AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459270 MtrunA17_Chr5g0412261 90.323 341 25 2 1 333 1 341 0.0 587
Msa1459270 MtrunA17_Chr2g0312621 62.937 143 50 2 192 331 495 637 3.57e-54 191
Msa1459270 MtrunA17_Chr1g0201991 40.310 129 62 2 192 305 235 363 2.43e-23 100
Msa1459270 MtrunA17_Chr1g0202021 40.310 129 62 2 192 305 750 878 6.13e-23 100
Msa1459270 MtrunA17_Chr4g0000221 33.333 114 73 1 192 305 39 149 1.73e-14 73.9
Msa1459270 MtrunA17_Chr3g0130991 32.895 152 79 4 185 313 70 221 5.73e-13 69.7
Msa1459270 MtrunA17_Chr1g0173551 31.081 148 85 4 183 313 70 217 5.40e-12 66.6
Msa1459270 MtrunA17_Chr7g0264901 30.709 127 73 2 192 305 36 160 6.38e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459270 AT4G11160.3 68.148 270 81 4 68 332 90 359 2.28e-126 374
Msa1459270 AT4G11160.2 68.148 270 81 4 68 332 90 359 5.38e-124 373
Msa1459270 AT4G11160.1 68.148 270 81 4 68 332 88 357 5.51e-124 373
Msa1459270 AT1G17220.1 61.538 143 52 1 192 331 500 642 1.91e-48 174
Msa1459270 AT1G76810.1 39.568 139 68 2 182 305 695 832 2.82e-23 101
Msa1459270 AT1G21160.1 39.535 129 63 2 192 305 496 624 4.54e-23 100
Msa1459270 AT1G76720.2 38.235 136 68 3 185 305 654 788 1.89e-21 95.9
Msa1459270 AT1G76720.1 38.235 136 68 3 185 305 621 755 1.97e-21 95.9
Msa1459270 AT2G27700.2 34.109 129 69 2 192 305 35 162 2.12e-17 83.2
Msa1459270 AT2G27700.1 34.109 129 69 2 192 305 35 162 2.22e-17 83.2
Msa1459270 AT5G39900.1 32.877 146 75 2 197 319 70 215 5.36e-15 76.3
Msa1459270 AT5G08650.2 30.061 163 91 2 174 313 62 224 1.15e-13 72.4
Msa1459270 AT5G08650.1 30.061 163 91 2 174 313 62 224 1.31e-13 72.0
Msa1459270 AT5G13650.2 35.556 135 68 4 196 313 86 218 6.89e-13 70.1
Msa1459270 AT5G13650.1 35.556 135 68 4 196 313 85 217 6.95e-13 70.1

Find 216 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCCGACTTAATAAATT+TGG 0.122459 tig0040172:-6000 None:intergenic
CCGTGTGATTTACCACTTAT+TGG 0.197956 tig0040172:+5626 Msa1459270:three_prime_UTR
GGAGATGGGTGGGGATATTC+AGG 0.234519 tig0040172:+3926 Msa1459270:CDS
GGCCTTCTCTATTATCAAAT+TGG 0.244623 tig0040172:-5658 None:intergenic
ACCTGAGTCTCGGGTGTACC+TGG 0.267664 tig0040172:-5681 None:intergenic
ACTGCCATTTCAACCCTCTT+TGG 0.276071 tig0040172:-4411 None:intergenic
GGGACACAGCTTCAAGTGTT+TGG 0.288016 tig0040172:-3791 None:intergenic
TTGGTATACAAACTACTTAA+AGG 0.290668 tig0040172:-6161 None:intergenic
GTTGAACTGGCAAAGCGTTC+TGG 0.303622 tig0040172:+2715 Msa1459270:CDS
TCTGTATTTAACAGTTATTT+TGG 0.304272 tig0040172:-6104 None:intergenic
GGACACAGCTTCAAGTGTTT+GGG 0.304917 tig0040172:-3790 None:intergenic
TCAATCTCCACAGGCATTGC+TGG 0.315953 tig0040172:-4225 None:intergenic
CTCTCCGACTTAATAAATTT+GGG 0.320360 tig0040172:-5999 None:intergenic
GAAATGGCAGTAATTGTAAA+AGG 0.326721 tig0040172:+4423 Msa1459270:three_prime_UTR
CAGCAACCATGAGGCTTCTA+AGG 0.327625 tig0040172:+5814 Msa1459270:three_prime_UTR
TTCAGAGGGCTTGCTGTTAG+AGG 0.337080 tig0040172:+3905 Msa1459270:CDS
GCTGCTTGGGTAAGAGAAAT+AGG 0.339802 tig0040172:-5012 None:intergenic
TCCACGTCGGATTGAGAAAT+AGG 0.351892 tig0040172:-4937 None:intergenic
AATTGTAAAAGGAGATGTTC+AGG 0.356652 tig0040172:+4434 Msa1459270:three_prime_UTR
AGTGAAAGGGAGCAAATCTA+AGG 0.362028 tig0040172:+5737 Msa1459270:three_prime_UTR
AGAGGAAGCTTTACTCCTTC+AGG 0.368367 tig0040172:+3993 Msa1459270:three_prime_UTR
GATCTTAAAGCACGATTTGA+TGG 0.369791 tig0040172:+4027 Msa1459270:three_prime_UTR
ATAGGTGTGGCTGGTTTAGT+AGG 0.373010 tig0040172:+2007 Msa1459270:CDS
TAGGTGTGGCTGGTTTAGTA+GGG 0.376777 tig0040172:+2008 Msa1459270:CDS
TTATTGACTGCAACTACAAC+TGG 0.378111 tig0040172:-3834 None:intergenic
AATTTGAAGAGGACAGGCTT+AGG 0.382248 tig0040172:+4340 Msa1459270:three_prime_UTR
TCAGTATCATCTGAAGTAGT+TGG 0.393486 tig0040172:-4381 None:intergenic
GACCTTGTTCGTCTCTTAAG+AGG 0.400893 tig0040172:+5859 Msa1459270:three_prime_UTR
TATGAACTTTACCAGAGCTT+TGG 0.407075 tig0040172:+1779 Msa1459270:CDS
TTGCCCAGCCACCTGAGTCT+CGG 0.408386 tig0040172:-5691 None:intergenic
TGCCCAGCCACCTGAGTCTC+GGG 0.408821 tig0040172:-5690 None:intergenic
ACTCCTTCAGGCTGATATGA+TGG 0.413624 tig0040172:+4005 Msa1459270:three_prime_UTR
ACCGCAGCTCTAGCAAAGTA+TGG 0.413665 tig0040172:+6241 Msa1459270:three_prime_UTR
AGTAATGCCACCAGCTTCCT+TGG 0.417665 tig0040172:-3610 None:intergenic
TGCTGCACCTCTTGCTCGCA+TGG 0.419039 tig0040172:-3718 None:intergenic
TCAGCATCTAGGTGCCTTTG+TGG 0.425469 tig0040172:+3632 Msa1459270:CDS
GGGCTTGCTGTTAGAGGAGA+TGG 0.426121 tig0040172:+3911 Msa1459270:CDS
CGTAATACTTCTTATTAAGA+AGG 0.430271 tig0040172:-6304 None:intergenic
CAAGATATTCTCACAACTGT+TGG 0.433729 tig0040172:+2757 Msa1459270:CDS
ATTTGAAGAGGACAGGCTTA+GGG 0.435192 tig0040172:+4341 Msa1459270:three_prime_UTR
GCTTGCGGTGCATGCATAGT+TGG 0.436862 tig0040172:+4970 Msa1459270:three_prime_UTR
CCTGAGTCTCGGGTGTACCT+GGG 0.437418 tig0040172:-5680 None:intergenic
CACAGTTTGAGTCTAGGGTT+AGG 0.438899 tig0040172:+1275 Msa1459270:five_prime_UTR
AGGCATGACCCTTGTTGAAC+TGG 0.440050 tig0040172:+2702 Msa1459270:CDS
TTTGTGGTGGGCATGTCATC+AGG 0.441533 tig0040172:+3648 Msa1459270:CDS
TGTGGACAGCATGTGGTTGT+AGG 0.444121 tig0040172:+4138 Msa1459270:three_prime_UTR
GGGACGTGTGGAGCGTCAAC+AGG 0.446013 tig0040172:-2625 None:intergenic
CTGGATCACAGTTTGAGTCT+AGG 0.449053 tig0040172:+1269 Msa1459270:five_prime_UTR
TGCTGTTAGAGGAGATGGGT+GGG 0.449295 tig0040172:+3916 Msa1459270:CDS
ACACCCGAGACTCAGGTGGC+TGG 0.449642 tig0040172:+5687 Msa1459270:three_prime_UTR
AGAGTTTGAGCCTCTCAGTA+TGG 0.451008 tig0040172:+2795 Msa1459270:CDS
AGTGCTTAGAACAAGTAGTT+AGG 0.451043 tig0040172:+5973 Msa1459270:three_prime_UTR
TGACCCATCACTGTTACAAC+TGG 0.451970 tig0040172:-3531 None:intergenic
CACTCATGTATAGGTGTGGC+TGG 0.452414 tig0040172:+1998 Msa1459270:CDS
CTGAATATCTTTGAAGTGAA+AGG 0.453512 tig0040172:+5723 Msa1459270:three_prime_UTR
TTTGCTGAAGCTTGGAAAGA+AGG 0.454649 tig0040172:+1594 Msa1459270:CDS
ACTAGCACGAGTTGCTGCTT+GGG 0.456407 tig0040172:-5025 None:intergenic
CGGGCTAGAATGCTTAGTTC+TGG 0.456720 tig0040172:+4306 Msa1459270:three_prime_UTR
GTGGAGATTGAAGGGCTTCG+AGG 0.458149 tig0040172:+4237 Msa1459270:three_prime_UTR
TACTAGCACGAGTTGCTGCT+TGG 0.463126 tig0040172:-5026 None:intergenic
AAAAGAAATTTGAAGAGGAC+AGG 0.464360 tig0040172:+4334 Msa1459270:three_prime_UTR
TCCATGCTAGCTCACAAGTC+TGG 0.464520 tig0040172:+2524 Msa1459270:CDS
AGGGAGAAGTATGTGAGAAA+AGG 0.466796 tig0040172:+2586 Msa1459270:intron
GTCTCTTAAGAGGGAGAAGC+AGG 0.467286 tig0040172:+5869 Msa1459270:three_prime_UTR
