AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0598610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598610 MtrunA17_Chr4g0022401 97.073 410 10 1 1 408 1 410 0.0 828
Msa0598610 MtrunA17_Chr7g0275471 46.978 579 282 6 17 580 9 577 0.0 554
Msa0598610 MtrunA17_Chr8g0347381 45.078 579 288 8 17 579 9 573 2.73e-179 518
Msa0598610 MtrunA17_Chr8g0347421 45.391 575 285 8 17 576 9 569 4.87e-177 513
Msa0598610 MtrunA17_Chr8g0347391 44.905 579 290 8 17 580 16 580 2.26e-176 511
Msa0598610 MtrunA17_Chr8g0347431 46.348 397 191 5 199 579 9 399 2.00e-131 390
Msa0598610 MtrunA17_Chr4g0022391 98.844 173 2 0 408 580 13 185 9.52e-122 357
Msa0598610 MtrunA17_Chr8g0361551 33.106 586 355 7 19 578 15 589 8.83e-115 354
Msa0598610 MtrunA17_Chr5g0421331 32.746 568 347 6 22 573 23 571 1.39e-112 348
Msa0598610 MtrunA17_Chr2g0318991 33.106 586 352 10 22 578 17 591 8.36e-111 344
Msa0598610 MtrunA17_Chr5g0401641 31.763 573 357 6 22 573 24 583 6.23e-108 336
Msa0598610 MtrunA17_Chr1g0195771 33.739 575 329 12 19 558 54 611 1.24e-105 332
Msa0598610 MtrunA17_Chr4g0023301 34.677 496 292 8 107 579 6 492 1.47e-102 319
Msa0598610 MtrunA17_Chr7g0259291 29.813 587 360 18 19 572 5 572 9.32e-78 257
Msa0598610 MtrunA17_Chr5g0401631 32.880 368 233 5 216 573 2 365 1.21e-72 238
Msa0598610 MtrunA17_Chr8g0352391 37.829 304 150 4 279 580 4 270 1.90e-70 228
Msa0598610 MtrunA17_Chr1g0169871 49.425 174 75 1 338 498 141 314 1.69e-49 175
Msa0598610 MtrunA17_Chr7g0259401 29.134 254 145 7 156 407 10 230 4.69e-31 121
Msa0598610 MtrunA17_Chr8g0347441 36.641 131 76 2 17 147 9 132 5.86e-23 94.7
Msa0598610 MtrunA17_Chr8g0352401 38.168 131 74 2 19 149 2 125 4.18e-20 86.7
Msa0598610 MtrunA17_Chr5g0401621 30.519 154 100 1 20 173 22 168 6.24e-17 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598610 AT4G03400.2 65.358 586 182 5 15 580 5 589 0.0 796
Msa0598610 AT4G03400.1 65.358 586 182 5 15 580 5 589 0.0 796
Msa0598610 AT2G46370.4 45.250 579 289 5 17 580 20 585 0.0 541
Msa0598610 AT2G46370.1 45.250 579 289 5 17 580 9 574 0.0 540
Msa0598610 AT2G46370.2 45.250 579 289 5 17 580 9 574 0.0 540
Msa0598610 AT2G46370.3 47.505 501 240 4 95 580 3 495 2.07e-173 501
Msa0598610 AT4G37390.1 33.101 574 351 8 22 573 24 586 1.10e-117 362
Msa0598610 AT1G28130.1 33.059 608 356 10 7 578 4 596 3.99e-116 358
Msa0598610 AT4G27260.1 33.105 583 353 8 22 578 25 596 4.53e-113 350
Msa0598610 AT1G59500.1 34.031 573 341 9 22 573 24 580 1.07e-112 349
Msa0598610 AT2G23170.1 32.517 572 350 10 22 573 23 578 1.34e-110 343
Msa0598610 AT5G54510.1 32.253 586 360 7 19 578 22 596 1.40e-110 344
Msa0598610 AT2G14960.1 32.264 561 360 7 22 573 23 572 1.44e-107 335
Msa0598610 AT5G13320.3 32.984 573 352 10 25 578 15 574 4.10e-105 328
Msa0598610 AT5G13320.1 32.984 573 352 10 25 578 15 574 4.10e-105 328
Msa0598610 AT5G13320.2 32.984 573 352 10 25 578 30 589 7.28e-105 328
Msa0598610 AT1G48660.2 31.053 570 366 7 25 578 10 568 3.04e-104 326
Msa0598610 AT1G48660.1 31.162 568 365 7 25 578 10 565 8.96e-104 325
Msa0598610 AT1G23160.1 32.762 583 342 11 25 579 18 578 3.86e-103 323
Msa0598610 AT5G13350.1 31.525 590 360 12 16 578 8 580 5.62e-102 321
Msa0598610 AT5G13350.2 31.525 590 360 12 16 578 8 580 5.62e-102 321
Msa0598610 AT5G13360.1 32.034 590 356 11 16 578 8 579 9.13e-101 318
Msa0598610 AT5G13360.2 32.034 590 356 11 16 578 8 579 9.13e-101 318
Msa0598610 AT5G13360.3 32.034 590 356 11 16 578 86 657 6.88e-100 318
Msa0598610 AT2G47750.1 31.229 586 364 12 17 578 7 577 1.05e-99 315
Msa0598610 AT5G13370.1 32.143 588 347 14 22 578 14 580 3.71e-98 311
Msa0598610 AT5G51470.1 32.258 558 354 5 25 569 16 562 6.18e-98 310
Msa0598610 AT5G13380.1 30.782 588 354 12 22 578 44 609 1.35e-91 295
Msa0598610 AT1G28130.2 34.676 447 252 8 168 578 11 453 1.60e-89 285
Msa0598610 AT1G48670.2 34.878 410 246 8 185 578 2 406 2.48e-85 272
