AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0864950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864950 MtrunA17_Chr5g0447981 96.296 162 5 1 1 161 1 162 4.87e-113 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864950 AT2G04790.10 62.069 145 52 2 15 156 36 180 6.53e-65 197
Msa0864950 AT2G04790.15 62.069 145 52 2 15 156 34 178 8.22e-65 196
Msa0864950 AT2G04790.2 62.069 145 52 2 15 156 17 161 1.06e-64 195
Msa0864950 AT2G04790.13 65.152 132 43 2 15 143 36 167 1.10e-61 188
Msa0864950 AT2G04790.14 65.152 132 43 2 15 143 34 165 1.19e-61 188
Msa0864950 AT2G04790.1 65.152 132 43 2 15 143 17 148 1.93e-61 187
Msa0864950 AT2G04790.9 64.935 77 25 1 15 89 36 112 6.21e-32 111
Msa0864950 AT2G04790.12 64.935 77 25 1 15 89 36 112 6.21e-32 111
Msa0864950 AT2G04790.3 64.935 77 25 1 15 89 17 93 1.04e-31 109
Msa0864950 AT2G04790.4 64.935 77 25 1 15 89 17 93 1.04e-31 109
Msa0864950 AT2G04790.5 64.935 77 25 1 15 89 36 112 1.54e-31 110
Msa0864950 AT2G04790.6 64.935 77 25 1 15 89 36 112 1.54e-31 110
Msa0864950 AT2G04790.16 64.935 77 25 1 15 89 17 93 2.30e-31 109
Msa0864950 AT2G04790.8 72.727 44 12 0 15 58 36 79 3.13e-18 75.1
Msa0864950 AT2G04790.11 72.727 44 12 0 15 58 36 79 3.13e-18 75.1
Msa0864950 AT2G04790.7 72.727 44 12 0 15 58 36 79 3.13e-18 75.1

Find 64 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTACTCCCTTAATATT+TGG 0.106470 5_4:+65532352 Msa0864950:CDS
ACAAAGAGTTATTATGTATT+TGG 0.125917 5_4:-65533560 None:intergenic
ATCACTTTCCTCGATTTATT+TGG 0.194419 5_4:-65533472 None:intergenic
GCTGCAAATCCCAAATATTA+AGG 0.224867 5_4:-65532362 None:intergenic
AGAAAATGAGAGATGGAATT+TGG 0.232207 5_4:+65533273 Msa0864950:three_prime_UTR
TGCTTACTCCCTTAATATTT+GGG 0.251158 5_4:+65532353 Msa0864950:CDS
TTATTGTTATGAGGTTATTC+TGG 0.280458 5_4:+65533383 Msa0864950:intron
ATTCTGCATCTGAACTAATA+TGG 0.297613 5_4:-65533733 None:intergenic
TATATATCTTCAGGATCTTT+TGG 0.303960 5_4:-65532591 None:intergenic
ATGTGGCAGCAATGCCTCTA+AGG 0.323320 5_4:+65532295 Msa0864950:CDS
AGTTATTATGTATTTGGAAT+AGG 0.336155 5_4:-65533554 None:intergenic
GTTTCTCAAACAGTTCAATA+TGG 0.354692 5_4:-65533232 None:intergenic
CCTCGATTTATTTGGCTTTG+AGG 0.364586 5_4:-65533464 None:intergenic
TTGGGATTTGCAGCATTTCA+TGG 0.365079 5_4:+65532371 Msa0864950:CDS
TATGACATGTTATTGTTATG+AGG 0.373101 5_4:+65533374 Msa0864950:intron
AATTTCTTCTCTTATATAAG+AGG 0.389578 5_4:-65533703 None:intergenic
GGTCCCTTTGAAGCCCTTAG+AGG 0.394810 5_4:-65532309 None:intergenic
TTAGTTTCTCTTACAAAAGT+AGG 0.398995 5_4:+65532177 Msa0864950:five_prime_UTR
AACACTCCAGTTCCTTGATT+AGG 0.408937 5_4:-65533813 None:intergenic
TAAATCGAGGAAAGTGATCT+TGG 0.409500 5_4:+65533477 Msa0864950:three_prime_UTR
ACATGTCCTAATCAAGGAAC+TGG 0.425053 5_4:+65533807 Msa0864950:three_prime_UTR
CAAACCTTCCTCACCTTCAA+AGG 0.430343 5_4:+65532401 Msa0864950:CDS
