AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0949590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0949590 MtrunA17_Chr6g0464871 90.517 464 38 2 7 464 5 468 0.0 856
Msa0949590 MtrunA17_Chr6g0464841 83.807 457 68 2 15 465 1 457 0.0 785
Msa0949590 MtrunA17_Chr6g0464861 82.018 456 77 2 15 465 1 456 0.0 763
Msa0949590 MtrunA17_Chr6g0464881 63.636 451 158 2 15 459 1 451 0.0 605
Msa0949590 MtrunA17_Chr6g0464921 59.607 458 178 4 15 465 1 458 0.0 563
Msa0949590 MtrunA17_Chr7g0249981 54.818 467 205 3 1 462 1 466 0.0 526
Msa0949590 MtrunA17_Chr7g0249931 51.183 465 216 7 9 464 23 485 2.53e-168 483
Msa0949590 MtrunA17_Chr7g0250001 52.477 444 205 3 24 462 5 447 3.70e-166 476
Msa0949590 MtrunA17_Chr5g0414331 48.667 450 224 3 15 459 3 450 5.51e-158 456
Msa0949590 MtrunA17_Chr5g0414321 47.333 450 230 3 15 459 1 448 5.57e-152 440
Msa0949590 MtrunA17_Chr8g0380531 45.595 454 235 4 17 459 2 454 4.14e-139 407
Msa0949590 MtrunA17_Chr7g0250021 48.726 314 152 5 24 330 11 322 3.95e-103 310
Msa0949590 MtrunA17_Chr7g0249961 63.713 237 84 2 227 462 24 259 2.48e-101 304
Msa0949590 MtrunA17_Chr1g0207981 38.445 463 251 11 25 459 13 469 2.28e-98 303
Msa0949590 MtrunA17_Chr3g0121991 37.736 477 258 13 20 463 76 546 5.65e-96 300
Msa0949590 MtrunA17_Chr8g0377921 40.430 465 235 16 27 459 6 460 9.06e-94 291
Msa0949590 MtrunA17_Chr8g0377941 39.915 471 236 16 21 459 3 458 8.52e-91 284
Msa0949590 MtrunA17_Chr3g0122001 38.771 472 252 14 20 459 483 949 8.32e-89 290
Msa0949590 MtrunA17_Chr3g0122001 38.266 473 254 16 20 459 3 470 1.62e-84 279
Msa0949590 MtrunA17_Chr3g0098111 35.684 468 258 14 25 459 9 466 7.56e-85 268
Msa0949590 MtrunA17_Chr1g0207861 36.752 468 255 14 24 459 7 465 2.87e-84 267
Msa0949590 MtrunA17_Chr1g0161351 35.983 478 270 14 11 459 24 494 2.53e-83 265
Msa0949590 MtrunA17_Chr1g0207971 33.623 461 262 13 25 459 8 450 1.51e-80 257
Msa0949590 MtrunA17_Chr8g0365811 34.151 489 277 13 6 459 476 954 2.52e-79 265
Msa0949590 MtrunA17_Chr8g0365811 33.617 470 267 15 27 459 11 472 2.52e-71 243
Msa0949590 MtrunA17_Chr1g0207951 31.818 484 284 12 2 459 104 567 6.25e-77 260
Msa0949590 MtrunA17_Chr1g0207951 33.740 492 280 16 2 464 636 1110 1.47e-73 251
Msa0949590 MtrunA17_Chr4g0053501 35.281 462 263 13 25 460 11 462 1.45e-76 248
Msa0949590 MtrunA17_Chr5g0401721 33.619 467 267 11 27 459 10 467 2.46e-75 244
Msa0949590 MtrunA17_Chr1g0207831 32.972 461 271 13 27 459 10 460 2.07e-73 239
Msa0949590 MtrunA17_Chr5g0393591 33.405 464 236 13 23 459 15 432 3.90e-72 235
Msa0949590 MtrunA17_Chr4g0053321 33.843 458 271 12 27 460 28 477 6.27e-69 228
Msa0949590 MtrunA17_Chr1g0207931 32.990 485 245 14 7 465 70 500 6.92e-69 228
Msa0949590 MtrunA17_Chr2g0278711 33.051 472 272 15 25 460 11 474 1.21e-68 226
Msa0949590 MtrunA17_Chr5g0426431 32.704 477 271 15 22 459 9 474 2.22e-66 220
Msa0949590 MtrunA17_Chr3g0092641 32.468 462 263 14 22 445 9 459 2.15e-65 218
Msa0949590 MtrunA17_Chr7g0218811 31.466 464 261 13 23 459 13 446 3.21e-63 211
Msa0949590 MtrunA17_Chr3g0118711 31.290 473 279 12 25 459 13 477 7.91e-63 211
Msa0949590 MtrunA17_Chr3g0118671 30.149 471 289 11 25 460 6 471 1.63e-62 210
Msa0949590 MtrunA17_Chr6g0454191 30.316 475 284 14 25 459 10 477 4.62e-61 206
Msa0949590 MtrunA17_Chr3g0118771 29.376 497 301 14 1 459 1 485 5.13e-60 204
Msa0949590 MtrunA17_Chr3g0078841 28.067 481 292 11 21 459 6 474 2.14e-59 202
Msa0949590 MtrunA17_Chr6g0454341 28.481 474 299 10 21 459 6 474 3.85e-59 201
Msa0949590 MtrunA17_Chr3g0118701 30.297 472 285 14 25 459 15 479 5.25e-59 201
Msa0949590 MtrunA17_Chr7g0218791 31.847 471 251 17 25 459 5 441 7.28e-59 200
Msa0949590 MtrunA17_Chr7g0218821 30.818 477 258 16 23 459 3 447 1.05e-58 199
Msa0949590 MtrunA17_Chr3g0118691 29.661 472 288 14 25 459 15 479 4.75e-58 199
Msa0949590 MtrunA17_Chr6g0454301 28.660 485 304 13 12 459 248 727 8.30e-58 203
Msa0949590 MtrunA17_Chr6g0454301 31.915 235 145 7 239 465 7 234 1.29e-31 128
Msa0949590 MtrunA17_Chr6g0454181 29.560 477 284 13 25 459 10 476 8.95e-58 198
Msa0949590 MtrunA17_Chr7g0218831 30.065 459 275 12 23 460 4 437 1.04e-57 196
Msa0949590 MtrunA17_Chr6g0454401 29.209 493 288 16 21 465 6 485 1.11e-57 197
Msa0949590 MtrunA17_Chr5g0431421 30.000 460 283 12 21 460 6 446 1.14e-57 197
Msa0949590 MtrunA17_Chr6g0454141 29.350 477 285 14 25 459 10 476 3.43e-57 196
Msa0949590 MtrunA17_Chr4g0050341 29.940 501 281 14 9 459 7 487 3.71e-57 196
Msa0949590 MtrunA17_Chr6g0454321 29.462 465 284 12 21 448 6 463 7.24e-57 199
Msa0949590 MtrunA17_Chr8g0336331 28.033 478 295 11 21 459 6 473 1.60e-56 194
Msa0949590 MtrunA17_Chr6g0453961 29.325 474 290 12 25 459 19 486 2.49e-56 194
Msa0949590 MtrunA17_Chr7g0218841 30.152 461 273 12 23 460 4 438 4.20e-56 192
Msa0949590 MtrunA17_Chr7g0217881 29.694 458 290 12 25 459 10 458 1.93e-55 191
Msa0949590 MtrunA17_Chr8g0359821 28.814 472 292 12 25 459 10 474 1.99e-55 191
Msa0949590 MtrunA17_Chr5g0431401 30.258 466 274 16 21 460 6 446 2.94e-55 190
Msa0949590 MtrunA17_Chr6g0453951 28.425 489 296 13 14 459 46 523 4.06e-55 192
Msa0949590 MtrunA17_Chr5g0431361 28.696 460 292 12 21 460 8 451 4.49e-55 190
Msa0949590 MtrunA17_Chr5g0412111 31.144 472 270 18 25 459 5 458 1.62e-54 189
Msa0949590 MtrunA17_Chr6g0452771 29.598 473 289 12 25 459 10 476 4.40e-54 188
Msa0949590 MtrunA17_Chr7g0243931 28.485 495 300 11 10 459 2 487 1.67e-53 187
Msa0949590 MtrunA17_Chr4g0044511 29.209 493 294 15 8 459 23 501 3.02e-53 186
Msa0949590 MtrunA17_Chr5g0419771 30.738 488 271 17 25 459 36 509 3.26e-53 186
Msa0949590 MtrunA17_Chr7g0243681 29.000 500 276 19 15 459 1 476 3.33e-53 186
Msa0949590 MtrunA17_Chr6g0454261 28.151 476 292 12 25 459 10 476 4.52e-53 185
Msa0949590 MtrunA17_Chr6g0454201 28.810 479 285 13 25 459 11 477 6.37e-53 185
Msa0949590 MtrunA17_Chr4g0066221 31.237 477 280 15 28 464 14 482 1.34e-52 184
Msa0949590 MtrunA17_Chr3g0112761 32.747 455 268 15 27 460 10 447 1.94e-52 183
Msa0949590 MtrunA17_Chr6g0454331 27.521 476 297 14 25 459 7 475 1.95e-52 184
Msa0949590 MtrunA17_Chr6g0454211 28.782 476 289 13 25 459 297 763 2.38e-52 188
Msa0949590 MtrunA17_Chr6g0454211 30.288 208 108 5 174 376 61 236 2.38e-19 91.3
Msa0949590 MtrunA17_Chr3g0118661 29.474 475 296 11 25 465 13 482 2.52e-52 183
Msa0949590 MtrunA17_Chr6g0454291 27.579 475 296 13 25 459 7 473 2.64e-52 183
Msa0949590 MtrunA17_Chr5g0412101 31.116 466 280 16 25 459 12 467 8.42e-52 182
Msa0949590 MtrunA17_Chr5g0423981 27.632 456 285 10 25 459 10 441 1.47e-51 180
Msa0949590 MtrunA17_Chr7g0243781 30.020 493 272 18 18 459 2 472 2.60e-51 181
Msa0949590 MtrunA17_Chr5g0431441 29.462 465 280 16 25 460 18 463 2.95e-51 180
Msa0949590 MtrunA17_Chr6g0454361 27.917 480 288 14 25 459 11 477 3.20e-51 180
Msa0949590 MtrunA17_Chr4g0066201 30.426 470 270 17 28 459 21 471 3.27e-51 180
Msa0949590 MtrunA17_Chr6g0454151 28.631 482 293 15 17 459 5 474 3.28e-51 180
Msa0949590 MtrunA17_Chr3g0106231 29.247 465 289 15 13 459 6 448 6.00e-51 179
Msa0949590 MtrunA17_Chr5g0412131 31.224 474 284 17 17 459 4 466 1.06e-50 179
Msa0949590 MtrunA17_Chr4g0060511 28.088 502 286 16 15 459 1 484 1.55e-50 179
Msa0949590 MtrunA17_Chr6g0454351 27.403 489 270 15 21 459 8 461 1.57e-50 178
Msa0949590 MtrunA17_Chr7g0243631 29.079 478 289 15 25 459 13 483 2.78e-50 178
Msa0949590 MtrunA17_Chr8g0366391 30.472 466 277 16 25 451 9 466 3.11e-50 178