Msa0598610 AT1G48670.1 29.247 571 323 14 25 578 11 517 2.22e-84 273
Msa0598610 AT5G51470.2 32.979 470 299 4 113 569 6 472 1.96e-81 264
Msa0598610 AT1G48690.1 29.167 192 125 2 25 216 10 190 1.30e-17 81.6

Find 127 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCCTCCTTCCCTTAT+TGG 0.088269 4_2:+35640918 None:intergenic
CTGCATATAAAGTTCAATTT+TGG 0.088571 4_2:+35637020 None:intergenic
AAAATTGAGAGAGGCTATTT+TGG 0.167851 4_2:-35640556 Msa0598610:CDS
AAAATAGCCTCTCTCAATTT+TGG 0.172918 4_2:+35640558 None:intergenic
ACTTCTTCTGGTGGCAAAAT+AGG 0.187121 4_2:+35640294 None:intergenic
AGGGACTTTCAAGAAGATTT+TGG 0.198041 4_2:-35636694 Msa0598610:CDS
GCCACTTGAACTTTGCATTT+TGG 0.203128 4_2:-35636721 Msa0598610:CDS
TTTGCAGAGTTTATCCAATA+AGG 0.224019 4_2:-35640932 Msa0598610:intron
AATAAGTCCAAACACAAATT+TGG 0.225655 4_2:-35640529 Msa0598610:CDS
TTAACATTTGGCCAAATCTT+TGG 0.226975 4_2:+35640447 None:intergenic
TAGTTTGATTAGACAAATTT+AGG 0.228129 4_2:+35643830 None:intergenic
GTTATTTACTGGGAGATTAA+AGG 0.230982 4_2:-35636843 Msa0598610:CDS
GACAATATGTGGATTGTTTA+TGG 0.232670 4_2:+35640736 None:intergenic
TTGACACTTATACCATAAAA+AGG 0.248016 4_2:-35636590 Msa0598610:CDS
GGAATCCCTTTACACTTCTT+TGG 0.256794 4_2:-35643569 Msa0598610:CDS
ACATATTGTCACCTCCTTCT+TGG 0.270579 4_2:-35640723 Msa0598610:CDS
TGCACCTAGGAGTCTTAAAT+TGG 0.272433 4_2:+35636640 None:intergenic
CTGGTCACTACGTTATTTAC+TGG 0.272776 4_2:-35636854 Msa0598610:CDS
TTGGTTTGATTCCAAAGATT+TGG 0.301493 4_2:-35640458 Msa0598610:CDS
GCTAGTAAAATCAACAATTT+CGG 0.308582 4_2:+35636899 None:intergenic
CCTTTGATTAGTGCTGATTA+TGG 0.311269 4_2:-35640351 Msa0598610:CDS
GAGCCTACTAATAATGAATA+TGG 0.323733 4_2:+35643878 None:intergenic
ACAGCAAATGTAACTTCTTC+TGG 0.332953 4_2:+35640282 None:intergenic
TTTGAAGCCAAATTTGTGTT+TGG 0.346442 4_2:+35640522 None:intergenic
TTGGATAATTTCATAGCAAA+TGG 0.352160 4_2:-35636675 Msa0598610:CDS
GCATATAAGTACTTAACATT+TGG 0.354805 4_2:+35640435 None:intergenic
ATAATCTTGGACAATGGAAT+TGG 0.356851 4_2:+35640177 None:intergenic
CTTAAGGAAAGAGTGGTTAT+AGG 0.357105 4_2:+35643463 None:intergenic
GGATTACAATATATTCGATA+TGG 0.361372 4_2:-35643605 Msa0598610:CDS
GAATATCTCAAGAAATGGTT+AGG 0.367643 4_2:-35643628 Msa0598610:CDS
AAACTTAGACATTATGCAAA+TGG 0.367702 4_2:-35640378 Msa0598610:CDS
CTATAACCACTCTTTCCTTA+AGG 0.386150 4_2:-35643462 Msa0598610:intron
CTAGAGAAAGTTGATTGGTT+TGG 0.388971 4_2:-35640477 Msa0598610:CDS
TACTAATAATGAATATGGTT+TGG 0.393866 4_2:+35643883 None:intergenic
TTGCAGAGTTTATCCAATAA+GGG 0.407774 4_2:-35640931 Msa0598610:intron
AAACCATATTCATTATTAGT+AGG 0.418127 4_2:-35643881 Msa0598610:five_prime_UTR
CTGAGAAGTGTTGGTTCCAT+TGG 0.419789 4_2:+35643781 None:intergenic
CCATTGTCCAAGATTATAGT+AGG 0.419799 4_2:-35640171 Msa0598610:CDS
TGGATAATTTCATAGCAAAT+GGG 0.420226 4_2:-35636674 Msa0598610:CDS
AAATCAGCATGTGAAGCAAT+AGG 0.420636 4_2:+35643544 None:intergenic
TGATGATTGTTGCAGAGAAA+TGG 0.425098 4_2:-35636799 Msa0598610:CDS
CTGTTGTCCTACTATAATCT+TGG 0.439515 4_2:+35640164 None:intergenic
ACTATGAAAACATTATTAGT+TGG 0.441413 4_2:-35643729 Msa0598610:CDS
GTGTGGAATATCTCAAGAAA+TGG 0.451140 4_2:-35643633 Msa0598610:CDS
AGGAACCAAAGAAGTGTAAA+GGG 0.454924 4_2:+35643564 None:intergenic
AACTTAGACATTATGCAAAT+GGG 0.457425 4_2:-35640377 Msa0598610:CDS
AGGGTTCTTGAATTCATATA+CGG 0.463184 4_2:-35640900 Msa0598610:CDS
AGCAACTGTTTCAAAACAAA+AGG 0.464090 4_2:-35640876 Msa0598610:CDS
TACTTATATGCAATAATGAC+AGG 0.466249 4_2:-35640423 Msa0598610:CDS
AGGAGCTAGAGAAAGTTGAT+TGG 0.466252 4_2:-35640482 Msa0598610:CDS
TTGAGCACTATGTCGGGTAA+AGG 0.468379 4_2:+35642813 None:intergenic
CTCTCTCTACCACTAGTTGA+AGG 0.468806 4_2:+35636949 None:intergenic
TTCTCTCCAATGTTCTTCAA+AGG 0.473269 4_2:+35640629 None:intergenic
ATTATGGTTCAACTGAAAGC+TGG 0.474922 4_2:-35640335 Msa0598610:CDS
ATAGGTTGTTGAGTGAGTAA+AGG 0.478480 4_2:+35643481 None:intergenic
TGAACCAATTTAAGACTCCT+AGG 0.482138 4_2:-35636644 Msa0598610:CDS