TGTAGCAAACACTTAACATA+TGG 0.431558 5_4:+65533596 Msa0864950:three_prime_UTR
CTGCAAATCCCAAATATTAA+GGG 0.434798 5_4:-65532361 None:intergenic
TACATAGTATTTCATCCATA+TGG 0.446699 5_4:+65533778 Msa0864950:three_prime_UTR
ACCAACCAGCATTTGCTTCG+CGG 0.449071 5_4:-65532794 None:intergenic
AATAGGATTGAAACCTTTGA+AGG 0.455552 5_4:-65532414 None:intergenic
AGGACATGTTTATCACCATA+TGG 0.457084 5_4:-65533793 None:intergenic
TCAGATGCAGAATCTAAATC+TGG 0.470856 5_4:+65533743 Msa0864950:three_prime_UTR
AATGCCTCTAAGGGCTTCAA+AGG 0.472734 5_4:+65532305 Msa0864950:CDS
AGTGCCGCATATATATCTTC+AGG 0.473960 5_4:-65532600 None:intergenic
TGAGTGACATAGAAATGAAA+TGG 0.477078 5_4:+65532224 Msa0864950:exon
TGGGAAACAGATTTGAGAAT+CGG 0.477510 5_4:+65532869 Msa0864950:CDS
AGAAGAAGATGCTGTGGAAA+TGG 0.484961 5_4:+65532826 Msa0864950:CDS
TTCTCTTACAAAAGTAGGAA+TGG 0.490600 5_4:+65532182 Msa0864950:five_prime_UTR
CGAAGCAAATGCTGGTTGGT+TGG 0.522860 5_4:+65532797 Msa0864950:CDS
GGTTTGGTCAGACAACTCAT+TGG 0.526406 5_4:+65533096 Msa0864950:intron
TGATAAACATGTCCTAATCA+AGG 0.529038 5_4:+65533801 Msa0864950:three_prime_UTR
GAAACCTTTGAAGGTGAGGA+AGG 0.532186 5_4:-65532405 None:intergenic
AGGCAGAGAGGAAGTGTATG+TGG 0.544412 5_4:+65532278 Msa0864950:CDS
TGAATTACCTCTAGCTACCC+TGG 0.544685 5_4:-65533149 None:intergenic
TTATCTGGTAGAGCTGTGCC+AGG 0.545939 5_4:+65532630 Msa0864950:CDS
TCAAAGACAAGAATGGTAAG+AGG 0.550312 5_4:+65532258 Msa0864950:CDS
GATTGCCGCGAAGCAAATGC+TGG 0.556329 5_4:+65532789 Msa0864950:CDS
ACTTGTATCAAAGACAAGAA+TGG 0.568325 5_4:+65532251 Msa0864950:CDS
TGTGGCAGCAATGCCTCTAA+GGG 0.570128 5_4:+65532296 Msa0864950:CDS
CTCAAAGAGAAAATGAGAGA+TGG 0.572299 5_4:+65533266 Msa0864950:three_prime_UTR
GATTGTCGCGATTATACCAA+TGG 0.578050 5_4:+65532899 Msa0864950:CDS
ATGCCTCTAAGGGCTTCAAA+GGG 0.584284 5_4:+65532306 Msa0864950:CDS
GATTGAAACCTTTGAAGGTG+AGG 0.593749 5_4:-65532409 None:intergenic
GCTGAAACGTTTGAGAAACC+AGG 0.597971 5_4:+65533131 Msa0864950:CDS
GCAGCAGACATAAGCAATTG+TGG 0.599579 5_4:-65532333 None:intergenic
TCTCAGGAGCTGTTCTTGTG+AGG 0.603725 5_4:+65532756 Msa0864950:intron
GAAATCATAGCATGATCTAG+AGG 0.605723 5_4:-65533208 None:intergenic
GAGGAAAGTGATCTTGGACA+TGG 0.610289 5_4:+65533483 Msa0864950:three_prime_UTR
GCCGCGAAGCAAATGCTGGT+TGG 0.618375 5_4:+65532793 Msa0864950:CDS
CTGTTTGAGAAACATGACAT+AGG 0.643006 5_4:+65533242 Msa0864950:three_prime_UTR
AAGAATGGTAAGAGGCAGAG+AGG 0.650232 5_4:+65532266 Msa0864950:CDS
CTGAAACGTTTGAGAAACCA+GGG 0.653890 5_4:+65533132 Msa0864950:CDS
CCTCAAAGCCAAATAAATCG+AGG 0.665555 5_4:+65533464 Msa0864950:three_prime_UTR
TGAGAAACCAGGGTAGCTAG+AGG 0.673317 5_4:+65533142 Msa0864950:CDS
AGATCCTGAAGATATATATG+CGG 0.681441 5_4:+65532596 Msa0864950:CDS
ATATGCAGAAGAAGATGCTG+TGG 0.682714 5_4:+65532820 Msa0864950:CDS
GCAGACATAAGCAATTGTGG+TGG 0.708742 5_4:-65532330 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCGTTAAAAAAAAGTTT+AGG + chr5_4:65532462-65532481 Msa0864950:intron 15.0%