GCTGGTTGCAAAGTTGTTGA+AGG 0.470555 tig0040172:+5777 Msa1459270:three_prime_UTR
TCCAATGTGTTAGTCGGAGC+TGG 0.472988 tig0040172:+1250 Msa1459270:five_prime_UTR
TTCATCAATCACTCATGTAT+AGG 0.475254 tig0040172:+1989 Msa1459270:CDS
GGTTCCAAAGAGGGTTGAAA+TGG 0.481754 tig0040172:+4407 Msa1459270:three_prime_UTR
ACCAGACTTGTGAGCTAGCA+TGG 0.483849 tig0040172:-2525 None:intergenic
TCATTTCTGTTGCAGGAAGT+TGG 0.487950 tig0040172:+3453 Msa1459270:intron
CACCCGAGACTCAGGTGGCT+GGG 0.489836 tig0040172:+5688 Msa1459270:three_prime_UTR
CAGTATCATCTGAAGTAGTT+GGG 0.490528 tig0040172:-4380 None:intergenic
CTTCGAGGGCTGCCAATGGC+CGG 0.490970 tig0040172:+4252 Msa1459270:three_prime_UTR
TGGATCACAGTTTGAGTCTA+GGG 0.491414 tig0040172:+1270 Msa1459270:five_prime_UTR
ATGGCGGCTTTGCTGAAGCT+TGG 0.492064 tig0040172:+1586 Msa1459270:CDS
AAGTTGGCGTCAATGTTAAG+AGG 0.492222 tig0040172:+3469 Msa1459270:CDS
TATTTCTGAGCTTGCTGCAA+TGG 0.496708 tig0040172:+2819 Msa1459270:CDS
TTCAGGTATTAATTCATTGG+AGG 0.500108 tig0040172:+1196 None:intergenic
TTGGTTGCAGTGACTTTACA+AGG 0.501046 tig0040172:-2646 None:intergenic
GCATCTAGGTGCCTTTGTGG+TGG 0.501908 tig0040172:+3635 Msa1459270:CDS
CCCAGGTACACCCGAGACTC+AGG 0.503358 tig0040172:+5680 Msa1459270:three_prime_UTR
AATGTTGTCCATGTTGGCGT+GGG 0.504531 tig0040172:+4913 Msa1459270:three_prime_UTR
ATGCACCGCAAGCCTGTGCT+AGG 0.507826 tig0040172:-4960 None:intergenic
TGTTGTTCATTCTGAGGAGC+GGG 0.508874 tig0040172:+4287 Msa1459270:three_prime_UTR
TGATGTTGCAGCCAAAGCTC+TGG 0.509914 tig0040172:-1790 None:intergenic
TGACAAAGGACGGGGTCCAT+TGG 0.510063 tig0040172:+4083 Msa1459270:three_prime_UTR
ATCACATTTCTCGACACTCC+TGG 0.512405 tig0040172:+3678 Msa1459270:CDS
TGAATATCTTTGAAGTGAAA+GGG 0.513439 tig0040172:+5724 Msa1459270:three_prime_UTR
TAATTATATACCATTTCAAA+AGG 0.513930 tig0040172:+6272 Msa1459270:three_prime_UTR
TCAGTGGCAGCCAAGGAAGC+TGG 0.515550 tig0040172:+3600 Msa1459270:CDS
GACAACTTTGAATAGTCCTC+AGG 0.516512 tig0040172:+4485 Msa1459270:three_prime_UTR
CATCTAGGTGCCTTTGTGGT+GGG 0.518300 tig0040172:+3636 Msa1459270:CDS
TCTGTGAATGTTGTCCATGT+TGG 0.519196 tig0040172:+4907 Msa1459270:three_prime_UTR
GCAATGCCTGTGGAGATTGA+AGG 0.520519 tig0040172:+4228 Msa1459270:three_prime_UTR
TTGCTGTTAGAGGAGATGGG+TGG 0.521268 tig0040172:+3915 Msa1459270:CDS
AGCAACTCGTGCTAGTATCA+AGG 0.524569 tig0040172:+5032 Msa1459270:three_prime_UTR
TGGCTACGTCTTCCAATAAG+TGG 0.526211 tig0040172:-5638 None:intergenic
AAAACGATAGAAATATTTGA+AGG 0.527056 tig0040172:+2682 Msa1459270:CDS
GCACTAAATGCAGCGTGACC+AGG 0.528840 tig0040172:-3696 None:intergenic
AAATAACTGTTAAATACAGA+TGG 0.529347 tig0040172:+6107 Msa1459270:three_prime_UTR
AGGGCTATTAAAGATGCAGC+AGG 0.529509 tig0040172:+4180 Msa1459270:three_prime_UTR
ACAGTTTGAGTCTAGGGTTA+GGG 0.529878 tig0040172:+1276 Msa1459270:five_prime_UTR
CAGAGTTATATGCTTATGAA+TGG 0.531647 tig0040172:+1567 Msa1459270:intron
TGGAGATTGAAGGGCTTCGA+GGG 0.531700 tig0040172:+4238 Msa1459270:three_prime_UTR
CGAAGCCCTTCAATCTCCAC+AGG 0.532610 tig0040172:-4234 None:intergenic
TAAGAGGGAGAAGCAGGATG+TGG 0.534191 tig0040172:+5875 Msa1459270:three_prime_UTR
GCATCAGCAAGATGCATGGC+TGG 0.536350 tig0040172:+1870 Msa1459270:CDS
ATAGAGTGCTGACGAAAAGC+TGG 0.536436 tig0040172:+6035 Msa1459270:three_prime_UTR
GAAGCCCAAATTTATTAAGT+CGG 0.536909 tig0040172:+5995 Msa1459270:three_prime_UTR
TGCGTTTATGAATTACACAT+TGG 0.537927 tig0040172:+6218 Msa1459270:three_prime_UTR
ACCACTCCTTAGAAGCCTCA+TGG 0.539540 tig0040172:-5820 None:intergenic
TCCTCCAGTTGTAACAGTGA+TGG 0.540721 tig0040172:+3527 Msa1459270:CDS
ACATCATGTAGGCATGTGGT+AGG 0.541362 tig0040172:+1807 Msa1459270:CDS
GCTTCTAAGGAGTGGTGAAA+TGG 0.543450 tig0040172:+5827 Msa1459270:three_prime_UTR
AATAACTACCCAGAAACTGC+CGG 0.546163 tig0040172:-6346 None:intergenic
AGCAAGACTTGACAAAGGAC+GGG 0.546869 tig0040172:+4074 Msa1459270:three_prime_UTR
TGCCACTGACGTTTGACGCA+AGG 0.548783 tig0040172:-3586 None:intergenic
AGGGCTTCGAGGGCTGCCAA+TGG 0.550201 tig0040172:+4248 Msa1459270:three_prime_UTR
TTTAGTGCCATGCGAGCAAG+AGG 0.552994 tig0040172:+3711 Msa1459270:CDS
GTGGAGCGTCAACAGGAGGC+TGG 0.557375 tig0040172:-2618 None:intergenic
AAGCAAGACTTGACAAAGGA+CGG 0.557705 tig0040172:+4073 Msa1459270:three_prime_UTR
TCAAACGTCAGTGGCAGCCA+AGG 0.557842 tig0040172:+3593 Msa1459270:CDS
GGACTAAAGAATGTGGAATA+CGG 0.557860 tig0040172:+2031 Msa1459270:CDS
GGTGGCATTACTCAGCATCT+AGG 0.559213 tig0040172:+3621 Msa1459270:CDS
TGTGGTTGTAGGCTCGCAGT+GGG 0.559390 tig0040172:+4149 Msa1459270:three_prime_UTR
AAAACTACAGCTTGCTTCAG+AGG 0.559700 tig0040172:+3890 Msa1459270:CDS
ATGACATCGTCACCGGCCAT+TGG 0.561870 tig0040172:-4264 None:intergenic
GGACCTGATGTGAAAATAGC+TGG 0.562195 tig0040172:+5759 Msa1459270:three_prime_UTR
ACCTTGTTCGTCTCTTAAGA+GGG 0.563673 tig0040172:+5860 Msa1459270:three_prime_UTR
TGTCATTGTTGTTCATTCTG+AGG 0.565978 tig0040172:+4281 Msa1459270:three_prime_UTR
CAATGCCTGTGGAGATTGAA+GGG 0.566706 tig0040172:+4229 Msa1459270:three_prime_UTR
AAGGCAGGAACTCTAGTTTG+TGG 0.566743 tig0040172:+4120 Msa1459270:three_prime_UTR
TCAACCACATATGCTTGAGC+AGG 0.566940 tig0040172:-4051 None:intergenic
ATTGTAAAAGGAGATGTTCA+GGG 0.570554 tig0040172:+4435 Msa1459270:three_prime_UTR
CCTCCAGTTGTAACAGTGAT+GGG 0.572114 tig0040172:+3528 Msa1459270:CDS
ATAACTACCCAGAAACTGCC+GGG 0.574188 tig0040172:-6345 None:intergenic
GATGTGGATTCTGTGAAGAA+AGG 0.574209 tig0040172:+5891 Msa1459270:three_prime_UTR
GCTGTTAGAGGAGATGGGTG+GGG 0.576180 tig0040172:+3917 Msa1459270:CDS
AACAACAATGACATCGTCAC+CGG 0.576261 tig0040172:-4271 None:intergenic
TTGATAATAGAGAAGGCCCC+AGG 0.576931 tig0040172:+5663 Msa1459270:three_prime_UTR
TACTGAGGAGGTTCCAAAGA+GGG 0.576993 tig0040172:+4398 Msa1459270:three_prime_UTR
AAGAGGTTACATTCAACTGA+AGG 0.577737 tig0040172:+3486 Msa1459270:CDS
AGCCAATTTGATAATAGAGA+AGG 0.578957 tig0040172:+5656 Msa1459270:three_prime_UTR
ATCCGACGTGGACCTAGCAC+AGG 0.580355 tig0040172:+4948 Msa1459270:three_prime_UTR
AAACTACAGCTTGCTTCAGA+GGG 0.580982 tig0040172:+3891 Msa1459270:CDS
GAATGTTGTCCATGTTGGCG+TGG 0.582983 tig0040172:+4912 Msa1459270:three_prime_UTR
GCTCCGACTAACACATTGGA+TGG 0.584765 tig0040172:-1247 None:intergenic
GGCTTGCTGTTAGAGGAGAT+GGG 0.584783 tig0040172:+3912 Msa1459270:CDS
TCAAGAAGTGATGCAGCGTA+TGG 0.585039 tig0040172:+2547 Msa1459270:CDS
TCCATACTTTGCTAGAGCTG+CGG 0.585839 tig0040172:-6242 None:intergenic
TGGTCCTGCTCAAGCATATG+TGG 0.587486 tig0040172:+4047 Msa1459270:three_prime_UTR
AGTGGTGAAATGGTGTTTGA+AGG 0.587901 tig0040172:+5837 Msa1459270:three_prime_UTR