TCGGAAATTCTCTGAATGAA+TGG 0.484621 4_2:+35643517 None:intergenic
CACTGAAAATCACTTCTTGA+GGG 0.485723 4_2:+35640763 None:intergenic
TAGGAACCAAAGAAGTGTAA+AGG 0.493158 4_2:+35643563 None:intergenic
GGAGATGTGGTAGAAGTGTC+AGG 0.498436 4_2:-35637059 Msa0598610:CDS
AGCTACAACAGCAATGGTTG+TGG 0.498704 4_2:-35643760 Msa0598610:CDS
CAGAGTAGAAGAGGCCAAGA+AGG 0.500086 4_2:+35640709 None:intergenic
AAGAAGGAGGTGACAATATG+TGG 0.502219 4_2:+35640725 None:intergenic
AATTTGGCTTCAAAATTACA+AGG 0.505896 4_2:-35640513 Msa0598610:CDS
AATATCTCAAGAAATGGTTA+GGG 0.508183 4_2:-35643627 Msa0598610:CDS
GAACTCAAAGTAAGAGAATG+TGG 0.508691 4_2:+35640254 None:intergenic
ATCCAATAAGGGAAGGAGGA+AGG 0.508750 4_2:-35640920 Msa0598610:CDS
TCCAATAAGGGAAGGAGGAA+GGG 0.513464 4_2:-35640919 Msa0598610:CDS
AAGTGTCAGGATTTCACAAT+GGG 0.514165 4_2:-35637046 Msa0598610:CDS
GGGTTATACAGGTGCAGACT+AGG 0.516374 4_2:-35637080 Msa0598610:intron
TGCAGTTCTGGAACCACAGA+GGG 0.523265 4_2:-35642853 Msa0598610:intron
TGAGCACTATGTCGGGTAAA+GGG 0.525938 4_2:+35642814 None:intergenic
CGATATGGAACCATGTGCAT+TGG 0.527431 4_2:-35643590 Msa0598610:CDS
CGTGGTTTGAGCACTATGTC+GGG 0.529475 4_2:+35642807 None:intergenic
TCTTGTTTATTTCTATGAAG+AGG 0.529588 4_2:+35640228 None:intergenic
ATCCATGATCAGCAAAAGAT+AGG 0.531768 4_2:+35636775 None:intergenic
TATCAGCAGCATATAGATCA+AGG 0.536272 4_2:-35642768 Msa0598610:intron
TCACCACCTTTGAAGAACAT+TGG 0.538044 4_2:-35640635 Msa0598610:CDS
TCTCCAATGTTCTTCAAAGG+TGG 0.539352 4_2:+35640632 None:intergenic
TCCAAAATGCAAAGTTCAAG+TGG 0.541118 4_2:+35636720 None:intergenic
CTACTTGATCAGAGTAGAAG+AGG 0.541894 4_2:+35640700 None:intergenic
GCGTGGTTTGAGCACTATGT+CGG 0.549957 4_2:+35642806 None:intergenic
GGTTCAACTGAAAGCTGGAT+TGG 0.550604 4_2:-35640330 Msa0598610:CDS
GTTGGTTCGAAGATGTGTCT+AGG 0.559280 4_2:-35643711 Msa0598610:CDS
TGGTCACTACGTTATTTACT+GGG 0.562828 4_2:-35636853 Msa0598610:CDS
CTGTTGTAGCTGAGAAGTGT+TGG 0.566243 4_2:+35643772 None:intergenic
CCTACTATAATCTTGGACAA+TGG 0.566836 4_2:+35640171 None:intergenic
AGAATGTTGAGAAGAAGCAA+AGG 0.569022 4_2:+35643856 None:intergenic
AACAAAAGGAAATTTAACAG+TGG 0.573015 4_2:-35640862 Msa0598610:CDS
ACAAAAGGAAATTTAACAGT+GGG 0.579232 4_2:-35640861 Msa0598610:CDS
CCACTGAAAATCACTTCTTG+AGG 0.583439 4_2:+35640762 None:intergenic
GTTTATCCAATAAGGGAAGG+AGG 0.586787 4_2:-35640924 Msa0598610:CDS
TTACTGGGAGATTAAAGGAG+AGG 0.590174 4_2:-35636838 Msa0598610:CDS
TTAACATACACATATTCCAA+TGG 0.599208 4_2:-35643797 Msa0598610:exon
CCATAATCAGCACTAATCAA+AGG 0.602203 4_2:+35640351 None:intergenic
CAGTAAATAACGTAGTGACC+AGG 0.605471 4_2:+35636855 None:intergenic
AGGTGACCTTAAGGAAAGAG+TGG 0.609816 4_2:+35643456 None:intergenic
GGATAATTTCATAGCAAATG+GGG 0.610908 4_2:-35636673 Msa0598610:CDS
AGAGTTTATCCAATAAGGGA+AGG 0.613843 4_2:-35640927 Msa0598610:CDS
TAAAGTGAATATTTGAAGCG+TGG 0.617745 4_2:+35642789 None:intergenic
ATTTGTAATGACATTAGACA+TGG 0.619879 4_2:-35640606 Msa0598610:CDS
TCTGAAACAAAACCATGGTG+TGG 0.619947 4_2:-35643650 Msa0598610:CDS
AGTAGAAGAGGCCAAGAAGG+AGG 0.620885 4_2:+35640712 None:intergenic
TTCATTCAGAGAATTTCCGA+TGG 0.622534 4_2:-35643514 Msa0598610:CDS
CAGGTGCAGACTAGGAGATG+TGG 0.622806 4_2:-35637072 Msa0598610:CDS
AACTCAAAGTAAGAGAATGT+GGG 0.623136 4_2:+35640255 None:intergenic
GAATTTCTGCCTCCCCTCTG+TGG 0.624902 4_2:+35642840 None:intergenic
TAAAGGAGCAGTGTCACCAT+CGG 0.631135 4_2:+35643498 None:intergenic
GCAGATGTAACTAATGAACC+TGG 0.631349 4_2:-35636873 Msa0598610:CDS
AAAATTACAAGGCTATTGTG+AGG 0.634297 4_2:-35640502 Msa0598610:CDS
TCTTGAGATATTCCACACCA+TGG 0.638732 4_2:+35643638 None:intergenic
CTTCTCAGCTACAACAGCAA+TGG 0.638821 4_2:-35643766 Msa0598610:CDS
TAAGTCACCAAAATTGAGAG+AGG 0.640371 4_2:-35640565 Msa0598610:CDS
GAAGTGTCAGGATTTCACAA+TGG 0.640985 4_2:-35637047 Msa0598610:CDS
AGAGAAGGACCTTCAACTAG+TGG 0.647323 4_2:-35636958 Msa0598610:CDS