Msa0949590 MtrunA17_Chr5g0431371 28.166 458 290 13 23 460 8 446 3.85e-50 177
Msa0949590 MtrunA17_Chr3g0118751 28.051 467 273 13 25 459 6 441 4.59e-50 176
Msa0949590 MtrunA17_Chr7g0275681 31.429 490 257 22 21 455 8 473 5.52e-50 177
Msa0949590 MtrunA17_Chr1g0179901 29.278 485 283 17 25 459 16 490 6.27e-50 177
Msa0949590 MtrunA17_Chr4g0044501 29.348 460 287 14 25 451 10 464 1.04e-49 176
Msa0949590 MtrunA17_Chr1g0159551 28.541 473 270 15 30 464 19 461 1.07e-49 176
Msa0949590 MtrunA17_Chr7g0243771 29.607 483 276 14 25 459 6 472 1.38e-49 176
Msa0949590 MtrunA17_Chr7g0243951 27.551 490 300 13 15 459 1 480 1.89e-49 176
Msa0949590 MtrunA17_Chr6g0454131 27.907 473 296 13 25 459 10 475 2.89e-49 175
Msa0949590 MtrunA17_Chr7g0232411 29.388 490 260 16 25 460 6 463 3.16e-49 175
Msa0949590 MtrunA17_Chr7g0232391 29.317 498 250 17 25 460 6 463 3.88e-49 174
Msa0949590 MtrunA17_Chr7g0243871 28.628 503 263 17 18 459 2 469 5.06e-49 174
Msa0949590 MtrunA17_Chr6g0454121 27.883 477 291 13 25 459 10 475 8.79e-49 174
Msa0949590 MtrunA17_Chr8g0373301 28.392 479 277 14 23 458 7 462 1.71e-48 172
Msa0949590 MtrunA17_Chr6g0463861 28.364 483 292 15 14 459 5 470 2.02e-48 173
Msa0949590 MtrunA17_Chr7g0243861 28.513 491 293 14 16 459 5 484 2.17e-48 173
Msa0949590 MtrunA17_Chr7g0235051 28.866 485 262 15 15 455 1 446 2.18e-48 172
Msa0949590 MtrunA17_Chr1g0173121 27.926 487 277 16 16 460 6 460 4.26e-48 171
Msa0949590 MtrunA17_Chr7g0232401 29.574 470 283 14 25 458 6 463 1.06e-47 171
Msa0949590 MtrunA17_Chr7g0265141 30.515 485 276 19 25 459 9 482 1.45e-47 171
Msa0949590 MtrunA17_Chr7g0243761 29.448 489 263 17 15 459 1 451 1.79e-47 170
Msa0949590 MtrunA17_Chr3g0112771 32.911 474 247 21 15 451 1 440 3.62e-47 169
Msa0949590 MtrunA17_Chr7g0243801 28.773 497 278 14 15 459 1 473 5.52e-47 169
Msa0949590 MtrunA17_Chr4g0066151 28.163 490 298 17 9 459 2 476 5.98e-47 169
Msa0949590 MtrunA17_Chr7g0265101 29.184 490 277 19 25 459 9 483 8.59e-47 169
Msa0949590 MtrunA17_Chr8g0347281 29.025 472 272 14 28 459 21 469 9.50e-47 168
Msa0949590 MtrunA17_Chr8g0382021 27.660 470 279 15 30 460 39 486 9.84e-47 168
Msa0949590 MtrunA17_Chr4g0044481 30.750 400 229 12 22 399 24 397 1.25e-46 167
Msa0949590 MtrunA17_Chr5g0426401 34.892 278 170 4 174 445 20 292 1.42e-46 163
Msa0949590 MtrunA17_Chr4g0066131 27.932 469 286 15 29 459 17 471 1.44e-46 168
Msa0949590 MtrunA17_Chr6g0463851 28.916 498 279 16 14 459 5 479 2.06e-46 167
Msa0949590 MtrunA17_Chr4g0014061 29.915 468 282 14 28 459 12 469 3.17e-46 167
Msa0949590 MtrunA17_Chr3g0118721 34.343 297 170 7 177 459 1 286 3.99e-46 162
Msa0949590 MtrunA17_Chr8g0347271 28.657 499 273 18 10 459 6 470 4.13e-46 166
Msa0949590 MtrunA17_Chr5g0440421 28.455 492 294 18 25 464 10 495 4.16e-46 167
Msa0949590 MtrunA17_Chr4g0066261 29.375 480 276 17 28 459 14 478 5.18e-46 166
Msa0949590 MtrunA17_Chr6g0459311 30.261 499 262 21 18 464 9 473 8.36e-46 166
Msa0949590 MtrunA17_Chr7g0275511 30.290 482 257 16 26 456 16 469 2.16e-45 164
Msa0949590 MtrunA17_Chr8g0361371 28.189 486 286 14 17 459 2 467 2.24e-45 164
Msa0949590 MtrunA17_Chr8g0334851 28.898 481 271 18 18 451 2 458 3.40e-45 164
Msa0949590 MtrunA17_Chr7g0232311 28.689 488 264 16 25 460 6 461 4.16e-45 163
Msa0949590 MtrunA17_Chr6g0462571 29.462 465 268 17 28 451 5 450 4.56e-45 164
Msa0949590 MtrunA17_Chr8g0334861 29.228 479 284 14 18 460 2 461 1.37e-44 162
Msa0949590 MtrunA17_Chr8g0335141 30.000 480 264 19 28 460 12 466 1.41e-44 162
Msa0949590 MtrunA17_Chr3g0106251 37.597 258 141 7 209 459 46 290 1.53e-44 158
Msa0949590 MtrunA17_Chr7g0265111 29.116 498 266 21 25 459 39 512 1.55e-44 163
Msa0949590 MtrunA17_Chr6g0486251 35.014 357 175 15 136 456 123 458 2.16e-44 161
Msa0949590 MtrunA17_Chr6g0486201 35.014 357 175 15 136 456 123 458 2.16e-44 161
Msa0949590 MtrunA17_Chr7g0243851 27.743 483 267 15 15 459 1 439 2.18e-44 161
Msa0949590 MtrunA17_Chr5g0432731 36.398 261 151 7 206 460 43 294 2.74e-44 157
Msa0949590 MtrunA17_Chr5g0448521 27.311 476 269 17 27 451 7 456 5.05e-44 160
Msa0949590 MtrunA17_Chr8g0370941 29.412 493 261 19 24 451 7 477 5.20e-44 161
Msa0949590 MtrunA17_Chr8g0374971 28.333 480 279 18 28 459 15 477 5.32e-44 161
Msa0949590 MtrunA17_Chr8g0336651 29.253 482 284 13 17 457 773 1238 8.49e-44 165
Msa0949590 MtrunA17_Chr8g0336651 29.140 477 273 14 25 458 6 460 7.69e-43 162
Msa0949590 MtrunA17_Chr8g0336651 36.400 250 132 5 212 458 545 770 4.78e-38 148
Msa0949590 MtrunA17_Chr4g0032331 28.635 447 272 16 20 439 2 428 1.25e-43 159
Msa0949590 MtrunA17_Chr6g0449931 28.423 482 284 13 18 458 2 463 1.26e-43 159
Msa0949590 MtrunA17_Chr8g0335161 28.601 486 275 18 19 458 3 462 1.26e-43 159
Msa0949590 MtrunA17_Chr7g0232331 27.406 478 284 15 24 458 5 462 1.41e-43 159
Msa0949590 MtrunA17_Chr8g0336741 28.662 471 285 13 24 458 12 467 1.69e-43 159
Msa0949590 MtrunA17_Chr8g0336691 28.773 497 267 15 17 458 911 1375 1.79e-43 164
Msa0949590 MtrunA17_Chr8g0336691 29.851 469 282 13 25 458 13 469 1.30e-42 161
Msa0949590 MtrunA17_Chr8g0336691 28.355 462 286 12 17 458 472 908 7.50e-39 150
Msa0949590 MtrunA17_Chr1g0153451 28.189 486 267 15 25 459 6 460 1.84e-43 159
Msa0949590 MtrunA17_Chr4g0044521 29.522 481 267 18 29 465 13 465 1.91e-43 159
Msa0949590 MtrunA17_Chr8g0339451 30.670 388 213 11 116 463 96 467 2.44e-43 159
Msa0949590 MtrunA17_Chr6g0462551 34.237 295 162 8 174 451 174 453 3.36e-43 159
Msa0949590 MtrunA17_Chr8g0339461 31.926 379 205 11 117 458 105 467 5.41e-43 158
Msa0949590 MtrunA17_Chr6g0462541 33.742 326 168 11 151 451 150 452 6.20e-43 158
Msa0949590 MtrunA17_Chr7g0265041 28.947 494 289 20 22 464 8 490 7.07e-43 158
Msa0949590 MtrunA17_Chr6g0454251 29.188 394 233 12 25 377 7 395 7.93e-43 155
Msa0949590 MtrunA17_Chr8g0336731 29.400 483 262 15 27 459 34 487 8.65e-43 158
Msa0949590 MtrunA17_Chr2g0294931 28.361 476 286 16 28 459 14 478 1.70e-42 157
Msa0949590 MtrunA17_Chr3g0079731 28.099 484 283 17 27 459 8 477 2.42e-42 156
Msa0949590 MtrunA17_Chr2g0307961 27.778 468 302 12 15 455 3 461 2.80e-42 156
Msa0949590 MtrunA17_Chr5g0428081 28.862 492 284 21 14 459 5 476 4.36e-42 155
Msa0949590 MtrunA17_Chr4g0011051 29.752 484 283 22 25 459 9 484 4.64e-42 155
Msa0949590 MtrunA17_Chr6g0462531 29.661 472 261 16 28 451 5 453 7.24e-42 154
Msa0949590 MtrunA17_Chr5g0419761 28.692 474 278 17 25 448 9 472 7.74e-42 155
Msa0949590 MtrunA17_Chr5g0401851 27.941 476 295 13 26 459 11 480 9.99e-42 155
Msa0949590 MtrunA17_Chr4g0066171 26.907 472 293 15 28 464 24 478 1.00e-41 154
Msa0949590 MtrunA17_Chr8g0339631 30.133 375 216 10 116 458 104 464 3.02e-41 153
Msa0949590 MtrunA17_Chr7g0265051 28.986 483 285 19 25 459 9 481 3.71e-41 153
Msa0949590 MtrunA17_Chr7g0232341 28.602 472 254 17 25 445 6 445 4.76e-41 152
Msa0949590 MtrunA17_Chr7g0265151 27.812 489 292 18 25 464 9 485 7.78e-41 152
Msa0949590 MtrunA17_Chr2g0294921 27.767 497 285 20 14 459 154 627 9.02e-41 154
Msa0949590 MtrunA17_Chr5g0429681 28.953 487 277 20 14 459 38 496 1.39e-40 152
Msa0949590 MtrunA17_Chr5g0429711 27.423 485 285 19 15 459 1 458 1.50e-40 151
Msa0949590 MtrunA17_Chr8g0374901 27.615 478 283 15 28 459 15 475 2.03e-40 151
Msa0949590 MtrunA17_Chr4g0066281 26.793 474 278 12 29 459 16 463 3.43e-40 150
Msa0949590 MtrunA17_Chr5g0416741 24.330 485 314 13 18 459 6 480 4.31e-40 150