AACGCTTTGCCAGTTCAACA+AGG 0.589366 tig0040172:-2711 None:intergenic
CTAGTTGTTGCTGCAGATGA+CGG 0.590753 tig0040172:+3759 Msa1459270:CDS
ATGTGGTTGTAGGCTCGCAG+TGG 0.591331 tig0040172:+4148 Msa1459270:three_prime_UTR
CTGAGTCTCGGGTGTACCTG+GGG 0.593935 tig0040172:-5679 None:intergenic
GTGACTACTATAGTGAAGGC+AGG 0.594123 tig0040172:+4105 Msa1459270:three_prime_UTR
AAATTTATTAAGTCGGAGAG+TGG 0.594592 tig0040172:+6002 Msa1459270:three_prime_UTR
TTGTTGTTCATTCTGAGGAG+CGG 0.596000 tig0040172:+4286 Msa1459270:three_prime_UTR
GAAGGAGTAAAGCTTCCTCT+AGG 0.596889 tig0040172:-3990 None:intergenic
AAATAGGCCCCACGCCAACA+TGG 0.597607 tig0040172:-4921 None:intergenic
TTGACGCAAGGCATCAAGAA+GGG 0.602671 tig0040172:-3574 None:intergenic
AGAGGAAAATAATTTGATCC+CGG 0.602770 tig0040172:+6327 Msa1459270:three_prime_UTR
CTTTGGCTGCAACATCATGT+AGG 0.603843 tig0040172:+1796 Msa1459270:CDS
CCCATCACTGTTACAACTGG+AGG 0.604246 tig0040172:-3528 None:intergenic
TAGCCATCCAATGTGTTAGT+CGG 0.608301 tig0040172:+1244 Msa1459270:five_prime_UTR
GATCCATCATATCAGCCTGA+AGG 0.609133 tig0040172:-4008 None:intergenic
TCCAGCTCCGACTAACACAT+TGG 0.610258 tig0040172:-1251 None:intergenic
AGGTGTGGCTGGTTTAGTAG+GGG 0.610867 tig0040172:+2009 Msa1459270:CDS
CCAATAAGTGGTAAATCACA+CGG 0.614579 tig0040172:-5626 None:intergenic
GTCAATAAATGTGATAAACC+AGG 0.615284 tig0040172:+3849 Msa1459270:CDS
TTTGAAGAGGACAGGCTTAG+GGG 0.616568 tig0040172:+4342 Msa1459270:three_prime_UTR
TTCACTATAGTAGTCACCAA+TGG 0.618438 tig0040172:-4099 None:intergenic
TTTGACGCAAGGCATCAAGA+AGG 0.619099 tig0040172:-3575 None:intergenic
ACTGTTACAACTGGAGGACG+TGG 0.619466 tig0040172:-3522 None:intergenic
TTAATAAGAAGTATTACGAG+AGG 0.620547 tig0040172:+6309 Msa1459270:three_prime_UTR
CTAGAATGCTTAGTTCTGGT+AGG 0.622551 tig0040172:+4310 Msa1459270:three_prime_UTR
CAATCACTCATGTATAGGTG+TGG 0.626934 tig0040172:+1994 Msa1459270:CDS
ATTGGTGACTACTATAGTGA+AGG 0.629654 tig0040172:+4101 Msa1459270:three_prime_UTR
GTGATGGGTCATGTTGATCA+CGG 0.630061 tig0040172:+3543 Msa1459270:CDS
GTGAAAGGGAGCAAATCTAA+GGG 0.630238 tig0040172:+5738 Msa1459270:three_prime_UTR
ACCATGAGGCTTCTAAGGAG+TGG 0.630459 tig0040172:+5819 Msa1459270:three_prime_UTR
GGTGTGGCTGGTTTAGTAGG+GGG 0.633750 tig0040172:+2010 Msa1459270:CDS
GACACAGCTTCAAGTGTTTG+GGG 0.635718 tig0040172:-3789 None:intergenic
CATCATGTAGGCATGTGGTA+GGG 0.636284 tig0040172:+1808 Msa1459270:CDS
GTGGCAGCCAAGGAAGCTGG+TGG 0.636567 tig0040172:+3603 Msa1459270:CDS
AGCAACTCCAGCAATGCCTG+TGG 0.638181 tig0040172:+4218 Msa1459270:three_prime_UTR
TGCCTTGCGTCAAACGTCAG+TGG 0.640297 tig0040172:+3584 Msa1459270:CDS
TCTAGTTTGTGGACAGCATG+TGG 0.640880 tig0040172:+4131 Msa1459270:three_prime_UTR
AGTTATATGCTTATGAATGG+CGG 0.643946 tig0040172:+1570 Msa1459270:exon
GCCTATTTCTCAATCCGACG+TGG 0.644268 tig0040172:+4936 Msa1459270:three_prime_UTR
ACGTGTGGAGCGTCAACAGG+AGG 0.644835 tig0040172:-2622 None:intergenic
GTGAAGAAAGGAAATGAGTG+TGG 0.647644 tig0040172:+5903 Msa1459270:three_prime_UTR
ACGCTTTGCCAGTTCAACAA+GGG 0.649253 tig0040172:-2710 None:intergenic
TACTTCAGATGATACTGAGG+AGG 0.649683 tig0040172:+4386 Msa1459270:three_prime_UTR
GTGACTTTACAAGGGACGTG+TGG 0.659103 tig0040172:-2637 None:intergenic
AACTACTTCAGATGATACTG+AGG 0.662017 tig0040172:+4383 Msa1459270:three_prime_UTR
TGATGACATGCCCACCACAA+AGG 0.668029 tig0040172:-3646 None:intergenic
GCAAGACTTGACAAAGGACG+GGG 0.668444 tig0040172:+4075 Msa1459270:three_prime_UTR
TGAACAGGTCAGCAACCATG+AGG 0.674149 tig0040172:+5805 Msa1459270:three_prime_UTR
TCCCTCTTAAGAGACGAACA+AGG 0.676356 tig0040172:-5861 None:intergenic
AGGTACACCCGAGACTCAGG+TGG 0.677615 tig0040172:+5683 Msa1459270:three_prime_UTR
GTGGACCTAGCACAGGCTTG+CGG 0.681130 tig0040172:+4955 Msa1459270:three_prime_UTR
GACTGGACTGGATAACCTAG+AGG 0.686970 tig0040172:+3975 Msa1459270:three_prime_UTR
TGGTTGCAGTGACTTTACAA+GGG 0.689581 tig0040172:-2645 None:intergenic
TTATGCATCAGCAAGATGCA+TGG 0.690151 tig0040172:+1866 Msa1459270:CDS
GCTTGGGTAAGAGAAATAGG+TGG 0.690336 tig0040172:-5009 None:intergenic
AGCCTGTGCTAGGTCCACGT+CGG 0.697377 tig0040172:-4950 None:intergenic
ATGTTGTCCATGTTGGCGTG+GGG 0.699834 tig0040172:+4914 Msa1459270:three_prime_UTR
GGGCTATTAAAGATGCAGCA+GGG 0.703729 tig0040172:+4181 Msa1459270:three_prime_UTR
TCAGAAATATCCATACTGAG+AGG 0.707747 tig0040172:-2805 None:intergenic
TGCAACATCATGTAGGCATG+TGG 0.713220 tig0040172:+1803 Msa1459270:CDS
GTTGAAGCAAGACTTGACAA+AGG 0.724961 tig0040172:+4069 Msa1459270:three_prime_UTR
ATACTGAGGAGGTTCCAAAG+AGG 0.728916 tig0040172:+4397 Msa1459270:three_prime_UTR
CTATTAAAGATGCAGCAGGG+AGG 0.743526 tig0040172:+4184 Msa1459270:three_prime_UTR
GTGGTTGTAGGCTCGCAGTG+GGG 0.772193 tig0040172:+4150 Msa1459270:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTATTAAGTTTCAT+TGG + tig0040172:1341-1360 Msa1459270:intron 10.0%
!!! TTCTTTTATGAATATCTTAA+AGG - tig0040172:1425-1444 None:intergenic 15.0%
!!! TTTTGTAAATAATTTGCATT+TGG + tig0040172:1534-1553 Msa1459270:intron 15.0%
!!! TTTACACAATTTAAAATGAA+AGG - tig0040172:1649-1668 None:intergenic 15.0%
!! TGGTTATTATAACTATAATA+TGG + tig0040172:4515-4534 Msa1459270:intron 15.0%
!! TTTATTTATATCTCAACATT+TGG - tig0040172:4796-4815 None:intergenic 15.0%
!! TAAAGTAGAATATATTGAAT+TGG + tig0040172:5328-5347 Msa1459270:intron 15.0%
!! GTATTAATTAGAGTTATAAT+TGG + tig0040172:5364-5383 Msa1459270:intron 15.0%
!!! ATTTAGTCTTTAAAATTGTA+AGG - tig0040172:5512-5531 None:intergenic 15.0%
!!! TACAATTTTAAAGACTAAAT+TGG + tig0040172:5512-5531 Msa1459270:intron 15.0%
!! TAATTATATACCATTTCAAA+AGG + tig0040172:6272-6291 Msa1459270:three_prime_UTR 15.0%
!! ATTTACAAAAAAGATAGAGA+CGG - tig0040172:1524-1543 None:intergenic 20.0%
!! AGCTATATACACTTTATTAT+AGG - tig0040172:1709-1728 None:intergenic 20.0%
!! GCTAATAATACTGTAATAAA+TGG + tig0040172:2319-2338 Msa1459270:intron 20.0%
!!! TAATTAGTTTTGTTTTACGT+TGG + tig0040172:2493-2512 Msa1459270:intron 20.0%
!!! AATATTTCTATCGTTTTATC+AGG - tig0040172:2679-2698 None:intergenic 20.0%
!! AAAACGATAGAAATATTTGA+AGG + tig0040172:2682-2701 Msa1459270:CDS 20.0%
!! ATTGTAGCATTATTATACTT+GGG + tig0040172:3274-3293 Msa1459270:intron 20.0%
!! ACAAGTAAATATAAAACAGT+AGG + tig0040172:4646-4665 Msa1459270:intron 20.0%
!! TGATTACTCTTAGTTAAATA+CGG - tig0040172:5074-5093 None:intergenic 20.0%
!!! GACTGAAAATTTTCAAATTT+AGG - tig0040172:5164-5183 None:intergenic 20.0%
!!! GGACAATATTTTTTTACTAA+TGG + tig0040172:5435-5454 Msa1459270:intron 20.0%
!!! TCTGTATTTAACAGTTATTT+TGG - tig0040172:6107-6126 None:intergenic 20.0%