GCAAATGTAACTTCTTCTGG+TGG 0.654228 4_2:+35640285 None:intergenic
GTTCTGGAACCACAGAGGGG+AGG 0.654673 4_2:-35642849 Msa0598610:CDS
GAAGATGTGTCTAGGAACAC+AGG 0.656944 4_2:-35643703 Msa0598610:CDS
CTTCAACTAGTGGTAGAGAG+AGG 0.670697 4_2:-35636948 Msa0598610:CDS
TAAAGGGATTCCAATGCACA+TGG 0.676339 4_2:+35643580 None:intergenic
AATATTCTGAAACAAAACCA+TGG 0.689332 4_2:-35643655 Msa0598610:CDS
ACATGATTGTTAGTGCACCT+AGG 0.701373 4_2:+35636627 None:intergenic
TTGCAGTTCTGGAACCACAG+AGG 0.703020 4_2:-35642854 Msa0598610:intron
ATATCTCAAGAAATGGTTAG+GGG 0.711051 4_2:-35643626 Msa0598610:CDS
CATGCTATAGACAAAAGCTG+AGG 0.714203 4_2:+35640668 None:intergenic
ACTTATATGCAATAATGACA+GGG 0.716264 4_2:-35640422 Msa0598610:CDS
GCAGTTCTGGAACCACAGAG+GGG 0.716358 4_2:-35642852 Msa0598610:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTAAATTTTTAAAAA+TGG - chr4_2:35640946-35640965 Msa0598610:intron 0.0%
!! TATTATTTAAAAATTAATAA+AGG + chr4_2:35642907-35642926 None:intergenic 0.0%
!!! ACTTTTTTTTTTTTCTATTT+CGG + chr4_2:35637153-35637172 None:intergenic 10.0%
!!! TCATTAGATTTTTTTTTTTT+TGG - chr4_2:35637181-35637200 Msa0598610:intron 10.0%
!!! ATATATTTTTTTGGTATATA+TGG - chr4_2:35637256-35637275 Msa0598610:intron 10.0%
!!! TTTAATTTTAATATTTTGTG+TGG - chr4_2:35637514-35637533 Msa0598610:intron 10.0%
!!! TATATTTTAAAAAATTTGTG+CGG + chr4_2:35637749-35637768 None:intergenic 10.0%
!!! AACAAATAAATCATTTTTTT+AGG - chr4_2:35637794-35637813 Msa0598610:intron 10.0%
!!! TTAAATGTAGTTATTTTTTA+CGG - chr4_2:35638204-35638223 Msa0598610:intron 10.0%
!!! TTATATATATTTAACACTTT+TGG + chr4_2:35638624-35638643 None:intergenic 10.0%
!! AATCATAATAAATACTTATA+AGG + chr4_2:35641630-35641649 None:intergenic 10.0%
!! TTCAAAAAAGTAAAAATAAA+TGG - chr4_2:35643161-35643180 Msa0598610:intron 10.0%
!!! TTTAAAAATTTTAAACTTAC+AGG - chr4_2:35643298-35643317 Msa0598610:intron 10.0%
!!! TTAAAAATTTTAAACTTACA+GGG - chr4_2:35643299-35643318 Msa0598610:intron 10.0%
!!! TACACATTAGATTTTTTTTA+AGG - chr4_2:35637205-35637224 Msa0598610:intron 15.0%
!!! ACACATTAGATTTTTTTTAA+GGG - chr4_2:35637206-35637225 Msa0598610:intron 15.0%
!! ATATATCCCTAAAAATAAAT+TGG - chr4_2:35637316-35637335 Msa0598610:intron 15.0%
!!! ATATCACCAATTTATTTTTA+GGG + chr4_2:35637325-35637344 None:intergenic 15.0%
!!! TATATCACCAATTTATTTTT+AGG + chr4_2:35637326-35637345 None:intergenic 15.0%
!!! ATGAGTTTTAATTATATTTG+TGG - chr4_2:35637429-35637448 Msa0598610:intron 15.0%
!! CTTGATAAAAAAAATATGTA+AGG + chr4_2:35638795-35638814 None:intergenic 15.0%
!! AAAATGAATCTTAAGTATAT+TGG + chr4_2:35639054-35639073 None:intergenic 15.0%
!! AAATTAAGTAAAAGTTTGTA+TGG + chr4_2:35639230-35639249 None:intergenic 15.0%
!! TATTTAATAAATGATGTATG+TGG - chr4_2:35640360-35640379 Msa0598610:CDS 15.0%
!! ATAAAATAAAATACTTTCTC+TGG + chr4_2:35640455-35640474 None:intergenic 15.0%
!!! TTTAGAATTGTAGTTAAATA+GGG + chr4_2:35640712-35640731 None:intergenic 15.0%
!!! ACATTAACTCTTTTTATATA+TGG + chr4_2:35641658-35641677 None:intergenic 15.0%
!!! TGATGATTTTGATAAATATT+CGG + chr4_2:35641887-35641906 None:intergenic 15.0%
!!! TTGAATTTTATTATTCAAAG+TGG - chr4_2:35641987-35642006 Msa0598610:intron 15.0%
!!! ATCATTTATTCTTTTGATTA+GGG + chr4_2:35642144-35642163 None:intergenic 15.0%
!! ATGATGAAAAAAAAAGATAA+AGG - chr4_2:35642159-35642178 Msa0598610:intron 15.0%
!!! AAAAGATGTAATTTTAGAAA+AGG - chr4_2:35642185-35642204 Msa0598610:intron 15.0%
!!! TGATTTGAATTTTTCTTTTA+AGG + chr4_2:35642272-35642291 None:intergenic 15.0%
!!! TTAATATCCCAATTTTAATA+TGG - chr4_2:35642499-35642518 Msa0598610:intron 15.0%
!!! TAATATCCCAATTTTAATAT+GGG - chr4_2:35642500-35642519 Msa0598610:intron 15.0%
!!! TTGATTTAATTTAGAATGAT+TGG + chr4_2:35642749-35642768 None:intergenic 15.0%
!! TTTGATAAGATAGTTTATAT+CGG + chr4_2:35642795-35642814 None:intergenic 15.0%
!!! GTTTATCTTTATCTAATTTT+TGG - chr4_2:35642931-35642950 Msa0598610:intron 15.0%
