGATGG+AGG - chr4_3:55742441-55742460 Msa0649160:intron 55.0%
AGGTCGCACTGAATCACCAG+AGG - chr4_3:55742461-55742480 Msa0649160:intron 55.0%
! AGTGGTGGTGATGCCATGCG+GGG + chr4_3:55740579-55740598 Msa0649150:intron 60.0%
! ACGCCGTGTTGGTGCCTTTG+TGG + chr4_3:55740603-55740622 Msa0649150:intron 60.0%
TCACGTGGTGGTTCACGCTG+CGG - chr4_3:55740622-55740641 Msa0649160:three_prime_UTR 60.0%
GCTCGAACCATGCGAGAGAG+AGG + chr4_3:55740728-55740747 Msa0649150:intron 60.0%
AACACGGTCGCGGTGTGACT+GGG - chr4_3:55742422-55742441 Msa0649160:intron 60.0%
CGTGACCCCTTCTTCTCCTC+TGG + chr4_3:55742480-55742499 None:intergenic 60.0%
CCACACGACACCGACACATG+TGG + chr4_3:55742738-55742757 None:intergenic 60.0%
!! CCACATGTGTCGGTGTCGTG+TGG - chr4_3:55742735-55742754 Msa0649160:CDS 60.0%
! AGTGGTGGTGATGCCATGCG+GGG + chr4_3:55740579-55740598 Msa0649150:intron 60.0%
! ACGCCGTGTTGGTGCCTTTG+TGG + chr4_3:55740603-55740622 Msa0649150:intron 60.0%
TCACGTGGTGGTTCACGCTG+CGG - chr4_3:55740622-55740641 Msa0649160:three_prime_UTR 60.0%
GCTCGAACCATGCGAGAGAG+AGG + chr4_3:55740728-55740747 Msa0649150:intron 60.0%
AACACGGTCGCGGTGTGACT+GGG - chr4_3:55742422-55742441 Msa0649160:intron 60.0%
CGTGACCCCTTCTTCTCCTC+TGG + chr4_3:55742480-55742499 None:intergenic 60.0%
CCACACGACACCGACACATG+TGG + chr4_3:55742738-55742757 None:intergenic 60.0%
!! CCACATGTGTCGGTGTCGTG+TGG - chr4_3:55742735-55742754 Msa0649160:CDS 60.0%
ACCAACACGGCGTCACGTGG+TGG - chr4_3:55740610-55740629 Msa0649160:three_prime_UTR 65.0%
ACCACCACGTGACGCCGTGT+TGG + chr4_3:55740614-55740633 Msa0649150:intron 65.0%
GGCTCCGCCACTGACCAAAG+AGG + chr4_3:55741271-55741290 None:intergenic 65.0%
GATGGCGACGAACACGGTCG+CGG - chr4_3:55742412-55742431 Msa0649160:intron 65.0%
GAACACGGTCGCGGTGTGAC+TGG - chr4_3:55742421-55742440 Msa0649160:intron 65.0%
ACACGGTCGCGGTGTGACTG+GGG - chr4_3:55742423-55742442 Msa0649160:intron 65.0%
GTCGCGGTGTGACTGGGGAT+AGG - chr4_3:55742428-55742447 Msa0649160:intron 65.0%
!! GTGTGGACTGGGGTTGGCCA+TGG + chr4_3:55742595-55742614 None:intergenic 65.0%
!! AGCCACGTGTGGACTGGGGT+TGG + chr4_3:55742601-55742620 None:intergenic 65.0%
CGTGGCTCCGCCACTGTCTT+TGG - chr4_3:55742614-55742633 Msa0649160:CDS 65.0%
ACCAACACGGCGTCACGTGG+TGG - chr4_3:55740610-55740629 Msa0649160:three_prime_UTR 65.0%
ACCACCACGTGACGCCGTGT+TGG + chr4_3:55740614-55740633 Msa0649150:intron 65.0%
GGCTCCGCCACTGACCAAAG+AGG + chr4_3:55741271-55741290 None:intergenic 65.0%
GATGGCGACGAACACGGTCG+CGG - chr4_3:55742412-55742431 Msa0649160:intron 65.0%
GAACACGGTCGCGGTGTGAC+TGG - chr4_3:55742421-55742440 Msa0649160:intron 65.0%
ACACGGTCGCGGTGTGACTG+GGG - chr4_3:55742423-55742442 Msa0649160:intron 65.0%
GTCGCGGTGTGACTGGGGAT+AGG - chr4_3:55742428-55742447 Msa0649160:intron 65.0%
!! GTGTGGACTGGGGTTGGCCA+TGG + chr4_3:55742595-55742614 None:intergenic 65.0%
!! AGCCACGTGTGGACTGGGGT+TGG + chr4_3:55742601-55742620 None:intergenic 65.0%
CGTGGCTCCGCCACTGTCTT+TGG - chr4_3:55742614-55742633 Msa0649160:CDS 65.0%
GGCACCAACACGGCGTCACG+TGG - chr4_3:55740607-55740626 Msa0649160:three_prime_UTR 70.0%
GGCCAACCCCAGTCCACACG+TGG - chr4_3:55742596-55742615 Msa0649160:CDS 70.0%
! GCGGAGCCACGTGTGGACTG+GGG + chr4_3:55742605-55742624 None:intergenic 70.0%
GGCGGAGCCACGTGTGGACT+GGG + chr4_3:55742606-55742625 None:intergenic 70.0%
TGGCGGAGCCACGTGTGGAC+TGG + chr4_3:55742607-55742626 None:intergenic 70.0%
! GACAGTGGCGGAGCCACGTG+TGG + chr4_3:55742612-55742631 None:intergenic 70.0%
GGCACCAACACGGCGTCACG+TGG - chr4_3:55740607-55740626 Msa0649160:three_prime_UTR 70.0%
GGCCAACCCCAGTCCACACG+TGG - chr4_3:55742596-55742615 Msa0649160:CDS 70.0%
! GCGGAGCCACGTGTGGACTG+GGG + chr4_3:55742605-55742624 None:intergenic 70.0%
GGCGGAGCCACGTGTGGACT+GGG + chr4_3:55742606-55742625 None:intergenic 70.0%
TGGCGGAGCCACGTGTGGAC+TGG + chr4_3:55742607-55742626 None:intergenic 70.0%
! GACAGTGGCGGAGCCACGTG+TGG + chr4_3:55742612-55742631 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55740471 55742826 55740471 ID=Msa0649160;Name=Msa0649160
chr4_3 mRNA 55740471 55742826 55740471 ID=Msa0649160-mRNA-1;Parent=Msa0649160;Name=Msa0649160-mRNA-1;_AED=0.29;_eAED=0.29;_QI=40|1|1|1|0.66|0.5|4|1643|151
chr4_3 exon 55740471 55742178 55740471 ID=Msa0649160-mRNA-1:exon:14360;Parent=Msa0649160-mRNA-1
chr4_3 exon 55742273 55742385 55742273 ID=Msa0649160-mRNA-1:exon:14359;Parent=Msa0649160-mRNA-1
chr4_3 exon 55742487 55742779 55742487 ID=Msa0649160-mRNA-1:exon:14358;Parent=Msa0649160-mRNA-1
chr4_3 exon 55742802 55742826 55742802 ID=Msa0649160-mRNA-1:exon:14357;Parent=Msa0649160-mRNA-1
chr4_3 five_prime_UTR 55742802 55742826 55742802 ID=Msa0649160-mRNA-1:five_prime_utr;Parent=Msa0649160-mRNA-1
chr4_3 five_prime_UTR 55742765 55742779 55742765 ID=Msa0649160-mRNA-1:five_prime_utr;Parent=Msa0649160-mRNA-1
chr4_3 CDS 55742487 55742764 55742487 ID=Msa0649160-mRNA-1:cds;Parent=Msa0649160-mRNA-1
chr4_3 CDS 55742273 55742385 55742273 ID=Msa0649160-mRNA-1:cds;Parent=Msa0649160-mRNA-1
chr4_3 CDS 55742114 55742178 55742114 ID=Msa0649160-mRNA-1:cds;Parent=Msa0649160-mRNA-1
chr4_3 three_prime_UTR 55740471 55742113 55740471 ID=Msa0649160-mRNA-1:three_prime_utr;Parent=Msa0649160-mRNA-1
Gene Sequence