!! AAATAACTGTTAAATACAGA+TGG + tig0040172:6107-6126 Msa1459270:three_prime_UTR 20.0%
! TTATTAAGTTTCATTGGAAG+TGG + tig0040172:1347-1366 Msa1459270:intron 25.0%
! CTGCATTCAGATAATAAAAA+GGG - tig0040172:1751-1770 None:intergenic 25.0%
! TCTGCATTCAGATAATAAAA+AGG - tig0040172:1752-1771 None:intergenic 25.0%
! AATTGTTAGCATTACAGTTT+AGG + tig0040172:2090-2109 Msa1459270:intron 25.0%
! AGATATGCATAAAATTACAG+AGG + tig0040172:2185-2204 Msa1459270:intron 25.0%
! GATATGCATAAAATTACAGA+GGG + tig0040172:2186-2205 Msa1459270:intron 25.0%
! ACAAAGCAGTACATAAATTA+CGG - tig0040172:2232-2251 None:intergenic 25.0%
!!! AATCACACAAATTTTAGCAT+TGG - tig0040172:2386-2405 None:intergenic 25.0%
! AGTGACATTAGTTGAAAATT+TGG + tig0040172:2422-2441 Msa1459270:intron 25.0%
! GATGTTAAATCAGTGAATAT+AGG + tig0040172:2864-2883 Msa1459270:intron 25.0%
!!! TTTTTAGTTGCTTGAGATAA+AGG + tig0040172:3045-3064 Msa1459270:intron 25.0%
!!! AATGTTTTGATGGAAATCAA+TGG + tig0040172:3076-3095 Msa1459270:intron 25.0%
!!! CTTTTCCTTAAATTGATAGT+TGG + tig0040172:3112-3131 Msa1459270:intron 25.0%
! AATATGCATAGGAAAGTAAA+AGG + tig0040172:3177-3196 Msa1459270:intron 25.0%
! ATATGCATAGGAAAGTAAAA+GGG + tig0040172:3178-3197 Msa1459270:intron 25.0%
! AATAAGTAATCGATAGTACT+AGG + tig0040172:3202-3221 Msa1459270:intron 25.0%
! GTATAATAATGCTACAATGA+TGG - tig0040172:3272-3291 None:intergenic 25.0%
! CATTGTAGCATTATTATACT+TGG + tig0040172:3273-3292 Msa1459270:intron 25.0%
! CAGAAATAAGGCAAAAAAAA+AGG - tig0040172:3310-3329 None:intergenic 25.0%
!!! CTTTTTTTTTGCCTTATTTC+TGG + tig0040172:3308-3327 Msa1459270:intron 25.0%
! TAGTTCAAAACAAAAAAGGA+GGG - tig0040172:3376-3395 None:intergenic 25.0%
! CATGTAGTTCAAAACAAAAA+AGG - tig0040172:3380-3399 None:intergenic 25.0%
!!! GAACTACATGATGATTTTTT+AGG + tig0040172:3390-3409 Msa1459270:intron 25.0%
! TAGGAAAAAGAAATTTGAAG+AGG + tig0040172:4329-4348 Msa1459270:three_prime_UTR 25.0%
! ACAACAGATAGTGTATTAAT+CGG + tig0040172:4606-4625 Msa1459270:intron 25.0%
! CTAACAATGAAATTACAGAA+TGG - tig0040172:4884-4903 None:intergenic 25.0%
! CATTCTGTAATTTCATTGTT+AGG + tig0040172:4882-4901 Msa1459270:intron 25.0%
! GATTACTCTTAGTTAAATAC+GGG - tig0040172:5073-5092 None:intergenic 25.0%
! TAGTAAAAAAATATTGTCCC+AGG - tig0040172:5434-5453 None:intergenic 25.0%
! ATTTCTATTTGATATCCGTT+TGG + tig0040172:5574-5593 Msa1459270:intron 25.0%
!!! TGAATATCTTTGAAGTGAAA+GGG + tig0040172:5724-5743 Msa1459270:three_prime_UTR 25.0%
! TTGGTATACAAACTACTTAA+AGG - tig0040172:6164-6183 None:intergenic 25.0%
! AATGCACATATCAAAAAACT+TGG - tig0040172:6183-6202 None:intergenic 25.0%
! CGTAATACTTCTTATTAAGA+AGG - tig0040172:6307-6326 None:intergenic 25.0%
!!! TTAATAAGAAGTATTACGAG+AGG + tig0040172:6309-6328 Msa1459270:three_prime_UTR 25.0%
CAGAGTTATATGCTTATGAA+TGG + tig0040172:1567-1586 Msa1459270:intron 30.0%
AGTTATATGCTTATGAATGG+CGG + tig0040172:1570-1589 Msa1459270:exon 30.0%
! CAATTTAAAATGAAAGGAGC+TGG - tig0040172:1643-1662 None:intergenic 30.0%
AGTATACAATAAACAAGTGC+TGG - tig0040172:1931-1950 None:intergenic 30.0%
TTCATCAATCACTCATGTAT+AGG + tig0040172:1989-2008 Msa1459270:CDS 30.0%
ATTACAGTTTAGGTGGTTTA+AGG + tig0040172:2100-2119 Msa1459270:intron 30.0%
!! AGTTGATAGGTATACTACAT+CGG + tig0040172:2253-2272 Msa1459270:intron 30.0%
!!! TGAATTTTTCAAGCATCTCT+CGG + tig0040172:2345-2364 Msa1459270:intron 30.0%
AAAATTTGTGTGATTGCACA+TGG + tig0040172:2391-2410 Msa1459270:intron 30.0%
GGTACTTATAAGTAAAAAGC+TGG + tig0040172:2443-2462 Msa1459270:intron 30.0%
! CGTTTTATCAGGATTAGATT+TGG - tig0040172:2668-2687 None:intergenic 30.0%
AACATCATCTATGACTAAGA+AGG - tig0040172:2850-2869 None:intergenic 30.0%
AAAGGCTAACAAACAAGTAT+TGG - tig0040172:2912-2931 None:intergenic 30.0%
! TGTCATTTACAAATGGGAAA+AGG - tig0040172:2930-2949 None:intergenic 30.0%
! ACAAGCTGTCATTTACAAAT+GGG - tig0040172:2936-2955 None:intergenic 30.0%
! AACAAGCTGTCATTTACAAA+TGG - tig0040172:2937-2956 None:intergenic 30.0%
! TTTGTAAATGACAGCTTGTT+AGG + tig0040172:2937-2956 Msa1459270:intron 30.0%
!! TTGTAAATGACAGCTTGTTA+GGG + tig0040172:2938-2957 Msa1459270:intron 30.0%
CAATGCCAACTATCAATTTA+AGG - tig0040172:3120-3139 None:intergenic 30.0%
! CTTAAATTGATAGTTGGCAT+TGG + tig0040172:3118-3137 Msa1459270:intron 30.0%
AGTTCAAAACAAAAAAGGAG+GGG - tig0040172:3375-3394 None:intergenic 30.0%
GTAGTTCAAAACAAAAAAGG+AGG - tig0040172:3377-3396 None:intergenic 30.0%
!!! ATTTTTTAGGTTCCTGTTTG+TGG + tig0040172:3403-3422 Msa1459270:intron 30.0%
GAAAACAAATATCCACAAAC+AGG - tig0040172:3418-3437 None:intergenic 30.0%
! AATTTGTTCATTTCTGTTGC+AGG + tig0040172:3446-3465 Msa1459270:intron 30.0%
!! TACATTAGCTGATTTTGCAT+GGG - tig0040172:3814-3833 None:intergenic 30.0%
GTCAATAAATGTGATAAACC+AGG + tig0040172:3849-3868 Msa1459270:CDS 30.0%
!!! AGCTGTAGTTTTACTTTTTC+AGG - tig0040172:3882-3901 None:intergenic 30.0%
AAAAGAAATTTGAAGAGGAC+AGG + tig0040172:4334-4353 Msa1459270:three_prime_UTR 30.0%
GAAATGGCAGTAATTGTAAA+AGG + tig0040172:4423-4442 Msa1459270:three_prime_UTR 30.0%
AATTGTAAAAGGAGATGTTC+AGG + tig0040172:4434-4453 Msa1459270:three_prime_UTR 30.0%
ATTGTAAAAGGAGATGTTCA+GGG + tig0040172:4435-4454 Msa1459270:three_prime_UTR 30.0%
AATACACTATCTGTTGTTGA+CGG - tig0040172:4603-4622 None:intergenic 30.0%
TAAGATCACATTAATCAGCA+TGG + tig0040172:4699-4718 Msa1459270:intron 30.0%
CATGCTTCAACAGAAAAAAA+GGG - tig0040172:4746-4765 None:intergenic 30.0%
ACATGCTTCAACAGAAAAAA+AGG - tig0040172:4747-4766 None:intergenic 30.0%
ATATCTCAACATTTGGACAA+AGG - tig0040172:4789-4808 None:intergenic 30.0%
TCTTAGTTAAATACGGGAAA+AGG - tig0040172:5067-5086 None:intergenic 30.0%
GTTGACGTCTTATAATCTTA+GGG - tig0040172:5107-5126 None:intergenic 30.0%
AGTTGACGTCTTATAATCTT+AGG - tig0040172:5108-5127 None:intergenic 30.0%
! CTTTTCTAATCTGTGTGAAA+TGG - tig0040172:5234-5253 None:intergenic 30.0%
TACTAATGGCTCAGTTATTA+AGG + tig0040172:5449-5468 Msa1459270:intron 30.0%
ACTAATGGCTCAGTTATTAA+GGG + tig0040172:5450-5469 Msa1459270:intron 30.0%
TATTTGATATCCGTTTGGTT+TGG + tig0040172:5579-5598 Msa1459270:intron 30.0%
! AGCCAATTTGATAATAGAGA+AGG + tig0040172:5656-5675 Msa1459270:three_prime_UTR 30.0%
!! CTGAATATCTTTGAAGTGAA+AGG + tig0040172:5723-5742 Msa1459270:three_prime_UTR 30.0%
! AACTGTTGTGATTTTCAGAT+TGG + tig0040172:5939-5958 Msa1459270:three_prime_UTR 30.0%
GAAGCCCAAATTTATTAAGT+CGG + tig0040172:5995-6014 Msa1459270:three_prime_UTR 30.0%
CTCTCCGACTTAATAAATTT+GGG - tig0040172:6002-6021 None:intergenic 30.0%
