AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0118250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118250 MtrunA17_Chr1g0175321 97.288 295 8 0 1 295 3 297 0.0 588
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118250 AT2G42130.4 67.626 278 83 4 23 295 24 299 8.31e-132 376
Msa0118250 AT3G58010.1 68.443 244 74 2 39 280 48 290 1.53e-125 360
Msa0118250 AT3G58010.2 68.443 244 74 2 39 280 48 290 1.53e-125 360
Msa0118250 AT2G42130.3 66.300 273 67 4 46 295 1 271 1.06e-124 357
Msa0118250 AT2G42130.2 70.040 247 68 3 23 264 24 269 2.80e-121 348
Msa0118250 AT2G42130.1 66.807 238 73 3 23 255 24 260 5.82e-109 317
Msa0118250 AT2G42130.5 71.078 204 58 1 92 295 2 204 2.79e-105 305

Find 84 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAACAGCCATTGAAAAT+TGG 0.215694 1_3:+40561450 None:intergenic
CAATCCCTTCATCTTCTTCA+TGG 0.263944 1_3:-40561379 Msa0118250:CDS
TTTACTTAACACCTCGAATA+AGG 0.269104 1_3:+40557551 None:intergenic
CATAGGGAATTTAAAGTAAC+AGG 0.273960 1_3:+40557525 None:intergenic
TTCTTAGTCTCTTACGTTGT+GGG 0.278150 1_3:+40560174 None:intergenic
ATGTTTCTGCAGATACTTAC+TGG 0.303737 1_3:-40557330 Msa0118250:three_prime_UTR
TGATACTAAAACATGAAATA+TGG 0.307908 1_3:+40557456 None:intergenic
TGGTTTGGTCCCGGCTCTCC+AGG 0.323449 1_3:-40560054 Msa0118250:CDS
TCGAGTCTCGTTAAAACTTC+TGG 0.337043 1_3:+40557653 None:intergenic
CGATGGAACTTTGAGTGGTT+TGG 0.345387 1_3:-40560069 Msa0118250:CDS
CGATGCATCGCCGTCATCCC+TGG 0.349723 1_3:-40557633 Msa0118250:CDS
TGGTTCTGATGCAGATAATA+AGG 0.361190 1_3:-40557691 Msa0118250:intron
AACACCTAGCTTTCATAATC+TGG 0.372388 1_3:+40557599 None:intergenic
TACGTTGTGGGCCGAGGTGT+TGG 0.377460 1_3:+40560186 None:intergenic
GACAAATTAGCTAAACTTGA+AGG 0.384219 1_3:+40559864 None:intergenic
AGAGTACCAGATCAGCTTAA+AGG 0.398637 1_3:-40559323 Msa0118250:CDS
GATGTGAATGAAAGGATAAC+TGG 0.412353 1_3:-40560225 Msa0118250:CDS
TGCTGCTTATGCTAAGGAAA+TGG 0.412492 1_3:-40561279 Msa0118250:CDS
GTCTCTTACGTTGTGGGCCG+AGG 0.413534 1_3:+40560180 None:intergenic
CGCAAACAACCCTGGAGAGC+CGG 0.413785 1_3:+40560044 None:intergenic
ATGAAAGCTAGGTGTTTGTA+TGG 0.422518 1_3:-40557592 Msa0118250:exon
AACTTTGAGTGGTTTGGTCC+CGG 0.437249 1_3:-40560063 Msa0118250:CDS
CTCCAGGGTTGTTTGCGGCT+AGG 0.445478 1_3:-40560038 Msa0118250:CDS
TGGCCCCTCCACAGTTAACT+TGG 0.446873 1_3:+40559406 None:intergenic
TACAGGTCACCCTTTCTAGA+AGG 0.454407 1_3:-40560093 Msa0118250:intron
AGTGCACCTTTAAGCTGATC+TGG 0.469556 1_3:+40559317 None:intergenic
TATTGTGTCACCAACAGTCT+TGG 0.471270 1_3:-40559351 Msa0118250:CDS
GCAAACAACCCTGGAGAGCC+GGG 0.475524 1_3:+40560045 None:intergenic
GCTTAAAGGTGCACTTGGGC+AGG 0.488898 1_3:-40559309 Msa0118250:CDS
AAGTGTTTGTTGTTCAACTT+AGG 0.490261 1_3:+40561529 None:intergenic
ATGGATGTCTTTATCAAGGA+TGG 0.497103 1_3:-40559837 Msa0118250:CDS
GGTTTGGTCCCGGCTCTCCA+GGG 0.497726 1_3:-40560053 Msa0118250:CDS
TTACGTGATGCTCTCGCCGA+TGG 0.498253 1_3:-40559254 Msa0118250:CDS
TACTCCTCTTTCATTCTAAG+TGG 0.499661 1_3:+40559386 None:intergenic
GCGTGGTTGTTGCAGAGCTA+TGG 0.499922 1_3:-40561324 Msa0118250:CDS
TTCCATCGACCTTCTAGAAA+GGG 0.507609 1_3:+40560084 None:intergenic
AAGTGTTGTGTTGTGTGTGT+GGG 0.507655 1_3:+40561553 None:intergenic
TGAAACTTCTATATTCACAT+AGG 0.508120 1_3:+40557508 None:intergenic
TGAAAGAGGAGTATGTGGAA+GGG 0.508535 1_3:-40559376 Msa0118250:CDS
GATCAGCTTAAAGGTGCACT+TGG 0.509335 1_3:-40559314 Msa0118250:CDS
GAAGCGATTCTTTAGCAGAA+AGG 0.509807 1_3:+40561252 None:intergenic
GTTCCATCGACCTTCTAGAA+AGG 0.510788 1_3:+40560083 None:intergenic
GAAACTTCTATATTCACATA+GGG 0.514617 1_3:+40557509 None:intergenic
ATGAAAGAGGAGTATGTGGA+AGG 0.518572 1_3:-40559377 Msa0118250:CDS