!! GTAATATTTCCTTAATTTAA+TGG - chr4_2:35643887-35643906 Msa0598610:five_prime_UTR 15.0%
!! TACTAATAATGAATATGGTT+TGG + chr4_2:35636519-35636538 None:intergenic 20.0%
!! AAACCATATTCATTATTAGT+AGG - chr4_2:35636518-35636537 Msa0598610:intron 20.0%
!! TAGTTTGATTAGACAAATTT+AGG + chr4_2:35636572-35636591 None:intergenic 20.0%
!! ACTATGAAAACATTATTAGT+TGG - chr4_2:35636670-35636689 Msa0598610:CDS 20.0%
!!! ATTCTTATCTTTTTCTCTTT+TGG - chr4_2:35636982-35637001 Msa0598610:CDS 20.0%
!!! AAAGTCGTCATATATTTTTT+TGG - chr4_2:35637247-35637266 Msa0598610:intron 20.0%
!!! ATGTATTTCTTTTACTTACA+TGG + chr4_2:35637393-35637412 None:intergenic 20.0%
!! TAAGTAAAAGAAATACATCA+TGG - chr4_2:35637395-35637414 Msa0598610:intron 20.0%
!! ATTATATTTGTGGAAAGATA+TGG - chr4_2:35637439-35637458 Msa0598610:intron 20.0%
!! TACTGTTCTATCTTATAATT+TGG - chr4_2:35637718-35637737 Msa0598610:intron 20.0%
!!! TATTTTTTACGGAAAGTTAA+TGG - chr4_2:35638215-35638234 Msa0598610:intron 20.0%
!! TACTCAAAATTGAGAAATAT+AGG + chr4_2:35638289-35638308 None:intergenic 20.0%
!!! TTCTCAATTTTGAGTATAAA+TGG - chr4_2:35638293-35638312 Msa0598610:intron 20.0%
!!! ATAGACATTTTGTAAAAGTA+TGG - chr4_2:35638661-35638680 Msa0598610:intron 20.0%
!! AACAAATGACAAAAAATTCA+AGG + chr4_2:35638868-35638887 None:intergenic 20.0%
!! TGACAAACTAGTATTAATAT+CGG + chr4_2:35638994-35639013 None:intergenic 20.0%
!!! CTTTTTTTTTCTTCAGTTTT+TGG - chr4_2:35639095-35639114 Msa0598610:intron 20.0%
!!! AAATCTTGTATTTTCATTAG+AGG - chr4_2:35639312-35639331 Msa0598610:intron 20.0%
!! CCATGTTCAAATATTAAAAA+TGG + chr4_2:35639338-35639357 None:intergenic 20.0%
!!! CCATTTTTAATATTTGAACA+TGG - chr4_2:35639335-35639354 Msa0598610:intron 20.0%
!!! TGCAAAAAGTTATTTCAATT+CGG + chr4_2:35639453-35639472 None:intergenic 20.0%
!!! TGTCTAAGTTTTTTCAAATA+TGG + chr4_2:35640012-35640031 None:intergenic 20.0%
!!! ACTTTAATTTGACGTATATA+GGG - chr4_2:35640651-35640670 Msa0598610:CDS 20.0%
!!! GTTTAGAATTGTAGTTAAAT+AGG + chr4_2:35640713-35640732 None:intergenic 20.0%
!! TATGTGAAATAAGTATGTTA+AGG - chr4_2:35641337-35641356 Msa0598610:intron 20.0%
!!! ATTTGAAATGCATTTGTTAA+TGG + chr4_2:35641813-35641832 None:intergenic 20.0%
!! TGCATTTCAAATATTGTTTA+AGG - chr4_2:35641821-35641840 Msa0598610:intron 20.0%
!!! CATTTGTTAGTCAAAATATT+TGG + chr4_2:35641860-35641879 None:intergenic 20.0%
!!! CATCATTTATTCTTTTGATT+AGG + chr4_2:35642145-35642164 None:intergenic 20.0%
!! TTTGATTCACATTATTGTTA+CGG - chr4_2:35642436-35642455 Msa0598610:intron 20.0%
!! ACATATCCCATATTAAAATT+GGG + chr4_2:35642509-35642528 None:intergenic 20.0%
!! AACATATCCCATATTAAAAT+TGG + chr4_2:35642510-35642529 None:intergenic 20.0%
!! ATATGTTAAATTGTGTTTGT+AGG - chr4_2:35642523-35642542 Msa0598610:intron 20.0%
!! TATGTTAAATTGTGTTTGTA+GGG - chr4_2:35642524-35642543 Msa0598610:intron 20.0%
!! AGAATGATTGGTAAAATTAA+CGG + chr4_2:35642737-35642756 None:intergenic 20.0%
!! ACTCTTTGACAAAATAAATA+GGG + chr4_2:35642821-35642840 None:intergenic 20.0%
!!! ACGATTGAGATATTTATTTT+TGG + chr4_2:35642977-35642996 None:intergenic 20.0%
!!! ATTTTAGAGGAAAAAATACT+TGG + chr4_2:35643246-35643265 None:intergenic 20.0%
!!! TGCATATAAAGTTCAATTTT+GGG + chr4_2:35643381-35643400 None:intergenic 20.0%
!! TCAAGAAAAACAAATTCAAT+TGG - chr4_2:35643655-35643674 Msa0598610:CDS 20.0%
!! CAAGAAAAACAAATTCAATT+GGG - chr4_2:35643656-35643675 Msa0598610:CDS 20.0%
!! CTGAAAAATCCATTAAATTA+AGG + chr4_2:35643899-35643918 None:intergenic 20.0%
!!! CTTAATTTAATGGATTTTTC+AGG - chr4_2:35643897-35643916 Msa0598610:five_prime_UTR 20.0%
! TTAACATACACATATTCCAA+TGG - chr4_2:35636602-35636621 Msa0598610:CDS 25.0%
!!! AATATTCTGAAACAAAACCA+TGG - chr4_2:35636744-35636763 Msa0598610:CDS 25.0%
! AATATCTCAAGAAATGGTTA+GGG - chr4_2:35636772-35636791 Msa0598610:CDS 25.0%
! GGATTACAATATATTCGATA+TGG - chr4_2:35636794-35636813 Msa0598610:CDS 25.0%
! GAATGAAAATTGCACATAAA+AGG + chr4_2:35636966-35636985 None:intergenic 25.0%