>Msa0649160

ATGGCTCTGTCTTCACAACTTCAGAACCTCTCATCATTAATCTCCCCGCATGGCATCACCACCACTACCACAAAGGCACCAACACGGCGTCACGTGGTGGTTCACGCTGCGGCTTCCGACACAACAACCTCCCTTCAAGCTAGTAGCTATGAAGAAGGAAAGCTGGTAAGACCAAAATGGACTGGAGAGACTCCTCTCTCTCGCATGGTTCGAGCTCTCATATCTTTCAAGCCTTTATACTCTATCCTCAAGCTTGGTGCTAGACAAGTTCTTATAAGTACAGCTGAGAAAAACAACATACCTTGGAGGGAAATGACAAAAGAGATTTTGGAGTCAGAAGTTTATAAGGAGTTGGATAGCATTCAAAACCAGTCTTTAGTATACCCTGATTATTATTTGAATCCATTTCATGCATATGATGAAGGGAATCTTACATGGCTGGTAATTAAGTGCTAA

Protein sequence

>Msa0649160

MALSSQLQNLSSLISPHGITTTTTKAPTRRHVVVHAAASDTTTSLQASSYEEGKLVRPKWTGETPLSRMVRALISFKPLYSILKLGARQVLISTAEKNNIPWREMTKEILESEVYKELDSIQNQSLVYPDYYLNPFHAYDEGNLTWLVIKC*