AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0416990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416990 MtrunA17_Chr3g0114501 94.218 294 4 2 1 281 1 294 0.0 568
Msa0416990 MtrunA17_Chr7g0261731 52.941 289 115 6 3 271 12 299 2.32e-109 320
Msa0416990 MtrunA17_Chr7g0261751 51.342 298 126 5 2 281 11 307 2.40e-107 321
Msa0416990 MtrunA17_Chr7g0261791 53.242 293 117 5 4 277 11 302 3.23e-106 320
Msa0416990 MtrunA17_Chr7g0261771 50.505 297 128 5 2 280 11 306 2.02e-105 318
Msa0416990 MtrunA17_Chr7g0261881 52.013 298 124 5 2 281 7 303 3.15e-104 315
Msa0416990 MtrunA17_Chr1g0166791 52.013 298 125 4 1 281 3 299 7.67e-104 314
Msa0416990 MtrunA17_Chr1g0166711 52.560 293 121 4 6 281 9 300 9.32e-104 314
Msa0416990 MtrunA17_Chr7g0261851 52.203 295 122 5 5 281 11 304 4.97e-103 312
Msa0416990 MtrunA17_Chr1g0187241 51.342 298 125 5 3 281 7 303 2.45e-101 308
Msa0416990 MtrunA17_Chr7g0261811 50.168 297 129 5 2 280 7 302 7.25e-100 304
Msa0416990 MtrunA17_Chr1g0166741 49.829 293 129 4 6 281 11 302 4.98e-95 291
Msa0416990 MtrunA17_Chr8g0375311 43.878 294 150 4 2 281 20 312 4.08e-86 268
Msa0416990 MtrunA17_Chr8g0375291 44.218 294 149 4 2 281 20 312 3.09e-85 266
Msa0416990 MtrunA17_Chr7g0241741 44.710 293 146 5 3 281 2 292 2.26e-83 261
Msa0416990 MtrunA17_Chr1g0166771 49.618 262 114 4 37 281 6 266 3.25e-82 257
Msa0416990 MtrunA17_Chr8g0375331 41.781 292 155 4 4 281 6 296 3.33e-80 252
Msa0416990 MtrunA17_Chr8g0375321 41.096 292 157 4 4 281 19 309 5.07e-79 249
Msa0416990 MtrunA17_Chr3g0104011 43.197 294 153 3 1 281 1 293 2.66e-77 245
Msa0416990 MtrunA17_Chr8g0375351 40.816 294 159 4 2 281 20 312 5.08e-77 244
Msa0416990 MtrunA17_Chr8g0375341 41.156 294 158 4 2 281 20 312 8.03e-77 244
Msa0416990 MtrunA17_Chr4g0005901 43.345 293 149 5 4 281 12 302 3.63e-74 237
Msa0416990 MtrunA17_Chr8g0375361 41.297 293 155 5 5 281 20 311 3.29e-72 232
Msa0416990 MtrunA17_Chr3g0112671 38.889 270 150 4 4 260 15 282 2.45e-63 209
Msa0416990 MtrunA17_Chr4g0014871 40.767 287 143 7 1 273 9 282 3.34e-63 208
Msa0416990 MtrunA17_Chr7g0240381 37.248 298 167 5 1 281 4 298 6.77e-63 207
Msa0416990 MtrunA17_Chr3g0142111 38.328 287 161 5 10 281 34 319 7.80e-62 198
Msa0416990 MtrunA17_Chr4g0008651 36.271 295 170 5 2 281 12 303 1.22e-60 202
Msa0416990 MtrunA17_Chr3g0112611 36.986 292 165 6 4 281 14 300 3.72e-59 198
Msa0416990 MtrunA17_Chr3g0142101 37.847 288 161 6 10 281 23 308 4.77e-59 197
Msa0416990 MtrunA17_Chr4g0014791 42.642 265 128 5 10 260 17 271 2.02e-56 190
Msa0416990 MtrunA17_Chr3g0077151 40.370 270 132 5 8 260 14 271 9.92e-56 188
Msa0416990 MtrunA17_Chr3g0142091 37.063 286 162 6 13 281 17 301 3.99e-55 187
Msa0416990 MtrunA17_Chr4g0014801 42.264 265 129 6 10 260 17 271 5.18e-55 186
Msa0416990 MtrunA17_Chr4g0014841 41.971 274 134 6 1 260 9 271 1.17e-54 185
Msa0416990 MtrunA17_Chr4g0014781 41.509 265 131 5 10 260 17 271 6.48e-54 183
Msa0416990 MtrunA17_Chr7g0217461 33.446 296 172 6 5 281 7 296 6.52e-50 173
Msa0416990 MtrunA17_Chr5g0400371 32.872 289 177 5 5 277 95 382 4.75e-49 172
Msa0416990 MtrunA17_Chr7g0261661 46.032 189 83 5 110 280 1 188 1.37e-48 168
Msa0416990 MtrunA17_Chr5g0422881 34.066 273 164 4 24 281 22 293 1.94e-48 169
Msa0416990 MtrunA17_Chr4g0054891 32.877 292 179 5 2 277 90 380 2.03e-48 170
Msa0416990 MtrunA17_Chr8g0353031 47.340 188 81 2 23 208 19 190 3.99e-48 168
Msa0416990 MtrunA17_Chr7g0214731 34.098 305 176 7 1 281 38 341 5.66e-48 169
Msa0416990 MtrunA17_Chr1g0166731 46.316 190 84 4 109 281 9 197 1.88e-47 164
Msa0416990 MtrunA17_Chr7g0261671 62.264 106 40 0 3 108 13 118 2.64e-46 151
Msa0416990 MtrunA17_Chr1g0166721 62.500 104 39 0 5 108 8 111 1.19e-45 150
Msa0416990 MtrunA17_Chr7g0255611 32.500 280 171 6 13 277 22 298 5.01e-44 157
Msa0416990 MtrunA17_Chr4g0056431 36.934 287 161 7 14 281 17 302 1.33e-43 156
Msa0416990 MtrunA17_Chr5g0399061 35.507 276 161 6 14 273 19 293 1.67e-43 155
Msa0416990 MtrunA17_Chr1g0213711 31.757 296 184 7 1 281 1 293 2.40e-43 155
Msa0416990 MtrunA17_Chr5g0415791 37.452 259 136 8 16 254 27 279 3.28e-43 155
Msa0416990 MtrunA17_Chr5g0399071 38.403 263 145 5 14 260 17 278 4.07e-43 155
Msa0416990 MtrunA17_Chr5g0439381 36.101 277 157 4 4 261 10 285 7.71e-43 154
Msa0416990 MtrunA17_Chr7g0214461 31.560 282 175 6 16 281 72 351 9.43e-43 154
Msa0416990 MtrunA17_Chr4g0011041 31.000 300 181 7 2 281 16 309 3.56e-42 152
Msa0416990 MtrunA17_Chr1g0193391 30.420 286 180 5 10 281 3 283 1.61e-40 148
Msa0416990 MtrunA17_Chr2g0284701 31.915 282 174 5 1 264 11 292 3.44e-40 147
Msa0416990 MtrunA17_Chr7g0218851 33.451 284 169 7 16 281 40 321 3.56e-40 147
Msa0416990 MtrunA17_Chr7g0255621 32.946 258 157 5 18 260 16 272 4.63e-40 146
Msa0416990 MtrunA17_Chr3g0133341 32.700 263 156 4 18 260 10 271 1.64e-39 144
Msa0416990 MtrunA17_Chr7g0255601 32.714 269 165 5 24 277 29 296 3.19e-39 144