!! ATAAAGAAAGTGAATATTTA+TGG - chr5_4:65532709-65532728 None:intergenic 15.0%
!!! TTTTCGTTAAAAAAAAGTTT+AGG + chr5_4:65532462-65532481 Msa0864950:intron 15.0%
!! ATAAAGAAAGTGAATATTTA+TGG - chr5_4:65532709-65532728 None:intergenic 15.0%
!!! TATTGCTTGTATTTATTTTC+AGG + chr5_4:65532548-65532567 Msa0864950:intron 20.0%
!! AAGTGAATTCAACAAAAAAT+GGG + chr5_4:65532850-65532869 Msa0864950:CDS 20.0%
!! TTTAAACAACTTATTACCAT+TGG - chr5_4:65532918-65532937 None:intergenic 20.0%
!! TGATAATATACAAACACTTA+TGG - chr5_4:65532985-65533004 None:intergenic 20.0%
!!! TTCAATCTGAATTGAATTTT+TGG + chr5_4:65533063-65533082 Msa0864950:intron 20.0%
!!! TGAATTTTTGGTCAATTTAT+AGG + chr5_4:65533075-65533094 Msa0864950:intron 20.0%
!!! AGTTATTATGTATTTGGAAT+AGG - chr5_4:65533557-65533576 None:intergenic 20.0%
!! ACAAAGAGTTATTATGTATT+TGG - chr5_4:65533563-65533582 None:intergenic 20.0%
!! AATTTCTTCTCTTATATAAG+AGG - chr5_4:65533706-65533725 None:intergenic 20.0%
!!! TATTGCTTGTATTTATTTTC+AGG + chr5_4:65532548-65532567 Msa0864950:intron 20.0%
!! AAGTGAATTCAACAAAAAAT+GGG + chr5_4:65532850-65532869 Msa0864950:CDS 20.0%
!! TTTAAACAACTTATTACCAT+TGG - chr5_4:65532918-65532937 None:intergenic 20.0%
!! TGATAATATACAAACACTTA+TGG - chr5_4:65532985-65533004 None:intergenic 20.0%
!!! TTCAATCTGAATTGAATTTT+TGG + chr5_4:65533063-65533082 Msa0864950:intron 20.0%
!!! TGAATTTTTGGTCAATTTAT+AGG + chr5_4:65533075-65533094 Msa0864950:intron 20.0%
!!! AGTTATTATGTATTTGGAAT+AGG - chr5_4:65533557-65533576 None:intergenic 20.0%
!! ACAAAGAGTTATTATGTATT+TGG - chr5_4:65533563-65533582 None:intergenic 20.0%
!! AATTTCTTCTCTTATATAAG+AGG - chr5_4:65533706-65533725 None:intergenic 20.0%
! TTAGTTTCTCTTACAAAAGT+AGG + chr5_4:65532177-65532196 Msa0864950:five_prime_UTR 25.0%
!! TATATATCTTCAGGATCTTT+TGG - chr5_4:65532594-65532613 None:intergenic 25.0%
! GAGAATTATATGAACAGAAT+TGG - chr5_4:65532740-65532759 None:intergenic 25.0%
! ATTCTGTTCATATAATTCTC+AGG + chr5_4:65532740-65532759 Msa0864950:intron 25.0%
! CAAGTGAATTCAACAAAAAA+TGG + chr5_4:65532849-65532868 Msa0864950:CDS 25.0%
! TGCTACATAATTCTTTACAT+AGG - chr5_4:65532961-65532980 None:intergenic 25.0%
!! TTTTGGTCAATTTATAGGTT+TGG + chr5_4:65533080-65533099 Msa0864950:intron 25.0%
!! ACATGTTGACATATAGTTTT+TGG - chr5_4:65533311-65533330 None:intergenic 25.0%
! CAACATGTAATTAACTTACT+AGG + chr5_4:65533323-65533342 Msa0864950:intron 25.0%
! TTACTAGGAGACTAAAATAA+AGG + chr5_4:65533338-65533357 Msa0864950:intron 25.0%
! TATGACATGTTATTGTTATG+AGG + chr5_4:65533374-65533393 Msa0864950:intron 25.0%
! TTATTGTTATGAGGTTATTC+TGG + chr5_4:65533383-65533402 Msa0864950:intron 25.0%
! TACATAGTATTTCATCCATA+TGG + chr5_4:65533778-65533797 Msa0864950:three_prime_UTR 25.0%
! TTAGTTTCTCTTACAAAAGT+AGG + chr5_4:65532177-65532196 Msa0864950:five_prime_UTR 25.0%