GCTATGGTTCAAGTTCAAAC+TGG 0.521173 1_3:-40561308 Msa0118250:CDS
CGGCTCTCCAGGGTTGTTTG+CGG 0.524440 1_3:-40560043 Msa0118250:CDS
CAGATAATAAGGAACACAGC+TGG 0.524577 1_3:-40557680 Msa0118250:CDS
ACTTTCCATGAAGAAGATGA+AGG 0.524783 1_3:+40561374 None:intergenic
AATCTGGACTTGATTCTCCC+AGG 0.529092 1_3:+40557615 None:intergenic
AAGTCCAGATTATGAAAGCT+AGG 0.531868 1_3:-40557603 Msa0118250:exon
AGTTACTTCTCAACATGGAA+TGG 0.534320 1_3:+40561501 None:intergenic
TCAACCAAGTTAACTGTGGA+GGG 0.536332 1_3:-40559410 Msa0118250:CDS
ATTTCCTTAGCATAAGCAGC+AGG 0.537111 1_3:+40561281 None:intergenic
ATCCTAGCCGCAAACAACCC+TGG 0.540466 1_3:+40560036 None:intergenic
AAAGAATTGATGTGAATGAA+AGG 0.540601 1_3:-40560233 Msa0118250:CDS
TAAGTGTTGTGTTGTGTGTG+TGG 0.543031 1_3:+40561552 None:intergenic
CTTGATTCTCCCAGGGATGA+CGG 0.547658 1_3:+40557623 None:intergenic
GATGCATCGCCGTCATCCCT+GGG 0.548574 1_3:-40557632 Msa0118250:CDS
TAGAATGAAAGAGGAGTATG+TGG 0.549259 1_3:-40559381 Msa0118250:CDS
TACGTGATGCTCTCGCCGAT+GGG 0.553971 1_3:-40559253 Msa0118250:CDS
ATCTGGACTTGATTCTCCCA+GGG 0.556575 1_3:+40557616 None:intergenic
CACCCTTTCTAGAAGGTCGA+TGG 0.556922 1_3:-40560086 Msa0118250:CDS
ACTTCTCAACATGGAATGGA+AGG 0.558011 1_3:+40561505 None:intergenic
CTTTCCATGAAGAAGATGAA+GGG 0.562335 1_3:+40561375 None:intergenic
AGAGCATCACGTAAAGGTAC+GGG 0.563086 1_3:+40559263 None:intergenic
CTCAACCAAGTTAACTGTGG+AGG 0.564278 1_3:-40559411 Msa0118250:CDS
GAGAGCATCACGTAAAGGTA+CGG 0.569225 1_3:+40559262 None:intergenic
AAGGTCGATGGAACTTTGAG+TGG 0.570543 1_3:-40560074 Msa0118250:CDS
AGATAATAAGGAACACAGCT+GGG 0.572812 1_3:-40557679 Msa0118250:CDS
CATGATTTCTTATCTCGATG+AGG 0.578981 1_3:-40558594 Msa0118250:CDS
TCGGCGAGAGCATCACGTAA+AGG 0.589648 1_3:+40559257 None:intergenic
ACTCTGTCTTCCAAGACTGT+TGG 0.591239 1_3:+40559341 None:intergenic
GGGGCCACTTAGAATGAAAG+AGG 0.591481 1_3:-40559390 Msa0118250:CDS
CGCATCACGTGGCAGAAGCG+TGG 0.611910 1_3:-40561341 Msa0118250:CDS
TTTCAGTTTAAGGATGCAGG+TGG 0.612143 1_3:-40560294 Msa0118250:intron
TGCACCTGCTGCTTATGCTA+AGG 0.621082 1_3:-40561285 Msa0118250:CDS
TTTGTGATTGTTGAAATACA+AGG 0.627714 1_3:+40561407 None:intergenic
ATCAGCTTAAAGGTGCACTT+GGG 0.627941 1_3:-40559313 Msa0118250:CDS
CAACCAAGTTAACTGTGGAG+GGG 0.634924 1_3:-40559409 Msa0118250:CDS
ACTTAACACCTCGAATAAGG+AGG 0.635193 1_3:+40557554 None:intergenic
TCTCTCAACCAAGTTAACTG+TGG 0.636429 1_3:-40559414 Msa0118250:CDS
AAAGGATAACTGGTCTTGAG+CGG 0.638722 1_3:-40560215 Msa0118250:CDS
TTTCAACTTCACGCATCACG+TGG 0.646833 1_3:-40561352 Msa0118250:CDS
AGCGGCTCAATCCAACACCT+CGG 0.670774 1_3:-40560197 Msa0118250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACAAAAATTAAAACAAT+GGG + chr1_3:40557713-40557732 None:intergenic 10.0%
!! ATTAACAAAAATTAAAACAA+TGG + chr1_3:40557714-40557733 None:intergenic 10.0%
!!! TTTGTTAATTTATTTAGTTT+TGG - chr1_3:40557725-40557744 Msa0118250:intron 10.0%
!! TTATAATTGAAAAAACTTAT+AGG + chr1_3:40559323-40559342 None:intergenic 10.0%
!!! AATTTTAAACAAAATATGAA+AGG + chr1_3:40559410-40559429 None:intergenic 10.0%
!! ATATAAAATCTGTTAAATAT+TGG - chr1_3:40559733-40559752 Msa0118250:intron 10.0%
!!! ATTTTTCTTTTCATTTTAAT+AGG - chr1_3:40561102-40561121 Msa0118250:intron 10.0%
!!! TTTTTTTTTTATTTCACTAT+TGG + chr1_3:40561501-40561520 None:intergenic 10.0%
!! TAACAAAAATTAAAACAATG+GGG + chr1_3:40557712-40557731 None:intergenic 15.0%
!!! ATAATTGATTTTGATATGTT+TGG - chr1_3:40557825-40557844 Msa0118250:intron 15.0%
!!! AAACACATTATTTTTAAACT+CGG - chr1_3:40559085-40559104 Msa0118250:intron 15.0%
!!! GTTTTATATATTTCATGAAA+TGG - chr1_3:40559887-40559906 Msa0118250:intron 15.0%
!! TCTATAATTATTTACTGAAT+TGG + chr1_3:40560329-40560348 None:intergenic 15.0%