! AGTGAATATCTCTCTATATT+TGG - chr4_2:35637027-35637046 Msa0598610:CDS 25.0%
! AGTTTGATTGTGTGTAATTT+AGG - chr4_2:35637060-35637079 Msa0598610:CDS 25.0%
!! ATTTCTTTTACTTACATGGA+TGG + chr4_2:35637389-35637408 None:intergenic 25.0%
! ATTTCTTCTACCACATTAAT+TGG - chr4_2:35637485-35637504 Msa0598610:intron 25.0%
! TAAATTGCATCCAATTAATG+TGG + chr4_2:35637498-35637517 None:intergenic 25.0%
!! TTTAATATTTTGTGTGGTGT+TGG - chr4_2:35637520-35637539 Msa0598610:intron 25.0%
!!! ATTGATGTTTTAGAAATGCA+AGG + chr4_2:35637956-35637975 None:intergenic 25.0%
! GTCAAACAAATATTGCTAAA+TGG - chr4_2:35638398-35638417 Msa0598610:intron 25.0%
! TTAAGCTTATCATTCTTAAG+AGG + chr4_2:35638451-35638470 None:intergenic 25.0%
!!! TTCATTGAGCTCAAATTTTT+TGG + chr4_2:35638501-35638520 None:intergenic 25.0%
!! GTAATCGAGACTTTTATATT+TGG + chr4_2:35638755-35638774 None:intergenic 25.0%
! CGATTACATAAACAACTATT+AGG - chr4_2:35638768-35638787 Msa0598610:intron 25.0%
!! GGTATATAATAGTTTTCTAC+AGG + chr4_2:35638847-35638866 None:intergenic 25.0%
! GACAAACTAGTATTAATATC+GGG + chr4_2:35638993-35639012 None:intergenic 25.0%
!! AATGTATAAGACCTTTTCAA+TGG + chr4_2:35639423-35639442 None:intergenic 25.0%
! AACAAAAGGAAATTTAACAG+TGG - chr4_2:35639537-35639556 Msa0598610:intron 25.0%
! ACAAAAGGAAATTTAACAGT+GGG - chr4_2:35639538-35639557 Msa0598610:intron 25.0%
! ATTTGTAATGACATTAGACA+TGG - chr4_2:35639793-35639812 Msa0598610:intron 25.0%
! AATAAGTCCAAACACAAATT+TGG - chr4_2:35639870-35639889 Msa0598610:intron 25.0%
!! AATTTGGCTTCAAAATTACA+AGG - chr4_2:35639886-35639905 Msa0598610:intron 25.0%
! GCATATAAGTACTTAACATT+TGG + chr4_2:35639967-35639986 None:intergenic 25.0%
! TACTTATATGCAATAATGAC+AGG - chr4_2:35639976-35639995 Msa0598610:intron 25.0%
! ACTTATATGCAATAATGACA+GGG - chr4_2:35639977-35639996 Msa0598610:intron 25.0%
! AAACTTAGACATTATGCAAA+TGG - chr4_2:35640021-35640040 Msa0598610:intron 25.0%
! AACTTAGACATTATGCAAAT+GGG - chr4_2:35640022-35640041 Msa0598610:intron 25.0%
!!! TCTTGTTTATTTCTATGAAG+AGG + chr4_2:35640174-35640193 None:intergenic 25.0%
!!! TAAGCAAAAGTTGACTTTTT+CGG - chr4_2:35640335-35640354 Msa0598610:CDS 25.0%
! GAGAAAACCATTGAATAATT+AGG - chr4_2:35640563-35640582 Msa0598610:CDS 25.0%
! ATATGGTCCTAATTATTCAA+TGG + chr4_2:35640573-35640592 None:intergenic 25.0%
! TTAAAGTCATATTACATCCT+AGG + chr4_2:35640638-35640657 None:intergenic 25.0%
!!! GACTTTAATTTGACGTATAT+AGG - chr4_2:35640650-35640669 Msa0598610:CDS 25.0%
! ATTTAAACTGCTATTACTAC+TGG - chr4_2:35640736-35640755 Msa0598610:CDS 25.0%
! AAATTAGATACACTACTCAA+TGG - chr4_2:35640780-35640799 Msa0598610:CDS 25.0%
!!! TTTTGAAGTAGAAAACTATG+TGG - chr4_2:35641312-35641331 Msa0598610:intron 25.0%
! AGGATTAACAAATGAAGTAA+TGG - chr4_2:35641357-35641376 Msa0598610:intron 25.0%
! TGTGTAATAAATGAACCAAT+GGG + chr4_2:35642317-35642336 None:intergenic 25.0%
! ATGTGTAATAAATGAACCAA+TGG + chr4_2:35642318-35642337 None:intergenic 25.0%
! CACTCTTTGACAAAATAAAT+AGG + chr4_2:35642822-35642841 None:intergenic 25.0%
! TTTGACAACCCTTAATAAAA+AGG + chr4_2:35642847-35642866 None:intergenic 25.0%
!!! TCTAATTTTTGGTGAAGAAT+AGG - chr4_2:35642942-35642961 Msa0598610:intron 25.0%
!! ATTGTCACAAACAATTTTAG+AGG + chr4_2:35643259-35643278 None:intergenic 25.0%
!! GCATATAAAGTTCAATTTTG+GGG + chr4_2:35643380-35643399 None:intergenic 25.0%
!! CTGCATATAAAGTTCAATTT+TGG + chr4_2:35643382-35643401 None:intergenic 25.0%
! TATAGACAAAAATACAGAGA+AGG - chr4_2:35643426-35643445 Msa0598610:intron 25.0%
! GCTAGTAAAATCAACAATTT+CGG + chr4_2:35643503-35643522 None:intergenic 25.0%
! TTGGATAATTTCATAGCAAA+TGG - chr4_2:35643724-35643743 Msa0598610:CDS 25.0%
! TGGATAATTTCATAGCAAAT+GGG - chr4_2:35643725-35643744 Msa0598610:CDS 25.0%
! TTGACACTTATACCATAAAA+AGG - chr4_2:35643809-35643828 Msa0598610:five_prime_UTR 25.0%
! AAATTAGCAGCACATTATTA+TGG - chr4_2:35643855-35643874 Msa0598610:five_prime_UTR 25.0%