Msa0416990 MtrunA17_Chr8g0379971 30.508 295 171 5 4 264 2 296 1.99e-38 142
Msa0416990 MtrunA17_Chr4g0059991 31.786 280 168 7 21 281 21 296 2.59e-38 142
Msa0416990 MtrunA17_Chr4g0060001 33.708 267 148 7 12 253 14 276 3.93e-38 141
Msa0416990 MtrunA17_Chr7g0240271 32.090 268 166 5 2 254 4 270 8.44e-38 140
Msa0416990 MtrunA17_Chr1g0147631 30.435 299 170 7 4 269 11 304 5.19e-37 138
Msa0416990 MtrunA17_Chr7g0271221 31.111 270 170 4 24 281 19 284 4.49e-36 135
Msa0416990 MtrunA17_Chr4g0059971 32.800 250 151 5 28 261 40 288 5.74e-36 135
Msa0416990 MtrunA17_Chr1g0157601 29.643 280 162 6 26 273 19 295 1.08e-35 134
Msa0416990 MtrunA17_Chr4g0059981 32.365 241 145 4 28 251 37 276 7.19e-35 132
Msa0416990 MtrunA17_Chr4g0063591 35.417 288 170 5 1 273 1 287 1.43e-34 131
Msa0416990 MtrunA17_Chr2g0276751 30.743 296 176 8 2 281 18 300 3.43e-34 130
Msa0416990 MtrunA17_Chr8g0390331 30.576 278 165 7 1 262 5 270 1.03e-33 129
Msa0416990 MtrunA17_Chr5g0415961 31.418 261 163 4 1 246 3 262 1.13e-33 129
Msa0416990 MtrunA17_Chr2g0331471 30.634 284 160 8 24 273 90 370 2.87e-33 128
Msa0416990 MtrunA17_Chr7g0240281 31.174 247 154 4 24 254 26 272 3.16e-33 127
Msa0416990 MtrunA17_Chr2g0331481 31.273 275 152 8 33 273 36 307 1.61e-32 125
Msa0416990 MtrunA17_Chr8g0362711 30.651 261 165 4 1 246 3 262 5.29e-32 124
Msa0416990 MtrunA17_Chr4g0014851 47.222 108 57 0 1 108 9 116 1.77e-31 114
Msa0416990 MtrunA17_Chr1g0157611 29.893 281 160 7 26 273 20 296 1.07e-30 120
Msa0416990 MtrunA17_Chr4g0003761 28.571 308 174 11 1 273 16 312 2.09e-30 119
Msa0416990 MtrunA17_Chr2g0331521 26.000 300 186 8 6 273 10 305 5.17e-30 118
Msa0416990 MtrunA17_Chr2g0331511 30.627 271 153 7 33 269 32 301 6.09e-30 118
Msa0416990 MtrunA17_Chr8g0362781 28.906 256 162 4 16 252 24 278 6.46e-30 118
Msa0416990 MtrunA17_Chr4g0011471 30.116 259 154 6 43 281 37 288 2.72e-28 113
Msa0416990 MtrunA17_Chr2g0331461 30.545 275 154 9 33 273 36 307 4.47e-28 113
Msa0416990 MtrunA17_Chr3g0112651 36.364 165 90 4 109 260 21 183 2.08e-27 105
Msa0416990 MtrunA17_Chr4g0069581 28.295 258 163 6 40 281 4 255 4.76e-27 110
Msa0416990 MtrunA17_Chr2g0326211 29.537 281 170 7 10 268 2 276 1.26e-26 108
Msa0416990 MtrunA17_Chr3g0112661 43.137 102 58 0 7 108 16 117 4.00e-26 100
Msa0416990 MtrunA17_Chr8g0379991 27.881 269 146 7 43 265 1 267 6.36e-25 103
Msa0416990 MtrunA17_Chr2g0325951 28.148 270 166 8 10 257 2 265 9.10e-24 100
Msa0416990 MtrunA17_Chr1g0177591 27.451 306 175 13 1 273 24 315 1.86e-23 99.8
Msa0416990 MtrunA17_Chr6g0451841 32.110 218 117 4 30 225 13 221 1.05e-22 97.4
Msa0416990 MtrunA17_Chr4g0014861 39.073 151 73 5 137 273 12 157 3.47e-22 95.5
Msa0416990 MtrunA17_Chr1g0157621 28.137 263 154 6 43 273 1 260 8.12e-22 94.7
Msa0416990 MtrunA17_Chr2g0325961 30.515 272 161 7 10 259 2 267 5.94e-21 92.4
Msa0416990 MtrunA17_Chr3g0082621 53.521 71 33 0 38 108 2 72 3.28e-18 77.8
Msa0416990 MtrunA17_Chr7g0240221 37.895 95 59 0 2 96 7 101 1.60e-17 76.6
Msa0416990 MtrunA17_Chr7g0240191 37.895 95 59 0 2 96 7 101 1.60e-17 76.6
Msa0416990 MtrunA17_Chr7g0240161 37.895 95 59 0 2 96 7 101 1.60e-17 76.6
Msa0416990 MtrunA17_Chr7g0240141 37.895 95 59 0 2 96 7 101 1.69e-17 76.6
Msa0416990 MtrunA17_Chr8g0362791 40.000 85 51 0 28 112 42 126 3.85e-17 76.3
Msa0416990 MtrunA17_Chr7g0235511 37.113 97 59 1 2 96 7 103 1.18e-15 71.6
Msa0416990 MtrunA17_Chr4g0060061 31.008 129 80 3 127 246 4 132 7.95e-15 69.7
Msa0416990 MtrunA17_Chr3g0082631 30.000 160 82 4 104 250 9 151 2.73e-14 72.4
Msa0416990 MtrunA17_Chr8g0362801 33.577 137 77 3 131 254 28 163 3.29e-14 72.4
Msa0416990 MtrunA17_Chr1g0147591 33.121 157 67 7 146 269 9 160 8.14e-14 68.6
Msa0416990 MtrunA17_Chr7g0240151 30.000 160 96 5 110 254 1 159 2.83e-12 66.6
Msa0416990 MtrunA17_Chr7g0240211 30.000 160 96 5 110 254 1 159 2.91e-12 66.6
Msa0416990 MtrunA17_Chr7g0235521 30.000 160 96 5 110 254 1 159 3.01e-12 66.6
Msa0416990 MtrunA17_Chr7g0240181 30.000 160 96 5 110 254 1 159 3.04e-12 66.6
Msa0416990 MtrunA17_Chr7g0240131 29.375 160 97 5 110 254 1 159 1.82e-11 63.9
Msa0416990 MtrunA17_Chr7g0234381 32.800 125 67 4 138 249 28 148 2.74e-11 63.5
Msa0416990 MtrunA17_Chr1g0177611 28.205 156 82 5 146 273 33 186 6.34e-11 62.4
Msa0416990 MtrunA17_Chr7g0234181 32.800 125 67 4 138 249 23 143 8.20e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416990 AT2G40460.1 68.027 294 81 2 1 281 1 294 2.47e-145 420
Msa0416990 AT5G46050.1 48.485 297 135 4 2 281 5 300 3.03e-92 284
Msa0416990 AT5G46040.1 48.993 298 132 6 2 281 5 300 1.63e-91 282
Msa0416990 AT2G02040.1 44.561 285 143 4 7 277 24 307 1.47e-84 265
Msa0416990 AT3G54140.1 44.898 294 148 3 1 281 1 293 1.70e-83 261
Msa0416990 AT3G54140.2 44.898 294 148 3 1 281 1 293 1.70e-83 261
Msa0416990 AT1G62200.1 44.755 286 140 4 9 277 37 321 3.62e-82 258
Msa0416990 AT1G62200.2 44.755 286 140 4 9 277 37 321 6.57e-82 258