ACTCTCCGACTTAATAAATT+TGG - tig0040172:6003-6022 None:intergenic 30.0%
AAATTTATTAAGTCGGAGAG+TGG + tig0040172:6002-6021 Msa1459270:three_prime_UTR 30.0%
TGCGTTTATGAATTACACAT+TGG + tig0040172:6218-6237 Msa1459270:three_prime_UTR 30.0%
AGAGGAAAATAATTTGATCC+CGG + tig0040172:6327-6346 Msa1459270:three_prime_UTR 30.0%
ATTGTACCCTTCACTTTCAA+CGG + tig0040172:1306-1325 Msa1459270:intron 35.0%
ACAAAACCGTTGAAAGTGAA+GGG - tig0040172:1315-1334 None:intergenic 35.0%
TACAAAACCGTTGAAAGTGA+AGG - tig0040172:1316-1335 None:intergenic 35.0%
TAAGTTTCATTGGAAGTGGA+AGG + tig0040172:1351-1370 Msa1459270:intron 35.0%
GCATATAACTCTGCAGATAT+AGG - tig0040172:1560-1579 None:intergenic 35.0%
TATGAACTTTACCAGAGCTT+TGG + tig0040172:1779-1798 Msa1459270:CDS 35.0%
TGATTGATGAAATCTGCATC+AGG - tig0040172:1980-1999 None:intergenic 35.0%
GGACTAAAGAATGTGGAATA+CGG + tig0040172:2031-2050 Msa1459270:CDS 35.0%
TGTTAGCATTACAGTTTAGG+TGG + tig0040172:2093-2112 Msa1459270:intron 35.0%
TTAAGGATGACAGCATCATT+TGG + tig0040172:2117-2136 Msa1459270:intron 35.0%
TGCATAAAATTACAGAGGGA+TGG + tig0040172:2190-2209 Msa1459270:intron 35.0%
GCATAAAATTACAGAGGGAT+GGG + tig0040172:2191-2210 Msa1459270:intron 35.0%
CATAAAATTACAGAGGGATG+GGG + tig0040172:2192-2211 Msa1459270:intron 35.0%
ATAAAATTACAGAGGGATGG+GGG + tig0040172:2193-2212 Msa1459270:intron 35.0%
AATACTCCTGATTGGTAGAT+TGG + tig0040172:2280-2299 Msa1459270:intron 35.0%
ATACTCCTGATTGGTAGATT+GGG + tig0040172:2281-2300 Msa1459270:intron 35.0%
GAGAGATGCTTGAAAAATTC+AGG - tig0040172:2346-2365 None:intergenic 35.0%
!!! TAGTTTTGTTTTACGTTGGC+AGG + tig0040172:2497-2516 Msa1459270:intron 35.0%
CAAGATATTCTCACAACTGT+TGG + tig0040172:2757-2776 Msa1459270:CDS 35.0%
TCAGAAATATCCATACTGAG+AGG - tig0040172:2808-2827 None:intergenic 35.0%
TTGGAATCAAAAGACGATAC+TGG - tig0040172:2893-2912 None:intergenic 35.0%
TATTGTGCCTTACGACAAAT+GGG - tig0040172:3161-3180 None:intergenic 35.0%
ATATTGTGCCTTACGACAAA+TGG - tig0040172:3162-3181 None:intergenic 35.0%
GAGTCAATGATCCAGAAATA+AGG - tig0040172:3322-3341 None:intergenic 35.0%
TTCAAAACAAAAAAGGAGGG+GGG - tig0040172:3373-3392 None:intergenic 35.0%
GTTCAAAACAAAAAAGGAGG+GGG - tig0040172:3374-3393 None:intergenic 35.0%
AAGAGGTTACATTCAACTGA+AGG + tig0040172:3486-3505 Msa1459270:CDS 35.0%
!! GTACATTAGCTGATTTTGCA+TGG - tig0040172:3815-3834 None:intergenic 35.0%
! TTATTGACTGCAACTACAAC+TGG - tig0040172:3837-3856 None:intergenic 35.0%
GATCTTAAAGCACGATTTGA+TGG + tig0040172:4027-4046 Msa1459270:three_prime_UTR 35.0%
TTCACTATAGTAGTCACCAA+TGG - tig0040172:4102-4121 None:intergenic 35.0%
! ATTGGTGACTACTATAGTGA+AGG + tig0040172:4101-4120 Msa1459270:three_prime_UTR 35.0%
! TGTCATTGTTGTTCATTCTG+AGG + tig0040172:4281-4300 Msa1459270:three_prime_UTR 35.0%
! CAGTATCATCTGAAGTAGTT+GGG - tig0040172:4383-4402 None:intergenic 35.0%
! TCAGTATCATCTGAAGTAGT+TGG - tig0040172:4384-4403 None:intergenic 35.0%
AACTACTTCAGATGATACTG+AGG + tig0040172:4383-4402 Msa1459270:three_prime_UTR 35.0%
TAATAACCATCACATACCTG+AGG - tig0040172:4504-4523 None:intergenic 35.0%
AATGTGTATGAAAAGCGAAG+TGG + tig0040172:5399-5418 Msa1459270:intron 35.0%
ATGTGTATGAAAAGCGAAGT+GGG + tig0040172:5400-5419 Msa1459270:intron 35.0%
CCAATAAGTGGTAAATCACA+CGG - tig0040172:5629-5648 None:intergenic 35.0%
GGCCTTCTCTATTATCAAAT+TGG - tig0040172:5661-5680 None:intergenic 35.0%
!! TTGTTGAAGGTTTTGTGAAC+AGG + tig0040172:5790-5809 Msa1459270:three_prime_UTR 35.0%
AGTGCTTAGAACAAGTAGTT+AGG + tig0040172:5973-5992 Msa1459270:three_prime_UTR 35.0%
! TCTTTCAGCACACATTTTTG+TGG + tig0040172:6062-6081 Msa1459270:three_prime_UTR 35.0%
!! GTAGTAGCTTCCTTTTGAAA+TGG - tig0040172:6285-6304 None:intergenic 35.0%
TAGCCATCCAATGTGTTAGT+CGG + tig0040172:1244-1263 Msa1459270:five_prime_UTR 40.0%
TGGATCACAGTTTGAGTCTA+GGG + tig0040172:1270-1289 Msa1459270:five_prime_UTR 40.0%
! ACAGTTTGAGTCTAGGGTTA+GGG + tig0040172:1276-1295 Msa1459270:five_prime_UTR 40.0%
TTTGCTGAAGCTTGGAAAGA+AGG + tig0040172:1594-1613 Msa1459270:CDS 40.0%
TACCACAATTATCCATGTGC+AGG + tig0040172:1670-1689 Msa1459270:intron 40.0%
ACCACAATTATCCATGTGCA+GGG + tig0040172:1671-1690 Msa1459270:intron 40.0%
AAAATAAAACCCCCTGCACA+TGG - tig0040172:1685-1704 None:intergenic 40.0%
TTATGCATCAGCAAGATGCA+TGG + tig0040172:1866-1885 Msa1459270:CDS 40.0%
CAATCACTCATGTATAGGTG+TGG + tig0040172:1994-2013 Msa1459270:CDS 40.0%
!! GTACTGCTTTGTGAGTTGAT+AGG + tig0040172:2240-2259 Msa1459270:intron 40.0%
TCGGTGATAATACTCCTGAT+TGG + tig0040172:2272-2291 Msa1459270:intron 40.0%
TCACATACTTCTCCCTCTTT+GGG - tig0040172:2582-2601 None:intergenic 40.0%
! AGGGAGAAGTATGTGAGAAA+AGG + tig0040172:2586-2605 Msa1459270:intron 40.0%
TGGTTGCAGTGACTTTACAA+GGG - tig0040172:2648-2667 None:intergenic 40.0%
TTGGTTGCAGTGACTTTACA+AGG - tig0040172:2649-2668 None:intergenic 40.0%
!! TATTTCTGAGCTTGCTGCAA+TGG + tig0040172:2819-2838 Msa1459270:CDS 40.0%
TTGTCTCATTCTGCTTCACT+TGG + tig0040172:2990-3009 Msa1459270:intron 40.0%
ATTGTGCCTTACGACAAATG+GGG - tig0040172:3160-3179 None:intergenic 40.0%
TCGTAAGGCACAATATGCAT+AGG + tig0040172:3166-3185 Msa1459270:intron 40.0%
TCAAAACAAAAAAGGAGGGG+GGG - tig0040172:3372-3391 None:intergenic 40.0%
TCATTTCTGTTGCAGGAAGT+TGG + tig0040172:3453-3472 Msa1459270:intron 40.0%
AAGTTGGCGTCAATGTTAAG+AGG + tig0040172:3469-3488 Msa1459270:CDS 40.0%
!!! ACTTTTTCAGGATTTGCACC+TGG - tig0040172:3870-3889 None:intergenic 40.0%
! AAAACTACAGCTTGCTTCAG+AGG + tig0040172:3890-3909 Msa1459270:CDS 40.0%
! AAACTACAGCTTGCTTCAGA+GGG + tig0040172:3891-3910 Msa1459270:CDS 40.0%
GTTGAAGCAAGACTTGACAA+AGG + tig0040172:4069-4088 Msa1459270:three_prime_UTR 40.0%
AAGCAAGACTTGACAAAGGA+CGG + tig0040172:4073-4092 Msa1459270:three_prime_UTR 40.0%
AACAACAATGACATCGTCAC+CGG - tig0040172:4274-4293 None:intergenic 40.0%
! TTGTTGTTCATTCTGAGGAG+CGG + tig0040172:4286-4305 Msa1459270:three_prime_UTR 40.0%
!! CTAGAATGCTTAGTTCTGGT+AGG + tig0040172:4310-4329 Msa1459270:three_prime_UTR 40.0%
AATTTGAAGAGGACAGGCTT+AGG + tig0040172:4340-4359 Msa1459270:three_prime_UTR 40.0%
ATTTGAAGAGGACAGGCTTA+GGG + tig0040172:4341-4360 Msa1459270:three_prime_UTR 40.0%
TACTTCAGATGATACTGAGG+AGG + tig0040172:4386-4405 Msa1459270:three_prime_UTR 40.0%
GACAACTTTGAATAGTCCTC+AGG + tig0040172:4485-4504 Msa1459270:three_prime_UTR 40.0%
AATAGTCCTCAGGTATGTGA+TGG + tig0040172:4495-4514 Msa1459270:intron 40.0%
TCTGTGAATGTTGTCCATGT+TGG + tig0040172:4907-4926 Msa1459270:three_prime_UTR 40.0%
ATCTGTGTGAAATGGTCTAC+TGG - tig0040172:5226-5245 None:intergenic 40.0%