!!! TGCTTAATTTTTTGGATTAT+TGG - chr1_3:40557682-40557701 Msa0118250:intron 20.0%
!! AATTTACTTAAGTGTATGTT+TGG - chr1_3:40557763-40557782 Msa0118250:intron 20.0%
!! ATATACATTCATGTAAAAGT+GGG + chr1_3:40558059-40558078 None:intergenic 20.0%
!! TATATACATTCATGTAAAAG+TGG + chr1_3:40558060-40558079 None:intergenic 20.0%
!! TGATTAAATTATTGCATGTT+TGG + chr1_3:40558173-40558192 None:intergenic 20.0%
!! ATTGAAACCAATTTATACAA+GGG - chr1_3:40558195-40558214 Msa0118250:intron 20.0%
!! ATTATAACCCTTGTATAAAT+TGG + chr1_3:40558205-40558224 None:intergenic 20.0%
!!! AACTTCATTTTATTCTTGTT+GGG + chr1_3:40558487-40558506 None:intergenic 20.0%
!! TTATTCAAAAAGCTTAGAAA+TGG + chr1_3:40558736-40558755 None:intergenic 20.0%
!!! TTTAGCTAATTTGTCAAAAA+TGG - chr1_3:40559025-40559044 Msa0118250:intron 20.0%
!! TGAAAATCATTATGTAAAAG+AGG + chr1_3:40559180-40559199 None:intergenic 20.0%
!!! TGAAATAATTTTACTTTCTG+TGG + chr1_3:40559217-40559236 None:intergenic 20.0%
!! AAATATGTCATAACAAGAAA+GGG + chr1_3:40559240-40559259 None:intergenic 20.0%
!!! TAAGAAATAATGTACACTTT+TGG - chr1_3:40560098-40560117 Msa0118250:intron 20.0%
!!! TTTTCAACAACTTCAAAATA+TGG - chr1_3:40560691-40560710 Msa0118250:intron 20.0%
!!! TTCAAATTGATTTTAGTAAG+TGG + chr1_3:40560873-40560892 None:intergenic 20.0%
!!! CGGCAAATATATAATTTTAT+TGG + chr1_3:40560975-40560994 None:intergenic 20.0%
!! GAAAAAAATTGAAAAGCAAT+AGG - chr1_3:40561064-40561083 Msa0118250:intron 20.0%
!! GAGATAATTATAGGTAAAAA+TGG + chr1_3:40561140-40561159 None:intergenic 20.0%
!!! AAATATGGTTTTGTAAGAAA+TGG + chr1_3:40561413-40561432 None:intergenic 20.0%
!! TGATACTAAAACATGAAATA+TGG + chr1_3:40561428-40561447 None:intergenic 20.0%
!!! TTTTTTATTTCACTATTGGA+TGG + chr1_3:40561497-40561516 None:intergenic 20.0%
! TTTGTGATTGTTGAAATACA+AGG + chr1_3:40557477-40557496 None:intergenic 25.0%
!! TCCTTTTCTGCTTAATTTTT+TGG - chr1_3:40557674-40557693 Msa0118250:CDS 25.0%
! TCCAAAAAATTAAGCAGAAA+AGG + chr1_3:40557678-40557697 None:intergenic 25.0%
!! CTTGTATAAATTGGTTTCAA+TGG + chr1_3:40558196-40558215 None:intergenic 25.0%
! CATTGAAACCAATTTATACA+AGG - chr1_3:40558194-40558213 Msa0118250:intron 25.0%
! AATAACAGTTACAAGTAATG+AGG - chr1_3:40558243-40558262 Msa0118250:intron 25.0%
! ATTGTGATATGATAGCTAAA+AGG - chr1_3:40558267-40558286 Msa0118250:intron 25.0%
!! CAACTTCATTTTATTCTTGT+TGG + chr1_3:40558488-40558507 None:intergenic 25.0%
! AAAGAATTGATGTGAATGAA+AGG - chr1_3:40558648-40558667 Msa0118250:intron 25.0%
!! AGCTTTTTGAATAAGATGTA+AGG - chr1_3:40558742-40558761 Msa0118250:intron 25.0%
!! GCTTTTTGAATAAGATGTAA+GGG - chr1_3:40558743-40558762 Msa0118250:intron 25.0%
! AAAAATGGATGTCTTTATCA+AGG - chr1_3:40559040-40559059 Msa0118250:intron 25.0%
! CAAATATGTCATAACAAGAA+AGG + chr1_3:40559241-40559260 None:intergenic 25.0%
! CATAACTACCTGTTAAAAAA+AGG + chr1_3:40559276-40559295 None:intergenic 25.0%
!!! CTTTTTTTAACAGGTAGTTA+TGG - chr1_3:40559274-40559293 Msa0118250:CDS 25.0%
! ATTGAAAAAACTTATAGGCA+TGG + chr1_3:40559318-40559337 None:intergenic 25.0%
! AATTCTCATACACATATATG+TGG - chr1_3:40559958-40559977 Msa0118250:intron 25.0%
! ATTCTCATACACATATATGT+GGG - chr1_3:40559959-40559978 Msa0118250:intron 25.0%
! TGTAAATATCTACCAACATA+AGG + chr1_3:40560061-40560080 None:intergenic 25.0%
! AACAACTTCAAAATATGGAA+GGG - chr1_3:40560696-40560715 Msa0118250:intron 25.0%
! ATAAATTTAGGAGGAAATCT+AGG + chr1_3:40560907-40560926 None:intergenic 25.0%
! TTTCATCCAGCTATAAATTT+AGG + chr1_3:40560919-40560938 None:intergenic 25.0%
!! CCATGATTTGAGATAATTAT+AGG + chr1_3:40561149-40561168 None:intergenic 25.0%
! CCTATAATTATCTCAAATCA+TGG - chr1_3:40561146-40561165 Msa0118250:intron 25.0%
! GAAACTTCTATATTCACATA+GGG + chr1_3:40561375-40561394 None:intergenic 25.0%