Msa0416990 AT5G01180.2 44.369 293 149 4 1 280 1 292 6.89e-82 257
Msa0416990 AT5G01180.3 44.369 293 149 4 1 280 1 292 6.89e-82 257
Msa0416990 AT5G01180.1 44.369 293 149 4 1 280 1 292 6.89e-82 257
Msa0416990 AT1G62200.3 44.755 286 140 4 9 277 51 335 9.33e-82 258
Msa0416990 AT2G02020.2 43.333 270 138 4 2 257 20 288 4.94e-76 241
Msa0416990 AT2G02020.1 43.333 270 138 4 2 257 20 288 8.94e-76 241
Msa0416990 AT2G37900.1 38.235 272 153 4 2 260 16 285 8.04e-63 207
Msa0416990 AT3G53960.1 36.823 277 160 4 2 265 15 289 2.72e-60 201
Msa0416990 AT1G22570.1 41.935 279 142 5 5 264 12 289 1.24e-56 191
Msa0416990 AT1G72120.1 41.877 277 136 7 4 264 10 277 8.18e-56 189
Msa0416990 AT1G72125.1 42.754 276 133 8 4 263 10 276 1.03e-55 188
Msa0416990 AT1G22540.1 41.767 249 130 4 12 246 18 265 1.06e-55 188
Msa0416990 AT1G68570.1 37.729 273 152 5 2 259 3 272 6.57e-52 179
Msa0416990 AT1G72140.1 37.736 265 139 6 12 254 22 282 1.76e-50 174
Msa0416990 AT1G22550.1 39.643 280 142 6 5 264 12 284 9.48e-50 172
Msa0416990 AT1G68570.2 40.506 237 125 4 38 259 7 242 3.75e-49 171
Msa0416990 AT5G13400.1 35.069 288 163 6 13 277 52 338 2.08e-48 170
Msa0416990 AT3G54450.1 39.662 237 116 4 26 249 14 236 3.24e-48 168
Msa0416990 AT1G12110.1 34.000 300 177 6 2 281 5 303 1.96e-47 167
Msa0416990 AT1G22570.2 41.365 249 127 4 35 264 4 252 2.69e-47 166
Msa0416990 AT1G72130.1 41.004 239 119 4 25 248 26 257 4.91e-46 162
Msa0416990 AT2G26690.1 38.596 285 154 6 1 265 1 284 5.07e-45 160
Msa0416990 AT2G37900.2 39.614 207 110 4 67 260 2 206 3.59e-44 156
Msa0416990 AT4G21680.1 31.058 293 182 5 5 281 9 297 3.82e-43 155
Msa0416990 AT3G21670.1 36.194 268 151 4 14 262 19 285 8.27e-43 154
Msa0416990 AT1G32450.1 30.405 296 186 7 5 281 18 312 1.17e-42 154
Msa0416990 AT5G46050.2 43.915 189 88 4 110 281 1 188 3.07e-42 151
Msa0416990 AT1G59740.1 30.976 297 187 4 2 281 19 314 6.55e-42 152
Msa0416990 AT1G52190.1 31.494 308 164 7 2 273 9 305 1.47e-40 148
Msa0416990 AT1G18880.1 33.466 251 148 6 28 261 23 271 1.89e-38 142
Msa0416990 AT1G69860.1 32.941 255 151 6 28 264 22 274 1.13e-37 140
Msa0416990 AT5G28470.2 34.137 249 149 6 21 254 14 262 3.08e-37 139
Msa0416990 AT5G28470.1 34.137 249 149 6 21 254 14 262 3.09e-37 139
Msa0416990 AT1G69870.1 33.466 251 149 4 21 254 48 297 6.34e-37 138
Msa0416990 AT3G16180.1 32.971 276 149 8 33 273 32 306 6.55e-37 138
Msa0416990 AT5G19640.1 30.112 269 167 6 25 277 60 323 3.48e-36 136
Msa0416990 AT1G33440.1 34.286 280 158 6 1 260 15 288 1.13e-35 135
Msa0416990 AT1G69850.1 29.195 298 179 7 1 274 1 290 3.50e-35 133
Msa0416990 AT3G25260.1 33.468 248 144 5 14 248 11 250 1.88e-34 130
Msa0416990 AT2G26690.2 38.000 250 134 6 36 265 3 251 2.28e-34 130
Msa0416990 AT3G45690.1 31.496 254 152 7 23 260 17 264 6.37e-33 126
Msa0416990 AT5G62680.1 28.996 269 163 5 4 255 33 290 7.18e-32 124
Msa0416990 AT2G26690.3 38.075 239 127 6 47 265 2 239 1.91e-31 122
Msa0416990 AT3G47960.1 32.510 243 148 5 28 255 65 306 6.01e-31 122
Msa0416990 AT5G14940.1 38.278 209 105 6 24 217 7 206 6.37e-31 121
Msa0416990 AT3G45680.1 29.927 274 168 8 10 267 8 273 1.84e-30 120
Msa0416990 AT3G45650.2 26.766 269 175 6 8 260 6 268 5.54e-29 115
Msa0416990 AT5G62730.1 29.167 264 157 5 2 248 34 284 5.70e-29 115
Msa0416990 AT3G45650.1 26.766 269 175 6 8 260 6 268 6.25e-29 115
Msa0416990 AT1G27040.1 30.657 274 171 6 10 265 13 285 7.11e-29 115
Msa0416990 AT1G27040.2 30.657 274 171 6 10 265 9 281 7.41e-29 115
Msa0416990 AT3G25280.1 30.634 284 165 7 5 275 2 266 2.31e-28 114
Msa0416990 AT3G01350.1 31.618 272 143 9 26 264 9 270 5.24e-28 113
Msa0416990 AT3G45700.1 29.457 258 160 7 23 264 15 266 8.55e-28 112
Msa0416990 AT3G45710.1 28.205 273 173 8 8 263 4 270 2.06e-27 111
Msa0416990 AT1G27080.1 30.612 245 151 5 24 251 14 256 4.26e-26 107
Msa0416990 AT3G45660.1 28.632 234 145 5 43 260 40 267 5.26e-26 107
Msa0416990 AT3G45660.3 28.632 234 145 5 43 260 40 267 5.26e-26 107
Msa0416990 AT3G45660.2 28.632 234 145 5 43 260 61 288 5.83e-26 107
Msa0416990 AT3G45720.1 29.876 241 144 8 46 267 41 275 5.33e-25 104
Msa0416990 AT1G27040.3 30.830 253 156 6 31 265 2 253 9.15e-25 103
Msa0416990 AT5G62730.2 29.237 236 137 5 30 248 3 225 2.75e-24 102
Msa0416990 AT5G11570.1 25.417 240 144 7 16 234 15 240 1.82e-20 91.3
Msa0416990 AT1G72130.2 42.857 126 57 3 138 248 14 139 1.99e-19 87.8
Msa0416990 AT1G72130.3 42.857 126 57 3 138 248 14 139 1.99e-19 87.8
Msa0416990 AT1G27080.2 29.907 214 131 5 55 251 3 214 1.23e-17 83.2

Find 69 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGAACATTGTGTTATT+AGG 0.143035 3_2:-64083443 Msa0416990:CDS
TGTATATTTAATATCTTTAA+TGG 0.162276 3_2:-64085088 Msa0416990:exon
TCCTCATGAGAAAGAGTTAA+AGG 0.194574 3_2:-64083750 Msa0416990:CDS
TAAAGGCTTCTTTCTTTAAT+TGG 0.203778 3_2:-64083733 Msa0416990:CDS
GCAACAAAAGTTGAGATATT+TGG 0.212859 3_2:+64083794 None:intergenic