!! TATATATCTTCAGGATCTTT+TGG - chr5_4:65532594-65532613 None:intergenic 25.0%
! GAGAATTATATGAACAGAAT+TGG - chr5_4:65532740-65532759 None:intergenic 25.0%
! ATTCTGTTCATATAATTCTC+AGG + chr5_4:65532740-65532759 Msa0864950:intron 25.0%
! CAAGTGAATTCAACAAAAAA+TGG + chr5_4:65532849-65532868 Msa0864950:CDS 25.0%
! TGCTACATAATTCTTTACAT+AGG - chr5_4:65532961-65532980 None:intergenic 25.0%
!! TTTTGGTCAATTTATAGGTT+TGG + chr5_4:65533080-65533099 Msa0864950:intron 25.0%
!! ACATGTTGACATATAGTTTT+TGG - chr5_4:65533311-65533330 None:intergenic 25.0%
! CAACATGTAATTAACTTACT+AGG + chr5_4:65533323-65533342 Msa0864950:intron 25.0%
! TTACTAGGAGACTAAAATAA+AGG + chr5_4:65533338-65533357 Msa0864950:intron 25.0%
! TATGACATGTTATTGTTATG+AGG + chr5_4:65533374-65533393 Msa0864950:intron 25.0%
! TTATTGTTATGAGGTTATTC+TGG + chr5_4:65533383-65533402 Msa0864950:intron 25.0%
! TACATAGTATTTCATCCATA+TGG + chr5_4:65533778-65533797 Msa0864950:three_prime_UTR 25.0%
TTCTCTTACAAAAGTAGGAA+TGG + chr5_4:65532182-65532201 Msa0864950:five_prime_UTR 30.0%
TGAGTGACATAGAAATGAAA+TGG + chr5_4:65532224-65532243 Msa0864950:exon 30.0%
ACTTGTATCAAAGACAAGAA+TGG + chr5_4:65532251-65532270 Msa0864950:CDS 30.0%
TGCTTACTCCCTTAATATTT+GGG + chr5_4:65532353-65532372 Msa0864950:CDS 30.0%
CTGCAAATCCCAAATATTAA+GGG - chr5_4:65532364-65532383 None:intergenic 30.0%
AATAGGATTGAAACCTTTGA+AGG - chr5_4:65532417-65532436 None:intergenic 30.0%
! ATTCCTCTCCTACATTTTAT+CGG + chr5_4:65532438-65532457 Msa0864950:intron 30.0%
ACGAAAAACCGATAAAATGT+AGG - chr5_4:65532449-65532468 None:intergenic 30.0%
AGATCCTGAAGATATATATG+CGG + chr5_4:65532596-65532615 Msa0864950:CDS 30.0%
! TAACTTGTGAACTTTCTGAT+TGG + chr5_4:65532673-65532692 Msa0864950:intron 30.0%
GTTTCTCAAACAGTTCAATA+TGG - chr5_4:65533235-65533254 None:intergenic 30.0%
AGAAAATGAGAGATGGAATT+TGG + chr5_4:65533273-65533292 Msa0864950:three_prime_UTR 30.0%
!!! GTTGACATATAGTTTTTGGT+TGG - chr5_4:65533307-65533326 None:intergenic 30.0%
AGGAGACTAAAATAAAGGAA+TGG + chr5_4:65533343-65533362 Msa0864950:intron 30.0%
ATCACTTTCCTCGATTTATT+TGG - chr5_4:65533475-65533494 None:intergenic 30.0%
TGTAGCAAACACTTAACATA+TGG + chr5_4:65533596-65533615 Msa0864950:three_prime_UTR 30.0%
ATTCTGCATCTGAACTAATA+TGG - chr5_4:65533736-65533755 None:intergenic 30.0%
TGATAAACATGTCCTAATCA+AGG + chr5_4:65533801-65533820 Msa0864950:three_prime_UTR 30.0%
TTCTCTTACAAAAGTAGGAA+TGG + chr5_4:65532182-65532201 Msa0864950:five_prime_UTR 30.0%
TGAGTGACATAGAAATGAAA+TGG + chr5_4:65532224-65532243 Msa0864950:exon 30.0%
ACTTGTATCAAAGACAAGAA+TGG + chr5_4:65532251-65532270 Msa0864950:CDS 30.0%
TGCTTACTCCCTTAATATTT+GGG + chr5_4:65532353-65532372 Msa0864950:CDS 30.0%
CTGCAAATCCCAAATATTAA+GGG - chr5_4:65532364-65532383 None:intergenic 30.0%
AATAGGATTGAAACCTTTGA+AGG - chr5_4:65532417-65532436 None:intergenic 30.0%
! ATTCCTCTCCTACATTTTAT+CGG + chr5_4:65532438-65532457 Msa0864950:intron 30.0%