AATGGCTCAGTTATTAAGGG+CGG + tig0040172:5453-5472 Msa1459270:intron 40.0%
CGGAGGGAGTAATAAAATTC+AGG + tig0040172:5473-5492 Msa1459270:intron 40.0%
!! GATATCCGTTTGGTTTGGTT+TGG + tig0040172:5584-5603 Msa1459270:intron 40.0%
CCAAACCAAACCAAACCAAA+CGG - tig0040172:5592-5611 None:intergenic 40.0%
!! TTGGTTTGGTTTGGTTTGGT+AGG + tig0040172:5593-5612 Msa1459270:intron 40.0%
CCGTGTGATTTACCACTTAT+TGG + tig0040172:5626-5645 Msa1459270:three_prime_UTR 40.0%
AGTGAAAGGGAGCAAATCTA+AGG + tig0040172:5737-5756 Msa1459270:three_prime_UTR 40.0%
GTGAAAGGGAGCAAATCTAA+GGG + tig0040172:5738-5757 Msa1459270:three_prime_UTR 40.0%
!! CAACCAGCTATTTTCACATC+AGG - tig0040172:5765-5784 None:intergenic 40.0%
AGTGGTGAAATGGTGTTTGA+AGG + tig0040172:5837-5856 Msa1459270:three_prime_UTR 40.0%
ACCTTGTTCGTCTCTTAAGA+GGG + tig0040172:5860-5879 Msa1459270:three_prime_UTR 40.0%
GATGTGGATTCTGTGAAGAA+AGG + tig0040172:5891-5910 Msa1459270:three_prime_UTR 40.0%
GTGAAGAAAGGAAATGAGTG+TGG + tig0040172:5903-5922 Msa1459270:three_prime_UTR 40.0%
!!! AACAGTTATTTTGGCAGCTC+AGG - tig0040172:6098-6117 None:intergenic 40.0%
CTGGATCACAGTTTGAGTCT+AGG + tig0040172:1269-1288 Msa1459270:five_prime_UTR 45.0%
! CACAGTTTGAGTCTAGGGTT+AGG + tig0040172:1275-1294 Msa1459270:five_prime_UTR 45.0%
CCACAATTATCCATGTGCAG+GGG + tig0040172:1672-1691 Msa1459270:intron 45.0%
CACAATTATCCATGTGCAGG+GGG + tig0040172:1673-1692 Msa1459270:intron 45.0%
CTTTGGCTGCAACATCATGT+AGG + tig0040172:1796-1815 Msa1459270:CDS 45.0%
TGCAACATCATGTAGGCATG+TGG + tig0040172:1803-1822 Msa1459270:CDS 45.0%
ACATCATGTAGGCATGTGGT+AGG + tig0040172:1807-1826 Msa1459270:CDS 45.0%
CATCATGTAGGCATGTGGTA+GGG + tig0040172:1808-1827 Msa1459270:CDS 45.0%
!! ATAGGTGTGGCTGGTTTAGT+AGG + tig0040172:2007-2026 Msa1459270:CDS 45.0%
!! TAGGTGTGGCTGGTTTAGTA+GGG + tig0040172:2008-2027 Msa1459270:CDS 45.0%
AGTAGGGGGACTAAAGAATG+TGG + tig0040172:2024-2043 Msa1459270:CDS 45.0%
AGCATCATTTGGCCTATGCA+TGG + tig0040172:2128-2147 Msa1459270:intron 45.0%
TCCTGATTGGTAGATTGGGT+TGG + tig0040172:2285-2304 Msa1459270:intron 45.0%
CCTGATTGGTAGATTGGGTT+GGG + tig0040172:2286-2305 Msa1459270:intron 45.0%
TCAAGAAGTGATGCAGCGTA+TGG + tig0040172:2547-2566 Msa1459270:CDS 45.0%
ACATACTTCTCCCTCTTTGG+GGG - tig0040172:2580-2599 None:intergenic 45.0%
CACATACTTCTCCCTCTTTG+GGG - tig0040172:2581-2600 None:intergenic 45.0%
CTCACATACTTCTCCCTCTT+TGG - tig0040172:2583-2602 None:intergenic 45.0%
ACGCTTTGCCAGTTCAACAA+GGG - tig0040172:2713-2732 None:intergenic 45.0%
AACGCTTTGCCAGTTCAACA+AGG - tig0040172:2714-2733 None:intergenic 45.0%
AGAGTTTGAGCCTCTCAGTA+TGG + tig0040172:2795-2814 Msa1459270:CDS 45.0%
CTGCTTCACTTGGAGCATAT+AGG + tig0040172:3000-3019 Msa1459270:intron 45.0%
!! GGCTGCTAGCAATGTTTTGA+TGG + tig0040172:3066-3085 Msa1459270:intron 45.0%
TAGTACTAGGCCTAGAGTCT+TGG + tig0040172:3215-3234 Msa1459270:intron 45.0%
AACCTACCTACCAAGACTCT+AGG - tig0040172:3228-3247 None:intergenic 45.0%
AGAGTCTTGGTAGGTAGGTT+TGG + tig0040172:3228-3247 Msa1459270:intron 45.0%
GAGTCTTGGTAGGTAGGTTT+GGG + tig0040172:3229-3248 Msa1459270:intron 45.0%
AAAACAAAAAAGGAGGGGGG+GGG - tig0040172:3370-3389 None:intergenic 45.0%
CAAAACAAAAAAGGAGGGGG+GGG - tig0040172:3371-3390 None:intergenic 45.0%
TCCTCCAGTTGTAACAGTGA+TGG + tig0040172:3527-3546 Msa1459270:CDS 45.0%
CCTCCAGTTGTAACAGTGAT+GGG + tig0040172:3528-3547 Msa1459270:CDS 45.0%
TGACCCATCACTGTTACAAC+TGG - tig0040172:3534-3553 None:intergenic 45.0%
!! GTGATGGGTCATGTTGATCA+CGG + tig0040172:3543-3562 Msa1459270:CDS 45.0%
! TTGACGCAAGGCATCAAGAA+GGG - tig0040172:3577-3596 None:intergenic 45.0%
! TTTGACGCAAGGCATCAAGA+AGG - tig0040172:3578-3597 None:intergenic 45.0%
ATCACATTTCTCGACACTCC+TGG + tig0040172:3678-3697 Msa1459270:CDS 45.0%
CTAGTTGTTGCTGCAGATGA+CGG + tig0040172:3759-3778 Msa1459270:CDS 45.0%
GACACAGCTTCAAGTGTTTG+GGG - tig0040172:3792-3811 None:intergenic 45.0%
GGACACAGCTTCAAGTGTTT+GGG - tig0040172:3793-3812 None:intergenic 45.0%
GTTTCCGCGCTTAAAAAGAC+TGG + tig0040172:3958-3977 Msa1459270:three_prime_UTR 45.0%
!! CAGTCCAGTCTTTTTAAGCG+CGG - tig0040172:3965-3984 None:intergenic 45.0%
GAAGGAGTAAAGCTTCCTCT+AGG - tig0040172:3993-4012 None:intergenic 45.0%
AGAGGAAGCTTTACTCCTTC+AGG + tig0040172:3993-4012 Msa1459270:three_prime_UTR 45.0%
ACTCCTTCAGGCTGATATGA+TGG + tig0040172:4005-4024 Msa1459270:three_prime_UTR 45.0%
GATCCATCATATCAGCCTGA+AGG - tig0040172:4011-4030 None:intergenic 45.0%
TCAACCACATATGCTTGAGC+AGG - tig0040172:4054-4073 None:intergenic 45.0%
AGCAAGACTTGACAAAGGAC+GGG + tig0040172:4074-4093 Msa1459270:three_prime_UTR 45.0%
GTGACTACTATAGTGAAGGC+AGG + tig0040172:4105-4124 Msa1459270:three_prime_UTR 45.0%
! AAGGCAGGAACTCTAGTTTG+TGG + tig0040172:4120-4139 Msa1459270:three_prime_UTR 45.0%
! TCTAGTTTGTGGACAGCATG+TGG + tig0040172:4131-4150 Msa1459270:three_prime_UTR 45.0%
CTCGCAGTGGGGAAAAATAA+GGG + tig0040172:4161-4180 Msa1459270:three_prime_UTR 45.0%
AGGGCTATTAAAGATGCAGC+AGG + tig0040172:4180-4199 Msa1459270:three_prime_UTR 45.0%
GGGCTATTAAAGATGCAGCA+GGG + tig0040172:4181-4200 Msa1459270:three_prime_UTR 45.0%
CTATTAAAGATGCAGCAGGG+AGG + tig0040172:4184-4203 Msa1459270:three_prime_UTR 45.0%
CAATGCCTGTGGAGATTGAA+GGG + tig0040172:4229-4248 Msa1459270:three_prime_UTR 45.0%
! TGTTGTTCATTCTGAGGAGC+GGG + tig0040172:4287-4306 Msa1459270:three_prime_UTR 45.0%
TTTGAAGAGGACAGGCTTAG+GGG + tig0040172:4342-4361 Msa1459270:three_prime_UTR 45.0%
ATACTGAGGAGGTTCCAAAG+AGG + tig0040172:4397-4416 Msa1459270:three_prime_UTR 45.0%
TACTGAGGAGGTTCCAAAGA+GGG + tig0040172:4398-4417 Msa1459270:three_prime_UTR 45.0%
GGTTCCAAAGAGGGTTGAAA+TGG + tig0040172:4407-4426 Msa1459270:three_prime_UTR 45.0%
! ACTGCCATTTCAACCCTCTT+TGG - tig0040172:4414-4433 None:intergenic 45.0%
ACAAAGAACAAGGACGTGGA+AGG + tig0040172:4577-4596 Msa1459270:intron 45.0%
AATGTTGTCCATGTTGGCGT+GGG + tig0040172:4913-4932 Msa1459270:three_prime_UTR 45.0%
TCCACGTCGGATTGAGAAAT+AGG - tig0040172:4940-4959 None:intergenic 45.0%
GCTTGGGTAAGAGAAATAGG+TGG - tig0040172:5012-5031 None:intergenic 45.0%
GCTGCTTGGGTAAGAGAAAT+AGG - tig0040172:5015-5034 None:intergenic 45.0%
AGCAACTCGTGCTAGTATCA+AGG + tig0040172:5032-5051 Msa1459270:three_prime_UTR 45.0%
!! TCTACTGGCTCGGTTAAACT+GGG - tig0040172:5211-5230 None:intergenic 45.0%
! TGTGAAATGGTCTACTGGCT+CGG - tig0040172:5221-5240 None:intergenic 45.0%
!! CCGTTTGGTTTGGTTTGGTT+TGG + tig0040172:5589-5608 Msa1459270:intron 45.0%
TGGCTACGTCTTCCAATAAG+TGG - tig0040172:5641-5660 None:intergenic 45.0%