AGCCTTCCATTTCCCAGTTT+TGG 0.219265 3_2:+64085002 None:intergenic
ATTCTTACCTGGGTCGCTTC+TGG 0.236583 3_2:-64084636 Msa0416990:CDS
AATGGAACATTGTGTTATTA+GGG 0.240985 3_2:-64083442 Msa0416990:CDS
GTATATATTCAAGAGAATTT+AGG 0.251074 3_2:-64083662 Msa0416990:CDS
AAGTCCTAAAGTTGCAATTA+AGG 0.275904 3_2:+64083685 None:intergenic
CTAACTTTGTGTCGATAAAT+TGG 0.279561 3_2:+64083570 None:intergenic
CCTGCTGTTCCATCCAAAAC+TGG 0.284363 3_2:-64085015 Msa0416990:CDS
ATCATGGGTATAGTCTTCTT+TGG 0.286104 3_2:+64085062 None:intergenic
TTAGGATGGGGACTTGGATA+TGG 0.322007 3_2:-64083644 Msa0416990:CDS
TTTGAAAGGATGGCCTTCTA+TGG 0.336648 3_2:-64084787 Msa0416990:CDS
ATTGTGTTATTAGGGGAAAA+AGG 0.344611 3_2:-64083434 Msa0416990:CDS
GGTGCCTTAATTGCAACTTT+AGG 0.347795 3_2:-64083689 Msa0416990:CDS
GTTTGGATAACACCAATTCT+TGG 0.350998 3_2:-64084673 Msa0416990:CDS
CTCATCTCTCATTTATGTCT+TGG 0.355515 3_2:-64084602 Msa0416990:intron
TTGAAGTTTCCTATTCTTGA+AGG 0.363446 3_2:+64083500 None:intergenic
GAGGATTAAAATCATCAAAT+TGG 0.372384 3_2:+64083768 None:intergenic
AGGAATGTTAATACATGGTC+AGG 0.381248 3_2:-64084700 Msa0416990:CDS
CAATTTATCGACACAAAGTT+AGG 0.392936 3_2:-64083569 Msa0416990:CDS
AAGATACTGTTTCATCAGTT+AGG 0.396676 3_2:-64084720 Msa0416990:CDS
TTATTGTTGCCTTCAAGAAT+AGG 0.406934 3_2:-64083509 Msa0416990:CDS
ATACATGGTCAGGGTCTGTT+TGG 0.412198 3_2:-64084690 Msa0416990:CDS
TTCCATCCAAAACTGGGAAA+TGG 0.419022 3_2:-64085008 Msa0416990:CDS
GTTTGATGCAACTCCATAGA+AGG 0.419937 3_2:+64084774 None:intergenic
CTTCATGAAGTTGTGTTGTA+AGG 0.420306 3_2:+64084740 None:intergenic
CTATGGAGTTGCATCAAACT+TGG 0.433756 3_2:-64084770 Msa0416990:CDS
GCACTTTACACAATGGCAAT+TGG 0.443556 3_2:-64083833 Msa0416990:intron
CAAATTCCATTTGTGCATGT+TGG 0.447193 3_2:+64083896 None:intergenic
TGTAGATCTGAAGGGTTACT+AGG 0.449676 3_2:+64083474 None:intergenic
ACACTTGCTTACCTCAAAGT+TGG 0.452079 3_2:+64083396 None:intergenic
TCTATCACACTCCAACTTTG+AGG 0.456422 3_2:-64083407 Msa0416990:CDS
AGGCTTCTTTCTTTAATTGG+TGG 0.457739 3_2:-64083730 Msa0416990:CDS
GAGAATTTAGGATGGGGACT+TGG 0.459132 3_2:-64083650 Msa0416990:CDS
GGATATGGTATTCCTACTGC+TGG 0.460012 3_2:-64083629 Msa0416990:intron
GCAATGTAAGCACCAAGAAT+TGG 0.467213 3_2:+64084661 None:intergenic
TTACATTGCAGATTCTTACC+TGG 0.476724 3_2:-64084647 Msa0416990:CDS
AGATCTACATGAGTTTCAAA+TGG 0.478491 3_2:-64083460 Msa0416990:CDS
TTGAAACCAACATGCACAAA+TGG 0.494777 3_2:-64083902 Msa0416990:CDS
TACATTGCAGATTCTTACCT+GGG 0.494969 3_2:-64084646 Msa0416990:CDS
GGAAATCAACAGTTCCATCA+TGG 0.497099 3_2:+64085046 None:intergenic
TGAAACTCATGTAGATCTGA+AGG 0.512547 3_2:+64083465 None:intergenic
GCCTTTAACTCTTTCTCATG+AGG 0.529898 3_2:+64083749 None:intergenic
AAAGAAGACTATACCCATGA+TGG 0.538056 3_2:-64085060 Msa0416990:CDS
GACATCTAAAAGTCCTGCTA+AGG 0.544118 3_2:-64083547 Msa0416990:CDS
ACACGAATTATATCCTTAGC+AGG 0.545832 3_2:+64083534 None:intergenic
GAAATCAACAGTTCCATCAT+GGG 0.552746 3_2:+64085047 None:intergenic
TATTCAAGAGAATTTAGGAT+GGG 0.557111 3_2:-64083657 Msa0416990:CDS
CTGCTGTTCCATCCAAAACT+GGG 0.558606 3_2:-64085014 Msa0416990:CDS
CAGTTAGGAATGTTAATACA+TGG 0.561918 3_2:-64084705 Msa0416990:CDS
GTATGAAGCATTTGAAAGGA+TGG 0.563974 3_2:-64084797 Msa0416990:CDS
CAGGGTATGAAGCATTTGAA+AGG 0.571557 3_2:-64084801 Msa0416990:CDS
TGAAAGTCCAGAAGCGACCC+AGG 0.586084 3_2:+64084629 None:intergenic
GATGGAACTGTTGATTTCCA+CGG 0.587530 3_2:-64085042 Msa0416990:CDS
ATGGAACAGCAGGTTTGCCG+TGG 0.589059 3_2:+64085025 None:intergenic
GACATAAATGAGAGATGAGA+GGG 0.589839 3_2:+64084606 None:intergenic
GACAATAATAAACCAGCAGT+AGG 0.594102 3_2:+64083617 None:intergenic
ATATTCAAGAGAATTTAGGA+TGG 0.594332 3_2:-64083658 Msa0416990:CDS
CACAAATGGAATTTGCAGCA+AGG 0.597795 3_2:-64083888 Msa0416990:CDS
GAAACTCATGTAGATCTGAA+GGG 0.608617 3_2:+64083466 None:intergenic
ATTCAAGAGAATTTAGGATG+GGG 0.609796 3_2:-64083656 Msa0416990:CDS
ATCCAAAACTGGGAAATGGA+AGG 0.616857 3_2:-64085004 Msa0416990:CDS
ATGGAACATTGTGTTATTAG+GGG 0.621546 3_2:-64083441 Msa0416990:CDS
CTACACAGCACTTTACACAA+TGG 0.627388 3_2:-64083840 Msa0416990:CDS
AGACATAAATGAGAGATGAG+AGG 0.629204 3_2:+64084605 None:intergenic
GGAATGTTAATACATGGTCA+GGG 0.669674 3_2:-64084699 Msa0416990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATATTTAATATCTTTAA+TGG - chr3_2:64083457-64083476 Msa0416990:CDS 10.0%
!! CTTAATAATTGTTTATATTA+TGG - chr3_2:64083671-64083690 Msa0416990:CDS 10.0%
!! TAATAATTGTTTATATTATG+GGG - chr3_2:64083673-64083692 Msa0416990:CDS 10.0%
!! TTACTTATATATATTAATTC+AGG - chr3_2:64083725-64083744 Msa0416990:CDS 10.0%
!! TACTTATATATATTAATTCA+GGG - chr3_2:64083726-64083745 Msa0416990:CDS 10.0%
!!! ATTATATTTGAGTTAATATT+AGG + chr3_2:64083976-64083995 None:intergenic 10.0%
!! TGTATATTTAATATCTTTAA+TGG - chr3_2:64083457-64083476 Msa0416990:CDS 10.0%
!! CTTAATAATTGTTTATATTA+TGG - chr3_2:64083671-64083690 Msa0416990:CDS 10.0%