ACGAAAAACCGATAAAATGT+AGG - chr5_4:65532449-65532468 None:intergenic 30.0%
AGATCCTGAAGATATATATG+CGG + chr5_4:65532596-65532615 Msa0864950:CDS 30.0%
! TAACTTGTGAACTTTCTGAT+TGG + chr5_4:65532673-65532692 Msa0864950:intron 30.0%
GTTTCTCAAACAGTTCAATA+TGG - chr5_4:65533235-65533254 None:intergenic 30.0%
AGAAAATGAGAGATGGAATT+TGG + chr5_4:65533273-65533292 Msa0864950:three_prime_UTR 30.0%
!!! GTTGACATATAGTTTTTGGT+TGG - chr5_4:65533307-65533326 None:intergenic 30.0%
AGGAGACTAAAATAAAGGAA+TGG + chr5_4:65533343-65533362 Msa0864950:intron 30.0%
ATCACTTTCCTCGATTTATT+TGG - chr5_4:65533475-65533494 None:intergenic 30.0%
TGTAGCAAACACTTAACATA+TGG + chr5_4:65533596-65533615 Msa0864950:three_prime_UTR 30.0%
ATTCTGCATCTGAACTAATA+TGG - chr5_4:65533736-65533755 None:intergenic 30.0%
TGATAAACATGTCCTAATCA+AGG + chr5_4:65533801-65533820 Msa0864950:three_prime_UTR 30.0%
TCAAAGACAAGAATGGTAAG+AGG + chr5_4:65532258-65532277 Msa0864950:CDS 35.0%
CTGCTTACTCCCTTAATATT+TGG + chr5_4:65532352-65532371 Msa0864950:CDS 35.0%
GCTGCAAATCCCAAATATTA+AGG - chr5_4:65532365-65532384 None:intergenic 35.0%
AATGTAGGAGAGGAATGAAT+AGG - chr5_4:65532434-65532453 None:intergenic 35.0%
AAACCGATAAAATGTAGGAG+AGG - chr5_4:65532444-65532463 None:intergenic 35.0%
AATTAAGTCCAAATCTGACC+TGG - chr5_4:65532651-65532670 None:intergenic 35.0%
TGGGAAACAGATTTGAGAAT+CGG + chr5_4:65532869-65532888 Msa0864950:CDS 35.0%
GAAATCATAGCATGATCTAG+AGG - chr5_4:65533211-65533230 None:intergenic 35.0%
CTGTTTGAGAAACATGACAT+AGG + chr5_4:65533242-65533261 Msa0864950:three_prime_UTR 35.0%
! CATCTCTCATTTTCTCTTTG+AGG - chr5_4:65533268-65533287 None:intergenic 35.0%
CTCAAAGAGAAAATGAGAGA+TGG + chr5_4:65533266-65533285 Msa0864950:three_prime_UTR 35.0%
TAAATCGAGGAAAGTGATCT+TGG + chr5_4:65533477-65533496 Msa0864950:three_prime_UTR 35.0%
TCAGATGCAGAATCTAAATC+TGG + chr5_4:65533743-65533762 Msa0864950:three_prime_UTR 35.0%
AGGACATGTTTATCACCATA+TGG - chr5_4:65533796-65533815 None:intergenic 35.0%
TCAAAGACAAGAATGGTAAG+AGG + chr5_4:65532258-65532277 Msa0864950:CDS 35.0%
CTGCTTACTCCCTTAATATT+TGG + chr5_4:65532352-65532371 Msa0864950:CDS 35.0%
GCTGCAAATCCCAAATATTA+AGG - chr5_4:65532365-65532384 None:intergenic 35.0%
AATGTAGGAGAGGAATGAAT+AGG - chr5_4:65532434-65532453 None:intergenic 35.0%
AAACCGATAAAATGTAGGAG+AGG - chr5_4:65532444-65532463 None:intergenic 35.0%
AATTAAGTCCAAATCTGACC+TGG - chr5_4:65532651-65532670 None:intergenic 35.0%
TGGGAAACAGATTTGAGAAT+CGG + chr5_4:65532869-65532888 Msa0864950:CDS 35.0%
GAAATCATAGCATGATCTAG+AGG - chr5_4:65533211-65533230 None:intergenic 35.0%
CTGTTTGAGAAACATGACAT+AGG + chr5_4:65533242-65533261 Msa0864950:three_prime_UTR 35.0%
! CATCTCTCATTTTCTCTTTG+AGG - chr5_4:65533268-65533287 None:intergenic 35.0%
CTCAAAGAGAAAATGAGAGA+TGG + chr5_4:65533266-65533285 Msa0864950:three_prime_UTR 35.0%