Msa0949590 MtrunA17_Chr8g0334831 28.540 452 256 13 18 422 2 433 5.43e-40 150
Msa0949590 MtrunA17_Chr5g0448551 28.818 406 235 11 27 400 9 392 2.08e-39 147
Msa0949590 MtrunA17_Chr5g0410941 28.685 502 291 22 6 459 4 486 4.32e-39 147
Msa0949590 MtrunA17_Chr6g0462521 31.250 320 176 8 151 451 145 439 7.29e-39 146
Msa0949590 MtrunA17_Chr8g0374931 28.184 479 273 19 28 454 14 473 1.20e-38 146
Msa0949590 MtrunA17_Chr8g0339601 31.529 314 170 8 174 458 29 326 2.12e-38 142
Msa0949590 MtrunA17_Chr5g0442541 27.696 473 275 16 24 451 4 454 3.74e-38 144
Msa0949590 MtrunA17_Chr7g0218311 28.024 496 282 20 14 459 10 480 3.74e-38 145
Msa0949590 MtrunA17_Chr8g0374941 28.660 485 273 23 28 460 952 1415 4.67e-38 148
Msa0949590 MtrunA17_Chr8g0374941 28.056 499 280 20 5 444 448 926 1.11e-35 141
Msa0949590 MtrunA17_Chr8g0374941 29.253 482 273 24 14 448 5 465 9.26e-35 138
Msa0949590 MtrunA17_Chr8g0355221 29.570 372 218 11 122 459 122 483 8.74e-38 144
Msa0949590 MtrunA17_Chr5g0442561 24.797 492 288 15 24 459 4 469 2.33e-37 142
Msa0949590 MtrunA17_Chr5g0442601 25.673 483 283 16 24 451 403 864 4.83e-37 144
Msa0949590 MtrunA17_Chr5g0442601 35.897 156 76 4 265 397 182 336 2.00e-22 100
Msa0949590 MtrunA17_Chr5g0442521 25.257 487 295 16 24 459 4 472 5.04e-37 141
Msa0949590 MtrunA17_Chr8g0339441 38.462 208 107 3 272 458 218 425 5.34e-37 140
Msa0949590 MtrunA17_Chr6g0454271 28.369 282 190 4 184 459 8 283 7.63e-37 137
Msa0949590 MtrunA17_Chr5g0420801 25.988 481 296 13 21 464 3 460 1.25e-36 140
Msa0949590 MtrunA17_Chr6g0463891 27.557 479 290 17 27 459 14 481 1.31e-36 140
Msa0949590 MtrunA17_Chr4g0072771 26.216 473 276 15 25 459 25 462 1.72e-36 140
Msa0949590 MtrunA17_Chr8g0350881 27.859 481 282 18 27 459 14 477 1.73e-36 140
Msa0949590 MtrunA17_Chr4g0072761 26.282 468 287 17 21 459 11 449 2.25e-36 139
Msa0949590 MtrunA17_Chr1g0153461 36.408 206 113 3 272 459 4 209 2.54e-36 133
Msa0949590 MtrunA17_Chr7g0243811 30.025 393 227 13 37 399 1 375 6.45e-36 137
Msa0949590 MtrunA17_Chr7g0241781 28.706 425 256 16 25 434 9 401 1.92e-35 136
Msa0949590 MtrunA17_Chr5g0403641 26.681 476 271 14 25 458 59 498 2.52e-35 137
Msa0949590 MtrunA17_Chr6g0454221 35.751 193 115 3 272 459 39 227 3.09e-35 133
Msa0949590 MtrunA17_Chr7g0241801 28.169 426 261 14 25 436 9 403 5.01e-35 135
Msa0949590 MtrunA17_Chr8g0361411 26.180 466 292 14 24 459 7 450 2.28e-34 134
Msa0949590 MtrunA17_Chr4g0029151 27.753 454 266 15 21 438 16 443 2.30e-34 134
Msa0949590 MtrunA17_Chr4g0042931 28.541 473 289 16 21 459 3 460 2.80e-34 134
Msa0949590 MtrunA17_Chr8g0369341 25.203 492 296 17 21 464 3 470 4.30e-34 133
Msa0949590 MtrunA17_Chr2g0329111 26.337 486 292 18 27 461 8 478 1.21e-33 132
Msa0949590 MtrunA17_Chr5g0416821 23.944 497 292 15 16 459 7 470 1.26e-33 132
Msa0949590 MtrunA17_Chr5g0431431 37.946 224 121 8 174 394 116 324 1.48e-33 129
Msa0949590 MtrunA17_Chr4g0029131 27.234 470 261 18 15 438 1 435 1.53e-33 134
Msa0949590 MtrunA17_Chr1g0165701 28.338 367 226 10 122 459 122 480 2.88e-33 131
Msa0949590 MtrunA17_Chr8g0355011 24.561 399 225 9 90 459 7 358 2.89e-33 129
Msa0949590 MtrunA17_Chr2g0294941 27.390 387 239 13 108 460 1 379 4.04e-33 129
Msa0949590 MtrunA17_Chr5g0442491 24.131 489 297 14 24 459 4 471 1.27e-32 129
Msa0949590 MtrunA17_Chr7g0243711 35.885 209 116 4 269 459 105 313 1.32e-32 126
Msa0949590 MtrunA17_Chr7g0243611 32.107 299 185 6 130 419 2 291 1.61e-32 125
Msa0949590 MtrunA17_Chr5g0442581 24.532 481 291 14 24 451 4 465 2.59e-32 129
Msa0949590 MtrunA17_Chr1g0196851 25.877 456 275 13 21 438 45 475 2.97e-32 128
Msa0949590 MtrunA17_Chr1g0207881 46.565 131 66 2 332 459 252 381 5.21e-32 126
Msa0949590 MtrunA17_Chr1g0207881 26.007 273 168 9 25 284 8 259 5.60e-19 88.6
Msa0949590 MtrunA17_Chr5g0442511 25.427 468 276 14 24 451 48 482 8.21e-32 127
Msa0949590 MtrunA17_Chr5g0409591 27.234 470 258 15 28 434 7 455 1.37e-31 126
Msa0949590 MtrunA17_Chr2g0302961 24.947 469 293 15 32 459 12 462 1.38e-31 126
Msa0949590 MtrunA17_Chr6g0454371 33.520 179 108 4 294 465 1 175 2.71e-31 118
Msa0949590 MtrunA17_Chr3g0079711 36.612 183 95 4 298 459 3 185 1.53e-30 117
Msa0949590 MtrunA17_Chr6g0466841 26.453 499 273 20 16 464 8 462 4.98e-30 122
Msa0949590 MtrunA17_Chr6g0454171 31.274 259 146 6 211 459 70 306 7.67e-30 118
Msa0949590 MtrunA17_Chr2g0278721 26.211 454 282 16 19 434 511 949 7.71e-30 123
Msa0949590 MtrunA17_Chr2g0278721 26.122 490 288 20 15 462 5 462 2.63e-27 115
Msa0949590 MtrunA17_Chr6g0466831 26.230 488 288 20 16 464 8 462 9.33e-30 121
Msa0949590 MtrunA17_Chr7g0232351 29.064 406 201 18 25 376 6 378 1.15e-29 119
Msa0949590 MtrunA17_Chr7g0243911 38.947 190 97 4 272 444 22 209 1.76e-29 115
Msa0949590 MtrunA17_Chr4g0042891 32.450 302 150 11 177 459 196 462 2.11e-28 117
Msa0949590 MtrunA17_Chr4g0069611 26.205 477 283 21 25 464 15 459 1.18e-27 115
Msa0949590 MtrunA17_Chr8g0336251 25.667 487 282 17 25 464 7 460 1.39e-27 114
Msa0949590 MtrunA17_Chr8g0336321 25.667 487 282 17 25 464 7 460 1.94e-27 114
Msa0949590 MtrunA17_Chr8g0357361 38.071 197 112 7 215 406 64 255 2.90e-27 110
Msa0949590 MtrunA17_Chr2g0302991 25.000 460 301 11 32 459 12 459 6.38e-27 112
Msa0949590 MtrunA17_Chr8g0367221 36.723 177 102 5 273 440 1547 1722 9.36e-27 114
Msa0949590 MtrunA17_Chr8g0367221 36.158 177 103 5 273 440 1057 1232 1.14e-26 114
Msa0949590 MtrunA17_Chr8g0367221 32.520 246 139 10 208 440 214 445 6.16e-26 112
Msa0949590 MtrunA17_Chr6g0482061 26.078 487 287 18 15 449 1 466 2.64e-26 111
Msa0949590 MtrunA17_Chr5g0427571 29.699 266 167 7 209 464 39 294 9.09e-26 107
Msa0949590 MtrunA17_Chr6g0464091 27.250 400 245 14 25 393 18 402 9.14e-26 109
Msa0949590 MtrunA17_Chr8g0336261 38.571 140 75 4 294 426 1 136 6.50e-25 99.8
Msa0949590 MtrunA17_Chr7g0231631 28.846 260 151 5 218 459 13 256 9.43e-25 103
Msa0949590 MtrunA17_Chr2g0278741 24.850 499 283 19 15 462 87 544 1.52e-24 106
Msa0949590 MtrunA17_Chr2g0283041 23.769 467 290 16 23 447 5 447 6.22e-24 103
Msa0949590 MtrunA17_Chr2g0302851 30.870 230 144 7 212 434 213 434 9.58e-24 103
Msa0949590 MtrunA17_Chr4g0039881 31.739 230 142 7 212 434 189 410 1.66e-23 102
Msa0949590 MtrunA17_Chr3g0092031 31.818 198 121 7 274 464 6 196 2.24e-23 97.4
Msa0949590 MtrunA17_Chr4g0040691 24.948 477 289 16 25 457 8 459 2.97e-23 102
Msa0949590 MtrunA17_Chr4g0040711 25.786 477 285 17 25 457 8 459 4.82e-23 101
Msa0949590 MtrunA17_Chr7g0249971 50.602 83 41 0 15 97 1 83 7.05e-23 94.0
Msa0949590 MtrunA17_Chr7g0249971 54.902 51 23 0 177 227 83 133 4.05e-12 63.5
Msa0949590 MtrunA17_Chr4g0029161 25.427 468 244 20 15 438 1 407 3.16e-22 98.6
Msa0949590 MtrunA17_Chr6g0454231 29.004 231 124 5 209 438 2 193 5.14e-22 98.6
Msa0949590 MtrunA17_Chr6g0454231 23.707 232 148 7 21 223 246 477 2.51e-11 65.5
Msa0949590 MtrunA17_Chr2g0319761 27.097 465 272 19 25 446 8 448 5.92e-22 98.2
Msa0949590 MtrunA17_Chr4g0066141 35.570 149 82 4 325 459 200 348 6.27e-22 97.1
Msa0949590 MtrunA17_Chr8g0337381 36.719 128 67 2 337 458 2 121 2.07e-21 90.1
Msa0949590 MtrunA17_Chr2g0319731 25.328 458 288 17 15 440 18 453 1.40e-20 94.4
Msa0949590 MtrunA17_Chr2g0319801 23.799 458 295 16 15 440 1 436 9.03e-19 88.6
Msa0949590 MtrunA17_Chr2g0319751 22.538 457 269 19 25 444 8 416 1.51e-16 82.8
Msa0949590 MtrunA17_Chr2g0319751 23.555 467 276 17 25 444 485 917 1.28e-15 79.7
Msa0949590 MtrunA17_Chr2g0319791 33.152 184 112 5 272 444 257 440 5.62e-16 80.1