!! TAATAATTGTTTATATTATG+GGG - chr3_2:64083673-64083692 Msa0416990:CDS 10.0%
!! TTACTTATATATATTAATTC+AGG - chr3_2:64083725-64083744 Msa0416990:CDS 10.0%
!! TACTTATATATATTAATTCA+GGG - chr3_2:64083726-64083745 Msa0416990:CDS 10.0%
!!! ATTATATTTGAGTTAATATT+AGG + chr3_2:64083976-64083995 None:intergenic 10.0%
!! AAAGACAAAAATAAAGTATA+AGG + chr3_2:64083434-64083453 None:intergenic 15.0%
!! ATATATAAGTAAAAACCTAT+AGG + chr3_2:64083717-64083736 None:intergenic 15.0%
!! TGAAGTTATAACTTTATAAT+CGG + chr3_2:64084002-64084021 None:intergenic 15.0%
!! ATTAATAATTCATGTTAACA+TGG + chr3_2:64084059-64084078 None:intergenic 15.0%
!!! TCTTTGTTATTTTCTATATA+GGG - chr3_2:64084949-64084968 Msa0416990:intron 15.0%
!! AAAGACAAAAATAAAGTATA+AGG + chr3_2:64083434-64083453 None:intergenic 15.0%
!! ATATATAAGTAAAAACCTAT+AGG + chr3_2:64083717-64083736 None:intergenic 15.0%
!! TGAAGTTATAACTTTATAAT+CGG + chr3_2:64084002-64084021 None:intergenic 15.0%
!! ATTAATAATTCATGTTAACA+TGG + chr3_2:64084059-64084078 None:intergenic 15.0%
!!! TCTTTGTTATTTTCTATATA+GGG - chr3_2:64084949-64084968 Msa0416990:intron 15.0%
!!! ATGCATGTTTTGTTAAATTT+TGG - chr3_2:64083594-64083613 Msa0416990:intron 20.0%
!! GTATATATTCAAGAGAATTT+AGG - chr3_2:64084883-64084902 Msa0416990:intron 20.0%
!!! GTCTTTGTTATTTTCTATAT+AGG - chr3_2:64084948-64084967 Msa0416990:intron 20.0%
!!! ATGCATGTTTTGTTAAATTT+TGG - chr3_2:64083594-64083613 Msa0416990:intron 20.0%
!! GTATATATTCAAGAGAATTT+AGG - chr3_2:64084883-64084902 Msa0416990:intron 20.0%
!!! GTCTTTGTTATTTTCTATAT+AGG - chr3_2:64084948-64084967 Msa0416990:intron 20.0%
! TATATATAGCATGATCCTAT+AGG - chr3_2:64083699-64083718 Msa0416990:CDS 25.0%
!! AAGCATAGCAATTTAAAACA+AGG + chr3_2:64084279-64084298 None:intergenic 25.0%
!!! CATTTTTTTCCATCAATTCA+AGG + chr3_2:64084438-64084457 None:intergenic 25.0%
! GAGGATTAAAATCATCAAAT+TGG + chr3_2:64084780-64084799 None:intergenic 25.0%
! TAAAGGCTTCTTTCTTTAAT+TGG - chr3_2:64084812-64084831 Msa0416990:intron 25.0%
! ATATTCAAGAGAATTTAGGA+TGG - chr3_2:64084887-64084906 Msa0416990:intron 25.0%
!! TATTCAAGAGAATTTAGGAT+GGG - chr3_2:64084888-64084907 Msa0416990:intron 25.0%
!! AAATGGAACATTGTGTTATT+AGG - chr3_2:64085102-64085121 Msa0416990:five_prime_UTR 25.0%
!! AATGGAACATTGTGTTATTA+GGG - chr3_2:64085103-64085122 Msa0416990:five_prime_UTR 25.0%
! TATATATAGCATGATCCTAT+AGG - chr3_2:64083699-64083718 Msa0416990:CDS 25.0%
!! AAGCATAGCAATTTAAAACA+AGG + chr3_2:64084279-64084298 None:intergenic 25.0%
!!! CATTTTTTTCCATCAATTCA+AGG + chr3_2:64084438-64084457 None:intergenic 25.0%
! GAGGATTAAAATCATCAAAT+TGG + chr3_2:64084780-64084799 None:intergenic 25.0%
! TAAAGGCTTCTTTCTTTAAT+TGG - chr3_2:64084812-64084831 Msa0416990:intron 25.0%
! ATATTCAAGAGAATTTAGGA+TGG - chr3_2:64084887-64084906 Msa0416990:intron 25.0%
!! TATTCAAGAGAATTTAGGAT+GGG - chr3_2:64084888-64084907 Msa0416990:intron 25.0%
!! AAATGGAACATTGTGTTATT+AGG - chr3_2:64085102-64085121 Msa0416990:five_prime_UTR 25.0%
!! AATGGAACATTGTGTTATTA+GGG - chr3_2:64085103-64085122 Msa0416990:five_prime_UTR 25.0%
AAGATACTGTTTCATCAGTT+AGG - chr3_2:64083825-64083844 Msa0416990:intron 30.0%
CAGTTAGGAATGTTAATACA+TGG - chr3_2:64083840-64083859 Msa0416990:CDS 30.0%
TAACTTCATAACCACTTGTT+TGG - chr3_2:64084014-64084033 Msa0416990:intron 30.0%
TTGGACCATAAGACAATTAA+AGG - chr3_2:64084033-64084052 Msa0416990:intron 30.0%
AAATTGCTATGCTTACCAAT+TGG - chr3_2:64084285-64084304 Msa0416990:intron 30.0%
GCTACATGTCATAAATAAGT+TGG + chr3_2:64084393-64084412 None:intergenic 30.0%
! TTTTTCCATCAATTCAAGGT+GGG + chr3_2:64084434-64084453 None:intergenic 30.0%
!!! TTTTTTCCATCAATTCAAGG+TGG + chr3_2:64084435-64084454 None:intergenic 30.0%
ACTCTTATGAATGATCACTT+TGG - chr3_2:64084462-64084481 Msa0416990:intron 30.0%
GCAACAAAAGTTGAGATATT+TGG + chr3_2:64084754-64084773 None:intergenic 30.0%
!! TGGATGTTTACCTCATTTTT+AGG - chr3_2:64084835-64084854 Msa0416990:intron 30.0%
! AATTAAGGCACCTAAAAATG+AGG + chr3_2:64084848-64084867 None:intergenic 30.0%
AAGTCCTAAAGTTGCAATTA+AGG + chr3_2:64084863-64084882 None:intergenic 30.0%
! ATTCAAGAGAATTTAGGATG+GGG - chr3_2:64084889-64084908 Msa0416990:intron 30.0%
! CTAACTTTGTGTCGATAAAT+TGG + chr3_2:64084978-64084997 None:intergenic 30.0%
CAATTTATCGACACAAAGTT+AGG - chr3_2:64084976-64084995 Msa0416990:intron 30.0%
TTATTGTTGCCTTCAAGAAT+AGG - chr3_2:64085036-64085055 Msa0416990:CDS 30.0%
TTGAAGTTTCCTATTCTTGA+AGG + chr3_2:64085048-64085067 None:intergenic 30.0%
AGATCTACATGAGTTTCAAA+TGG - chr3_2:64085085-64085104 Msa0416990:exon 30.0%
! ATGGAACATTGTGTTATTAG+GGG - chr3_2:64085104-64085123 Msa0416990:five_prime_UTR 30.0%
! ATTGTGTTATTAGGGGAAAA+AGG - chr3_2:64085111-64085130 Msa0416990:five_prime_UTR 30.0%
AAGATACTGTTTCATCAGTT+AGG - chr3_2:64083825-64083844 Msa0416990:intron 30.0%
CAGTTAGGAATGTTAATACA+TGG - chr3_2:64083840-64083859 Msa0416990:CDS 30.0%