TAAATCGAGGAAAGTGATCT+TGG + chr5_4:65533477-65533496 Msa0864950:three_prime_UTR 35.0%
TCAGATGCAGAATCTAAATC+TGG + chr5_4:65533743-65533762 Msa0864950:three_prime_UTR 35.0%
AGGACATGTTTATCACCATA+TGG - chr5_4:65533796-65533815 None:intergenic 35.0%
TTGGGATTTGCAGCATTTCA+TGG + chr5_4:65532371-65532390 Msa0864950:CDS 40.0%
! GATTGAAACCTTTGAAGGTG+AGG - chr5_4:65532412-65532431 None:intergenic 40.0%
AGTGCCGCATATATATCTTC+AGG - chr5_4:65532603-65532622 None:intergenic 40.0%
ATATGCAGAAGAAGATGCTG+TGG + chr5_4:65532820-65532839 Msa0864950:CDS 40.0%
AGAAGAAGATGCTGTGGAAA+TGG + chr5_4:65532826-65532845 Msa0864950:CDS 40.0%
GATTGTCGCGATTATACCAA+TGG + chr5_4:65532899-65532918 Msa0864950:CDS 40.0%
CTGAAACGTTTGAGAAACCA+GGG + chr5_4:65533132-65533151 Msa0864950:CDS 40.0%
!! CCTCGATTTATTTGGCTTTG+AGG - chr5_4:65533467-65533486 None:intergenic 40.0%
CCTCAAAGCCAAATAAATCG+AGG + chr5_4:65533464-65533483 Msa0864950:three_prime_UTR 40.0%
ACATGTCCTAATCAAGGAAC+TGG + chr5_4:65533807-65533826 Msa0864950:three_prime_UTR 40.0%
AACACTCCAGTTCCTTGATT+AGG - chr5_4:65533816-65533835 None:intergenic 40.0%
TTGGGATTTGCAGCATTTCA+TGG + chr5_4:65532371-65532390 Msa0864950:CDS 40.0%
! GATTGAAACCTTTGAAGGTG+AGG - chr5_4:65532412-65532431 None:intergenic 40.0%
AGTGCCGCATATATATCTTC+AGG - chr5_4:65532603-65532622 None:intergenic 40.0%
ATATGCAGAAGAAGATGCTG+TGG + chr5_4:65532820-65532839 Msa0864950:CDS 40.0%
AGAAGAAGATGCTGTGGAAA+TGG + chr5_4:65532826-65532845 Msa0864950:CDS 40.0%
GATTGTCGCGATTATACCAA+TGG + chr5_4:65532899-65532918 Msa0864950:CDS 40.0%
CTGAAACGTTTGAGAAACCA+GGG + chr5_4:65533132-65533151 Msa0864950:CDS 40.0%
!! CCTCGATTTATTTGGCTTTG+AGG - chr5_4:65533467-65533486 None:intergenic 40.0%
CCTCAAAGCCAAATAAATCG+AGG + chr5_4:65533464-65533483 Msa0864950:three_prime_UTR 40.0%
ACATGTCCTAATCAAGGAAC+TGG + chr5_4:65533807-65533826 Msa0864950:three_prime_UTR 40.0%
AACACTCCAGTTCCTTGATT+AGG - chr5_4:65533816-65533835 None:intergenic 40.0%
AAGAATGGTAAGAGGCAGAG+AGG + chr5_4:65532266-65532285 Msa0864950:CDS 45.0%
! AATGCCTCTAAGGGCTTCAA+AGG + chr5_4:65532305-65532324 Msa0864950:CDS 45.0%
! ATGCCTCTAAGGGCTTCAAA+GGG + chr5_4:65532306-65532325 Msa0864950:CDS 45.0%
GCAGACATAAGCAATTGTGG+TGG - chr5_4:65532333-65532352 None:intergenic 45.0%
GCAGCAGACATAAGCAATTG+TGG - chr5_4:65532336-65532355 None:intergenic 45.0%
CAAACCTTCCTCACCTTCAA+AGG + chr5_4:65532401-65532420 Msa0864950:CDS 45.0%
! GAAACCTTTGAAGGTGAGGA+AGG - chr5_4:65532408-65532427 None:intergenic 45.0%
TTAGACGCTCTCTAAGCTTG+AGG - chr5_4:65532520-65532539 None:intergenic 45.0%
! GGTTTGGTCAGACAACTCAT+TGG + chr5_4:65533096-65533115 Msa0864950:intron 45.0%
GCTGAAACGTTTGAGAAACC+AGG + chr5_4:65533131-65533150 Msa0864950:CDS 45.0%
TGAATTACCTCTAGCTACCC+TGG - chr5_4:65533152-65533171 None:intergenic 45.0%
GAGGAAAGTGATCTTGGACA+TGG + chr5_4:65533483-65533502 Msa0864950:three_prime_UTR 45.0%