! TGAAACTTCTATATTCACAT+AGG + chr1_3:40561376-40561395 None:intergenic 25.0%
!! TTTTAGTATCACAACAAAAG+TGG - chr1_3:40561437-40561456 Msa0118250:CDS 25.0%
!! AAGTGTTTGTTGTTCAACTT+AGG + chr1_3:40557355-40557374 None:intergenic 30.0%
TAGTTAGTTACTTCTCAACA+TGG + chr1_3:40557388-40557407 None:intergenic 30.0%
! GAACTGAAACCAATTTTCAA+TGG - chr1_3:40557422-40557441 Msa0118250:three_prime_UTR 30.0%
!! ATTTTGATGAACTATGAGTG+TGG - chr1_3:40557877-40557896 Msa0118250:intron 30.0%
CGAGTTAGAATCAGTTATAA+AGG + chr1_3:40557946-40557965 None:intergenic 30.0%
CAATTGTAGAAGCAAAATGA+CGG + chr1_3:40558010-40558029 None:intergenic 30.0%
ACATTCTACTCACTTTCAAT+CGG - chr1_3:40558095-40558114 Msa0118250:intron 30.0%
GAACTAACTACACAAATTGT+TGG - chr1_3:40558289-40558308 Msa0118250:intron 30.0%
TTCAAAAAGCTTAGAAATGG+AGG + chr1_3:40558733-40558752 None:intergenic 30.0%
AACAATCCGAAGAAAAACTT+CGG + chr1_3:40558914-40558933 None:intergenic 30.0%
CGAGATGAAGCTAAATTTAA+GGG + chr1_3:40558948-40558967 None:intergenic 30.0%
CTGCAAATATATAAAGCACA+GGG + chr1_3:40558990-40559009 None:intergenic 30.0%
GACAAATTAGCTAAACTTGA+AGG + chr1_3:40559020-40559039 None:intergenic 30.0%
AACTACCTGTTAAAAAAAGG+TGG + chr1_3:40559273-40559292 None:intergenic 30.0%
!! TGAAATGGATTTTCTCTAGT+TGG - chr1_3:40559902-40559921 Msa0118250:intron 30.0%
!!! CCACAAGTTACTTTCTTTTT+TGG + chr1_3:40559991-40560010 None:intergenic 30.0%
CCAAAAAAGAAAGTAACTTG+TGG - chr1_3:40559988-40560007 Msa0118250:intron 30.0%
! TGATGTCATTTCATGTTTGA+AGG - chr1_3:40560243-40560262 Msa0118250:CDS 30.0%
TCAAGTTAGATTCATATGCA+TGG + chr1_3:40560384-40560403 None:intergenic 30.0%
TAACTGTTGCATTATCAGAT+TGG - chr1_3:40560467-40560486 Msa0118250:intron 30.0%
CAACAACTTCAAAATATGGA+AGG - chr1_3:40560695-40560714 Msa0118250:intron 30.0%
ATGTGAGAATGATAGAATTG+AGG + chr1_3:40560806-40560825 None:intergenic 30.0%
TTTCCTCCTAAATTTATAGC+TGG - chr1_3:40560910-40560929 Msa0118250:intron 30.0%
AGCATGTATAAGAGAATTGA+GGG + chr1_3:40561015-40561034 None:intergenic 30.0%
TAGCATGTATAAGAGAATTG+AGG + chr1_3:40561016-40561035 None:intergenic 30.0%
TCAATTCTCTTATACATGCT+AGG - chr1_3:40561015-40561034 Msa0118250:intron 30.0%
TCTCAAATCATGGTAATATC+TGG - chr1_3:40561156-40561175 Msa0118250:intron 30.0%
! AATATCTGGAATGATTATGC+TGG - chr1_3:40561170-40561189 Msa0118250:intron 30.0%
! ATATTTTACCTCCTTATTCG+AGG - chr1_3:40561319-40561338 Msa0118250:CDS 30.0%
TTTACTTAACACCTCGAATA+AGG + chr1_3:40561333-40561352 None:intergenic 30.0%
! CATAGGGAATTTAAAGTAAC+AGG + chr1_3:40561359-40561378 None:intergenic 30.0%
AGTTACTTCTCAACATGGAA+TGG + chr1_3:40557383-40557402 None:intergenic 35.0%
CAGAAACAGCCATTGAAAAT+TGG + chr1_3:40557434-40557453 None:intergenic 35.0%
CTTTCCATGAAGAAGATGAA+GGG + chr1_3:40557509-40557528 None:intergenic 35.0%
ACTTTCCATGAAGAAGATGA+AGG + chr1_3:40557510-40557529 None:intergenic 35.0%
TAAGCAGAAAAGGAAATGAG+TGG + chr1_3:40557668-40557687 None:intergenic 35.0%
!! TTTGGTTCTACTCTAAGATG+AGG - chr1_3:40557781-40557800 Msa0118250:intron 35.0%
! TGAGGCAAAATTGATTTCAG+AGG - chr1_3:40557799-40557818 Msa0118250:intron 35.0%
ACATTCATGTAAAAGTGGGT+TGG + chr1_3:40558055-40558074 None:intergenic 35.0%
! ATTGACTTAGAACGAGCTAA+AGG - chr1_3:40558337-40558356 Msa0118250:intron 35.0%
!! CCATAAAGCATCGAGTTTAT+GGG + chr1_3:40558383-40558402 None:intergenic 35.0%
!! ACCATAAAGCATCGAGTTTA+TGG + chr1_3:40558384-40558403 None:intergenic 35.0%
! AACTCGATGCTTTATGGTTT+TGG - chr1_3:40558386-40558405 Msa0118250:intron 35.0%
! ACTCGATGCTTTATGGTTTT+GGG - chr1_3:40558387-40558406 Msa0118250:intron 35.0%
AACAACAATCGAGTAAAGAC+CGG + chr1_3:40558445-40558464 None:intergenic 35.0%