TAACTTCATAACCACTTGTT+TGG - chr3_2:64084014-64084033 Msa0416990:intron 30.0%
TTGGACCATAAGACAATTAA+AGG - chr3_2:64084033-64084052 Msa0416990:intron 30.0%
AAATTGCTATGCTTACCAAT+TGG - chr3_2:64084285-64084304 Msa0416990:intron 30.0%
GCTACATGTCATAAATAAGT+TGG + chr3_2:64084393-64084412 None:intergenic 30.0%
! TTTTTCCATCAATTCAAGGT+GGG + chr3_2:64084434-64084453 None:intergenic 30.0%
!!! TTTTTTCCATCAATTCAAGG+TGG + chr3_2:64084435-64084454 None:intergenic 30.0%
ACTCTTATGAATGATCACTT+TGG - chr3_2:64084462-64084481 Msa0416990:intron 30.0%
GCAACAAAAGTTGAGATATT+TGG + chr3_2:64084754-64084773 None:intergenic 30.0%
!! TGGATGTTTACCTCATTTTT+AGG - chr3_2:64084835-64084854 Msa0416990:intron 30.0%
! AATTAAGGCACCTAAAAATG+AGG + chr3_2:64084848-64084867 None:intergenic 30.0%
AAGTCCTAAAGTTGCAATTA+AGG + chr3_2:64084863-64084882 None:intergenic 30.0%
! ATTCAAGAGAATTTAGGATG+GGG - chr3_2:64084889-64084908 Msa0416990:intron 30.0%
! CTAACTTTGTGTCGATAAAT+TGG + chr3_2:64084978-64084997 None:intergenic 30.0%
CAATTTATCGACACAAAGTT+AGG - chr3_2:64084976-64084995 Msa0416990:intron 30.0%
TTATTGTTGCCTTCAAGAAT+AGG - chr3_2:64085036-64085055 Msa0416990:CDS 30.0%
TTGAAGTTTCCTATTCTTGA+AGG + chr3_2:64085048-64085067 None:intergenic 30.0%
AGATCTACATGAGTTTCAAA+TGG - chr3_2:64085085-64085104 Msa0416990:exon 30.0%
! ATGGAACATTGTGTTATTAG+GGG - chr3_2:64085104-64085123 Msa0416990:five_prime_UTR 30.0%
! ATTGTGTTATTAGGGGAAAA+AGG - chr3_2:64085111-64085130 Msa0416990:five_prime_UTR 30.0%
ATCATGGGTATAGTCTTCTT+TGG + chr3_2:64083486-64083505 None:intergenic 35.0%
AAAGAAGACTATACCCATGA+TGG - chr3_2:64083485-64083504 Msa0416990:CDS 35.0%
GAAATCAACAGTTCCATCAT+GGG + chr3_2:64083501-64083520 None:intergenic 35.0%
! GTATGAAGCATTTGAAAGGA+TGG - chr3_2:64083748-64083767 Msa0416990:CDS 35.0%
CTTCATGAAGTTGTGTTGTA+AGG + chr3_2:64083808-64083827 None:intergenic 35.0%
AGGAATGTTAATACATGGTC+AGG - chr3_2:64083845-64083864 Msa0416990:CDS 35.0%
GGAATGTTAATACATGGTCA+GGG - chr3_2:64083846-64083865 Msa0416990:CDS 35.0%
GTTTGGATAACACCAATTCT+TGG - chr3_2:64083872-64083891 Msa0416990:CDS 35.0%
TTACATTGCAGATTCTTACC+TGG - chr3_2:64083898-64083917 Msa0416990:CDS 35.0%
TACATTGCAGATTCTTACCT+GGG - chr3_2:64083899-64083918 Msa0416990:CDS 35.0%
GACATAAATGAGAGATGAGA+GGG + chr3_2:64083942-64083961 None:intergenic 35.0%
AGACATAAATGAGAGATGAG+AGG + chr3_2:64083943-64083962 None:intergenic 35.0%
CTCATCTCTCATTTATGTCT+TGG - chr3_2:64083943-64083962 Msa0416990:CDS 35.0%
CATGGCCTTTAATTGTCTTA+TGG + chr3_2:64084041-64084060 None:intergenic 35.0%
TTAACGCTGCTATGTTCTTA+AGG + chr3_2:64084113-64084132 None:intergenic 35.0%
CAAGACGAGTAAAACCATAA+TGG + chr3_2:64084160-64084179 None:intergenic 35.0%
!! CTTTGGTTACCTCATTTTTG+TGG - chr3_2:64084479-64084498 Msa0416990:intron 35.0%
TTAATTCCTCTACACATCAC+AGG - chr3_2:64084582-64084601 Msa0416990:intron 35.0%
TAATTCCTCTACACATCACA+GGG - chr3_2:64084583-64084602 Msa0416990:intron 35.0%
TTGAAACCAACATGCACAAA+TGG - chr3_2:64084643-64084662 Msa0416990:CDS 35.0%
CAAATTCCATTTGTGCATGT+TGG + chr3_2:64084652-64084671 None:intergenic 35.0%
TCCTCATGAGAAAGAGTTAA+AGG - chr3_2:64084795-64084814 Msa0416990:CDS 35.0%
AGGCTTCTTTCTTTAATTGG+TGG - chr3_2:64084815-64084834 Msa0416990:intron 35.0%
GACAATAATAAACCAGCAGT+AGG + chr3_2:64084931-64084950 None:intergenic 35.0%
ACACGAATTATATCCTTAGC+AGG + chr3_2:64085014-64085033 None:intergenic 35.0%
GAAACTCATGTAGATCTGAA+GGG + chr3_2:64085082-64085101 None:intergenic 35.0%
TGAAACTCATGTAGATCTGA+AGG + chr3_2:64085083-64085102 None:intergenic 35.0%
ATCATGGGTATAGTCTTCTT+TGG + chr3_2:64083486-64083505 None:intergenic 35.0%
AAAGAAGACTATACCCATGA+TGG - chr3_2:64083485-64083504 Msa0416990:CDS 35.0%
GAAATCAACAGTTCCATCAT+GGG + chr3_2:64083501-64083520 None:intergenic 35.0%
! GTATGAAGCATTTGAAAGGA+TGG - chr3_2:64083748-64083767 Msa0416990:CDS 35.0%
CTTCATGAAGTTGTGTTGTA+AGG + chr3_2:64083808-64083827 None:intergenic 35.0%
AGGAATGTTAATACATGGTC+AGG - chr3_2:64083845-64083864 Msa0416990:CDS 35.0%
GGAATGTTAATACATGGTCA+GGG - chr3_2:64083846-64083865 Msa0416990:CDS 35.0%
GTTTGGATAACACCAATTCT+TGG - chr3_2:64083872-64083891 Msa0416990:CDS 35.0%
TTACATTGCAGATTCTTACC+TGG - chr3_2:64083898-64083917 Msa0416990:CDS 35.0%
TACATTGCAGATTCTTACCT+GGG - chr3_2:64083899-64083918 Msa0416990:CDS 35.0%
GACATAAATGAGAGATGAGA+GGG + chr3_2:64083942-64083961 None:intergenic 35.0%
AGACATAAATGAGAGATGAG+AGG + chr3_2:64083943-64083962 None:intergenic 35.0%
CTCATCTCTCATTTATGTCT+TGG - chr3_2:64083943-64083962 Msa0416990:CDS 35.0%
CATGGCCTTTAATTGTCTTA+TGG + chr3_2:64084041-64084060 None:intergenic 35.0%
TTAACGCTGCTATGTTCTTA+AGG + chr3_2:64084113-64084132 None:intergenic 35.0%
CAAGACGAGTAAAACCATAA+TGG + chr3_2:64084160-64084179 None:intergenic 35.0%
!! CTTTGGTTACCTCATTTTTG+TGG - chr3_2:64084479-64084498 Msa0416990:intron 35.0%