AAGAATGGTAAGAGGCAGAG+AGG + chr5_4:65532266-65532285 Msa0864950:CDS 45.0%
! AATGCCTCTAAGGGCTTCAA+AGG + chr5_4:65532305-65532324 Msa0864950:CDS 45.0%
! ATGCCTCTAAGGGCTTCAAA+GGG + chr5_4:65532306-65532325 Msa0864950:CDS 45.0%
GCAGACATAAGCAATTGTGG+TGG - chr5_4:65532333-65532352 None:intergenic 45.0%
GCAGCAGACATAAGCAATTG+TGG - chr5_4:65532336-65532355 None:intergenic 45.0%
CAAACCTTCCTCACCTTCAA+AGG + chr5_4:65532401-65532420 Msa0864950:CDS 45.0%
! GAAACCTTTGAAGGTGAGGA+AGG - chr5_4:65532408-65532427 None:intergenic 45.0%
TTAGACGCTCTCTAAGCTTG+AGG - chr5_4:65532520-65532539 None:intergenic 45.0%
! GGTTTGGTCAGACAACTCAT+TGG + chr5_4:65533096-65533115 Msa0864950:intron 45.0%
GCTGAAACGTTTGAGAAACC+AGG + chr5_4:65533131-65533150 Msa0864950:CDS 45.0%
TGAATTACCTCTAGCTACCC+TGG - chr5_4:65533152-65533171 None:intergenic 45.0%
GAGGAAAGTGATCTTGGACA+TGG + chr5_4:65533483-65533502 Msa0864950:three_prime_UTR 45.0%
! AGGCAGAGAGGAAGTGTATG+TGG + chr5_4:65532278-65532297 Msa0864950:CDS 50.0%
ATGTGGCAGCAATGCCTCTA+AGG + chr5_4:65532295-65532314 Msa0864950:CDS 50.0%
TGTGGCAGCAATGCCTCTAA+GGG + chr5_4:65532296-65532315 Msa0864950:CDS 50.0%
GTCCGAATGTTCACCATCGA+CGG + chr5_4:65532493-65532512 Msa0864950:intron 50.0%
GTCCGTCGATGGTGAACATT+CGG - chr5_4:65532498-65532517 None:intergenic 50.0%
!! GCGGCACTAGCAGTTTTATC+TGG + chr5_4:65532615-65532634 Msa0864950:CDS 50.0%
TTATCTGGTAGAGCTGTGCC+AGG + chr5_4:65532630-65532649 Msa0864950:CDS 50.0%
TCTCAGGAGCTGTTCTTGTG+AGG + chr5_4:65532756-65532775 Msa0864950:intron 50.0%
ACCAACCAGCATTTGCTTCG+CGG - chr5_4:65532797-65532816 None:intergenic 50.0%
! CGAAGCAAATGCTGGTTGGT+TGG + chr5_4:65532797-65532816 Msa0864950:CDS 50.0%
TGAGAAACCAGGGTAGCTAG+AGG + chr5_4:65533142-65533161 Msa0864950:CDS 50.0%
! AGGCAGAGAGGAAGTGTATG+TGG + chr5_4:65532278-65532297 Msa0864950:CDS 50.0%
ATGTGGCAGCAATGCCTCTA+AGG + chr5_4:65532295-65532314 Msa0864950:CDS 50.0%
TGTGGCAGCAATGCCTCTAA+GGG + chr5_4:65532296-65532315 Msa0864950:CDS 50.0%
GTCCGAATGTTCACCATCGA+CGG + chr5_4:65532493-65532512 Msa0864950:intron 50.0%
GTCCGTCGATGGTGAACATT+CGG - chr5_4:65532498-65532517 None:intergenic 50.0%
!! GCGGCACTAGCAGTTTTATC+TGG + chr5_4:65532615-65532634 Msa0864950:CDS 50.0%
TTATCTGGTAGAGCTGTGCC+AGG + chr5_4:65532630-65532649 Msa0864950:CDS 50.0%
TCTCAGGAGCTGTTCTTGTG+AGG + chr5_4:65532756-65532775 Msa0864950:intron 50.0%
ACCAACCAGCATTTGCTTCG+CGG - chr5_4:65532797-65532816 None:intergenic 50.0%
! CGAAGCAAATGCTGGTTGGT+TGG + chr5_4:65532797-65532816 Msa0864950:CDS 50.0%
TGAGAAACCAGGGTAGCTAG+AGG + chr5_4:65533142-65533161 Msa0864950:CDS 50.0%
!! GGTCCCTTTGAAGCCCTTAG+AGG - chr5_4:65532312-65532331 None:intergenic 55.0%
CTAAGCTTGAGGTCCGTCGA+TGG - chr5_4:65532509-65532528 None:intergenic 55.0%
GAGCTGTGCCAGGTCAGATT+TGG + chr5_4:65532640-65532659 Msa0864950:intron 55.0%
GATTGCCGCGAAGCAAATGC+TGG + chr5_4:65532789-65532808 Msa0864950:CDS 55.0%