AGTGAATTTGAGTACAAGCT+TGG + chr1_3:40558551-40558570 None:intergenic 35.0%
GTACTCAAATTCACTTACTC+TGG - chr1_3:40558556-40558575 Msa0118250:intron 35.0%
! GGAGACATCTTTTCAGTTTA+AGG - chr1_3:40558577-40558596 Msa0118250:intron 35.0%
! TCTTTTCAGTTTAAGGATGC+AGG - chr1_3:40558584-40558603 Msa0118250:intron 35.0%
GATGTGAATGAAAGGATAAC+TGG - chr1_3:40558656-40558675 Msa0118250:intron 35.0%
TTCTTAGTCTCTTACGTTGT+GGG + chr1_3:40558710-40558729 None:intergenic 35.0%
TTCATGCTCTTTATTGCTAC+AGG - chr1_3:40558771-40558790 Msa0118250:intron 35.0%
! GTTAGTCCGAAGTTTTTCTT+CGG - chr1_3:40558905-40558924 Msa0118250:intron 35.0%
GCGAGATGAAGCTAAATTTA+AGG + chr1_3:40558949-40558968 None:intergenic 35.0%
CCTGCAAATATATAAAGCAC+AGG + chr1_3:40558991-40559010 None:intergenic 35.0%
CCTGTGCTTTATATATTTGC+AGG - chr1_3:40558988-40559007 Msa0118250:intron 35.0%
ATGGATGTCTTTATCAAGGA+TGG - chr1_3:40559044-40559063 Msa0118250:intron 35.0%
!!! AGTGTCCACCTTTTTTTAAC+AGG - chr1_3:40559265-40559284 Msa0118250:CDS 35.0%
AGGTACAACAAACTCTTTCT+AGG + chr1_3:40559390-40559409 None:intergenic 35.0%
TACTCCTCTTTCATTCTAAG+TGG + chr1_3:40559498-40559517 None:intergenic 35.0%
! TAGAATGAAAGAGGAGTATG+TGG - chr1_3:40559500-40559519 Msa0118250:intron 35.0%
GAGGTGAATATAGAAATCAG+TGG + chr1_3:40559678-40559697 None:intergenic 35.0%
! AAGTCAGAGAACATTTTCAG+AGG + chr1_3:40559697-40559716 None:intergenic 35.0%
CACGAAACAACAGAATAAAC+AGG + chr1_3:40559786-40559805 None:intergenic 35.0%
ATATCTAGCAATTTCAAGCC+AGG + chr1_3:40560019-40560038 None:intergenic 35.0%
CAGTAAGAAATGCCTTATGT+TGG - chr1_3:40560046-40560065 Msa0118250:CDS 35.0%
! TGTCATTTCATGTTTGAAGG+TGG - chr1_3:40560246-40560265 Msa0118250:CDS 35.0%
CATGATTTCTTATCTCGATG+AGG - chr1_3:40560287-40560306 Msa0118250:CDS 35.0%
ATATGCATGGTAATCTACGA+AGG + chr1_3:40560371-40560390 None:intergenic 35.0%
TGCATTATCAGATTGGAATG+TGG - chr1_3:40560474-40560493 Msa0118250:intron 35.0%
! GTAAGACTTTCTGGAAATCA+AGG + chr1_3:40560565-40560584 None:intergenic 35.0%
TGAGAATGAAAAATCGCCTA+GGG - chr1_3:40560757-40560776 Msa0118250:intron 35.0%
AAAATCGCCTAGGGTTTAAT+AGG - chr1_3:40560766-40560785 Msa0118250:intron 35.0%
CATCCAGCTATAAATTTAGG+AGG + chr1_3:40560916-40560935 None:intergenic 35.0%
TATAGCTGGATGAAAGTTCT+AGG - chr1_3:40560924-40560943 Msa0118250:intron 35.0%
ATGCTAGGTTTGAATGACAT+GGG - chr1_3:40561030-40561049 Msa0118250:intron 35.0%
!! TGGTTCTGATGCAGATAATA+AGG - chr1_3:40561190-40561209 Msa0118250:intron 35.0%
AGATAATAAGGAACACAGCT+GGG - chr1_3:40561202-40561221 Msa0118250:intron 35.0%
AAGTCCAGATTATGAAAGCT+AGG - chr1_3:40561278-40561297 Msa0118250:CDS 35.0%
! AACACCTAGCTTTCATAATC+TGG + chr1_3:40561285-40561304 None:intergenic 35.0%
ATGAAAGCTAGGTGTTTGTA+TGG - chr1_3:40561289-40561308 Msa0118250:CDS 35.0%
! ATGTTTCTGCAGATACTTAC+TGG - chr1_3:40561551-40561570 Msa0118250:five_prime_UTR 35.0%
! AAGTGTTGTGTTGTGTGTGT+GGG + chr1_3:40557331-40557350 None:intergenic 40.0%
! TAAGTGTTGTGTTGTGTGTG+TGG + chr1_3:40557332-40557351 None:intergenic 40.0%
ACTTCTCAACATGGAATGGA+AGG + chr1_3:40557379-40557398 None:intergenic 40.0%
CAATCCCTTCATCTTCTTCA+TGG - chr1_3:40557502-40557521 Msa0118250:three_prime_UTR 40.0%
! GCTATGGTTCAAGTTCAAAC+TGG - chr1_3:40557573-40557592 Msa0118250:three_prime_UTR 40.0%
ATTTCCTTAGCATAAGCAGC+AGG + chr1_3:40557603-40557622 None:intergenic 40.0%
! TGCTGCTTATGCTAAGGAAA+TGG - chr1_3:40557602-40557621 Msa0118250:exon 40.0%
GAAGCGATTCTTTAGCAGAA+AGG + chr1_3:40557632-40557651 None:intergenic 40.0%
ATGAGTGTGGTTAAGCATCA+AGG - chr1_3:40557890-40557909 Msa0118250:intron 40.0%
!! TCATGTAAAAGTGGGTTGGA+TGG + chr1_3:40558051-40558070 None:intergenic 40.0%