GAGCCTACTAATAATGAATA+TGG + chr4_2:35636524-35636543 None:intergenic 30.0%
GAATATCTCAAGAAATGGTT+AGG - chr4_2:35636771-35636790 Msa0598610:CDS 30.0%
ATATCTCAAGAAATGGTTAG+GGG - chr4_2:35636773-35636792 Msa0598610:CDS 30.0%
TCTCTCTATATTTGGATTGA+CGG - chr4_2:35637035-35637054 Msa0598610:CDS 30.0%
! GGTTACGTCTTTTTCTTAAT+TGG - chr4_2:35637460-35637479 Msa0598610:intron 30.0%
! TAAAGTGAATATTTGAAGCG+TGG + chr4_2:35637613-35637632 None:intergenic 30.0%
GGTGTGACATTTAATAAATC+AGG - chr4_2:35637652-35637671 Msa0598610:intron 30.0%
! TGCAAGGTATTATTTGCATT+TGG + chr4_2:35637940-35637959 None:intergenic 30.0%
! TTAGCATATGATTTGAAGTG+CGG - chr4_2:35638021-35638040 Msa0598610:intron 30.0%
TATTCCTACATCTGACTTAA+TGG + chr4_2:35638148-35638167 None:intergenic 30.0%
!! AAATTAATGATGGGTACAAG+TGG + chr4_2:35638321-35638340 None:intergenic 30.0%
GCTCAATGAAGATACATATT+AGG - chr4_2:35638511-35638530 Msa0598610:intron 30.0%
AATGAAGATACATATTAGGC+AGG - chr4_2:35638515-35638534 Msa0598610:intron 30.0%
!! GACATTTTGTAAAAGTATGG+TGG - chr4_2:35638664-35638683 Msa0598610:intron 30.0%
TGGTAAAATAGAATGCACTT+GGG - chr4_2:35638684-35638703 Msa0598610:intron 30.0%
TTTGCAGAGTTTATCCAATA+AGG - chr4_2:35639467-35639486 Msa0598610:intron 30.0%
TTGCAGAGTTTATCCAATAA+GGG - chr4_2:35639468-35639487 Msa0598610:intron 30.0%
AGGGTTCTTGAATTCATATA+CGG - chr4_2:35639499-35639518 Msa0598610:intron 30.0%
AGCAACTGTTTCAAAACAAA+AGG - chr4_2:35639523-35639542 Msa0598610:intron 30.0%
! GACAATATGTGGATTGTTTA+TGG + chr4_2:35639666-35639685 None:intergenic 30.0%
! AAAATAGCCTCTCTCAATTT+TGG + chr4_2:35639844-35639863 None:intergenic 30.0%
! AAAATTGAGAGAGGCTATTT+TGG - chr4_2:35639843-35639862 Msa0598610:intron 30.0%
! TTTGAAGCCAAATTTGTGTT+TGG + chr4_2:35639880-35639899 None:intergenic 30.0%
AAAATTACAAGGCTATTGTG+AGG - chr4_2:35639897-35639916 Msa0598610:intron 30.0%
! TTGGTTTGATTCCAAAGATT+TGG - chr4_2:35639941-35639960 Msa0598610:intron 30.0%
TTAACATTTGGCCAAATCTT+TGG + chr4_2:35639955-35639974 None:intergenic 30.0%
AACTCAAAGTAAGAGAATGT+GGG + chr4_2:35640147-35640166 None:intergenic 30.0%
ATAATCTTGGACAATGGAAT+TGG + chr4_2:35640225-35640244 None:intergenic 30.0%
TAATACCTGTAAAAGTTGTG+AGG + chr4_2:35640272-35640291 None:intergenic 30.0%
!! AAGAAGAGGTATCTCTAATA+TGG + chr4_2:35640590-35640609 None:intergenic 30.0%
!!! TAGGGTTGATGTGATTTTAA+TGG + chr4_2:35640694-35640713 None:intergenic 30.0%
! TCTAAAACAACAACACAACA+AGG + chr4_2:35641146-35641165 None:intergenic 30.0%
CTTGAATTTGACATATCACA+AGG + chr4_2:35641177-35641196 None:intergenic 30.0%
! CTCTTCTTTTGTAAAACCAA+GGG + chr4_2:35641267-35641286 None:intergenic 30.0%
!!! CTTGGTTTTACAAAAGAAGA+GGG - chr4_2:35641266-35641285 Msa0598610:intron 30.0%
TTTCCTATACAATGTCTTGT+AGG - chr4_2:35641942-35641961 Msa0598610:intron 30.0%
TACACATGCAAAATGAGTAA+TGG - chr4_2:35642331-35642350 Msa0598610:intron 30.0%
ACACATGCAAAATGAGTAAT+GGG - chr4_2:35642332-35642351 Msa0598610:intron 30.0%
TGTGAATCAAAGTCACTAAA+TGG + chr4_2:35642427-35642446 None:intergenic 30.0%
AATACCCAACAATATAAGAC+CGG - chr4_2:35642696-35642715 Msa0598610:intron 30.0%
TATATCGGATGAACTTATTG+CGG + chr4_2:35642780-35642799 None:intergenic 30.0%
!! AAGAGTGTGCCTTTTTATTA+AGG - chr4_2:35642835-35642854 Msa0598610:CDS 30.0%
! AGAGTGTGCCTTTTTATTAA+GGG - chr4_2:35642836-35642855 Msa0598610:CDS 30.0%
TAGAGGAAAAAATACTTGGT+TGG + chr4_2:35643242-35643261 None:intergenic 30.0%
TTAAACTTACAGGGTTATAC+AGG - chr4_2:35643308-35643327 Msa0598610:intron 30.0%
GTTATTTACTGGGAGATTAA+AGG - chr4_2:35643556-35643575 Msa0598610:CDS 30.0%
GGATAATTTCATAGCAAATG+GGG - chr4_2:35643726-35643745 Msa0598610:CDS 30.0%
CACATTATTATGGATGTAGT+TGG - chr4_2:35643865-35643884 Msa0598610:five_prime_UTR 30.0%
AGAATGTTGAGAAGAAGCAA+AGG + chr4_2:35636546-35636565 None:intergenic 35.0%
GTGTGGAATATCTCAAGAAA+TGG - chr4_2:35636766-35636785 Msa0598610:CDS 35.0%