! TTGATAATAGAGAAGGCCCC+AGG + tig0040172:5663-5682 Msa1459270:three_prime_UTR 45.0%
GGACCTGATGTGAAAATAGC+TGG + tig0040172:5759-5778 Msa1459270:three_prime_UTR 45.0%
GCTGGTTGCAAAGTTGTTGA+AGG + tig0040172:5777-5796 Msa1459270:three_prime_UTR 45.0%
! GCTTCTAAGGAGTGGTGAAA+TGG + tig0040172:5827-5846 Msa1459270:three_prime_UTR 45.0%
GACCTTGTTCGTCTCTTAAG+AGG + tig0040172:5859-5878 Msa1459270:three_prime_UTR 45.0%
TCCCTCTTAAGAGACGAACA+AGG - tig0040172:5864-5883 None:intergenic 45.0%
!! ATAGAGTGCTGACGAAAAGC+TGG + tig0040172:6035-6054 Msa1459270:three_prime_UTR 45.0%
TCCATACTTTGCTAGAGCTG+CGG - tig0040172:6245-6264 None:intergenic 45.0%
GCTCCGACTAACACATTGGA+TGG - tig0040172:1250-1269 None:intergenic 50.0%
TCCAATGTGTTAGTCGGAGC+TGG + tig0040172:1250-1269 Msa1459270:five_prime_UTR 50.0%
TCCAGCTCCGACTAACACAT+TGG - tig0040172:1254-1273 None:intergenic 50.0%
CCCCTGCACATGGATAATTG+TGG - tig0040172:1675-1694 None:intergenic 50.0%
TGATGTTGCAGCCAAAGCTC+TGG - tig0040172:1793-1812 None:intergenic 50.0%
CACTCATGTATAGGTGTGGC+TGG + tig0040172:1998-2017 Msa1459270:CDS 50.0%
!! AGGTGTGGCTGGTTTAGTAG+GGG + tig0040172:2009-2028 Msa1459270:CDS 50.0%
TTGGCCTATGCATGGTGAGT+AGG + tig0040172:2136-2155 Msa1459270:intron 50.0%
TGGCCTATGCATGGTGAGTA+GGG + tig0040172:2137-2156 Msa1459270:intron 50.0%
TAGCCCTACTCACCATGCAT+AGG - tig0040172:2143-2162 None:intergenic 50.0%
TATGCATGGTGAGTAGGGCT+AGG + tig0040172:2142-2161 Msa1459270:intron 50.0%
CCCAACCCAATCTACCAATC+AGG - tig0040172:2289-2308 None:intergenic 50.0%
TCCATGCTAGCTCACAAGTC+TGG + tig0040172:2524-2543 Msa1459270:CDS 50.0%
ACCAGACTTGTGAGCTAGCA+TGG - tig0040172:2528-2547 None:intergenic 50.0%
! ATGGTTTGAAGCCCCCAAAG+AGG + tig0040172:2566-2585 Msa1459270:intron 50.0%
! TGGTTTGAAGCCCCCAAAGA+GGG + tig0040172:2567-2586 Msa1459270:intron 50.0%
GTGACTTTACAAGGGACGTG+TGG - tig0040172:2640-2659 None:intergenic 50.0%
AGGCATGACCCTTGTTGAAC+TGG + tig0040172:2702-2721 Msa1459270:CDS 50.0%
! GTTGAACTGGCAAAGCGTTC+TGG + tig0040172:2715-2734 Msa1459270:CDS 50.0%
GCATCTCCCCATTTGTCGTA+AGG + tig0040172:3151-3170 Msa1459270:intron 50.0%
ACTAGGCCTAGAGTCTTGGT+AGG + tig0040172:3219-3238 Msa1459270:intron 50.0%
ACTGTTACAACTGGAGGACG+TGG - tig0040172:3525-3544 None:intergenic 50.0%
CCCATCACTGTTACAACTGG+AGG - tig0040172:3531-3550 None:intergenic 50.0%
AGTAATGCCACCAGCTTCCT+TGG - tig0040172:3613-3632 None:intergenic 50.0%
GGTGGCATTACTCAGCATCT+AGG + tig0040172:3621-3640 Msa1459270:CDS 50.0%
TCAGCATCTAGGTGCCTTTG+TGG + tig0040172:3632-3651 Msa1459270:CDS 50.0%
CATCTAGGTGCCTTTGTGGT+GGG + tig0040172:3636-3655 Msa1459270:CDS 50.0%
TGATGACATGCCCACCACAA+AGG - tig0040172:3649-3668 None:intergenic 50.0%
!! TTTGTGGTGGGCATGTCATC+AGG + tig0040172:3648-3667 Msa1459270:CDS 50.0%
TTTAGTGCCATGCGAGCAAG+AGG + tig0040172:3711-3730 Msa1459270:CDS 50.0%
GGGACACAGCTTCAAGTGTT+TGG - tig0040172:3794-3813 None:intergenic 50.0%
!! TTCAGAGGGCTTGCTGTTAG+AGG + tig0040172:3905-3924 Msa1459270:CDS 50.0%
!! GGCTTGCTGTTAGAGGAGAT+GGG + tig0040172:3912-3931 Msa1459270:CDS 50.0%
! TTGCTGTTAGAGGAGATGGG+TGG + tig0040172:3915-3934 Msa1459270:CDS 50.0%
TGCTGTTAGAGGAGATGGGT+GGG + tig0040172:3916-3935 Msa1459270:CDS 50.0%
CGCGCTTAAAAAGACTGGAC+TGG + tig0040172:3963-3982 Msa1459270:three_prime_UTR 50.0%
! GACTGGACTGGATAACCTAG+AGG + tig0040172:3975-3994 Msa1459270:three_prime_UTR 50.0%
TGGTCCTGCTCAAGCATATG+TGG + tig0040172:4047-4066 Msa1459270:three_prime_UTR 50.0%
GCAAGACTTGACAAAGGACG+GGG + tig0040172:4075-4094 Msa1459270:three_prime_UTR 50.0%
TGTGGACAGCATGTGGTTGT+AGG + tig0040172:4138-4157 Msa1459270:three_prime_UTR 50.0%
GCTCGCAGTGGGGAAAAATA+AGG + tig0040172:4160-4179 Msa1459270:three_prime_UTR 50.0%
! TCAATCTCCACAGGCATTGC+TGG - tig0040172:4228-4247 None:intergenic 50.0%
GCAATGCCTGTGGAGATTGA+AGG + tig0040172:4228-4247 Msa1459270:three_prime_UTR 50.0%
TGGAGATTGAAGGGCTTCGA+GGG + tig0040172:4238-4257 Msa1459270:three_prime_UTR 50.0%
! CGGGCTAGAATGCTTAGTTC+TGG + tig0040172:4306-4325 Msa1459270:three_prime_UTR 50.0%
CACGTCCTTGTTCTTTGTGC+GGG - tig0040172:4575-4594 None:intergenic 50.0%
CCACGTCCTTGTTCTTTGTG+CGG - tig0040172:4576-4595 None:intergenic 50.0%
GAATGTTGTCCATGTTGGCG+TGG + tig0040172:4912-4931 Msa1459270:three_prime_UTR 50.0%
ATGTTGTCCATGTTGGCGTG+GGG + tig0040172:4914-4933 Msa1459270:three_prime_UTR 50.0%
! GCCTATTTCTCAATCCGACG+TGG + tig0040172:4936-4955 Msa1459270:three_prime_UTR 50.0%
! ACTAGCACGAGTTGCTGCTT+GGG - tig0040172:5028-5047 None:intergenic 50.0%
TACTAGCACGAGTTGCTGCT+TGG - tig0040172:5029-5048 None:intergenic 50.0%
!! GTCTACTGGCTCGGTTAAAC+TGG - tig0040172:5212-5231 None:intergenic 50.0%
CGAAGTGGGTCAAGATTCCT+GGG + tig0040172:5414-5433 Msa1459270:intron 50.0%
GCTCAGTTATTAAGGGCGGA+GGG + tig0040172:5457-5476 Msa1459270:intron 50.0%
TGAACAGGTCAGCAACCATG+AGG + tig0040172:5805-5824 Msa1459270:three_prime_UTR 50.0%
CAGCAACCATGAGGCTTCTA+AGG + tig0040172:5814-5833 Msa1459270:three_prime_UTR 50.0%
! ACCATGAGGCTTCTAAGGAG+TGG + tig0040172:5819-5838 Msa1459270:three_prime_UTR 50.0%
ACCACTCCTTAGAAGCCTCA+TGG - tig0040172:5823-5842 None:intergenic 50.0%
GTCTCTTAAGAGGGAGAAGC+AGG + tig0040172:5869-5888 Msa1459270:three_prime_UTR 50.0%
TAAGAGGGAGAAGCAGGATG+TGG + tig0040172:5875-5894 Msa1459270:three_prime_UTR 50.0%
! ACCGCAGCTCTAGCAAAGTA+TGG + tig0040172:6241-6260 Msa1459270:three_prime_UTR 50.0%
ATGGCGGCTTTGCTGAAGCT+TGG + tig0040172:1586-1605 Msa1459270:CDS 55.0%
GCATCAGCAAGATGCATGGC+TGG + tig0040172:1870-1889 Msa1459270:CDS 55.0%
!! GGTGTGGCTGGTTTAGTAGG+GGG + tig0040172:2010-2029 Msa1459270:CDS 55.0%
!!! GGGATGGGGGCACTTTTAAG+AGG + tig0040172:2206-2225 Msa1459270:intron 55.0%
GGCCTAGAGTCTTGGTAGGT+AGG + tig0040172:3223-3242 Msa1459270:intron 55.0%
AAAAAAGGAGGGGGGGGGAT+TGG - tig0040172:3365-3384 None:intergenic 55.0%
TGCCTTGCGTCAAACGTCAG+TGG + tig0040172:3584-3603 Msa1459270:CDS 55.0%
TGCCACTGACGTTTGACGCA+AGG - tig0040172:3589-3608 None:intergenic 55.0%
TCAAACGTCAGTGGCAGCCA+AGG + tig0040172:3593-3612 Msa1459270:CDS 55.0%
GCATCTAGGTGCCTTTGTGG+TGG + tig0040172:3635-3654 Msa1459270:CDS 55.0%
GCACTAAATGCAGCGTGACC+AGG - tig0040172:3699-3718 None:intergenic 55.0%
!! GGGCTTGCTGTTAGAGGAGA+TGG + tig0040172:3911-3930 Msa1459270:CDS 55.0%
GCTGTTAGAGGAGATGGGTG+GGG + tig0040172:3917-3936 Msa1459270:CDS 55.0%
GGAGATGGGTGGGGATATTC+AGG + tig0040172:3926-3945 Msa1459270:CDS 55.0%
TGACAAAGGACGGGGTCCAT+TGG + tig0040172:4083-4102 Msa1459270:three_prime_UTR 55.0%