ACTTAGAACGAGCTAAAGGA+AGG - chr1_3:40558341-40558360 Msa0118250:intron 40.0%
CCCATAAACTCGATGCTTTA+TGG - chr1_3:40558380-40558399 Msa0118250:intron 40.0%
TATTCTTGTTGGGAAGTCCA+GGG + chr1_3:40558477-40558496 None:intergenic 40.0%
TTATTCTTGTTGGGAAGTCC+AGG + chr1_3:40558478-40558497 None:intergenic 40.0%
TTTCAGTTTAAGGATGCAGG+TGG - chr1_3:40558587-40558606 Msa0118250:CDS 40.0%
!!! GTTTTGAGAGCTTAGTCTCT+GGG - chr1_3:40558609-40558628 Msa0118250:CDS 40.0%
!! AAAGGATAACTGGTCTTGAG+CGG - chr1_3:40558666-40558685 Msa0118250:intron 40.0%
GTTCTTAGTCTCTTACGTTG+TGG + chr1_3:40558711-40558730 None:intergenic 40.0%
! TTCCATCGACCTTCTAGAAA+GGG + chr1_3:40558800-40558819 None:intergenic 40.0%
!! AGGGAAGCATTGTAACTCAA+AGG + chr1_3:40558971-40558990 None:intergenic 40.0%
TCTCTCAACCAAGTTAACTG+TGG - chr1_3:40559467-40559486 Msa0118250:intron 40.0%
TCAACCAAGTTAACTGTGGA+GGG - chr1_3:40559471-40559490 Msa0118250:intron 40.0%
! ATGAAAGAGGAGTATGTGGA+AGG - chr1_3:40559504-40559523 Msa0118250:intron 40.0%
! TGAAAGAGGAGTATGTGGAA+GGG - chr1_3:40559505-40559524 Msa0118250:intron 40.0%
TATTGTGTCACCAACAGTCT+TGG - chr1_3:40559530-40559549 Msa0118250:intron 40.0%
! AGAGTACCAGATCAGCTTAA+AGG - chr1_3:40559558-40559577 Msa0118250:intron 40.0%
! ATCAGCTTAAAGGTGCACTT+GGG - chr1_3:40559568-40559587 Msa0118250:intron 40.0%
! TAGTGGAACTTTTAGCCCAT+CGG + chr1_3:40559646-40559665 None:intergenic 40.0%
ATCAGTGGTAGCTTACTTAG+TGG + chr1_3:40559663-40559682 None:intergenic 40.0%
GTTCTCTGACTTAACTGTTC+TGG - chr1_3:40559705-40559724 Msa0118250:intron 40.0%
ACCATGCGCTGCTAATATTA+GGG - chr1_3:40559760-40559779 Msa0118250:intron 40.0%
AAATATGTGCGCACAAAGAC+AGG - chr1_3:40560148-40560167 Msa0118250:intron 40.0%
TGCACTAAGAAACGCATGTA+TGG - chr1_3:40560423-40560442 Msa0118250:intron 40.0%
! TATGGTTGCAACTGGTGTTT+TGG - chr1_3:40560441-40560460 Msa0118250:intron 40.0%
! GTGATGTACGTTACACCTTT+TGG - chr1_3:40560523-40560542 Msa0118250:intron 40.0%
! TTACACCTTTTGGTCATGCT+GGG - chr1_3:40560533-40560552 Msa0118250:intron 40.0%
TCTTACACTGTCACGTGTAA+AGG - chr1_3:40560579-40560598 Msa0118250:intron 40.0%
CAGAAAGTGAAACTACTCAG+AGG + chr1_3:40560664-40560683 None:intergenic 40.0%
CTCTGAGTAGTTTCACTTTC+TGG - chr1_3:40560662-40560681 Msa0118250:intron 40.0%
! TTTTCCTCACTGTCACAGTT+TGG - chr1_3:40560723-40560742 Msa0118250:intron 40.0%
CTGAGAATGAAAAATCGCCT+AGG - chr1_3:40560756-40560775 Msa0118250:intron 40.0%
TAGGGTTTAATAGGTCTCGA+GGG - chr1_3:40560775-40560794 Msa0118250:intron 40.0%
GGGCAACAACAGATTTACAT+CGG + chr1_3:40560995-40561014 None:intergenic 40.0%
CATGCTAGGTTTGAATGACA+TGG - chr1_3:40561029-40561048 Msa0118250:intron 40.0%
GTTTGAATGACATGGGAACA+TGG - chr1_3:40561037-40561056 Msa0118250:intron 40.0%
AATGACATGGGAACATGGAA+AGG - chr1_3:40561042-40561061 Msa0118250:intron 40.0%
CAGATAATAAGGAACACAGC+TGG - chr1_3:40561201-40561220 Msa0118250:intron 40.0%
TCGAGTCTCGTTAAAACTTC+TGG + chr1_3:40561231-40561250 None:intergenic 40.0%
ACTTAACACCTCGAATAAGG+AGG + chr1_3:40561330-40561349 None:intergenic 40.0%
TTTCAACTTCACGCATCACG+TGG - chr1_3:40557529-40557548 Msa0118250:three_prime_UTR 45.0%
!!! CGATGCTTTATGGTTTTGGG+AGG - chr1_3:40558390-40558409 Msa0118250:intron 45.0%
! TTGTTGTTCCTAATGCTCCC+TGG - chr1_3:40558457-40558476 Msa0118250:intron 45.0%
!!! GGTTTTGAGAGCTTAGTCTC+TGG - chr1_3:40558608-40558627 Msa0118250:CDS 45.0%
TACAGGTCACCCTTTCTAGA+AGG - chr1_3:40558788-40558807 Msa0118250:intron 45.0%
! GTTCCATCGACCTTCTAGAA+AGG + chr1_3:40558801-40558820 None:intergenic 45.0%
AAGGTCGATGGAACTTTGAG+TGG - chr1_3:40558807-40558826 Msa0118250:intron 45.0%
CGATGGAACTTTGAGTGGTT+TGG - chr1_3:40558812-40558831 Msa0118250:intron 45.0%