TTAATTCCTCTACACATCAC+AGG - chr3_2:64084582-64084601 Msa0416990:intron 35.0%
TAATTCCTCTACACATCACA+GGG - chr3_2:64084583-64084602 Msa0416990:intron 35.0%
TTGAAACCAACATGCACAAA+TGG - chr3_2:64084643-64084662 Msa0416990:CDS 35.0%
CAAATTCCATTTGTGCATGT+TGG + chr3_2:64084652-64084671 None:intergenic 35.0%
TCCTCATGAGAAAGAGTTAA+AGG - chr3_2:64084795-64084814 Msa0416990:CDS 35.0%
AGGCTTCTTTCTTTAATTGG+TGG - chr3_2:64084815-64084834 Msa0416990:intron 35.0%
GACAATAATAAACCAGCAGT+AGG + chr3_2:64084931-64084950 None:intergenic 35.0%
ACACGAATTATATCCTTAGC+AGG + chr3_2:64085014-64085033 None:intergenic 35.0%
GAAACTCATGTAGATCTGAA+GGG + chr3_2:64085082-64085101 None:intergenic 35.0%
TGAAACTCATGTAGATCTGA+AGG + chr3_2:64085083-64085102 None:intergenic 35.0%
GGAAATCAACAGTTCCATCA+TGG + chr3_2:64083502-64083521 None:intergenic 40.0%
!! GATGGAACTGTTGATTTCCA+CGG - chr3_2:64083503-64083522 Msa0416990:CDS 40.0%
TTCCATCCAAAACTGGGAAA+TGG - chr3_2:64083537-64083556 Msa0416990:CDS 40.0%
!!! TTCCATTTCCCAGTTTTGGA+TGG + chr3_2:64083542-64083561 None:intergenic 40.0%
ATCCAAAACTGGGAAATGGA+AGG - chr3_2:64083541-64083560 Msa0416990:CDS 40.0%
! AAGGCTTGTGCTTTTCTTGT+TGG - chr3_2:64083560-64083579 Msa0416990:CDS 40.0%
! CAGGGTATGAAGCATTTGAA+AGG - chr3_2:64083744-64083763 Msa0416990:CDS 40.0%
TTTGAAAGGATGGCCTTCTA+TGG - chr3_2:64083758-64083777 Msa0416990:CDS 40.0%
GTTTGATGCAACTCCATAGA+AGG + chr3_2:64083774-64083793 None:intergenic 40.0%
CTATGGAGTTGCATCAAACT+TGG - chr3_2:64083775-64083794 Msa0416990:CDS 40.0%
GCAATGTAAGCACCAAGAAT+TGG + chr3_2:64083887-64083906 None:intergenic 40.0%
TGTCTTATGGTCCAAACAAG+TGG + chr3_2:64084028-64084047 None:intergenic 40.0%
GTAGAGTTTGCGTTCCATTA+TGG - chr3_2:64084143-64084162 Msa0416990:intron 40.0%
GTGGACAAATTAGCTCCAAT+TGG + chr3_2:64084303-64084322 None:intergenic 40.0%
TTTGTCCCACCTTGAATTGA+TGG - chr3_2:64084426-64084445 Msa0416990:intron 40.0%
ATCACTGTGCCACAAAAATG+AGG + chr3_2:64084491-64084510 None:intergenic 40.0%
CACAAATGGAATTTGCAGCA+AGG - chr3_2:64084657-64084676 Msa0416990:CDS 40.0%
CTACACAGCACTTTACACAA+TGG - chr3_2:64084705-64084724 Msa0416990:CDS 40.0%
GCACTTTACACAATGGCAAT+TGG - chr3_2:64084712-64084731 Msa0416990:CDS 40.0%
GCCTTTAACTCTTTCTCATG+AGG + chr3_2:64084799-64084818 None:intergenic 40.0%
GGTGCCTTAATTGCAACTTT+AGG - chr3_2:64084856-64084875 Msa0416990:intron 40.0%
GACATCTAAAAGTCCTGCTA+AGG - chr3_2:64084998-64085017 Msa0416990:CDS 40.0%
TGTAGATCTGAAGGGTTACT+AGG + chr3_2:64085074-64085093 None:intergenic 40.0%
TCTATCACACTCCAACTTTG+AGG - chr3_2:64085138-64085157 Msa0416990:five_prime_UTR 40.0%
GGAAATCAACAGTTCCATCA+TGG + chr3_2:64083502-64083521 None:intergenic 40.0%
!! GATGGAACTGTTGATTTCCA+CGG - chr3_2:64083503-64083522 Msa0416990:CDS 40.0%
TTCCATCCAAAACTGGGAAA+TGG - chr3_2:64083537-64083556 Msa0416990:CDS 40.0%
!!! TTCCATTTCCCAGTTTTGGA+TGG + chr3_2:64083542-64083561 None:intergenic 40.0%
ATCCAAAACTGGGAAATGGA+AGG - chr3_2:64083541-64083560 Msa0416990:CDS 40.0%
! AAGGCTTGTGCTTTTCTTGT+TGG - chr3_2:64083560-64083579 Msa0416990:CDS 40.0%
! CAGGGTATGAAGCATTTGAA+AGG - chr3_2:64083744-64083763 Msa0416990:CDS 40.0%
TTTGAAAGGATGGCCTTCTA+TGG - chr3_2:64083758-64083777 Msa0416990:CDS 40.0%
GTTTGATGCAACTCCATAGA+AGG + chr3_2:64083774-64083793 None:intergenic 40.0%
CTATGGAGTTGCATCAAACT+TGG - chr3_2:64083775-64083794 Msa0416990:CDS 40.0%
GCAATGTAAGCACCAAGAAT+TGG + chr3_2:64083887-64083906 None:intergenic 40.0%
TGTCTTATGGTCCAAACAAG+TGG + chr3_2:64084028-64084047 None:intergenic 40.0%
GTAGAGTTTGCGTTCCATTA+TGG - chr3_2:64084143-64084162 Msa0416990:intron 40.0%
GTGGACAAATTAGCTCCAAT+TGG + chr3_2:64084303-64084322 None:intergenic 40.0%
TTTGTCCCACCTTGAATTGA+TGG - chr3_2:64084426-64084445 Msa0416990:intron 40.0%
ATCACTGTGCCACAAAAATG+AGG + chr3_2:64084491-64084510 None:intergenic 40.0%
CACAAATGGAATTTGCAGCA+AGG - chr3_2:64084657-64084676 Msa0416990:CDS 40.0%
CTACACAGCACTTTACACAA+TGG - chr3_2:64084705-64084724 Msa0416990:CDS 40.0%
GCACTTTACACAATGGCAAT+TGG - chr3_2:64084712-64084731 Msa0416990:CDS 40.0%
GCCTTTAACTCTTTCTCATG+AGG + chr3_2:64084799-64084818 None:intergenic 40.0%
GGTGCCTTAATTGCAACTTT+AGG - chr3_2:64084856-64084875 Msa0416990:intron 40.0%
GACATCTAAAAGTCCTGCTA+AGG - chr3_2:64084998-64085017 Msa0416990:CDS 40.0%
TGTAGATCTGAAGGGTTACT+AGG + chr3_2:64085074-64085093 None:intergenic 40.0%
TCTATCACACTCCAACTTTG+AGG - chr3_2:64085138-64085157 Msa0416990:five_prime_UTR 40.0%
CTGCTGTTCCATCCAAAACT+GGG - chr3_2:64083531-64083550 Msa0416990:CDS 45.0%
! AGCCTTCCATTTCCCAGTTT+TGG + chr3_2:64083546-64083565 None:intergenic 45.0%
ATACATGGTCAGGGTCTGTT+TGG - chr3_2:64083855-64083874 Msa0416990:CDS 45.0%
TTGTCCACAAATTGCACTCG+TGG - chr3_2:64084315-64084334 Msa0416990:intron 45.0%
TGTCCACAAATTGCACTCGT+GGG - chr3_2:64084316-64084335 Msa0416990:intron 45.0%
TATCCCACGAGTGCAATTTG+TGG + chr3_2:64084322-64084341 None:intergenic 45.0%
TCATTCCCTGTGATGTGTAG+AGG + chr3_2:64084591-64084610 None:intergenic 45.0%
TACACAATGGCAATTGGTGC+AGG - chr3_2:64084718-64084737 Msa0416990:CDS 45.0%
! GAGAATTTAGGATGGGGACT+TGG - chr3_2:64084895-64084914 Msa0416990:intron 45.0%
TTAGGATGGGGACTTGGATA+TGG - chr3_2:64084901-64084920 Msa0416990:intron 45.0%
GGATATGGTATTCCTACTGC+TGG - chr3_2:64084916-64084935 Msa0416990:intron 45.0%
CTGCTGTTCCATCCAAAACT+GGG - chr3_2:64083531-64083550 Msa0416990:CDS 45.0%
! AGCCTTCCATTTCCCAGTTT+TGG + chr3_2:64083546-64083565 None:intergenic 45.0%
ATACATGGTCAGGGTCTGTT+TGG - chr3_2:64083855-64083874 Msa0416990:CDS 45.0%
TTGTCCACAAATTGCACTCG+TGG - chr3_2:64084315-64084334 Msa0416990:intron 45.0%
TGTCCACAAATTGCACTCGT+GGG - chr3_2:64084316-64084335 Msa0416990:intron 45.0%
TATCCCACGAGTGCAATTTG+TGG + chr3_2:64084322-64084341 None:intergenic 45.0%
TCATTCCCTGTGATGTGTAG+AGG + chr3_2:64084591-64084610 None:intergenic 45.0%
TACACAATGGCAATTGGTGC+AGG - chr3_2:64084718-64084737 Msa0416990:CDS 45.0%
! GAGAATTTAGGATGGGGACT+TGG - chr3_2:64084895-64084914 Msa0416990:intron 45.0%
TTAGGATGGGGACTTGGATA+TGG - chr3_2:64084901-64084920 Msa0416990:intron 45.0%
GGATATGGTATTCCTACTGC+TGG - chr3_2:64084916-64084935 Msa0416990:intron 45.0%
!! TTAATAATTGTTTATATTAT+GGG - chr3_2:64083672-64083691 Msa0416990:CDS 5.0%
!! TTAATAATTGTTTATATTAT+GGG - chr3_2:64083672-64083691 Msa0416990:CDS 5.0%
!!! CCAGTTTTGGATGGAACAGC+AGG + chr3_2:64083533-64083552 None:intergenic 50.0%
CCTGCTGTTCCATCCAAAAC+TGG - chr3_2:64083530-64083549 Msa0416990:CDS 50.0%
ATTCTTACCTGGGTCGCTTC+TGG - chr3_2:64083909-64083928 Msa0416990:CDS 50.0%
ACAATGGCAATTGGTGCAGG+TGG - chr3_2:64084721-64084740 Msa0416990:CDS 50.0%
!!! CCAGTTTTGGATGGAACAGC+AGG + chr3_2:64083533-64083552 None:intergenic 50.0%
CCTGCTGTTCCATCCAAAAC+TGG - chr3_2:64083530-64083549 Msa0416990:CDS 50.0%
ATTCTTACCTGGGTCGCTTC+TGG - chr3_2:64083909-64083928 Msa0416990:CDS 50.0%
ACAATGGCAATTGGTGCAGG+TGG - chr3_2:64084721-64084740 Msa0416990:CDS 50.0%
ATGGAACAGCAGGTTTGCCG+TGG + chr3_2:64083523-64083542 None:intergenic 55.0%
TGAAAGTCCAGAAGCGACCC+AGG + chr3_2:64083919-64083938 None:intergenic 55.0%
ATGGAACAGCAGGTTTGCCG+TGG + chr3_2:64083523-64083542 None:intergenic 55.0%
TGAAAGTCCAGAAGCGACCC+AGG + chr3_2:64083919-64083938 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64083404 64085163 64083404 ID=Msa0416990;Name=Msa0416990
chr3_2 mRNA 64083404 64085163 64083404 ID=Msa0416990-mRNA-1;Parent=Msa0416990;Name=Msa0416990-mRNA-1;_AED=0.20;_eAED=0.20;_QI=72|0.5|0.4|1|0.75|0.6|5|0|281
chr3_2 exon 64083404 64083597 64083404 ID=Msa0416990-mRNA-1:exon:14086;Parent=Msa0416990-mRNA-1
chr3_2 exon 64083630 64083827 64083630 ID=Msa0416990-mRNA-1:exon:14085;Parent=Msa0416990-mRNA-1
chr3_2 exon 64083834 64083963 64083834 ID=Msa0416990-mRNA-1:exon:14084;Parent=Msa0416990-mRNA-1
chr3_2 exon 64084603 64084820 64084603 ID=Msa0416990-mRNA-1:exon:14083;Parent=Msa0416990-mRNA-1
chr3_2 exon 64084986 64085163 64084986 ID=Msa0416990-mRNA-1:exon:14082;Parent=Msa0416990-mRNA-1
chr3_2 five_prime_UTR 64085092 64085163 64085092 ID=Msa0416990-mRNA-1:five_prime_utr;Parent=Msa0416990-mRNA-1
chr3_2 CDS 64084986 64085091 64084986 ID=Msa0416990-mRNA-1:cds;Parent=Msa0416990-mRNA-1
chr3_2 CDS 64084603 64084820 64084603 ID=Msa0416990-mRNA-1:cds;Parent=Msa0416990-mRNA-1
chr3_2 CDS 64083834 64083963 64083834 ID=Msa0416990-mRNA-1:cds;Parent=Msa0416990-mRNA-1
chr3_2 CDS 64083630 64083827 64083630 ID=Msa0416990-mRNA-1:cds;Parent=Msa0416990-mRNA-1
chr3_2 CDS 64083404 64083597 64083404 ID=Msa0416990-mRNA-1:cds;Parent=Msa0416990-mRNA-1
Gene Sequence

>Msa0416990

ATGGAAGCCAAAGAAGACTATACCCATGATGGAACTGTTGATTTCCACGGCAAACCTGCTGTTCCATCCAAAACTGGGAAATGGAAGGCTTGTGCTTTTCTTGTTGGGTATGAAGCATTTGAAAGGATGGCCTTCTATGGAGTTGCATCAAACTTGGTGAATTACCTTACAACACAACTTCATGAAGATACTGTTTCATCAGTTAGGAATGTTAATACATGGTCAGGGTCTGTTTGGATAACACCAATTCTTGGTGCTTACATTGCAGATTCTTACCTGGGTCGCTTCTGGACTTTCACCCTCTCATCTCTCATTTATGTCTTGGGAATGACACTTCTTACTATAGCTGTATCACTCAAGAGCTTGAAACCAACATGCACAAATGGAATTTGCAGCAAGGCTTCAACATCACAAATTACATTTTTCTACACAGCACTTTACACAATGGCAATTGGTGGAACAAAACCAAATATCTCAACTTTTGTTGCTGACCAATTTGATGATTTTAATCCTCATGAGAAAGAGTTAAAGGCTTCTTTCTTTAATTGGTGGATGTTTACCTCATTTTTAGGTGCCTTAATTGCAACTTTAGGACTTGTATATATTCAAGAGAATTTAGGATGGGGACTTGGATATGGTATTCCTACTGCTGGGACACCAATTTATCGACACAAAGTTAGGACATCTAAAAGTCCTGCTAAGGATATAATTCGTGTCTTTATTGTTGCCTTCAAGAATAGGAAACTTCAACTTCCTAGTAACCCTTCAGATCTACATGAGTTTCAAATGGAACATTGTGTTATTAGGGGAAAAAGGCAAGTCTATCACACTCCAACTTTGAGGTAA

Protein sequence

>Msa0416990

MEAKEDYTHDGTVDFHGKPAVPSKTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTTQLHEDTVSSVRNVNTWSGSVWITPILGAYIADSYLGRFWTFTLSSLIYVLGMTLLTIAVSLKSLKPTCTNGICSKASTSQITFFYTALYTMAIGGTKPNISTFVADQFDDFNPHEKELKASFFNWWMFTSFLGALIATLGLVYIQENLGWGLGYGIPTAGTPIYRHKVRTSKSPAKDIIRVFIVAFKNRKLQLPSNPSDLHEFQMEHCVIRGKRQVYHTPTLR*