!! GGTCCCTTTGAAGCCCTTAG+AGG - chr5_4:65532312-65532331 None:intergenic 55.0%
CTAAGCTTGAGGTCCGTCGA+TGG - chr5_4:65532509-65532528 None:intergenic 55.0%
GAGCTGTGCCAGGTCAGATT+TGG + chr5_4:65532640-65532659 Msa0864950:intron 55.0%
GATTGCCGCGAAGCAAATGC+TGG + chr5_4:65532789-65532808 Msa0864950:CDS 55.0%
GCCGCGAAGCAAATGCTGGT+TGG + chr5_4:65532793-65532812 Msa0864950:CDS 60.0%
GCCGCGAAGCAAATGCTGGT+TGG + chr5_4:65532793-65532812 Msa0864950:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 65532176 65533854 65532176 ID=Msa0864950;Name=Msa0864950
chr5_4 mRNA 65532176 65533854 65532176 ID=Msa0864950-mRNA-1;Parent=Msa0864950;Name=Msa0864950-mRNA-1;_AED=0.07;_eAED=0.07;_QI=67|1|1|1|0.6|0.5|6|617|161
chr5_4 exon 65532176 65532422 65532176 ID=Msa0864950-mRNA-1:exon:20663;Parent=Msa0864950-mRNA-1
chr5_4 exon 65532570 65532651 65532570 ID=Msa0864950-mRNA-1:exon:20664;Parent=Msa0864950-mRNA-1
chr5_4 exon 65532762 65532920 65532762 ID=Msa0864950-mRNA-1:exon:20665;Parent=Msa0864950-mRNA-1
chr5_4 exon 65533097 65533163 65533097 ID=Msa0864950-mRNA-1:exon:20666;Parent=Msa0864950-mRNA-1
chr5_4 exon 65533184 65533332 65533184 ID=Msa0864950-mRNA-1:exon:20667;Parent=Msa0864950-mRNA-1
chr5_4 exon 65533389 65533854 65533389 ID=Msa0864950-mRNA-1:exon:20668;Parent=Msa0864950-mRNA-1
chr5_4 five_prime_UTR 65532176 65532242 65532176 ID=Msa0864950-mRNA-1:five_prime_utr;Parent=Msa0864950-mRNA-1
chr5_4 CDS 65532243 65532422 65532243 ID=Msa0864950-mRNA-1:cds;Parent=Msa0864950-mRNA-1
chr5_4 CDS 65532570 65532651 65532570 ID=Msa0864950-mRNA-1:cds;Parent=Msa0864950-mRNA-1
chr5_4 CDS 65532762 65532920 65532762 ID=Msa0864950-mRNA-1:cds;Parent=Msa0864950-mRNA-1
chr5_4 CDS 65533097 65533161 65533097 ID=Msa0864950-mRNA-1:cds;Parent=Msa0864950-mRNA-1
chr5_4 three_prime_UTR 65533162 65533163 65533162 ID=Msa0864950-mRNA-1:three_prime_utr;Parent=Msa0864950-mRNA-1
chr5_4 three_prime_UTR 65533184 65533332 65533184 ID=Msa0864950-mRNA-1:three_prime_utr;Parent=Msa0864950-mRNA-1
chr5_4 three_prime_UTR 65533389 65533854 65533389 ID=Msa0864950-mRNA-1:three_prime_utr;Parent=Msa0864950-mRNA-1
Gene Sequence

>Msa0864950

ATGGAATCACTTGTATCAAAGACAAGAATGGTAAGAGGCAGAGAGGAAGTGTATGTGGCAGCAATGCCTCTAAGGGCTTCAAAGGGACCACCACAATTGCTTATGTCTGCTGCTTACTCCCTTAATATTTGGGATTTGCAGCATTTCATGGTCATCATCAAACCTTCCTCACCTTCAAAGGTTCTAGTTTTTGATTTTCAACCAAAAGATCCTGAAGATATATATGCGGCACTAGCAGTTTTATCTGGTAGAGCTGTGCCAGGAGCTGTTCTTGTGAGGAAGTTAAAAAGATTGCCGCGAAGCAAATGCTGGTTGGTTGGATATGCAGAAGAAGATGCTGTGGAAATGGCAAGTGAATTCAACAAAAAATGGGAAACAGATTTGAGAATCGGTGTTAATGATTGTCGCGATTATACCAATGGTTTGGTCAGACAACTCATTGGTGAAGAAGATGTGCTGAAACGTTTGAGAAACCAGGGTAGCTAG

Protein sequence

>Msa0864950

MESLVSKTRMVRGREEVYVAAMPLRASKGPPQLLMSAAYSLNIWDLQHFMVIIKPSSPSKVLVFDFQPKDPEDIYAALAVLSGRAVPGAVLVRKLKRLPRSKCWLVGYAEEDAVEMASEFNKKWETDLRIGVNDCRDYTNGLVRQLIGEEDVLKRLRNQGS*