ATGTGGTTGTAGGCTCGCAG+TGG + tig0040172:4148-4167 Msa1459270:three_prime_UTR 55.0%
TGTGGTTGTAGGCTCGCAGT+GGG + tig0040172:4149-4168 Msa1459270:three_prime_UTR 55.0%
AGCAACTCCAGCAATGCCTG+TGG + tig0040172:4218-4237 Msa1459270:three_prime_UTR 55.0%
CGAAGCCCTTCAATCTCCAC+AGG - tig0040172:4237-4256 None:intergenic 55.0%
GTGGAGATTGAAGGGCTTCG+AGG + tig0040172:4237-4256 Msa1459270:three_prime_UTR 55.0%
ATGACATCGTCACCGGCCAT+TGG - tig0040172:4267-4286 None:intergenic 55.0%
CCGCACAAAGAACAAGGACG+TGG + tig0040172:4573-4592 Msa1459270:intron 55.0%
AAATAGGCCCCACGCCAACA+TGG - tig0040172:4924-4943 None:intergenic 55.0%
GCTTGCGGTGCATGCATAGT+TGG + tig0040172:4970-4989 Msa1459270:three_prime_UTR 55.0%
!! CTGGCTCGGTTAAACTGGGA+CGG - tig0040172:5207-5226 None:intergenic 55.0%
GCGAAGTGGGTCAAGATTCC+TGG + tig0040172:5413-5432 Msa1459270:intron 55.0%
GGCTCAGTTATTAAGGGCGG+AGG + tig0040172:5456-5475 Msa1459270:intron 55.0%
! ACGTGTGGAGCGTCAACAGG+AGG - tig0040172:2625-2644 None:intergenic 60.0%
TCAGTGGCAGCCAAGGAAGC+TGG + tig0040172:3600-3619 Msa1459270:CDS 60.0%
TGCTGCACCTCTTGCTCGCA+TGG - tig0040172:3721-3740 None:intergenic 60.0%
GTGGTTGTAGGCTCGCAGTG+GGG + tig0040172:4150-4169 Msa1459270:three_prime_UTR 60.0%
GCTCGCCCGCACAAAGAACA+AGG + tig0040172:4567-4586 Msa1459270:intron 60.0%
ATCCGACGTGGACCTAGCAC+AGG + tig0040172:4948-4967 Msa1459270:three_prime_UTR 60.0%
AGCCTGTGCTAGGTCCACGT+CGG - tig0040172:4953-4972 None:intergenic 60.0%
GTGGACCTAGCACAGGCTTG+CGG + tig0040172:4955-4974 Msa1459270:three_prime_UTR 60.0%
ATGCACCGCAAGCCTGTGCT+AGG - tig0040172:4963-4982 None:intergenic 60.0%
GCTCGGTTAAACTGGGACGG+AGG - tig0040172:5204-5223 None:intergenic 60.0%
CTGAGTCTCGGGTGTACCTG+GGG - tig0040172:5682-5701 None:intergenic 60.0%
CCTGAGTCTCGGGTGTACCT+GGG - tig0040172:5683-5702 None:intergenic 60.0%
ACCTGAGTCTCGGGTGTACC+TGG - tig0040172:5684-5703 None:intergenic 60.0%
AGGTACACCCGAGACTCAGG+TGG + tig0040172:5683-5702 Msa1459270:three_prime_UTR 60.0%
TTGCCCAGCCACCTGAGTCT+CGG - tig0040172:5694-5713 None:intergenic 60.0%
! GTGGAGCGTCAACAGGAGGC+TGG - tig0040172:2621-2640 None:intergenic 65.0%
! GGGACGTGTGGAGCGTCAAC+AGG - tig0040172:2628-2647 None:intergenic 65.0%
GTGGCAGCCAAGGAAGCTGG+TGG + tig0040172:3603-3622 Msa1459270:CDS 65.0%
AGGGCTTCGAGGGCTGCCAA+TGG + tig0040172:4248-4267 Msa1459270:three_prime_UTR 65.0%
CTTCGAGGGCTGCCAATGGC+CGG + tig0040172:4252-4271 Msa1459270:three_prime_UTR 65.0%
CCCAGGTACACCCGAGACTC+AGG + tig0040172:5680-5699 Msa1459270:three_prime_UTR 65.0%
ACACCCGAGACTCAGGTGGC+TGG + tig0040172:5687-5706 Msa1459270:three_prime_UTR 65.0%
CACCCGAGACTCAGGTGGCT+GGG + tig0040172:5688-5707 Msa1459270:three_prime_UTR 65.0%
TGCCCAGCCACCTGAGTCTC+GGG - tig0040172:5693-5712 None:intergenic 65.0%
GGGGGGGGATTGGAGAGTGG+CGG - tig0040172:3355-3374 None:intergenic 70.0%
GAGGGGGGGGGATTGGAGAG+TGG - tig0040172:3358-3377 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0040172 gene 1198 6355 1198 ID=Msa1459270;Name=Msa1459270
tig0040172 mRNA 1198 6355 1198 ID=Msa1459270-mRNA-1;Parent=Msa1459270;Name=Msa1459270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=116|0.87|0.77|1|0.62|0.55|9|1441|334
tig0040172 exon 1198 1297 1198 ID=Msa1459270-mRNA-1:exon:22191;Parent=Msa1459270-mRNA-1
tig0040172 exon 1570 1615 1570 ID=Msa1459270-mRNA-1:exon:22192;Parent=Msa1459270-mRNA-1
tig0040172 exon 1771 1891 1771 ID=Msa1459270-mRNA-1:exon:22193;Parent=Msa1459270-mRNA-1
tig0040172 exon 1987 2052 1987 ID=Msa1459270-mRNA-1:exon:22194;Parent=Msa1459270-mRNA-1
tig0040172 exon 2519 2568 2519 ID=Msa1459270-mRNA-1:exon:22195;Parent=Msa1459270-mRNA-1
tig0040172 exon 2592 2840 2592 ID=Msa1459270-mRNA-1:exon:22196;Parent=Msa1459270-mRNA-1
tig0040172 exon 3468 4506 3468 ID=Msa1459270-mRNA-1:exon:22197;Parent=Msa1459270-mRNA-1
tig0040172 exon 4904 5053 4904 ID=Msa1459270-mRNA-1:exon:22198;Parent=Msa1459270-mRNA-1
tig0040172 exon 5615 6355 5615 ID=Msa1459270-mRNA-1:exon:22199;Parent=Msa1459270-mRNA-1
tig0040172 five_prime_UTR 1198 1297 1198 ID=Msa1459270-mRNA-1:five_prime_utr;Parent=Msa1459270-mRNA-1
tig0040172 five_prime_UTR 1570 1585 1570 ID=Msa1459270-mRNA-1:five_prime_utr;Parent=Msa1459270-mRNA-1
tig0040172 CDS 1586 1615 1586 ID=Msa1459270-mRNA-1:cds;Parent=Msa1459270-mRNA-1
tig0040172 CDS 1771 1891 1771 ID=Msa1459270-mRNA-1:cds;Parent=Msa1459270-mRNA-1
tig0040172 CDS 1987 2052 1987 ID=Msa1459270-mRNA-1:cds;Parent=Msa1459270-mRNA-1
tig0040172 CDS 2519 2568 2519 ID=Msa1459270-mRNA-1:cds;Parent=Msa1459270-mRNA-1
tig0040172 CDS 2592 2840 2592 ID=Msa1459270-mRNA-1:cds;Parent=Msa1459270-mRNA-1
tig0040172 CDS 3468 3956 3468 ID=Msa1459270-mRNA-1:cds;Parent=Msa1459270-mRNA-1
tig0040172 three_prime_UTR 3957 4506 3957 ID=Msa1459270-mRNA-1:three_prime_utr;Parent=Msa1459270-mRNA-1
tig0040172 three_prime_UTR 4904 5053 4904 ID=Msa1459270-mRNA-1:three_prime_utr;Parent=Msa1459270-mRNA-1
tig0040172 three_prime_UTR 5615 6355 5615 ID=Msa1459270-mRNA-1:three_prime_utr;Parent=Msa1459270-mRNA-1
Gene Sequence

>Msa1459270

ATGGCGGCTTTGCTGAAGCTTGGAAAGAAGAGAATATATATGAACTTTACCAGAGCTTTGGCTGCAACATCATGTAGGCATGTGGTAGGGTCAAGTTTTGCATCTATATTTGCTTCACAATCTGTTTATGCATCAGCAAGATGCATGGCTGATTTCATCAATCACTCATGTATAGGTGTGGCTGGTTTAGTAGGGGGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGCTCACAAGTCTGGTCAAGAAGTGATGCAGCGTATGAAGTATGTGAGAAAAGGCAGTAGAAACCAGCCTCCTGTTGACGCTCCACACGTCCCTTGTAAAGTCACTGCAACCAAATCTAATCCTGATAAAACGATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTTCTGGAAAATCAGTATCTTCTTTGCAAGATATTCTCACAACTGTTGGTGAAAAAATTCAATCAGAGTTTGAGCCTCTCAGTATGGATATTTCTGAGCTTGCTGCAATGGAAGTTGGCGTCAATGTTAAGAGGTTACATTCAACTGAAGGTAAAGAAGTTTTACCACGTCCTCCAGTTGTAACAGTGATGGGTCATGTTGATCACGGAAAAACTTCCCTTCTTGATGCCTTGCGTCAAACGTCAGTGGCAGCCAAGGAAGCTGGTGGCATTACTCAGCATCTAGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACATTTCTCGACACTCCTGGTCACGCTGCATTTAGTGCCATGCGAGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGACGGTGTAATGCCCCAAACACTTGAAGCTGTGTCCCATGCAAAATCAGCTAATGTACCAGTTGTAGTTGCAGTCAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTAAAACTACAGCTTGCTTCAGAGGGCTTGCTGTTAGAGGAGATGGGTGGGGATATTCAGGTTTGTTGA
Protein sequence

>Msa1459270

MAALLKLGKKRIYMNFTRALAATSCRHVVGSSFASIFASQSVYASARCMADFINHSCIGVAGLVGGLKNVEYGASMLAHKSGQEVMQRMKYVRKGSRNQPPVDAPHVPCKVTATKSNPDKTIEIFEGMTLVELAKRSGKSVSSLQDILTTVGEKIQSEFEPLSMDISELAAMEVGVNVKRLHSTEGKEVLPRPPVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAVSHAKSANVPVVVAVNKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVC*