AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1179410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179410 MtrunA17_Chr8g0342441 100.000 203 0 0 4 206 139 341 1.15e-151 424
Msa1179410 MtrunA17_Chr2g0285411 38.914 221 116 6 4 206 101 320 2.01e-41 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179410 AT3G13800.3 81.373 204 37 1 4 206 76 279 6.94e-122 346
Msa1179410 AT3G13800.2 81.373 204 37 1 4 206 76 279 6.94e-122 346
Msa1179410 AT3G13800.1 81.373 204 37 1 4 206 158 361 1.09e-121 349
Msa1179410 AT3G13800.4 81.373 204 37 1 4 206 158 361 1.09e-121 349
Msa1179410 AT1G30300.1 38.009 221 118 7 4 206 105 324 8.69e-39 136
Msa1179410 AT1G30300.3 38.009 221 118 7 4 206 105 324 8.69e-39 136
Msa1179410 AT1G30300.2 38.009 221 118 7 4 206 105 324 8.69e-39 136
Msa1179410 AT1G30300.4 38.009 221 118 7 4 206 105 324 8.69e-39 136
Msa1179410 AT4G03610.4 38.667 225 112 7 4 206 98 318 2.66e-37 132
Msa1179410 AT4G03610.1 38.462 221 110 7 8 206 87 303 3.61e-36 129
Msa1179410 AT4G03610.2 38.503 187 89 7 4 168 98 280 4.82e-27 104
Msa1179410 AT4G03610.3 39.103 156 71 6 4 139 98 249 2.08e-21 89.0

Find 47 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCTTCAGCTACACATTT+TGG 0.129908 8_1:-12814974 Msa1179410:CDS
TGACTACCTTACAAAATTAT+TGG 0.195753 8_1:-12814374 Msa1179410:CDS
CGGTCCCTTGGTTTCCGTTT+TGG 0.200037 8_1:-12815321 Msa1179410:CDS
TCACGCTTGGCTACATAAAT+TGG 0.214243 8_1:+12816985 None:intergenic
TGATACTATACATATGTTAT+AGG 0.281663 8_1:-12814089 Msa1179410:three_prime_UTR
TTGTATCAACTAAATAATAA+TGG 0.283710 8_1:+12815819 None:intergenic
AAGAATGGTGATAGGGAAAA+AGG 0.301564 8_1:+12814140 None:intergenic
ACTACAGTTTCACTCATAAA+AGG 0.301817 8_1:-12814290 Msa1179410:three_prime_UTR
AAGAAATAAAGAATGGTGAT+AGG 0.348889 8_1:+12814132 None:intergenic
CATTCTCATGCTGATGCAAT+TGG 0.382278 8_1:-12817189 Msa1179410:CDS
AAAAGTGGATAAGTTTCTTC+AGG 0.386969 8_1:+12815162 None:intergenic
TGTATCAACTAAATAATAAT+GGG 0.405339 8_1:+12815820 None:intergenic
TTGGTAATATATGTTACATA+AGG 0.409235 8_1:-12815302 Msa1179410:intron
TGTAGCCAAGCGTGACTTTG+AGG 0.419835 8_1:-12816977 Msa1179410:intron
GGACTGTGAACTTCTAATAA+TGG 0.420963 8_1:-12815136 Msa1179410:intron
TGTGGCATGGTCAAGGTTAT+CGG 0.423742 8_1:-12815341 Msa1179410:CDS
GATGCGCAACTGAGCTATGA+TGG 0.461379 8_1:-12814337 Msa1179410:CDS
GGTCAAGGTTATCGGTCCCT+TGG 0.481205 8_1:-12815333 Msa1179410:CDS
AGAAATAAAGAATGGTGATA+GGG 0.486767 8_1:+12814133 None:intergenic
TACAAAATTATTGGAGTCTG+AGG 0.491029 8_1:-12814365 Msa1179410:CDS
GGTAAAGAAGAAATAAAGAA+TGG 0.495634 8_1:+12814125 None:intergenic
AGTTCACAGTCCTTCAAAAG+TGG 0.504029 8_1:+12815147 None:intergenic
TGACCATGCCACACTGGTAG+TGG 0.508732 8_1:+12815351 None:intergenic
TGTAACATATATTACCAAAA+CGG 0.516666 8_1:+12815307 None:intergenic
TCTCATGCTGATGCAATTGG+AGG 0.529678 8_1:-12817186 Msa1179410:intron
ATGTGTAGCTGAAGAGCGAT+CGG 0.537686 8_1:+12814979 None:intergenic
CATAGCTCAGTTGCGCATCA+AGG 0.543483 8_1:+12814341 None:intergenic
TTGAAATGAATGTCATTACC+AGG 0.551112 8_1:-12814207 Msa1179410:three_prime_UTR
GTCTTGATGATCTTAGAGAC+TGG 0.552009 8_1:-12817032 Msa1179410:CDS
GAGGACCTCAAAGTCACGCT+TGG 0.556366 8_1:+12816972 None:intergenic
CTTGGCTACATAAATTGGAA+TGG 0.558295 8_1:+12816990 None:intergenic
AATGCTGAGACCGCAGCACC+AGG 0.563087 8_1:+12815785 None:intergenic
TGTGTAGCTGAAGAGCGATC+GGG 0.569534 8_1:+12814980 None:intergenic
TGAAGGTATGATGCATCTGA+TGG 0.575148 8_1:-12814413 Msa1179410:intron
GCTACATAAATTGGAATGGA+GGG 0.577865 8_1:+12816994 None:intergenic
CTACCAGTGTGGCATGGTCA+AGG 0.589078 8_1:-12815348 Msa1179410:CDS
ATGCGCAACTGAGCTATGAT+GGG 0.595409 8_1:-12814336 Msa1179410:CDS
TATTACCAAAACGGAAACCA+AGG 0.596749 8_1:+12815316 None:intergenic
GGCTACATAAATTGGAATGG+AGG 0.601861 8_1:+12816993 None:intergenic
ACAAAATTATTGGAGTCTGA+GGG 0.606652 8_1:-12814364 Msa1179410:CDS
TAGTATCATAGTGTTAAGAG+AGG 0.612714 8_1:+12814104 None:intergenic
TAACCTTGACCATGCCACAC+TGG 0.621640 8_1:+12815345 None:intergenic
TGTAATCATACCTGGTGCTG+CGG 0.622886 8_1:-12815795 Msa1179410:CDS
GATACAAGTGTAATCATACC+TGG 0.624797 8_1:-12815803 Msa1179410:CDS
ACTCCACTACCAGTGTGGCA+TGG 0.653555 8_1:-12815354 Msa1179410:CDS
ATTACCAAAACGGAAACCAA+GGG 0.656302 8_1:+12815317 None:intergenic
AGTTTACTCCACTACCAGTG+TGG 0.676456 8_1:-12815359 Msa1179410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! NNNNNNNNAGCATAATAATA+AGG + chr8_1:12814081-12814100 None:intergenic 10.0%
!!! TAATAAGGTAAATTCTAAAA+TGG + chr8_1:12814066-12814085 None:intergenic 15.0%
!!! TAGATTTTCTTTTCTTTTTA+TGG - chr8_1:12814351-12814370 Msa1179410:CDS 15.0%
!!! AGCATTGATTTTTTTTAATA+CGG + chr8_1:12816046-12816065 None:intergenic 15.0%
!!! ATACATTTAAGATAATTTTC+AGG - chr8_1:12816489-12816508 Msa1179410:intron 15.0%
!! TTCTCAAATATTATAACTTT+CGG - chr8_1:12816563-12816582 Msa1179410:intron 15.0%
!!! TTAAATCATTTTATACTTTC+AGG + chr8_1:12816889-12816908 None:intergenic 15.0%
!! TGTATCAACTAAATAATAAT+GGG + chr8_1:12817032-12817051 None:intergenic 15.0%
!! TTGTATCAACTAAATAATAA+TGG + chr8_1:12817033-12817052 None:intergenic 15.0%
!!! AATTTTTTAATGTGAAAATG+AGG + chr8_1:12817784-12817803 None:intergenic 15.0%
!! ACATTAAAAAATTAGAACTA+TGG - chr8_1:12817791-12817810 Msa1179410:intron 15.0%
!!! GTAATTATGGTTTTAAATAA+AGG + chr8_1:12818356-12818375 None:intergenic 15.0%
!! ATTGATGAAATATGTAATTA+TGG + chr8_1:12818369-12818388 None:intergenic 15.0%
!! AGAAAAGAAAATCTAACTTT+GGG + chr8_1:12814346-12814365 None:intergenic 20.0%
!! AAGAAAAGAAAATCTAACTT+TGG + chr8_1:12814347-12814366 None:intergenic 20.0%
!! AAATTAATAGATAGCAATTG+TGG - chr8_1:12814403-12814422 Msa1179410:CDS 20.0%
!! AATTTAGTGAAGATATTGTA+TGG - chr8_1:12814559-12814578 Msa1179410:intron 20.0%
!! AACAGAAAAAATAATTGAAC+AGG + chr8_1:12815106-12815125 None:intergenic 20.0%
!!! GTTTTTGATATTGTTATTTG+AGG - chr8_1:12815123-12815142 Msa1179410:intron 20.0%
!! TTTGTGCAAGTATTATAATT+GGG - chr8_1:12815372-12815391 Msa1179410:intron 20.0%
!! TTTATGTCAACATGTTTAAA+TGG - chr8_1:12816107-12816126 Msa1179410:intron 20.0%
!!! TATACATCTTTTAAATGTTG+AGG + chr8_1:12816242-12816261 None:intergenic 20.0%
!! TTTGTAGTTAAAAATTGAGA+AGG - chr8_1:12816268-12816287 Msa1179410:intron 20.0%
!! AAATTATAATACAGAACCTT+TGG + chr8_1:12816369-12816388 None:intergenic 20.0%
!! GAAAGTTATAATATTTGAGA+AGG + chr8_1:12816564-12816583 None:intergenic 20.0%
!! TCTCAAATATTATAACTTTC+GGG - chr8_1:12816564-12816583 Msa1179410:intron 20.0%
!!! ATAATAAGCTTGATTTTGTT+AGG - chr8_1:12816594-12816613 Msa1179410:intron 20.0%
!! CAATCAATTGATGTATTTAA+AGG - chr8_1:12817228-12817247 Msa1179410:intron 20.0%
!! TTAAAATGCAGTTATAAAAG+TGG + chr8_1:12817310-12817329 None:intergenic 20.0%
!! TCAGAAATTACGAATTTAAT+AGG + chr8_1:12817411-12817430 None:intergenic 20.0%
!! TGTAACATATATTACCAAAA+CGG + chr8_1:12817545-12817564 None:intergenic 20.0%
!!! TTGGTAATATATGTTACATA+AGG - chr8_1:12817547-12817566 Msa1179410:intron 20.0%
!!! ATATGTATTGACAAAAAATC+TGG + chr8_1:12817622-12817641 None:intergenic 20.0%
!! TAAAAATCAACAAATGTGAA+AGG + chr8_1:12817925-12817944 None:intergenic 20.0%
!!! ACATTTGTTGATTTTTATCT+TGG - chr8_1:12817928-12817947 Msa1179410:intron 20.0%
!! AGTTCATTGATCAAATATTT+AGG - chr8_1:12818113-12818132 Msa1179410:intron 20.0%
!! GTAGTAACTAAAAAAAATTG+TGG - chr8_1:12818168-12818187 Msa1179410:intron 20.0%
!!! TATGGTTTTAAATAAAGGTT+CGG + chr8_1:12818351-12818370 None:intergenic 20.0%
!! TGATACTATACATATGTTAT+AGG - chr8_1:12818760-12818779 Msa1179410:intron 20.0%
! ATATGTATTGCAATTATGCT+AGG - chr8_1:12814247-12814266 Msa1179410:three_prime_UTR 25.0%
! TGGACTGAAATCAAAATAAA+AGG + chr8_1:12814299-12814318 None:intergenic 25.0%
! TTATACAAGCAAAATATTCC+AGG + chr8_1:12814433-12814452 None:intergenic 25.0%
! TGCATTAGAAAAACTTTCAA+CGG - chr8_1:12814533-12814552 Msa1179410:intron 25.0%
! TATGAATTATTCGTTACTCT+AGG + chr8_1:12814643-12814662 None:intergenic 25.0%
! CGATTAATATATAGTGTGTT+AGG - chr8_1:12814883-12814902 Msa1179410:intron 25.0%
! AAATAGACATGTATACAGTA+TGG - chr8_1:12814906-12814925 Msa1179410:intron 25.0%
! AAACTGAGAAATTCAATTCA+AGG - chr8_1:12814946-12814965 Msa1179410:intron 25.0%
!!! CTATTTTCCATATTGCTTTT+CGG - chr8_1:12815155-12815174 Msa1179410:CDS 25.0%
! AGTACTCTACAACTTTAATA+AGG - chr8_1:12815181-12815200 Msa1179410:CDS 25.0%
! GTACTCTACAACTTTAATAA+GGG - chr8_1:12815182-12815201 Msa1179410:intron 25.0%
! CTTTGTGCAAGTATTATAAT+TGG - chr8_1:12815371-12815390 Msa1179410:intron 25.0%
! AATTGGGATTATCAAATATC+TGG - chr8_1:12815388-12815407 Msa1179410:intron 25.0%
!!! TTTTTGTCTCTTAAGTTGAT+AGG + chr8_1:12815428-12815447 None:intergenic 25.0%
! GTTAATACTTTCTAATACTC+TGG - chr8_1:12815694-12815713 Msa1179410:intron 25.0%
!! TTGAAAGCTTTAATTTCAGA+AGG + chr8_1:12815916-12815935 None:intergenic 25.0%
! ATATATATGTCTAAGAGACT+AGG - chr8_1:12815964-12815983 Msa1179410:intron 25.0%
! GCTATTATTAAGATCAAATG+TGG - chr8_1:12815994-12816013 Msa1179410:intron 25.0%
!! TTTTTAATACGGTGATATGT+GGG + chr8_1:12816035-12816054 None:intergenic 25.0%
!!! TTTTTTAATACGGTGATATG+TGG + chr8_1:12816036-12816055 None:intergenic 25.0%
! TTTGGATCAAGATATTATAC+AGG + chr8_1:12816351-12816370 None:intergenic 25.0%
! TGTATAATATCTTGATCCAA+AGG - chr8_1:12816350-12816369 Msa1179410:intron 25.0%
!! CTGTATTATAATTTGTGTGA+TGG - chr8_1:12816375-12816394 Msa1179410:intron 25.0%
!!! TATGATAGCTTTTGAAATTC+AGG - chr8_1:12816412-12816431 Msa1179410:intron 25.0%
!!! ATGATAGCTTTTGAAATTCA+GGG - chr8_1:12816413-12816432 Msa1179410:intron 25.0%
!!! TAGAAAAATGAAGTGTTTTC+AGG - chr8_1:12816528-12816547 Msa1179410:intron 25.0%
!!! AGAAAAATGAAGTGTTTTCA+GGG - chr8_1:12816529-12816548 Msa1179410:intron 25.0%
! ACACTTTATCTACTCAATAA+GGG + chr8_1:12816623-12816642 None:intergenic 25.0%
! TAAACGTCAAGAAATCAATT+AGG + chr8_1:12816788-12816807 None:intergenic 25.0%
! ATACTATAATGAAATGATCG+AGG - chr8_1:12817155-12817174 Msa1179410:intron 25.0%
! TACTATAATGAAATGATCGA+GGG - chr8_1:12817156-12817175 Msa1179410:intron 25.0%
!!! CAGTGTAAATTAGTTTTACA+CGG + chr8_1:12817378-12817397 None:intergenic 25.0%
! AGTTTATGGAAAGATAGATA+AGG + chr8_1:12817759-12817778 None:intergenic 25.0%
!! ATAATGTGTATACTTTTGAC+AGG - chr8_1:12817835-12817854 Msa1179410:intron 25.0%
!! CGTTGCAATATTTTATATTG+TGG - chr8_1:12818231-12818250 Msa1179410:intron 25.0%
! TGACTACCTTACAAAATTAT+TGG - chr8_1:12818475-12818494 Msa1179410:intron 25.0%
! AGAAATAAAGAATGGTGATA+GGG + chr8_1:12818719-12818738 None:intergenic 25.0%
! AAGAAATAAAGAATGGTGAT+AGG + chr8_1:12818720-12818739 None:intergenic 25.0%
! GGTAAAGAAGAAATAAAGAA+TGG + chr8_1:12818727-12818746 None:intergenic 25.0%
CACAATATTCTTATAGATGC+TGG - chr8_1:12814197-12814216 Msa1179410:three_prime_UTR 30.0%
ATTATGCTAGGTTACGAATT+AGG - chr8_1:12814259-12814278 Msa1179410:three_prime_UTR 30.0%
ACATCAAGAAATCACAAACT+TGG + chr8_1:12814319-12814338 None:intergenic 30.0%
! GTTGATTCATTTACAAGTGA+AGG - chr8_1:12814481-12814500 Msa1179410:intron 30.0%
GTATGGATGAGTATAAGAAT+AGG - chr8_1:12814576-12814595 Msa1179410:intron 30.0%
TGATATATCATATCCTGACT+AGG + chr8_1:12814605-12814624 None:intergenic 30.0%
TAGTCAGGATATGATATATC+AGG - chr8_1:12814604-12814623 Msa1179410:intron 30.0%
AGTCAGGATATGATATATCA+GGG - chr8_1:12814605-12814624 Msa1179410:intron 30.0%
TTTCCTGAAATACAAGAACA+GGG + chr8_1:12814702-12814721 None:intergenic 30.0%
ATTTCCTGAAATACAAGAAC+AGG + chr8_1:12814703-12814722 None:intergenic 30.0%
!!! AAGCGAGCTTTATTTTGTAA+CGG + chr8_1:12814843-12814862 None:intergenic 30.0%
AATCGAGTTATAGTCAAGAT+AGG + chr8_1:12814868-12814887 None:intergenic 30.0%
!!! ATTTTTGTTTTCCTCGAAAC+TGG + chr8_1:12814972-12814991 None:intergenic 30.0%
CGAAAAGCAATATGGAAAAT+AGG + chr8_1:12815157-12815176 None:intergenic 30.0%
! TACTTTTCCGAAAAGCAATA+TGG + chr8_1:12815165-12815184 None:intergenic 30.0%
CTACAACTTTAATAAGGGTT+AGG - chr8_1:12815187-12815206 Msa1179410:intron 30.0%
GGTTCATATAAAGTTGTAGT+GGG - chr8_1:12815309-12815328 Msa1179410:CDS 30.0%
TATATATAGACAACAAGCAG+AGG + chr8_1:12815951-12815970 None:intergenic 30.0%
ATCAAATGTGGAAACTGTAA+GGG - chr8_1:12816006-12816025 Msa1179410:intron 30.0%
CACACTTTATCTACTCAATA+AGG + chr8_1:12816624-12816643 None:intergenic 30.0%
AAGTGTGATATTAAGCAATG+AGG - chr8_1:12816637-12816656 Msa1179410:intron 30.0%
AAGAGACAAATCCAAAAGAT+TGG + chr8_1:12816680-12816699 None:intergenic 30.0%
TAACAAATGATTCATGAGTC+CGG + chr8_1:12816927-12816946 None:intergenic 30.0%
!!! GAAGAACCTTTTTTTGTACA+CGG - chr8_1:12817106-12817125 Msa1179410:intron 30.0%
TTCAATCCGTGTACAAAAAA+AGG + chr8_1:12817115-12817134 None:intergenic 30.0%
!!! TTTTTTTGTACACGGATTGA+AGG - chr8_1:12817114-12817133 Msa1179410:intron 30.0%
AAAAAATGAAACACTCCCAT+TGG - chr8_1:12817348-12817367 Msa1179410:intron 30.0%
AAAAGTGGATAAGTTTCTTC+AGG + chr8_1:12817690-12817709 None:intergenic 30.0%
!! AGAAACTTATCCACTTTTGA+AGG - chr8_1:12817692-12817711 Msa1179410:intron 30.0%
TATGGAAAGATAGATAAGGT+AGG + chr8_1:12817755-12817774 None:intergenic 30.0%
TATGGCATAGTATTTCTCTT+TGG - chr8_1:12817809-12817828 Msa1179410:intron 30.0%
! TTATTCTGATCTTCCTTTTC+AGG - chr8_1:12817960-12817979 Msa1179410:intron 30.0%
! AATTTTTCTCACTTCCTCTA+AGG + chr8_1:12817986-12818005 None:intergenic 30.0%
TGAGAAAAATTCAACCCAAA+AGG - chr8_1:12817995-12818014 Msa1179410:intron 30.0%
GAATATCTCCTAAAGTTCAT+AGG - chr8_1:12818146-12818165 Msa1179410:intron 30.0%
AGTTACTACCTATGAACTTT+AGG + chr8_1:12818157-12818176 None:intergenic 30.0%
! AATTTTTGATGTCTCGTTGT+TGG - chr8_1:12818408-12818427 Msa1179410:intron 30.0%
! CAGACTCCAATAATTTTGTA+AGG + chr8_1:12818484-12818503 None:intergenic 30.0%
TACAAAATTATTGGAGTCTG+AGG - chr8_1:12818484-12818503 Msa1179410:intron 30.0%
ACAAAATTATTGGAGTCTGA+GGG - chr8_1:12818485-12818504 Msa1179410:intron 30.0%
ACTACAGTTTCACTCATAAA+AGG - chr8_1:12818559-12818578 Msa1179410:intron 30.0%
TTGAAATGAATGTCATTACC+AGG - chr8_1:12818642-12818661 Msa1179410:intron 30.0%
!!! TGTCATTACCAGGTTTTTTA+TGG - chr8_1:12818652-12818671 Msa1179410:intron 30.0%
TGTACATACCATAAAAAACC+TGG + chr8_1:12818663-12818682 None:intergenic 30.0%
! TTATGGTATGTACATTTTGC+AGG - chr8_1:12818669-12818688 Msa1179410:intron 30.0%
TAGTATCATAGTGTTAAGAG+AGG + chr8_1:12818748-12818767 None:intergenic 30.0%
TGGACTCATGAAAACTCTAA+TGG - chr8_1:12814371-12814390 Msa1179410:CDS 35.0%
CAGAAAAAGAGAGAAAACCA+GGG - chr8_1:12814664-12814683 Msa1179410:intron 35.0%
! GATACACATTGCATTGACAT+TGG - chr8_1:12814731-12814750 Msa1179410:intron 35.0%
! ATTGGTGTTTATGCAAAGAG+TGG - chr8_1:12814749-12814768 Msa1179410:intron 35.0%
!!! AGCTTTATTTTGTAACGGAC+TGG + chr8_1:12814838-12814857 None:intergenic 35.0%
AGGTAAACTAACCCAAATTC+GGG + chr8_1:12815086-12815105 None:intergenic 35.0%
CAGGTAAACTAACCCAAATT+CGG + chr8_1:12815087-12815106 None:intergenic 35.0%
GTAGAATGGAATATTTGAGC+AGG - chr8_1:12815218-12815237 Msa1179410:intron 35.0%
! GCAGGTTATCTATTCTGTTT+TGG + chr8_1:12815249-12815268 None:intergenic 35.0%
CTTTATATGAACCGCTCTAA+TGG + chr8_1:12815302-12815321 None:intergenic 35.0%
CGGTTCATATAAAGTTGTAG+TGG - chr8_1:12815308-12815327 Msa1179410:CDS 35.0%
CAAGCTTAACTCATACACTA+TGG + chr8_1:12815348-12815367 None:intergenic 35.0%
TAGTGTATGAGTTAAGCTTG+TGG - chr8_1:12815348-12815367 Msa1179410:CDS 35.0%
! TGACTAGTTGTATTTCTGTC+AGG - chr8_1:12815607-12815626 Msa1179410:intron 35.0%
GCTACATAAATTGGAATGGA+GGG + chr8_1:12815858-12815877 None:intergenic 35.0%
CTTGGCTACATAAATTGGAA+TGG + chr8_1:12815862-12815881 None:intergenic 35.0%
GATCAAATGTGGAAACTGTA+AGG - chr8_1:12816005-12816024 Msa1179410:intron 35.0%
!!! ATAGCTTTTGAAATTCAGGG+AGG - chr8_1:12816416-12816435 Msa1179410:intron 35.0%
!!! TAGCTTTTGAAATTCAGGGA+GGG - chr8_1:12816417-12816436 Msa1179410:intron 35.0%
AGCATAACTGTAATGCAAGA+TGG + chr8_1:12816450-12816469 None:intergenic 35.0%
! ATCCAAAAGATTGGTCCATT+AGG + chr8_1:12816671-12816690 None:intergenic 35.0%
ACGTCAAGAAATCAATTAGG+CGG + chr8_1:12816785-12816804 None:intergenic 35.0%
AACAGGAAATCCAAATCCAT+GGG + chr8_1:12816846-12816865 None:intergenic 35.0%
TAACAGGAAATCCAAATCCA+TGG + chr8_1:12816847-12816866 None:intergenic 35.0%
TTAAAGCTTGTGAAGATCAC+CGG - chr8_1:12816905-12816924 Msa1179410:intron 35.0%
TGTTCATTACTGAAATGTGC+AGG - chr8_1:12816994-12817013 Msa1179410:CDS 35.0%
GATACAAGTGTAATCATACC+TGG - chr8_1:12817046-12817065 Msa1179410:intron 35.0%
!!! TGGGAGTGTTTCATTTTTTC+AGG + chr8_1:12817347-12817366 None:intergenic 35.0%
! GTTTTACACGGATTTCCAAT+GGG + chr8_1:12817366-12817385 None:intergenic 35.0%
! AGTTTTACACGGATTTCCAA+TGG + chr8_1:12817367-12817386 None:intergenic 35.0%
TGACTGAAATTGTTGTGCAT+GGG - chr8_1:12817428-12817447 Msa1179410:intron 35.0%
ATTACCAAAACGGAAACCAA+GGG + chr8_1:12817535-12817554 None:intergenic 35.0%
TATTACCAAAACGGAAACCA+AGG + chr8_1:12817536-12817555 None:intergenic 35.0%
GGACTGTGAACTTCTAATAA+TGG - chr8_1:12817713-12817732 Msa1179410:intron 35.0%
AAAGATAGATAAGGTAGGAG+GGG + chr8_1:12817750-12817769 None:intergenic 35.0%
GAAAGATAGATAAGGTAGGA+GGG + chr8_1:12817751-12817770 None:intergenic 35.0%
!! GTGAAAATGAGGCTAGTTTA+TGG + chr8_1:12817773-12817792 None:intergenic 35.0%
! TACACATTTTGGACTTCCAA+GGG - chr8_1:12817886-12817905 Msa1179410:intron 35.0%
!!! CCAGTAAAAAGTGTCCTTTT+GGG + chr8_1:12818012-12818031 None:intergenic 35.0%
!!! ACCAGTAAAAAGTGTCCTTT+TGG + chr8_1:12818013-12818032 None:intergenic 35.0%
CTGTTGCACAAAGAAAATCA+AGG + chr8_1:12818085-12818104 None:intergenic 35.0%
TTTCATGTAAGTGAACCACA+AGG + chr8_1:12818301-12818320 None:intergenic 35.0%
AAGAATGGTGATAGGGAAAA+AGG + chr8_1:12818712-12818731 None:intergenic 35.0%
TAAGAATAGGTTGCCTAGTC+AGG - chr8_1:12814589-12814608 Msa1179410:intron 40.0%
GCAGAAAAAGAGAGAAAACC+AGG - chr8_1:12814663-12814682 Msa1179410:intron 40.0%
TCTCCCTGTTCTTGTATTTC+AGG - chr8_1:12814696-12814715 Msa1179410:intron 40.0%
! CAGTTAGTTTACTGCACAGT+TGG - chr8_1:12814781-12814800 Msa1179410:intron 40.0%
AGTTTACTGCACAGTTGGTT+AGG - chr8_1:12814786-12814805 Msa1179410:intron 40.0%
CCTCACGTGTTTGCTTAATT+GGG - chr8_1:12815001-12815020 Msa1179410:intron 40.0%
! TTTTCTATCACAGTGCTCTC+CGG - chr8_1:12815054-12815073 Msa1179410:intron 40.0%
GTTAGGAACTGCATGTAGAA+TGG - chr8_1:12815204-12815223 Msa1179410:intron 40.0%
ATATCTCGCATTGTTTGTGC+AGG + chr8_1:12815267-12815286 None:intergenic 40.0%
TCATACATGCACCATTAGAG+CGG - chr8_1:12815288-12815307 Msa1179410:intron 40.0%
! TATAAAGTTGTAGTGGGACC+AGG - chr8_1:12815315-12815334 Msa1179410:CDS 40.0%
! ATAAAGTTGTAGTGGGACCA+GGG - chr8_1:12815316-12815335 Msa1179410:CDS 40.0%
TCACAAGAGTTGTACATCAG+TGG - chr8_1:12815450-12815469 Msa1179410:intron 40.0%
TACATCAGTGGCATTTCTTG+TGG - chr8_1:12815462-12815481 Msa1179410:intron 40.0%
CGATCTACATCATAAGCTCT+AGG + chr8_1:12815525-12815544 None:intergenic 40.0%
CATTCTCATGCTGATGCAAT+TGG - chr8_1:12815660-12815679 Msa1179410:intron 40.0%
! TCTAAGATCATCAAGACCTG+GGG + chr8_1:12815814-12815833 None:intergenic 40.0%
!! CTCTAAGATCATCAAGACCT+GGG + chr8_1:12815815-12815834 None:intergenic 40.0%
!! TCTCTAAGATCATCAAGACC+TGG + chr8_1:12815816-12815835 None:intergenic 40.0%
! GTCTTGATGATCTTAGAGAC+TGG - chr8_1:12815817-12815836 Msa1179410:CDS 40.0%
GGCTACATAAATTGGAATGG+AGG + chr8_1:12815859-12815878 None:intergenic 40.0%
TCACGCTTGGCTACATAAAT+TGG + chr8_1:12815867-12815886 None:intergenic 40.0%
ATTTCAGAAGGAAAGAGCAG+CGG + chr8_1:12815904-12815923 None:intergenic 40.0%
AATGGTGTTTATGCCTTCAC+TGG - chr8_1:12816125-12816144 Msa1179410:intron 40.0%
ATGGTGTTTATGCCTTCACT+GGG - chr8_1:12816126-12816145 Msa1179410:intron 40.0%
AGGCAGATGCAGATATTAAC+TGG + chr8_1:12816222-12816241 None:intergenic 40.0%
! AATGAGGCTTTTCCACCTAA+TGG - chr8_1:12816653-12816672 Msa1179410:intron 40.0%
! CAAAAGATTGGTCCATTAGG+TGG + chr8_1:12816668-12816687 None:intergenic 40.0%
!! CACCTAATGGACCAATCTTT+TGG - chr8_1:12816666-12816685 Msa1179410:intron 40.0%
TTTGGATTTGTCTCTTCTCG+TGG - chr8_1:12816684-12816703 Msa1179410:intron 40.0%
TTGGATTTGTCTCTTCTCGT+GGG - chr8_1:12816685-12816704 Msa1179410:intron 40.0%
TGGGCTTAAATCCTAACGAT+TGG - chr8_1:12816704-12816723 Msa1179410:intron 40.0%
GAAGAAGTTCACCAATCGTT+AGG + chr8_1:12816718-12816737 None:intergenic 40.0%
GGGTTGTAAGTGTCTACTAT+AGG + chr8_1:12816740-12816759 None:intergenic 40.0%
ACACTTACAACCCTTTCAGT+AGG - chr8_1:12816747-12816766 Msa1179410:intron 40.0%
CACTTACAACCCTTTCAGTA+GGG - chr8_1:12816748-12816767 Msa1179410:intron 40.0%
ACTTACAACCCTTTCAGTAG+GGG - chr8_1:12816749-12816768 Msa1179410:intron 40.0%
CGTCAAGAAATCAATTAGGC+GGG + chr8_1:12816784-12816803 None:intergenic 40.0%
ATTTACTTTCCCTTGTCCCA+TGG - chr8_1:12816827-12816846 Msa1179410:intron 40.0%
AATCCAAATCCATGGGACAA+GGG + chr8_1:12816839-12816858 None:intergenic 40.0%
AAATCCAAATCCATGGGACA+AGG + chr8_1:12816840-12816859 None:intergenic 40.0%
TACTTTCAGGATAAAGCAGC+AGG + chr8_1:12816876-12816895 None:intergenic 40.0%
! TTTGTACACGGATTGAAGGT+CGG - chr8_1:12817118-12817137 Msa1179410:intron 40.0%
CTGACTGAAATTGTTGTGCA+TGG - chr8_1:12817427-12817446 Msa1179410:intron 40.0%
AGGTGATGTTTCTCACTAAG+TGG - chr8_1:12817567-12817586 Msa1179410:intron 40.0%
AGTTCACAGTCCTTCAAAAG+TGG + chr8_1:12817705-12817724 None:intergenic 40.0%
AAGATAGATAAGGTAGGAGG+GGG + chr8_1:12817749-12817768 None:intergenic 40.0%
GGAAAGATAGATAAGGTAGG+AGG + chr8_1:12817752-12817771 None:intergenic 40.0%
! ACTTTTGACAGGATGCTTTG+AGG - chr8_1:12817846-12817865 Msa1179410:intron 40.0%
! CTACACATTTTGGACTTCCA+AGG - chr8_1:12817885-12817904 Msa1179410:intron 40.0%
AGGAAGATCAGAATTACCCT+TGG + chr8_1:12817905-12817924 None:intergenic 40.0%
!! CCCAAAAGGACACTTTTTAC+TGG - chr8_1:12818009-12818028 Msa1179410:intron 40.0%
AGAAAATCAAGGCATGAAGC+TGG + chr8_1:12818074-12818093 None:intergenic 40.0%
GTCACTATTACATACACACC+TGG - chr8_1:12818193-12818212 Msa1179410:intron 40.0%
TCAGATGCATCATACCTTCA+AGG + chr8_1:12818436-12818455 None:intergenic 40.0%
! TGAAGGTATGATGCATCTGA+TGG - chr8_1:12818436-12818455 Msa1179410:intron 40.0%
GATAGCAATTGTGGTCTTCC+TGG - chr8_1:12814412-12814431 Msa1179410:intron 45.0%
TGCACAGTTGGTTAGGAGTT+AGG - chr8_1:12814793-12814812 Msa1179410:intron 45.0%
TCAATTCAAGGCCAGTTTCG+AGG - chr8_1:12814958-12814977 Msa1179410:intron 45.0%
GCCTCACGTGTTTGCTTAAT+TGG - chr8_1:12815000-12815019 Msa1179410:intron 45.0%
CCCAATTAAGCAAACACGTG+AGG + chr8_1:12815004-12815023 None:intergenic 45.0%
ATACACTATGGACAACACCC+TGG + chr8_1:12815336-12815355 None:intergenic 45.0%
GATGTAGATCGCATTCTTGC+TGG - chr8_1:12815534-12815553 Msa1179410:intron 45.0%
TCTCATGCTGATGCAATTGG+AGG - chr8_1:12815663-12815682 Msa1179410:intron 45.0%
TATCAGCTCTGTACCTTCCT+CGG + chr8_1:12816157-12816176 None:intergenic 45.0%
TTTCCCTTGTCCCATGGATT+TGG - chr8_1:12816833-12816852 Msa1179410:intron 45.0%
!! AAGCAGCAGGTGCTATTAAC+AGG + chr8_1:12816863-12816882 None:intergenic 45.0%
! TGTAATCATACCTGGTGCTG+CGG - chr8_1:12817054-12817073 Msa1179410:intron 45.0%
GAAATTGTTGTGCATGGGCT+TGG - chr8_1:12817433-12817452 Msa1179410:intron 45.0%
AGTTTACTCCACTACCAGTG+TGG - chr8_1:12817490-12817509 Msa1179410:intron 45.0%
TGTGGCATGGTCAAGGTTAT+CGG - chr8_1:12817508-12817527 Msa1179410:intron 45.0%
ATGTGTAGCTGAAGAGCGAT+CGG + chr8_1:12817873-12817892 None:intergenic 45.0%
! CGCTCTTCAGCTACACATTT+TGG - chr8_1:12817875-12817894 Msa1179410:intron 45.0%
!! TCTTCCTTTTCAGGCCTTAG+AGG - chr8_1:12817969-12817988 Msa1179410:intron 45.0%
!! ACTTCCTCTAAGGCCTGAAA+AGG + chr8_1:12817976-12817995 None:intergenic 45.0%
GGAGGAAGATTATGCTGACA+TGG + chr8_1:12818053-12818072 None:intergenic 45.0%
AAATCAAGGCATGAAGCTGG+AGG + chr8_1:12818071-12818090 None:intergenic 45.0%
TACACACCTGGTATCGTTTG+CGG - chr8_1:12818205-12818224 Msa1179410:intron 45.0%
TGCAACTGGCTGCAGTATAA+AGG + chr8_1:12818325-12818344 None:intergenic 45.0%
TAAAGGTTCGGAACTGCAAC+TGG + chr8_1:12818339-12818358 None:intergenic 45.0%
ATGCGCAACTGAGCTATGAT+GGG - chr8_1:12818513-12818532 Msa1179410:intron 45.0%
GAAAAAGGCAGAATAGCTGC+AGG + chr8_1:12818697-12818716 None:intergenic 45.0%
TCCGGTGGTTTCCCGAATTT+GGG - chr8_1:12815072-12815091 Msa1179410:intron 50.0%
ACCCAAATTCGGGAAACCAC+CGG + chr8_1:12815076-12815095 None:intergenic 50.0%
TGTAGCCAAGCGTGACTTTG+AGG - chr8_1:12815872-12815891 Msa1179410:intron 50.0%
ATCAGCTCTGTACCTTCCTC+GGG + chr8_1:12816156-12816175 None:intergenic 50.0%
TACAACCCTTTCAGTAGGGG+TGG - chr8_1:12816752-12816771 Msa1179410:intron 50.0%
TGTCACCACCCCTACTGAAA+GGG + chr8_1:12816760-12816779 None:intergenic 50.0%
ATGTCACCACCCCTACTGAA+AGG + chr8_1:12816761-12816780 None:intergenic 50.0%
TAACCTTGACCATGCCACAC+TGG + chr8_1:12817507-12817526 None:intergenic 50.0%
TGTGTAGCTGAAGAGCGATC+GGG + chr8_1:12817872-12817891 None:intergenic 50.0%
GACTGCGATTGATGCAGCAT+CGG + chr8_1:12818277-12818296 None:intergenic 50.0%
CATCAATCGCAGTCACCTTG+TGG - chr8_1:12818283-12818302 Msa1179410:intron 50.0%
TCTCGTTGTTGGCACCTTGA+AGG - chr8_1:12818419-12818438 Msa1179410:intron 50.0%
CATAGCTCAGTTGCGCATCA+AGG + chr8_1:12818511-12818530 None:intergenic 50.0%
GATGCGCAACTGAGCTATGA+TGG - chr8_1:12818512-12818531 Msa1179410:intron 50.0%
CAGGGAGAACTCACTTTCCC+TGG + chr8_1:12814684-12814703 None:intergenic 55.0%
TCTATCACAGTGCTCTCCGG+TGG - chr8_1:12815057-12815076 Msa1179410:intron 55.0%
CTCCGGTGGTTTCCCGAATT+TGG - chr8_1:12815071-12815090 Msa1179410:intron 55.0%
CATGCTTCTCTCTTCTCCCC+AGG - chr8_1:12815795-12815814 Msa1179410:CDS 55.0%
GAGGACCTCAAAGTCACGCT+TGG + chr8_1:12815880-12815899 None:intergenic 55.0%
AGAAGGAAAGAGCAGCGGAG+AGG + chr8_1:12815899-12815918 None:intergenic 55.0%
TCCTCGGGTAATCCCAGTGA+AGG + chr8_1:12816141-12816160 None:intergenic 55.0%
TCACTGGGATTACCCGAGGA+AGG - chr8_1:12816141-12816160 Msa1179410:intron 55.0%
ACTCCACTACCAGTGTGGCA+TGG - chr8_1:12817495-12817514 Msa1179410:intron 55.0%
TGACCATGCCACACTGGTAG+TGG + chr8_1:12817501-12817520 None:intergenic 55.0%
CTACCAGTGTGGCATGGTCA+AGG - chr8_1:12817501-12817520 Msa1179410:intron 55.0%
GGTCAAGGTTATCGGTCCCT+TGG - chr8_1:12817516-12817535 Msa1179410:intron 55.0%
! CGGTCCCTTGGTTTCCGTTT+TGG - chr8_1:12817528-12817547 Msa1179410:intron 55.0%
AGATAAGGTAGGAGGGGGAG+CGG + chr8_1:12817744-12817763 None:intergenic 55.0%
GCCTTCACTGGGATTACCCG+AGG - chr8_1:12816137-12816156 Msa1179410:intron 60.0%
AATGCTGAGACCGCAGCACC+AGG + chr8_1:12817067-12817086 None:intergenic 60.0%
ACGCGACCGCAAACGATACC+AGG + chr8_1:12818214-12818233 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 12814048 12818823 12814048 ID=Msa1179410;Name=Msa1179410
chr8_1 mRNA 12814048 12818823 12814048 ID=Msa1179410-mRNA-1;Parent=Msa1179410;Name=Msa1179410-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.87|0.88|0.88|0.87|0.77|9|264|206
chr8_1 exon 12814048 12814430 12814048 ID=Msa1179410-mRNA-1:exon:4632;Parent=Msa1179410-mRNA-1
chr8_1 exon 12814841 12814889 12814841 ID=Msa1179410-mRNA-1:exon:4631;Parent=Msa1179410-mRNA-1
chr8_1 exon 12814964 12815014 12814964 ID=Msa1179410-mRNA-1:exon:4630;Parent=Msa1179410-mRNA-1
chr8_1 exon 12815137 12815200 12815137 ID=Msa1179410-mRNA-1:exon:4629;Parent=Msa1179410-mRNA-1
chr8_1 exon 12815303 12815379 12815303 ID=Msa1179410-mRNA-1:exon:4628;Parent=Msa1179410-mRNA-1
chr8_1 exon 12815736 12815855 12815736 ID=Msa1179410-mRNA-1:exon:4627;Parent=Msa1179410-mRNA-1
chr8_1 exon 12816978 12817054 12816978 ID=Msa1179410-mRNA-1:exon:4626;Parent=Msa1179410-mRNA-1
chr8_1 exon 12817187 12817242 12817187 ID=Msa1179410-mRNA-1:exon:4625;Parent=Msa1179410-mRNA-1
chr8_1 exon 12818816 12818823 12818816 ID=Msa1179410-mRNA-1:exon:4624;Parent=Msa1179410-mRNA-1
chr8_1 CDS 12818816 12818823 12818816 ID=Msa1179410-mRNA-1:cds;Parent=Msa1179410-mRNA-1
chr8_1 CDS 12817187 12817242 12817187 ID=Msa1179410-mRNA-1:cds;Parent=Msa1179410-mRNA-1
chr8_1 CDS 12816978 12817054 12816978 ID=Msa1179410-mRNA-1:cds;Parent=Msa1179410-mRNA-1
chr8_1 CDS 12815736 12815855 12815736 ID=Msa1179410-mRNA-1:cds;Parent=Msa1179410-mRNA-1
chr8_1 CDS 12815303 12815379 12815303 ID=Msa1179410-mRNA-1:cds;Parent=Msa1179410-mRNA-1
chr8_1 CDS 12815137 12815200 12815137 ID=Msa1179410-mRNA-1:cds;Parent=Msa1179410-mRNA-1
chr8_1 CDS 12814964 12815014 12814964 ID=Msa1179410-mRNA-1:cds;Parent=Msa1179410-mRNA-1
chr8_1 CDS 12814841 12814889 12814841 ID=Msa1179410-mRNA-1:cds;Parent=Msa1179410-mRNA-1
chr8_1 CDS 12814312 12814430 12814312 ID=Msa1179410-mRNA-1:cds;Parent=Msa1179410-mRNA-1
chr8_1 three_prime_UTR 12814048 12814311 12814048 ID=Msa1179410-mRNA-1:three_prime_utr;Parent=Msa1179410-mRNA-1
Gene Sequence

>Msa1179410

ATGAGACTGATAAGAACACTTGATGCAGTTATTATTACTCATTCTCATGCTGATGCAATTGGAGGTCTTGATGATCTTAGAGACTGGACTAACAATGTTCAGCCCTCCATTCCAATTTATGTAGCCAAGCGTGACTTTGAGGTGATGAAGAAGACCCATTATTATTTAGTTGATACAAGTGTAATCATACCTGGTGCTGCGGTCTCAGCATTGCAATTCAATAGCATATCTGAAGAACCTTTTTTTGTACACGGATTGAAGTTTACTCCACTACCAGTGTGGCATGGTCAAGGTTATCGGTCCCTTGGTTTCCGTTTTGGTAATATATGTTACATAAGTGATGTCAGTGAAATTCCTGAAGAAACTTATCCACTTTTGAAGGACTGTGAACTTCTAATAATGGATGCTTTGAGGCCCGATCGCTCTTCAGCTACACATTTTGGACTTCCAAGGGCCTTAGAGGAAGTGAGAAAAATTCAACCCAAAAGGACACTTTTTACTGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTACCTTACAAAATTATTGGAGTCTGAGGGCCTTGATGCGCAACTGAGCTATGATGGGCTTTGTATAGCAGTCAGACTCTAA

Protein sequence

>Msa1179410

MRLIRTLDAVIITHSHADAIGGLDDLRDWTNNVQPSIPIYVAKRDFEVMKKTHYYLVDTSVIIPGAAVSALQFNSISEEPFFVHGLKFTPLPVWHGQGYRSLGFRFGNICYISDVSEIPEETYPLLKDCELLIMDALRPDRSSATHFGLPRALEEVRKIQPKRTLFTGMMHLMDHEEVNDYLTKLLESEGLDAQLSYDGLCIAVRL*