Msa0949590 MtrunA17_Chr8g0377911 33.333 126 81 2 21 143 3 128 1.66e-15 73.9
Msa0949590 MtrunA17_Chr5g0442501 25.455 330 203 12 24 331 4 312 2.08e-15 77.0
Msa0949590 MtrunA17_Chr1g0207911 25.000 240 153 7 27 243 10 245 4.69e-15 75.1
Msa0949590 MtrunA17_Chr7g0243731 45.946 74 40 0 334 407 6 79 1.10e-14 69.3
Msa0949590 MtrunA17_Chr6g0453981 30.601 183 109 6 151 318 25 204 5.59e-14 71.2
Msa0949590 MtrunA17_Chr8g0334841 34.591 159 83 5 174 328 1 142 5.98e-14 69.7
Msa0949590 MtrunA17_Chr7g0250011 58.696 46 19 0 378 423 1 46 8.02e-13 63.2
Msa0949590 MtrunA17_Chr8g0336271 22.541 244 151 6 21 231 6 244 1.59e-11 65.1
Msa0949590 MtrunA17_Chr6g0469961 32.168 143 89 4 174 314 28 164 3.19e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0949590 AT1G05680.1 45.333 450 235 5 24 463 5 453 1.05e-136 401
Msa0949590 AT1G05675.1 45.333 450 235 5 24 463 5 453 3.08e-136 400
Msa0949590 AT2G31790.1 44.348 460 236 9 15 460 1 454 3.63e-133 392
Msa0949590 AT2G43820.1 45.534 459 222 11 15 460 1 444 3.52e-132 389
Msa0949590 AT2G43840.2 44.053 454 236 9 15 460 1 444 2.42e-129 382
Msa0949590 AT2G43840.1 43.833 454 237 9 15 460 1 444 2.08e-128 380
Msa0949590 AT2G31750.1 42.794 451 239 8 24 460 7 452 1.91e-122 365
Msa0949590 AT2G31750.2 42.794 451 239 8 24 460 7 452 1.49e-121 364
Msa0949590 AT1G24100.1 41.138 457 247 9 24 464 10 460 3.19e-118 354
Msa0949590 AT4G15480.1 34.557 463 269 11 25 459 19 475 8.78e-84 266
Msa0949590 AT1G05560.1 35.914 465 247 14 25 459 5 448 2.36e-83 265
Msa0949590 AT3G21560.1 34.267 464 270 12 25 459 12 469 4.08e-83 265
Msa0949590 AT1G05560.2 35.914 465 247 14 25 459 55 498 4.15e-83 266
Msa0949590 AT4G15490.1 33.474 475 274 13 15 459 1 463 1.12e-80 258
Msa0949590 AT1G05530.1 35.484 465 258 15 25 462 5 454 9.08e-79 252
Msa0949590 AT4G15550.1 33.333 474 261 14 25 459 13 470 1.60e-74 242
Msa0949590 AT4G14090.1 33.991 456 264 13 25 459 13 452 2.01e-73 238
Msa0949590 AT1G22380.1 30.621 467 280 13 13 444 4 461 1.96e-68 226
Msa0949590 AT1G22400.1 29.474 475 292 12 25 462 13 481 2.93e-68 226
Msa0949590 AT4G15500.1 30.444 473 283 11 18 459 2 459 3.12e-68 226
Msa0949590 AT2G23260.1 31.140 456 280 13 25 460 10 451 1.07e-66 221
Msa0949590 AT1G22360.1 30.271 479 287 14 21 459 3 474 1.75e-66 221
Msa0949590 AT2G30140.1 33.333 459 267 15 21 459 9 448 1.63e-64 215
Msa0949590 AT2G30140.2 33.551 459 265 16 21 459 9 447 2.13e-64 215
Msa0949590 AT1G78270.1 31.590 478 283 15 25 465 13 483 3.64e-63 213
Msa0949590 AT1G22340.1 28.903 474 290 14 25 459 13 478 4.67e-63 212
Msa0949590 AT2G28080.1 28.633 461 285 9 29 459 22 468 6.87e-62 209
Msa0949590 AT1G22360.2 29.645 479 278 14 21 459 3 462 9.17e-62 208
Msa0949590 AT2G23250.1 29.730 444 278 14 34 460 7 433 2.49e-59 201
Msa0949590 AT2G30150.2 30.435 460 276 14 23 459 11 449 7.83e-59 200
Msa0949590 AT1G22370.2 30.088 452 278 13 25 445 13 457 2.06e-58 200
Msa0949590 AT3G02100.1 30.022 463 277 11 25 459 13 456 1.34e-57 197
Msa0949590 AT2G30150.1 30.396 454 272 14 29 459 1 433 1.93e-57 196
Msa0949590 AT2G36780.1 31.014 503 277 22 16 464 4 490 5.02e-57 196
Msa0949590 AT2G36970.1 29.278 485 287 15 14 460 2 468 6.09e-56 193
Msa0949590 AT2G36750.1 30.675 489 277 19 25 464 10 485 9.83e-56 193
Msa0949590 AT2G36800.1 29.400 483 287 18 20 456 7 481 6.84e-54 188
Msa0949590 AT2G36760.1 28.632 475 288 11 25 455 14 481 2.27e-53 187
Msa0949590 AT2G15480.1 28.016 489 277 18 25 459 10 477 2.76e-53 186
Msa0949590 AT2G15490.3 28.719 484 280 16 25 459 7 474 2.10e-52 184
Msa0949590 AT2G15490.1 29.218 486 278 17 25 459 7 477 4.37e-52 183
Msa0949590 AT2G15480.2 28.056 499 274 19 25 459 10 487 5.79e-52 183
Msa0949590 AT1G01420.2 31.770 469 262 15 15 445 1 449 2.87e-51 181
Msa0949590 AT2G36770.1 29.541 501 287 21 16 464 4 490 3.48e-51 181
Msa0949590 AT4G01070.1 29.167 480 283 13 15 456 1 461 3.80e-51 180
Msa0949590 AT1G01420.1 31.749 463 258 15 21 445 4 446 5.27e-50 177
Msa0949590 AT5G05870.1 29.701 468 289 12 15 459 1 451 1.23e-49 176
Msa0949590 AT3G46660.1 29.211 469 282 13 18 459 7 452 3.30e-49 175
Msa0949590 AT5G59590.1 29.114 474 276 16 17 459 2 446 7.11e-49 174
Msa0949590 AT1G10400.1 29.175 473 287 18 24 463 6 463 8.48e-48 171
Msa0949590 AT5G38010.1 29.854 479 273 13 14 459 2 450 1.12e-47 171
Msa0949590 AT4G34138.1 29.522 481 269 20 25 455 11 471 6.34e-47 169
Msa0949590 AT4G34131.1 27.310 487 290 17 25 463 10 480 6.92e-47 169
Msa0949590 AT5G38040.1 30.835 467 245 16 33 459 18 446 8.56e-47 168
Msa0949590 AT3G11340.1 29.605 456 275 14 27 460 11 442 2.21e-46 167
Msa0949590 AT5G26310.1 28.145 469 284 14 25 455 7 460 2.96e-46 167
Msa0949590 AT5G17050.1 27.097 465 287 15 19 455 9 449 4.06e-46 166
Msa0949590 AT3G46670.1 28.602 465 288 9 18 459 2 445 5.21e-46 166
Msa0949590 AT2G36790.1 28.056 499 298 18 15 464 3 489 1.40e-45 166
Msa0949590 AT5G59580.1 29.764 467 261 19 27 459 11 444 1.52e-45 165
Msa0949590 AT5G66690.1 29.185 466 283 13 25 455 7 460 2.14e-45 165
Msa0949590 AT4G34135.1 27.108 498 298 16 15 463 1 482 2.09e-44 162
Msa0949590 AT3G53150.1 28.195 493 282 18 25 456 22 503 2.38e-44 163
Msa0949590 AT2G29730.1 27.637 474 281 16 27 459 7 459 1.35e-43 160
Msa0949590 AT5G05900.1 30.277 469 280 15 20 462 3 450 3.93e-43 158
Msa0949590 AT3G53160.1 28.279 488 281 20 25 459 8 479 1.24e-42 157
Msa0949590 AT1G01390.1 28.481 474 289 12 22 459 5 464 2.16e-42 157
Msa0949590 AT3G46650.1 26.767 467 282 15 12 458 2 428 2.27e-42 155
Msa0949590 AT1G01390.2 28.785 469 284 12 25 457 25 479 2.87e-42 157
Msa0949590 AT2G16890.2 27.572 486 271 19 21 455 5 460 3.83e-42 156
Msa0949590 AT1G30530.1 25.918 463 295 15 16 455 6 443 8.69e-42 154
Msa0949590 AT3G16520.3 31.054 351 200 11 125 451 116 448 1.72e-41 154
Msa0949590 AT5G17040.1 26.770 452 288 14 24 455 4 432 2.34e-41 153
Msa0949590 AT5G05880.1 28.964 473 282 16 20 462 3 451 2.56e-41 153
Msa0949590 AT3G55700.1 30.233 473 275 20 17 460 2 448 3.34e-41 153
Msa0949590 AT5G05860.1 29.284 461 281 16 18 455 2 440 4.18e-41 152
Msa0949590 AT5G14860.1 26.987 478 276 18 25 451 8 463 6.80e-41 153
Msa0949590 AT3G22250.1 27.765 443 276 10 27 431 10 446 1.65e-40 151
Msa0949590 AT1G07260.1 27.917 480 286 16 24 459 5 468 1.84e-40 151
Msa0949590 AT3G50740.1 27.101 476 288 15 25 456 7 467 1.90e-40 151
Msa0949590 AT3G16520.2 30.836 347 198 11 125 447 116 444 1.97e-40 150
Msa0949590 AT3G16520.1 30.836 347 198 11 125 447 116 444 2.28e-40 150
Msa0949590 AT1G22370.1 33.214 280 173 6 174 445 14 287 2.38e-40 147
Msa0949590 AT4G15280.2 26.482 506 286 18 13 459 24 502 3.05e-40 151
Msa0949590 AT1G73880.1 27.743 483 286 18 16 459 5 463 3.67e-40 150
Msa0949590 AT2G29710.1 27.215 474 289 16 24 459 4 459 5.03e-40 150
Msa0949590 AT4G15280.1 27.033 492 273 18 27 459 6 470 7.71e-40 150
Msa0949590 AT3G46690.1 28.512 477 274 17 18 459 2 446 1.09e-39 149
Msa0949590 AT3G55710.1 30.063 479 272 21 17 460 2 452 1.11e-39 149
Msa0949590 AT4G36770.1 28.692 474 256 16 25 446 4 447 1.54e-39 148
Msa0949590 AT3G46680.1 28.333 480 275 18 15 459 1 446 5.52e-39 147
Msa0949590 AT5G03490.1 26.471 476 296 14 17 462 11 462 9.47e-39 146
Msa0949590 AT1G07250.1 25.367 477 299 14 27 460 8 470 2.12e-38 145
Msa0949590 AT3G21760.1 25.051 491 291 15 27 459 6 477 4.47e-38 145
Msa0949590 AT3G21790.1 26.572 493 289 17 27 464 6 480 4.71e-38 145
Msa0949590 AT3G21750.1 26.403 481 285 14 27 459 6 465 4.76e-38 144
Msa0949590 AT2G29740.1 26.899 487 291 16 20 459 3 471 5.73e-38 144
Msa0949590 AT1G51210.1 27.174 460 266 17 12 434 2 429 9.57e-38 143
Msa0949590 AT5G17040.2 30.877 285 181 7 174 455 59 330 1.43e-37 140
Msa0949590 AT2G18570.1 27.682 466 249 21 25 434 5 438 9.75e-37 141
Msa0949590 AT2G18560.1 30.380 395 202 16 109 458 6 372 1.69e-36 138
Msa0949590 AT5G05890.1 27.368 475 291 16 20 462 3 455 2.29e-36 139
Msa0949590 AT3G46720.1 28.319 452 280 13 27 459 11 437 2.48e-36 139
Msa0949590 AT1G07240.1 25.257 487 295 15 24 459 4 472 3.39e-36 139
Msa0949590 AT5G12890.1 27.823 496 284 18 18 459 3 478 5.55e-36 139
Msa0949590 AT3G21800.1 24.486 486 294 13 27 459 7 472 7.41e-36 139
Msa0949590 AT5G49690.1 26.964 471 297 17 18 461 3 453 1.28e-35 137
Msa0949590 AT2G26480.1 27.409 467 275 15 27 461 10 444 2.37e-35 137
Msa0949590 AT5G65550.1 28.070 456 267 18 16 434 3 434 5.56e-35 136
Msa0949590 AT2G29750.1 25.963 493 289 18 20 460 3 471 1.11e-34 135
Msa0949590 AT5G17030.1 24.190 463 304 17 19 456 9 449 1.13e-34 135
Msa0949590 AT3G21780.1 26.151 478 290 15 27 459 6 465 1.42e-34 135
Msa0949590 AT2G16890.3 26.667 435 242 17 21 408 5 409 2.01e-34 134
Msa0949590 AT3G46700.1 25.157 477 285 14 18 459 2 441 3.72e-33 130
Msa0949590 AT4G15260.1 28.533 368 207 12 130 459 2 351 2.20e-32 127
Msa0949590 AT1G06000.1 26.737 475 256 19 25 460 10 431 1.49e-30 123
Msa0949590 AT4G27560.1 26.201 458 263 15 25 443 7 428 1.61e-30 123
Msa0949590 AT4G27570.1 26.503 449 273 15 25 443 7 428 1.93e-30 123
Msa0949590 AT5G53990.1 24.945 453 294 15 25 455 6 434 3.98e-30 122
Msa0949590 AT3G29630.1 27.211 441 268 18 25 438 6 420 1.48e-29 120
Msa0949590 AT5G54010.1 24.943 441 281 14 25 438 6 423 1.98e-29 120
Msa0949590 AT1G64910.1 23.904 456 295 13 25 455 6 434 4.09e-29 119
Msa0949590 AT2G22590.1 25.466 483 278 23 25 459 15 463 2.85e-28 117
Msa0949590 AT5G37950.1 31.010 287 152 7 124 384 85 351 2.08e-27 112
Msa0949590 AT5G37950.2 30.961 281 154 6 124 384 85 345 2.19e-27 112
Msa0949590 AT1G64920.1 23.581 458 298 15 25 455 6 438 1.11e-24 106
Msa0949590 AT3G29630.2 25.740 439 251 16 25 438 6 394 1.23e-24 106
Msa0949590 AT2G22930.1 22.658 459 303 13 25 458 6 437 1.07e-23 103
Msa0949590 AT5G54060.1 25.263 475 290 18 27 459 15 466 1.73e-23 103
Msa0949590 AT1G50580.1 25.221 452 295 15 25 455 6 435 3.42e-23 102
Msa0949590 AT4G09500.2 23.341 437 297 11 25 443 6 422 5.50e-23 101
Msa0949590 AT4G01070.2 26.575 365 213 11 15 343 1 346 2.35e-21 95.5
Msa0949590 AT4G09500.1 23.624 436 272 13 25 443 6 397 3.67e-19 89.7
Msa0949590 AT2G23210.1 25.092 271 182 6 24 283 9 269 2.73e-18 85.5
Msa0949590 AT4G34135.2 23.782 349 212 12 15 325 1 333 4.51e-18 85.5

Find 90 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGCTAGATTCTGTATT+TGG 0.136499 6_3:+36336753 None:intergenic
CCTTCTCTCTTGTATAAATA+TGG 0.141140 6_3:-36337516 Msa0949590:CDS
ATCAGTGCCATCTTCGTATT+TGG 0.145724 6_3:-36336823 Msa0949590:CDS
TGCTTTGAAATGGAAGAATT+TGG 0.185185 6_3:-36336250 Msa0949590:CDS
CTTGATGTTGCCAAGAATTT+CGG 0.195476 6_3:-36337682 Msa0949590:CDS
TTGATGTTGCCAAGAATTTC+GGG 0.240389 6_3:-36337681 Msa0949590:CDS
TATTGCTGATGTCTGGAAAA+TGG 0.247061 6_3:-36336379 Msa0949590:CDS
GATGGTCCGATTGTCTTTAA+TGG 0.248537 6_3:+36336843 None:intergenic
GCATCAAAGATGACACAATT+TGG 0.260489 6_3:+36337721 None:intergenic
TGATAACTGTTTATTCATAT+TGG 0.292730 6_3:-36337924 Msa0949590:CDS
GAAATAATTGAGACTGAAAA+AGG 0.300168 6_3:-36336291 Msa0949590:CDS
CTTTGATGCAATTTGTCCTT+GGG 0.305558 6_3:-36337707 Msa0949590:CDS
AAGTTTACATAGAGACCTTC+TGG 0.308507 6_3:-36337804 Msa0949590:CDS
GTGTTAACACATGAAGCTTT+AGG 0.324267 6_3:-36336510 Msa0949590:CDS
ACCAAGTAGCCCGAAATTCT+TGG 0.329971 6_3:+36337672 None:intergenic
TCTGTTGTTTCTAAGTCTTT+AGG 0.332743 6_3:+36335897 None:intergenic
AATGTTCCTTCAAACCCTTT+TGG 0.334764 6_3:+36336573 None:intergenic
TCAGTTGTGTATGTCTCATT+TGG 0.337402 6_3:-36336705 Msa0949590:CDS
TTTCAACCCTTTCCCATGTT+AGG 0.341473 6_3:-36335952 Msa0949590:three_prime_UTR
ATCAAAGATGACAAAGAATA+TGG 0.352890 6_3:-36336792 Msa0949590:CDS
CATTGATTGCAATGCCGCTT+TGG 0.356064 6_3:-36336428 Msa0949590:CDS
CGCTTTGAGAATTGAATCAT+AGG 0.365703 6_3:+36337976 None:intergenic
TCTTTGATGCAATTTGTCCT+TGG 0.377936 6_3:-36337708 Msa0949590:CDS
CAGTTGTGTATGTCTCATTT+GGG 0.398015 6_3:-36336704 Msa0949590:CDS
AACAATTAAGAATTGTATAA+AGG 0.403764 6_3:-36336313 Msa0949590:CDS
CAAAACTTATTGCTGATGTC+TGG 0.409613 6_3:-36336386 Msa0949590:CDS
CAATCTGAGTATTTGTTACC+TGG 0.413505 6_3:-36337567 Msa0949590:CDS
GAACAAGTTAAGCTTCCAAA+AGG 0.420684 6_3:-36336588 Msa0949590:CDS
CTAACATTGGTAAAGCAGAT+TGG 0.427449 6_3:-36337452 Msa0949590:CDS
TCAAAATATTGCAGAATTTG+TGG 0.429889 6_3:-36336193 Msa0949590:CDS
GCCAAGAATTTCGGGCTACT+TGG 0.433657 6_3:-36337673 Msa0949590:CDS
TTTGAAGGAACATTGAAGAA+TGG 0.444219 6_3:-36336564 Msa0949590:CDS
ATATGTCCTTGTGCTGGATA+AGG 0.444665 6_3:+36338003 None:intergenic
AAATCATGACACAAATATCT+TGG 0.444676 6_3:+36335974 None:intergenic
AAGCTTCCAAAAGGGTTTGA+AGG 0.445032 6_3:-36336579 Msa0949590:CDS
TGGATTGGTTGGCTAAGATT+TGG 0.446047 6_3:-36336866 Msa0949590:CDS
TTTGATAGAGAAAGGAGTAA+AGG 0.459498 6_3:-36337953 Msa0949590:CDS
ATTGCTGATGTCTGGAAAAT+GGG 0.460995 6_3:-36336378 Msa0949590:CDS
CAAAGCGGCATTGCAATCAA+TGG 0.465377 6_3:+36336429 None:intergenic
ACCCTCATCAACAGAACTCT+TGG 0.466772 6_3:+36336227 None:intergenic
TCAAAGCGTTTGATAGAGAA+AGG 0.470113 6_3:-36337961 Msa0949590:CDS
GGCTGAATGAGAAACCAAAA+AGG 0.471817 6_3:-36336728 Msa0949590:CDS
TTCACTATCGTTTAATCCCA+AGG 0.473748 6_3:+36336641 None:intergenic
GATTTAGGTGGTGGATTGGT+TGG 0.476522 6_3:-36336877 Msa0949590:intron
GTTTCTAAGTCTTTAGGTAG+TGG 0.478134 6_3:+36335903 None:intergenic
AAATACTCAGATTGTGAAAG+TGG 0.478790 6_3:+36337576 None:intergenic
ATAGAGACCTTCTGGAGAGT+TGG 0.483601 6_3:-36337796 Msa0949590:CDS
GCAAATAGAAGAACTAGCCT+TGG 0.487273 6_3:-36336658 Msa0949590:CDS
ATACAGAATCTAGCATCAAA+TGG 0.488892 6_3:-36336749 Msa0949590:CDS
ATTTGGCCATTAAAGACAAT+CGG 0.490173 6_3:-36336849 Msa0949590:CDS
GAGAGATAGAGAGATGGAAA+AGG 0.497705 6_3:-36338061 Msa0949590:CDS
ACTCAAGATCTTACCTAACA+TGG 0.504016 6_3:+36335939 None:intergenic
GGATTCATATGTCCTTGTGC+TGG 0.513849 6_3:+36337997 None:intergenic
CAAAGATGACACAATTTGGT+GGG 0.515086 6_3:+36337725 None:intergenic
ATCTTACCTAACATGGGAAA+GGG 0.521923 6_3:+36335946 None:intergenic
CAAATAGAAGAACTAGCCTT+GGG 0.522674 6_3:-36336657 Msa0949590:CDS
ATTTGATTTAGGTGGTGGAT+TGG 0.525361 6_3:-36336881 Msa0949590:intron
ACGTTGGAAGCTTTGAGTAT+CGG 0.529346 6_3:-36336456 Msa0949590:CDS
GCCAAGAGTTCTGTTGATGA+GGG 0.540288 6_3:-36336228 Msa0949590:CDS
ATTTCAGATGGCTATGACGA+TGG 0.545355 6_3:-36337853 Msa0949590:CDS
AACAAGTTAAGCTTCCAAAA+GGG 0.548514 6_3:-36336587 Msa0949590:CDS
TGTGTTAACACTTCTAATTG+TGG 0.551691 6_3:+36336522 None:intergenic
ACAACTACGTCAAACACGAT+TGG 0.552524 6_3:+36337486 None:intergenic
GATCTTACCTAACATGGGAA+AGG 0.555388 6_3:+36335945 None:intergenic
TGACGATGGAGGGTATGAAT+CGG 0.556135 6_3:-36337839 Msa0949590:CDS
ATTGTCTAAACTTGCTCAAG+GGG 0.566260 6_3:-36337544 Msa0949590:CDS
TGACACAAATATCTTGGCAC+TGG 0.571289 6_3:+36335980 None:intergenic
GGATTGTCTAAACTTGCTCA+AGG 0.572555 6_3:-36337546 Msa0949590:CDS
GGCCAAGAGTTCTGTTGATG+AGG 0.573451 6_3:-36336229 Msa0949590:CDS
AGAAGAGAGAGATAGAGAGA+TGG 0.574898 6_3:-36338067 Msa0949590:CDS
TGAGCAAGTTTAGACAATCC+AGG 0.574900 6_3:+36337549 None:intergenic
AAATACGAAGATGGCACTGA+TGG 0.577313 6_3:+36336825 None:intergenic
GATTGTCTAAACTTGCTCAA+GGG 0.585259 6_3:-36337545 Msa0949590:CDS
TCAAAGATGACACAATTTGG+TGG 0.589420 6_3:+36337724 None:intergenic
CTCAAGATCTTACCTAACAT+GGG 0.591340 6_3:+36335940 None:intergenic
AAGAGTTCTGTTGATGAGGG+TGG 0.601787 6_3:-36336225 Msa0949590:CDS
ATAGAGAGATGGAAAAGGAG+AGG 0.611519 6_3:-36338056 Msa0949590:CDS
CAGATGGCTATGACGATGGA+GGG 0.615649 6_3:-36337849 Msa0949590:CDS
TCAGATGGCTATGACGATGG+AGG 0.621440 6_3:-36337850 Msa0949590:CDS
TTGTGATCCAACTCTCCAGA+AGG 0.623417 6_3:+36337789 None:intergenic
CCATATTTATACAAGAGAGA+AGG 0.626966 6_3:+36337516 None:intergenic
AGATCAGACAGTGAGCTACA+TGG 0.629800 6_3:+36338028 None:intergenic
TTGATATAATAAGTATAATG+TGG 0.635364 6_3:-36336030 Msa0949590:three_prime_UTR
TACGTCAAACACGATTGGAT+AGG 0.637459 6_3:+36337491 None:intergenic
GAAGTTGAGAGCATTTCAGA+TGG 0.645106 6_3:-36337865 Msa0949590:intron
TTGGCAACATCAAGAACCCA+AGG 0.647066 6_3:+36337691 None:intergenic
TTGTGGTTGGAACTCGACGT+TGG 0.656712 6_3:-36336472 Msa0949590:CDS
ATCTTACCTTATCCAGCACA+AGG 0.662209 6_3:-36338009 Msa0949590:CDS
GTAACTTGATCGATCCAAAG+CGG 0.697726 6_3:+36336414 None:intergenic
AGAATGGTTTAATAGTGACA+TGG 0.726222 6_3:-36336548 Msa0949590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTAAATTAATTTGATTT+AGG - chr6_3:36338483-36338502 Msa0949590:intron 10.0%
!! AAACTTATCAAAAAAACTTT+GGG + chr6_3:36335894-36335913 None:intergenic 15.0%
!! GCCAATTTATAAATTTAAAA+CGG - chr6_3:36336255-36336274 Msa0949590:CDS 15.0%
!!! CCAATTTATAAATTTAAAAC+GGG - chr6_3:36336256-36336275 Msa0949590:CDS 15.0%
!! ATATTTGTGTTTATATTATG+TGG - chr6_3:36336363-36336382 Msa0949590:CDS 15.0%
!! TTCTTATATTAAATTTGACA+TGG - chr6_3:36336396-36336415 Msa0949590:CDS 15.0%
!! AAAACATTTATTTATAAGTG+GGG + chr6_3:36336753-36336772 None:intergenic 15.0%
!! CAAAACATTTATTTATAAGT+GGG + chr6_3:36336754-36336773 None:intergenic 15.0%
!!! CACTTATAAATAAATGTTTT+GGG - chr6_3:36336753-36336772 Msa0949590:CDS 15.0%
!!! ACTTATAAATAAATGTTTTG+GGG - chr6_3:36336754-36336773 Msa0949590:CDS 15.0%
!!! TTTTTCAAGTAATATTACAT+AGG + chr6_3:36336825-36336844 None:intergenic 15.0%
!! ATACTTATGAAAAGTAATAT+AGG + chr6_3:36338355-36338374 None:intergenic 15.0%
!!! TTAAATTAATTTGATTTAGG+TGG - chr6_3:36338486-36338505 Msa0949590:intron 15.0%
!! ATAGTGAAAAATATTTCTTA+TGG - chr6_3:36338749-36338768 Msa0949590:intron 15.0%
!! TAGTGAAAAATATTTCTTAT+GGG - chr6_3:36338750-36338769 Msa0949590:intron 15.0%
!! AACAATTAAGAATTGTATAA+AGG - chr6_3:36339062-36339081 Msa0949590:intron 15.0%
!!! TTCTTTTTCTTTCTTTTATA+TGG - chr6_3:36339290-36339309 Msa0949590:intron 15.0%
!! TTGATATAATAAGTATAATG+TGG - chr6_3:36339345-36339364 Msa0949590:intron 15.0%
!! GAAACTTATCAAAAAAACTT+TGG + chr6_3:36335895-36335914 None:intergenic 20.0%
!!! TTTTAGTGTTTGTTTTATTG+AGG - chr6_3:36336232-36336251 Msa0949590:CDS 20.0%
!!! TTTAGTGTTTGTTTTATTGA+GGG - chr6_3:36336233-36336252 Msa0949590:CDS 20.0%
!!! CCCGTTTTAAATTTATAAAT+TGG + chr6_3:36336259-36336278 None:intergenic 20.0%
!! CCAAAACATTTATTTATAAG+TGG + chr6_3:36336755-36336774 None:intergenic 20.0%
!!! CCACTTATAAATAAATGTTT+TGG - chr6_3:36336752-36336771 Msa0949590:CDS 20.0%
!! ATATTACATAGGTAAAATTG+AGG + chr6_3:36336814-36336833 None:intergenic 20.0%
!!! TTTTGTTAGGTAAAAAATAG+CGG + chr6_3:36337196-36337215 None:intergenic 20.0%
!! TGATAACTGTTTATTCATAT+TGG - chr6_3:36337451-36337470 Msa0949590:CDS 20.0%
!!! TAATACTATATTTCTGTTAG+TGG + chr6_3:36338150-36338169 None:intergenic 20.0%
!! ATAAAAATAGAAGACTATCA+AGG + chr6_3:36338449-36338468 None:intergenic 20.0%
!!! TAAAGAAAAATGCTTTGAAA+TGG - chr6_3:36339115-36339134 Msa0949590:intron 20.0%
! TTTGTGTTTATATTATGTGG+TGG - chr6_3:36336366-36336385 Msa0949590:CDS 25.0%
! TAGAAAATTGTAGTACAATG+AGG - chr6_3:36336499-36336518 Msa0949590:CDS 25.0%
! TAACTTATAAGTAACCATCT+TGG - chr6_3:36336960-36336979 Msa0949590:intron 25.0%
! AACTTATAAGTAACCATCTT+GGG - chr6_3:36336961-36336980 Msa0949590:intron 25.0%
!! GTACATAGATGTATTTTGTT+AGG - chr6_3:36337273-36337292 Msa0949590:intron 25.0%
! AACAAGATTGAGTGAAAAAA+AGG + chr6_3:36337732-36337751 None:intergenic 25.0%
!! GTGAATCAATTTTCTAACAT+TGG - chr6_3:36337910-36337929 Msa0949590:CDS 25.0%
!! ATTTTATGAACTTGAACAAG+AGG - chr6_3:36337960-36337979 Msa0949590:CDS 25.0%
!!! TCTAGTTTTGCTTATCTAAT+GGG - chr6_3:36338032-36338051 Msa0949590:CDS 25.0%
! GTATCAACACTCTATAAAAT+TGG - chr6_3:36338371-36338390 Msa0949590:intron 25.0%
! AACACTCTATAAAATTGGTT+TGG - chr6_3:36338376-36338395 Msa0949590:intron 25.0%
!! AATTAATTTGATTTAGGTGG+TGG - chr6_3:36338489-36338508 Msa0949590:intron 25.0%
! ATCAAAGATGACAAAGAATA+TGG - chr6_3:36338583-36338602 Msa0949590:intron 25.0%
! GAAATAATTGAGACTGAAAA+AGG - chr6_3:36339084-36339103 Msa0949590:intron 25.0%
! TCAAAATATTGCAGAATTTG+TGG - chr6_3:36339182-36339201 Msa0949590:intron 25.0%
!!! ATAATGTGGTCATTTTCATT+TGG - chr6_3:36339359-36339378 Msa0949590:intron 25.0%
! AAATCATGACACAAATATCT+TGG + chr6_3:36339404-36339423 None:intergenic 25.0%
! CTCATTCAGAATTTTTGCAA+TGG - chr6_3:36336013-36336032 Msa0949590:three_prime_UTR 30.0%
TATCACAATTAGAGTCATCA+TGG + chr6_3:36336304-36336323 None:intergenic 30.0%
AAAAAACTCAAGTCTCACAT+CGG + chr6_3:36336585-36336604 None:intergenic 30.0%
!! GTCTTGTTTGGTAAAATTAG+TGG + chr6_3:36336908-36336927 None:intergenic 30.0%
CCAAACAAGACAAATTCAAT+CGG - chr6_3:36336917-36336936 Msa0949590:intron 30.0%
CTAACTTATAAGTCATTCGT+GGG - chr6_3:36337098-36337117 Msa0949590:intron 30.0%
ACAAAACAAACAATTGTGCT+TGG + chr6_3:36337228-36337247 None:intergenic 30.0%
TTTGATAGAGAAAGGAGTAA+AGG - chr6_3:36337422-36337441 Msa0949590:CDS 30.0%
AAATACTCAGATTGTGAAAG+TGG + chr6_3:36337802-36337821 None:intergenic 30.0%
CCATATTTATACAAGAGAGA+AGG + chr6_3:36337862-36337881 None:intergenic 30.0%
CCTTCTCTCTTGTATAAATA+TGG - chr6_3:36337859-36337878 Msa0949590:CDS 30.0%
CGAAGTATAGAATGACATTT+CGG + chr6_3:36338007-36338026 None:intergenic 30.0%
!!! GTCTAGTTTTGCTTATCTAA+TGG - chr6_3:36338031-36338050 Msa0949590:CDS 30.0%
! TATCTAATGGGATGTGATTT+TGG - chr6_3:36338044-36338063 Msa0949590:CDS 30.0%
CGATAAGATCTTAAATGTTG+CGG - chr6_3:36338082-36338101 Msa0949590:CDS 30.0%
AACCACTAACAAACTTCTAA+GGG + chr6_3:36338202-36338221 None:intergenic 30.0%
ATTTGGCCATTAAAGACAAT+CGG - chr6_3:36338526-36338545 Msa0949590:intron 30.0%
! CTTTTATCCAAATACGAAGA+TGG + chr6_3:36338562-36338581 None:intergenic 30.0%
TTGATGCTAGATTCTGTATT+TGG + chr6_3:36338625-36338644 None:intergenic 30.0%
ATACAGAATCTAGCATCAAA+TGG - chr6_3:36338626-36338645 Msa0949590:intron 30.0%
AACAAGTTAAGCTTCCAAAA+GGG - chr6_3:36338788-36338807 Msa0949590:intron 30.0%
TTTGAAGGAACATTGAAGAA+TGG - chr6_3:36338811-36338830 Msa0949590:intron 30.0%
AGAATGGTTTAATAGTGACA+TGG - chr6_3:36338827-36338846 Msa0949590:intron 30.0%
TGTGTTAACACTTCTAATTG+TGG + chr6_3:36338856-36338875 None:intergenic 30.0%
!! TGCTTTGAAATGGAAGAATT+TGG - chr6_3:36339125-36339144 Msa0949590:intron 30.0%
!! TCTGTTGTTTCTAAGTCTTT+AGG + chr6_3:36339481-36339500 None:intergenic 30.0%
! GAATTTTTGCAATGGTCTAG+CGG - chr6_3:36336021-36336040 Msa0949590:three_prime_UTR 35.0%
TTCTGCTTAAGAATTTCAGC+AGG - chr6_3:36336432-36336451 Msa0949590:CDS 35.0%
TCTGCTTAAGAATTTCAGCA+GGG - chr6_3:36336433-36336452 Msa0949590:CDS 35.0%
TTAGAGCTTGTCGAATTCAA+GGG + chr6_3:36336658-36336677 None:intergenic 35.0%
ATTAGAGCTTGTCGAATTCA+AGG + chr6_3:36336659-36336678 None:intergenic 35.0%
TCACGATTTCTATTCCAAGA+TGG + chr6_3:36336683-36336702 None:intergenic 35.0%
CTTGGAATAGAAATCGTGAT+TGG - chr6_3:36336684-36336703 Msa0949590:CDS 35.0%
! CCGATTGAATTTGTCTTGTT+TGG + chr6_3:36336920-36336939 None:intergenic 35.0%
TATAAGTAACCATCTTGGGT+TGG - chr6_3:36336965-36336984 Msa0949590:intron 35.0%
GCTAACTTATAAGTCATTCG+TGG - chr6_3:36337097-36337116 Msa0949590:intron 35.0%
!!! TTGGACATAGTGGTTTTGTT+AGG + chr6_3:36337209-36337228 None:intergenic 35.0%
!! CGCTTTGAGAATTGAATCAT+AGG + chr6_3:36337402-36337421 None:intergenic 35.0%
! TCAAAGCGTTTGATAGAGAA+AGG - chr6_3:36337414-36337433 Msa0949590:intron 35.0%
AAGTTTACATAGAGACCTTC+TGG - chr6_3:36337571-36337590 Msa0949590:CDS 35.0%
CAAAGATGACACAATTTGGT+GGG + chr6_3:36337653-36337672 None:intergenic 35.0%
TCAAAGATGACACAATTTGG+TGG + chr6_3:36337654-36337673 None:intergenic 35.0%
GCATCAAAGATGACACAATT+TGG + chr6_3:36337657-36337676 None:intergenic 35.0%
TCTTTGATGCAATTTGTCCT+TGG - chr6_3:36337667-36337686 Msa0949590:CDS 35.0%
CTTTGATGCAATTTGTCCTT+GGG - chr6_3:36337668-36337687 Msa0949590:CDS 35.0%
CTTGATGTTGCCAAGAATTT+CGG - chr6_3:36337693-36337712 Msa0949590:CDS 35.0%
TTGATGTTGCCAAGAATTTC+GGG - chr6_3:36337694-36337713 Msa0949590:CDS 35.0%
! CAATCTGAGTATTTGTTACC+TGG - chr6_3:36337808-36337827 Msa0949590:CDS 35.0%
! GATTGTCTAAACTTGCTCAA+GGG - chr6_3:36337830-36337849 Msa0949590:CDS 35.0%
! ATTGTCTAAACTTGCTCAAG+GGG - chr6_3:36337831-36337850 Msa0949590:CDS 35.0%
CTAACATTGGTAAAGCAGAT+TGG - chr6_3:36337923-36337942 Msa0949590:CDS 35.0%
CTTCAAATTTAATCGCACAG+CGG - chr6_3:36338124-36338143 Msa0949590:intron 35.0%
CAACCACTAACAAACTTCTA+AGG + chr6_3:36338203-36338222 None:intergenic 35.0%
AATTTCAAACCATGTTGTCC+TGG + chr6_3:36338297-36338316 None:intergenic 35.0%
TGCGGTGGTTAAAAATCAAA+GGG + chr6_3:36338412-36338431 None:intergenic 35.0%
!! ATTTGATTTAGGTGGTGGAT+TGG - chr6_3:36338494-36338513 Msa0949590:intron 35.0%
! ACATACACAACTGACCTTTT+TGG + chr6_3:36338664-36338683 None:intergenic 35.0%
TCAGTTGTGTATGTCTCATT+TGG - chr6_3:36338670-36338689 Msa0949590:intron 35.0%
CAGTTGTGTATGTCTCATTT+GGG - chr6_3:36338671-36338690 Msa0949590:intron 35.0%
!! CAAATAGAAGAACTAGCCTT+GGG - chr6_3:36338718-36338737 Msa0949590:intron 35.0%
TTCACTATCGTTTAATCCCA+AGG + chr6_3:36338737-36338756 None:intergenic 35.0%
GAACAAGTTAAGCTTCCAAA+AGG - chr6_3:36338787-36338806 Msa0949590:intron 35.0%
! AATGTTCCTTCAAACCCTTT+TGG + chr6_3:36338805-36338824 None:intergenic 35.0%
GTGTTAACACATGAAGCTTT+AGG - chr6_3:36338865-36338884 Msa0949590:intron 35.0%
CAAAACTTATTGCTGATGTC+TGG - chr6_3:36338989-36339008 Msa0949590:intron 35.0%
TATTGCTGATGTCTGGAAAA+TGG - chr6_3:36338996-36339015 Msa0949590:intron 35.0%
ATTGCTGATGTCTGGAAAAT+GGG - chr6_3:36338997-36339016 Msa0949590:intron 35.0%
!! TGTGGTCATTTTCATTTGGT+AGG - chr6_3:36339363-36339382 Msa0949590:intron 35.0%
ATCTTACCTAACATGGGAAA+GGG + chr6_3:36339432-36339451 None:intergenic 35.0%
CTCAAGATCTTACCTAACAT+GGG + chr6_3:36339438-36339457 None:intergenic 35.0%
ACTCAAGATCTTACCTAACA+TGG + chr6_3:36339439-36339458 None:intergenic 35.0%
GTTTCTAAGTCTTTAGGTAG+TGG + chr6_3:36339475-36339494 None:intergenic 35.0%
AAGTCAGCAGCTTCAAACAT+AGG - chr6_3:36335929-36335948 Msa0949590:three_prime_UTR 40.0%
AGTCAGCAGCTTCAAACATA+GGG - chr6_3:36335930-36335949 Msa0949590:three_prime_UTR 40.0%
GATTAGTGTTTGTATGTGCC+TGG - chr6_3:36336048-36336067 Msa0949590:three_prime_UTR 40.0%
! AATAGACCCAGCACTCATTT+TGG - chr6_3:36336607-36336626 Msa0949590:CDS 40.0%
! ATAGACCCAGCACTCATTTT+GGG - chr6_3:36336608-36336627 Msa0949590:CDS 40.0%
! GACAAGCTCTAATACCATCT+TGG - chr6_3:36336666-36336685 Msa0949590:CDS 40.0%
TACAACCACACAAAACTGAC+TGG - chr6_3:36336713-36336732 Msa0949590:CDS 40.0%
AGTTCCACAGCAGACAAATA+TGG + chr6_3:36336780-36336799 None:intergenic 40.0%
!! GTGGTATTGACTTGAGATCT+GGG - chr6_3:36336992-36337011 Msa0949590:intron 40.0%
ATTCTCTCCGATGCCAATTT+GGG - chr6_3:36337045-36337064 Msa0949590:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr6_3:36337061-36337080 None:intergenic 40.0%
ACTTATAAGTCATTCGTGGG+TGG - chr6_3:36337101-36337120 Msa0949590:intron 40.0%
CTTATAAGTCATTCGTGGGT+GGG - chr6_3:36337102-36337121 Msa0949590:intron 40.0%
ACAATTGTGCTTGGACATAG+TGG + chr6_3:36337219-36337238 None:intergenic 40.0%
AGAAGAGAGAGATAGAGAGA+TGG - chr6_3:36337308-36337327 Msa0949590:intron 40.0%
GAGAGATAGAGAGATGGAAA+AGG - chr6_3:36337314-36337333 Msa0949590:intron 40.0%
ATAGAGAGATGGAAAAGGAG+AGG - chr6_3:36337319-36337338 Msa0949590:intron 40.0%
ATCTTACCTTATCCAGCACA+AGG - chr6_3:36337366-36337385 Msa0949590:intron 40.0%
ATATGTCCTTGTGCTGGATA+AGG + chr6_3:36337375-36337394 None:intergenic 40.0%
!! GAAGTTGAGAGCATTTCAGA+TGG - chr6_3:36337510-36337529 Msa0949590:CDS 40.0%
ATTTCAGATGGCTATGACGA+TGG - chr6_3:36337522-36337541 Msa0949590:CDS 40.0%
TGAGCAAGTTTAGACAATCC+AGG + chr6_3:36337829-36337848 None:intergenic 40.0%
! GGATTGTCTAAACTTGCTCA+AGG - chr6_3:36337829-36337848 Msa0949590:CDS 40.0%
TACGTCAAACACGATTGGAT+AGG + chr6_3:36337887-36337906 None:intergenic 40.0%
ACAACTACGTCAAACACGAT+TGG + chr6_3:36337892-36337911 None:intergenic 40.0%
!! AATGGGATGTGATTTTGGCA+AGG - chr6_3:36338049-36338068 Msa0949590:CDS 40.0%
!! CTCCCTTAGAAGTTTGTTAG+TGG - chr6_3:36338197-36338216 Msa0949590:intron 40.0%
CTGCATATCGATATGTATCC+AGG - chr6_3:36338276-36338295 Msa0949590:intron 40.0%
GATATGTATCCAGGACAACA+TGG - chr6_3:36338285-36338304 Msa0949590:intron 40.0%
CTGCGGTGGTTAAAAATCAA+AGG + chr6_3:36338413-36338432 None:intergenic 40.0%
! TGATTTTTAACCACCGCAGA+CGG - chr6_3:36338414-36338433 Msa0949590:intron 40.0%
!! TGGATTGGTTGGCTAAGATT+TGG - chr6_3:36338509-36338528 Msa0949590:intron 40.0%
GATGGTCCGATTGTCTTTAA+TGG + chr6_3:36338535-36338554 None:intergenic 40.0%
! AAATACGAAGATGGCACTGA+TGG + chr6_3:36338553-36338572 None:intergenic 40.0%
ATCAGTGCCATCTTCGTATT+TGG - chr6_3:36338552-36338571 Msa0949590:intron 40.0%
GGCTGAATGAGAAACCAAAA+AGG - chr6_3:36338647-36338666 Msa0949590:intron 40.0%
! GCAAATAGAAGAACTAGCCT+TGG - chr6_3:36338717-36338736 Msa0949590:intron 40.0%
AAGCTTCCAAAAGGGTTTGA+AGG - chr6_3:36338796-36338815 Msa0949590:intron 40.0%
!! GGTTGTTTTGTGACACATTG+TGG - chr6_3:36338886-36338905 Msa0949590:intron 40.0%
! GTTTTGTGACACATTGTGGT+TGG - chr6_3:36338890-36338909 Msa0949590:intron 40.0%
!! ACGTTGGAAGCTTTGAGTAT+CGG - chr6_3:36338919-36338938 Msa0949590:intron 40.0%
GTAACTTGATCGATCCAAAG+CGG + chr6_3:36338964-36338983 None:intergenic 40.0%
TGACACAAATATCTTGGCAC+TGG + chr6_3:36339398-36339417 None:intergenic 40.0%
TTTCAACCCTTTCCCATGTT+AGG - chr6_3:36339423-36339442 Msa0949590:intron 40.0%
GATCTTACCTAACATGGGAA+AGG + chr6_3:36339433-36339452 None:intergenic 40.0%
ACAGAAACTCAGCAACAGCA+AGG - chr6_3:36335982-36336001 Msa0949590:three_prime_UTR 45.0%
! GCCCTTCGACTTGTTTAAGA+CGG - chr6_3:36336278-36336297 Msa0949590:CDS 45.0%
GCCGTCTTAAACAAGTCGAA+GGG + chr6_3:36336282-36336301 None:intergenic 45.0%
GATCTCAAGTCAATACCACC+AGG + chr6_3:36336991-36337010 None:intergenic 45.0%
!! GGTGGTATTGACTTGAGATC+TGG - chr6_3:36336991-36337010 Msa0949590:intron 45.0%
GAATCGAACCTGAGATCTTG+AGG + chr6_3:36337029-36337048 None:intergenic 45.0%
GATTCTCTCCGATGCCAATT+TGG - chr6_3:36337044-36337063 Msa0949590:intron 45.0%
AGATCAGACAGTGAGCTACA+TGG + chr6_3:36337350-36337369 None:intergenic 45.0%
GGATTCATATGTCCTTGTGC+TGG + chr6_3:36337381-36337400 None:intergenic 45.0%
! TGACGATGGAGGGTATGAAT+CGG - chr6_3:36337536-36337555 Msa0949590:CDS 45.0%
! ATAGAGACCTTCTGGAGAGT+TGG - chr6_3:36337579-36337598 Msa0949590:CDS 45.0%
TTGTGATCCAACTCTCCAGA+AGG + chr6_3:36337589-36337608 None:intergenic 45.0%
TTGGCAACATCAAGAACCCA+AGG + chr6_3:36337687-36337706 None:intergenic 45.0%
ACCAAGTAGCCCGAAATTCT+TGG + chr6_3:36337706-36337725 None:intergenic 45.0%
! TAGCCACTGACTATGAAGCA+CGG - chr6_3:36338245-36338264 Msa0949590:intron 45.0%
AGTATCCGTGCTTCACAGAT+AGG - chr6_3:36338320-36338339 Msa0949590:intron 45.0%
TCAAGCCTATCTGTGAAGCA+CGG + chr6_3:36338328-36338347 None:intergenic 45.0%
! GATTTTTAACCACCGCAGAC+GGG - chr6_3:36338415-36338434 Msa0949590:intron 45.0%
AAGGACTTAAAACCCGTCTG+CGG + chr6_3:36338430-36338449 None:intergenic 45.0%
!! GATTTAGGTGGTGGATTGGT+TGG - chr6_3:36338498-36338517 Msa0949590:intron 45.0%
CAAAGCGGCATTGCAATCAA+TGG + chr6_3:36338949-36338968 None:intergenic 45.0%
! CATTGATTGCAATGCCGCTT+TGG - chr6_3:36338947-36338966 Msa0949590:intron 45.0%
! GCCAAGAGTTCTGTTGATGA+GGG - chr6_3:36339147-36339166 Msa0949590:intron 45.0%
ACCCTCATCAACAGAACTCT+TGG + chr6_3:36339151-36339170 None:intergenic 45.0%
! AAGAGTTCTGTTGATGAGGG+TGG - chr6_3:36339150-36339169 Msa0949590:intron 45.0%
TTTGCAATGGTCTAGCGGTC+TGG - chr6_3:36336026-36336045 Msa0949590:three_prime_UTR 50.0%
TGTTTGTATGTGCCTGGTCC+TGG - chr6_3:36336054-36336073 Msa0949590:three_prime_UTR 50.0%
GTTTGTATGTGCCTGGTCCT+GGG - chr6_3:36336055-36336074 Msa0949590:three_prime_UTR 50.0%
GGCCGTCTTAAACAAGTCGA+AGG + chr6_3:36336283-36336302 None:intergenic 50.0%
CCAAGCCCAAAATGAGTGCT+GGG + chr6_3:36336616-36336635 None:intergenic 50.0%
ACCAAGCCCAAAATGAGTGC+TGG + chr6_3:36336617-36336636 None:intergenic 50.0%
!! CCTCACCAGTCAGTTTTGTG+TGG + chr6_3:36336721-36336740 None:intergenic 50.0%
CCACACAAAACTGACTGGTG+AGG - chr6_3:36336718-36336737 Msa0949590:CDS 50.0%
TCGAACCTGAGATCTTGAGG+AGG + chr6_3:36337026-36337045 None:intergenic 50.0%
TCTCCGATGCCAATTTGGGT+GGG - chr6_3:36337049-36337068 Msa0949590:intron 50.0%
TAGCCCACCCAAATTGGCAT+CGG + chr6_3:36337055-36337074 None:intergenic 50.0%
TCAGATGGCTATGACGATGG+AGG - chr6_3:36337525-36337544 Msa0949590:CDS 50.0%
CAGATGGCTATGACGATGGA+GGG - chr6_3:36337526-36337545 Msa0949590:CDS 50.0%
GCCAAGAATTTCGGGCTACT+TGG - chr6_3:36337702-36337721 Msa0949590:CDS 50.0%
TGTCCGTGCTTCATAGTCAG+TGG + chr6_3:36338251-36338270 None:intergenic 50.0%
TTGTGGTTGGAACTCGACGT+TGG - chr6_3:36338903-36338922 Msa0949590:intron 50.0%
GGCCAAGAGTTCTGTTGATG+AGG - chr6_3:36339146-36339165 Msa0949590:intron 50.0%
! CCCAGCACTCATTTTGGGCT+TGG - chr6_3:36336613-36336632 Msa0949590:CDS 55.0%
!!! CTCATTTTGGGCTTGGTGCG+TGG - chr6_3:36336620-36336639 Msa0949590:CDS 55.0%
!! TTTGGGCTTGGTGCGTGGAT+AGG - chr6_3:36336625-36336644 Msa0949590:CDS 55.0%
GGGGCCATATTTGTCTGCTG+TGG - chr6_3:36336773-36336792 Msa0949590:CDS 55.0%
!! GTAACCATCTTGGGTTGGCC+TGG - chr6_3:36336970-36336989 Msa0949590:intron 55.0%
GTGCTCCTCCTCAAGATCTC+AGG - chr6_3:36337018-36337037 Msa0949590:intron 55.0%
CTCTCCGATGCCAATTTGGG+TGG - chr6_3:36337048-36337067 Msa0949590:intron 55.0%
GCGGAGAATTGCTACTGACG+TGG - chr6_3:36338101-36338120 Msa0949590:intron 55.0%
GACTTAAAACCCGTCTGCGG+TGG + chr6_3:36338427-36338446 None:intergenic 55.0%
TGTGCCTGGTCCTGGGTACA+AGG - chr6_3:36336062-36336081 Msa0949590:three_prime_UTR 60.0%
AGCACCTTGTACCCAGGACC+AGG + chr6_3:36336069-36336088 None:intergenic 60.0%
TGGTCCTGGGTACAAGGTGC+TGG - chr6_3:36336068-36336087 Msa0949590:three_prime_UTR 60.0%
!! TCCTGGGTACAAGGTGCTGG+TGG - chr6_3:36336071-36336090 Msa0949590:three_prime_UTR 60.0%
!! GGCTTGGTGCGTGGATAGGT+AGG - chr6_3:36336629-36336648 Msa0949590:CDS 60.0%
!! ACCATCTTGGGTTGGCCTGG+TGG - chr6_3:36336973-36336992 Msa0949590:intron 60.0%
ACCACCAGGCCAACCCAAGA+TGG + chr6_3:36336977-36336996 None:intergenic 60.0%
GCCACCAGCACCTTGTACCC+AGG + chr6_3:36336075-36336094 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 36335887 36339510 36335887 ID=Msa0949590;Name=Msa0949590
chr6_3 mRNA 36335887 36339510 36335887 ID=Msa0949590-mRNA-1;Parent=Msa0949590;Name=Msa0949590-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.25|0.2|0.8|0.25|0.2|5|286|465
chr6_3 exon 36335887 36336892 36335887 ID=Msa0949590-mRNA-1:exon:9003;Parent=Msa0949590-mRNA-1
chr6_3 exon 36337416 36337635 36337416 ID=Msa0949590-mRNA-1:exon:9002;Parent=Msa0949590-mRNA-1
chr6_3 exon 36337649 36337878 36337649 ID=Msa0949590-mRNA-1:exon:9001;Parent=Msa0949590-mRNA-1
chr6_3 exon 36337885 36338102 36337885 ID=Msa0949590-mRNA-1:exon:9000;Parent=Msa0949590-mRNA-1
chr6_3 exon 36339501 36339510 36339501 ID=Msa0949590-mRNA-1:exon:8999;Parent=Msa0949590-mRNA-1
chr6_3 CDS 36339501 36339510 36339501 ID=Msa0949590-mRNA-1:cds;Parent=Msa0949590-mRNA-1
chr6_3 CDS 36337885 36338102 36337885 ID=Msa0949590-mRNA-1:cds;Parent=Msa0949590-mRNA-1
chr6_3 CDS 36337649 36337878 36337649 ID=Msa0949590-mRNA-1:cds;Parent=Msa0949590-mRNA-1
chr6_3 CDS 36337416 36337635 36337416 ID=Msa0949590-mRNA-1:cds;Parent=Msa0949590-mRNA-1
chr6_3 CDS 36336173 36336892 36336173 ID=Msa0949590-mRNA-1:cds;Parent=Msa0949590-mRNA-1
chr6_3 three_prime_UTR 36335887 36336172 36335887 ID=Msa0949590-mRNA-1:three_prime_utr;Parent=Msa0949590-mRNA-1
Gene Sequence

>Msa0949590

ATGTCCCAAAGAAGAAGAAGAAAAGAAGAGAGAGATAGAGAGATGGAAAAGGAGAGGAAAAACCATGTAGCTCACTGTCTGATCTTACCTTATCCAGCACAAGGACATATGAATCCTATGATTCAATTCTCAAAGCGTTTGATAGAGAAAGGAGTAAAGGTTACACTGATAACTGTTTATTCATATTGGAAGACTATCAAAAACAAAAATCTTTCTTCAAATATCGAAAGCATTTCAGATGGCTATGACGATGGAGGGTATGAATCGGCAAAGAGCTCTGAAGTTTACATAGAGACCTTCTGGAGAGTTGGATCACAAACACTTTCTACGCTTCTTCATAAGCTTTCGAGCTCAAAAAACCCACCAAATTGTGTCATCTTTGATGCAATTTGTCCTTGGGTTCTTGATGTTGCCAAGAATTTCGGGCTACTTGGTGTTCCTTTTTTTCACTCAATCTTCATATACTTTCATACTCATCAAAAGTTGATTGAATTGCCACTTTCACAATCTGAGTATTTGTTACCTGGATTGTCTAAACTTGCTCAAGGGGATTTGCCTTCTCTCTTGTATAAATATGGATCCTATCCAATCGTGTTTGACGTAGTTGTGAATCAATTTTCTAACATTGGTAAAGCAGATTGGATTCTTGCAAACACATTTTATGAACTTGAACAAGAGGTGGTGGATTGGTTGGCTAAGATTTGGCCATTAAAGACAATCGGACCATCAGTGCCATCTTCGTATTTGGATAAAAGAATCAAAGATGACAAAGAATATGGTGTTAGTATTTCAGATCCAAATACAGAATCTAGCATCAAATGGCTGAATGAGAAACCAAAAAGGTCAGTTGTGTATGTCTCATTTGGGAGCAATTCTCGTCTTAGTGAAGAGCAAATAGAAGAACTAGCCTTGGGATTAAACGATAGTGAAAAATATTTCTTATGGGTTGTTAGAGAATCTGAACAAGTTAAGCTTCCAAAAGGGTTTGAAGGAACATTGAAGAATGGTTTAATAGTGACATGGTGTCCACAATTAGAAGTGTTAACACATGAAGCTTTAGGTTGTTTTGTGACACATTGTGGTTGGAACTCGACGTTGGAAGCTTTGAGTATCGGTGTTCCATTGATTGCAATGCCGCTTTGGATCGATCAAGTTACAAATGCAAAACTTATTGCTGATGTCTGGAAAATGGGTGTTAGAGCTGTTGCTGATGAGAAAGAGATTGTTAGAAGTGAAACAATTAAGAATTGTATAAAGGAAATAATTGAGACTGAAAAAGGAAATGAAATAAAGAAAAATGCTTTGAAATGGAAGAATTTGGCCAAGAGTTCTGTTGATGAGGGTGGAAGATCTGATCAAAATATTGCAGAATTTGTGGCTGCTTTCGCTCAATGTTGA

Protein sequence

>Msa0949590

MSQRRRRKEERDREMEKERKNHVAHCLILPYPAQGHMNPMIQFSKRLIEKGVKVTLITVYSYWKTIKNKNLSSNIESISDGYDDGGYESAKSSEVYIETFWRVGSQTLSTLLHKLSSSKNPPNCVIFDAICPWVLDVAKNFGLLGVPFFHSIFIYFHTHQKLIELPLSQSEYLLPGLSKLAQGDLPSLLYKYGSYPIVFDVVVNQFSNIGKADWILANTFYELEQEVVDWLAKIWPLKTIGPSVPSSYLDKRIKDDKEYGVSISDPNTESSIKWLNEKPKRSVVYVSFGSNSRLSEEQIEELALGLNDSEKYFLWVVRESEQVKLPKGFEGTLKNGLIVTWCPQLEVLTHEALGCFVTHCGWNSTLEALSIGVPLIAMPLWIDQVTNAKLIADVWKMGVRAVADEKEIVRSETIKNCIKEIIETEKGNEIKKNALKWKNLAKSSVDEGGRSDQNIAEFVAAFAQC*