!! AACTTTGAGTGGTTTGGTCC+CGG - chr1_3:40558818-40558837 Msa0118250:intron 45.0%
CTCAACCAAGTTAACTGTGG+AGG - chr1_3:40559470-40559489 Msa0118250:intron 45.0%
CAACCAAGTTAACTGTGGAG+GGG - chr1_3:40559472-40559491 Msa0118250:intron 45.0%
ACTCTGTCTTCCAAGACTGT+TGG + chr1_3:40559543-40559562 None:intergenic 45.0%
AGTGCACCTTTAAGCTGATC+TGG + chr1_3:40559567-40559586 None:intergenic 45.0%
! GATCAGCTTAAAGGTGCACT+TGG - chr1_3:40559567-40559586 Msa0118250:intron 45.0%
! AGAGCATCACGTAAAGGTAC+GGG + chr1_3:40559621-40559640 None:intergenic 45.0%
!! GAGAGCATCACGTAAAGGTA+CGG + chr1_3:40559622-40559641 None:intergenic 45.0%
CACCATGCGCTGCTAATATT+AGG - chr1_3:40559759-40559778 Msa0118250:intron 45.0%
! AAGTAACTTGTGGCTTAGCC+TGG - chr1_3:40559998-40560017 Msa0118250:intron 45.0%
AACGCATGTATGGTTGCAAC+TGG - chr1_3:40560433-40560452 Msa0118250:intron 45.0%
! GTTACACCTTTTGGTCATGC+TGG - chr1_3:40560532-40560551 Msa0118250:intron 45.0%
CATAACCCAGCATGACCAAA+AGG + chr1_3:40560541-40560560 None:intergenic 45.0%
CGTGACAGTGTAAGACTTTC+TGG + chr1_3:40560574-40560593 None:intergenic 45.0%
TCATCCAAACTGTGACAGTG+AGG + chr1_3:40560730-40560749 None:intergenic 45.0%
CTCGAGACCTATTAAACCCT+AGG + chr1_3:40560776-40560795 None:intergenic 45.0%
CTAGGGTTTAATAGGTCTCG+AGG - chr1_3:40560774-40560793 Msa0118250:intron 45.0%
AGGGTTTAATAGGTCTCGAG+GGG - chr1_3:40560776-40560795 Msa0118250:intron 45.0%
TTTAATAGGTCTCGAGGGGA+AGG - chr1_3:40560780-40560799 Msa0118250:intron 45.0%
!! AGCTGGATGAAAGTTCTAGG+TGG - chr1_3:40560927-40560946 Msa0118250:intron 45.0%
ATCTGGACTTGATTCTCCCA+GGG + chr1_3:40561268-40561287 None:intergenic 45.0%
AATCTGGACTTGATTCTCCC+AGG + chr1_3:40561269-40561288 None:intergenic 45.0%
! TGCACCTGCTGCTTATGCTA+AGG - chr1_3:40557596-40557615 Msa0118250:exon 50.0%
! CACCCTTTCTAGAAGGTCGA+TGG - chr1_3:40558795-40558814 Msa0118250:intron 50.0%
GGGGCCACTTAGAATGAAAG+AGG - chr1_3:40559491-40559510 Msa0118250:intron 50.0%
GCCCTAATATTAGCAGCGCA+TGG + chr1_3:40559764-40559783 None:intergenic 50.0%
CTTGATTCTCCCAGGGATGA+CGG + chr1_3:40561261-40561280 None:intergenic 50.0%
GCGTGGTTGTTGCAGAGCTA+TGG - chr1_3:40557557-40557576 Msa0118250:three_prime_UTR 55.0%
GCTGTTGTGTCCAGGTCTCT+TGG - chr1_3:40558414-40558433 Msa0118250:intron 55.0%
GTTGTGTCCAGGTCTCTTGG+TGG - chr1_3:40558417-40558436 Msa0118250:intron 55.0%
! TCCAGGTCTCTTGGTGGTTC+CGG - chr1_3:40558423-40558442 Msa0118250:intron 55.0%
!! TGGGAAGTCCAGGGAGCATT+AGG + chr1_3:40558468-40558487 None:intergenic 55.0%
AGCGGCTCAATCCAACACCT+CGG - chr1_3:40558684-40558703 Msa0118250:intron 55.0%
ATCCTAGCCGCAAACAACCC+TGG + chr1_3:40558848-40558867 None:intergenic 55.0%
TGGCCCCTCCACAGTTAACT+TGG + chr1_3:40559478-40559497 None:intergenic 55.0%
! GCTTAAAGGTGCACTTGGGC+AGG - chr1_3:40559572-40559591 Msa0118250:intron 55.0%
!! TCGGCGAGAGCATCACGTAA+AGG + chr1_3:40559627-40559646 None:intergenic 55.0%
TTACGTGATGCTCTCGCCGA+TGG - chr1_3:40559627-40559646 Msa0118250:intron 55.0%
TACGTGATGCTCTCGCCGAT+GGG - chr1_3:40559628-40559647 Msa0118250:intron 55.0%
TGGGAGGAGCTGTTGTGTCC+AGG - chr1_3:40558406-40558425 Msa0118250:intron 60.0%
ACCGGAACCACCAAGAGACC+TGG + chr1_3:40558427-40558446 None:intergenic 60.0%
TACGTTGTGGGCCGAGGTGT+TGG + chr1_3:40558698-40558717 None:intergenic 60.0%
GTCTCTTACGTTGTGGGCCG+AGG + chr1_3:40558704-40558723 None:intergenic 60.0%
GCAAACAACCCTGGAGAGCC+GGG + chr1_3:40558839-40558858 None:intergenic 60.0%
CGCAAACAACCCTGGAGAGC+CGG + chr1_3:40558840-40558859 None:intergenic 60.0%
CGGCTCTCCAGGGTTGTTTG+CGG - chr1_3:40558838-40558857 Msa0118250:intron 60.0%
CTCCAGGGTTGTTTGCGGCT+AGG - chr1_3:40558843-40558862 Msa0118250:intron 60.0%
GATGCATCGCCGTCATCCCT+GGG - chr1_3:40561249-40561268 Msa0118250:CDS 60.0%
CGCATCACGTGGCAGAAGCG+TGG - chr1_3:40557540-40557559 Msa0118250:three_prime_UTR 65.0%
!! TGGTTTGGTCCCGGCTCTCC+AGG - chr1_3:40558827-40558846 Msa0118250:intron 65.0%
! GGTTTGGTCCCGGCTCTCCA+GGG - chr1_3:40558828-40558847 Msa0118250:intron 65.0%
CGATGCATCGCCGTCATCCC+TGG - chr1_3:40561248-40561267 Msa0118250:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 40557308 40561595 40557308 ID=Msa0118250;Name=Msa0118250
chr1_3 mRNA 40557308 40561595 40557308 ID=Msa0118250-mRNA-1;Parent=Msa0118250;Name=Msa0118250-mRNA-1;_AED=0.13;_eAED=0.13;_QI=103|1|1|1|0.85|0.75|8|296|295
chr1_3 exon 40557308 40557699 40557308 ID=Msa0118250-mRNA-1:exon:12404;Parent=Msa0118250-mRNA-1
chr1_3 exon 40558586 40558638 40558586 ID=Msa0118250-mRNA-1:exon:12403;Parent=Msa0118250-mRNA-1
chr1_3 exon 40559237 40559453 40559237 ID=Msa0118250-mRNA-1:exon:12402;Parent=Msa0118250-mRNA-1
chr1_3 exon 40559797 40559893 40559797 ID=Msa0118250-mRNA-1:exon:12401;Parent=Msa0118250-mRNA-1
chr1_3 exon 40560027 40560110 40560027 ID=Msa0118250-mRNA-1:exon:12400;Parent=Msa0118250-mRNA-1
chr1_3 exon 40560189 40560310 40560189 ID=Msa0118250-mRNA-1:exon:12399;Parent=Msa0118250-mRNA-1
chr1_3 exon 40561244 40561483 40561244 ID=Msa0118250-mRNA-1:exon:12398;Parent=Msa0118250-mRNA-1
chr1_3 exon 40561514 40561595 40561514 ID=Msa0118250-mRNA-1:exon:12397;Parent=Msa0118250-mRNA-1
chr1_3 five_prime_UTR 40561514 40561595 40561514 ID=Msa0118250-mRNA-1:five_prime_utr;Parent=Msa0118250-mRNA-1
chr1_3 five_prime_UTR 40561463 40561483 40561463 ID=Msa0118250-mRNA-1:five_prime_utr;Parent=Msa0118250-mRNA-1
chr1_3 CDS 40561244 40561462 40561244 ID=Msa0118250-mRNA-1:cds;Parent=Msa0118250-mRNA-1
chr1_3 CDS 40560189 40560310 40560189 ID=Msa0118250-mRNA-1:cds;Parent=Msa0118250-mRNA-1
chr1_3 CDS 40560027 40560110 40560027 ID=Msa0118250-mRNA-1:cds;Parent=Msa0118250-mRNA-1
chr1_3 CDS 40559797 40559893 40559797 ID=Msa0118250-mRNA-1:cds;Parent=Msa0118250-mRNA-1
chr1_3 CDS 40559237 40559453 40559237 ID=Msa0118250-mRNA-1:cds;Parent=Msa0118250-mRNA-1
chr1_3 CDS 40558586 40558638 40558586 ID=Msa0118250-mRNA-1:cds;Parent=Msa0118250-mRNA-1
chr1_3 CDS 40557604 40557699 40557604 ID=Msa0118250-mRNA-1:cds;Parent=Msa0118250-mRNA-1
chr1_3 three_prime_UTR 40557308 40557603 40557308 ID=Msa0118250-mRNA-1:three_prime_utr;Parent=Msa0118250-mRNA-1
Gene Sequence

>Msa0118250

ATGGCTGTTTCTGTTTCTATTTCTGCTTCTCATCCTTGTATTTCAACAATCACAAATTGTTCAATCCCTTCATCTTCTTCATGGAAAGTTTCAACTTCACGCATCACGTGGCAGAAGCGTGGTTGTTGCAGAGCTATGGTTCAAGTTCAAACTGGTGCACCTGCTGCTTATGCTAAGGAAATGGAACGCCTTTCTGCTAAAGAATCGCTTCTTCTTGCTTTTAAGGATGCAGGTGGTTTTGAGAGCTTAGTCTCTGGGAAGACAACTGAATATCAAAGAATTGATGTGAATGAAAGGATAACTGGTCTTGAGCGGCTCAATCCAACACCTCGGCCCACAACGTCACCCTTTCTAGAAGGTCGATGGAACTTTGAGTGGTTTGGTCCCGGCTCTCCAGGGTTGTTTGCGGCTAGGATGATATTTGAGAATTTTCCTTCAAGTTTAGCTAATTTGTCAAAAATGGATGTCTTTATCAAGGATGGAAATGCAAAGATTAGCGCAAACACATTATTTTTAAACTCGATAGAAAGCAGAATTATTCTCTCAACCAAGTTAACTGTGGAGGGGCCACTTAGAATGAAAGAGGAGTATGTGGAAGGGATTATTGTGTCACCAACAGTCTTGGAAGACAGAGTACCAGATCAGCTTAAAGGTGCACTTGGGCAGGCAGTTAATGTTTTACAACAGCTTCCCGTACCTTTACGTGATGCTCTCGCCGATGGGCTAAAAGTTCCACTAAGTGGAAGCTTTCAAAGACTCTTCATGATTTCTTATCTCGATGAGGAGATACTTATAATAAGGAACACAGCTGGGATACCAGAAGTTTTAACGAGACTCGATGCATCGCCGTCATCCCTGGGAGAATCAAGTCCAGATTATGAAAGCTAG

Protein sequence

>Msa0118250

MAVSVSISASHPCISTITNCSIPSSSSWKVSTSRITWQKRGCCRAMVQVQTGAPAAYAKEMERLSAKESLLLAFKDAGGFESLVSGKTTEYQRIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGPGSPGLFAARMIFENFPSSLANLSKMDVFIKDGNAKISANTLFLNSIESRIILSTKLTVEGPLRMKEEYVEGIIVSPTVLEDRVPDQLKGALGQAVNVLQQLPVPLRDALADGLKVPLSGSFQRLFMISYLDEEILIIRNTAGIPEVLTRLDASPSSLGESSPDYES*