! AGGAACCAAAGAAGTGTAAA+GGG + chr4_2:35636838-35636857 None:intergenic 35.0%
! TAGGAACCAAAGAAGTGTAA+AGG + chr4_2:35636839-35636858 None:intergenic 35.0%
AAATCAGCATGTGAAGCAAT+AGG + chr4_2:35636858-35636877 None:intergenic 35.0%
TCGGAAATTCTCTGAATGAA+TGG + chr4_2:35636885-35636904 None:intergenic 35.0%
TTCATTCAGAGAATTTCCGA+TGG - chr4_2:35636885-35636904 Msa0598610:CDS 35.0%
ATAGGTTGTTGAGTGAGTAA+AGG + chr4_2:35636921-35636940 None:intergenic 35.0%
CTTAAGGAAAGAGTGGTTAT+AGG + chr4_2:35636939-35636958 None:intergenic 35.0%
CTATAACCACTCTTTCCTTA+AGG - chr4_2:35636937-35636956 Msa0598610:CDS 35.0%
TATCAGCAGCATATAGATCA+AGG - chr4_2:35637631-35637650 Msa0598610:intron 35.0%
!! CTATAAACTCCTGTTTTGAG+TGG + chr4_2:35638079-35638098 None:intergenic 35.0%
ATAGCCATTAAGTCAGATGT+AGG - chr4_2:35638141-35638160 Msa0598610:intron 35.0%
GAAGTGAGTAAGTGCTAATT+AGG + chr4_2:35638364-35638383 None:intergenic 35.0%
TGATAAGCTTAAGTGAGACA+TGG - chr4_2:35638459-35638478 Msa0598610:intron 35.0%
GATAAGCTTAAGTGAGACAT+GGG - chr4_2:35638460-35638479 Msa0598610:intron 35.0%
GTGGTAAAATAGAATGCACT+TGG - chr4_2:35638683-35638702 Msa0598610:intron 35.0%
TGGCGAGGTCTTAATTATTT+AGG + chr4_2:35639403-35639422 None:intergenic 35.0%
AGAGTTTATCCAATAAGGGA+AGG - chr4_2:35639472-35639491 Msa0598610:intron 35.0%
CACTGAAAATCACTTCTTGA+GGG + chr4_2:35639639-35639658 None:intergenic 35.0%
TTCTCTCCAATGTTCTTCAA+AGG + chr4_2:35639773-35639792 None:intergenic 35.0%
TAAGTCACCAAAATTGAGAG+AGG - chr4_2:35639834-35639853 Msa0598610:intron 35.0%
! CTAGAGAAAGTTGATTGGTT+TGG - chr4_2:35639922-35639941 Msa0598610:intron 35.0%
CCATAATCAGCACTAATCAA+AGG + chr4_2:35640051-35640070 None:intergenic 35.0%
!! CCTTTGATTAGTGCTGATTA+TGG - chr4_2:35640048-35640067 Msa0598610:intron 35.0%
ATTATGGTTCAACTGAAAGC+TGG - chr4_2:35640064-35640083 Msa0598610:intron 35.0%
ACAGCAAATGTAACTTCTTC+TGG + chr4_2:35640120-35640139 None:intergenic 35.0%
GAACTCAAAGTAAGAGAATG+TGG + chr4_2:35640148-35640167 None:intergenic 35.0%
CCTACTATAATCTTGGACAA+TGG + chr4_2:35640231-35640250 None:intergenic 35.0%
CCATTGTCCAAGATTATAGT+AGG - chr4_2:35640228-35640247 Msa0598610:CDS 35.0%
CTGTTGTCCTACTATAATCT+TGG + chr4_2:35640238-35640257 None:intergenic 35.0%
! ATTGTCCTCACAACTTTTAC+AGG - chr4_2:35640264-35640283 Msa0598610:CDS 35.0%
TAATAAACCACGTGAAGAAG+AGG + chr4_2:35640604-35640623 None:intergenic 35.0%
! CCTCTTCTTTTGTAAAACCA+AGG + chr4_2:35641268-35641287 None:intergenic 35.0%
!!! CCTTGGTTTTACAAAAGAAG+AGG - chr4_2:35641265-35641284 Msa0598610:intron 35.0%
ATGCCTACAAGACATTGTAT+AGG + chr4_2:35641948-35641967 None:intergenic 35.0%
! ATCTAGAACACATTACCCAT+TGG - chr4_2:35642299-35642318 Msa0598610:intron 35.0%
! CAATCGTTTTCAAACTTACC+TGG - chr4_2:35642990-35643009 Msa0598610:intron 35.0%
TACGTACAGACAAACTTAGT+TGG - chr4_2:35643045-35643064 Msa0598610:intron 35.0%
AAGTGTCAGGATTTCACAAT+GGG - chr4_2:35643353-35643372 Msa0598610:intron 35.0%
TGGTCACTACGTTATTTACT+GGG - chr4_2:35643546-35643565 Msa0598610:CDS 35.0%
TGATGATTGTTGCAGAGAAA+TGG - chr4_2:35643600-35643619 Msa0598610:CDS 35.0%
ATCCATGATCAGCAAAAGAT+AGG + chr4_2:35643627-35643646 None:intergenic 35.0%
! TTTTGCTGATCATGGATATG+TGG - chr4_2:35643630-35643649 Msa0598610:CDS 35.0%
TCCAAAATGCAAAGTTCAAG+TGG + chr4_2:35643682-35643701 None:intergenic 35.0%
!! AACTTTGCATTTTGGAGAGA+GGG - chr4_2:35643686-35643705 Msa0598610:CDS 35.0%
! AGGGACTTTCAAGAAGATTT+TGG - chr4_2:35643705-35643724 Msa0598610:CDS 35.0%
! TGAACCAATTTAAGACTCCT+AGG - chr4_2:35643755-35643774 Msa0598610:CDS 35.0%
! TGTGCTACGAAACCTTTTTA+TGG + chr4_2:35643824-35643843 None:intergenic 35.0%
ATAAAAAGGTTTCGTAGCAC+AGG - chr4_2:35643823-35643842 Msa0598610:five_prime_UTR 35.0%
! TCTGAAACAAAACCATGGTG+TGG - chr4_2:35636749-35636768 Msa0598610:CDS 40.0%
TCTTGAGATATTCCACACCA+TGG + chr4_2:35636764-35636783 None:intergenic 40.0%
TAAAGGGATTCCAATGCACA+TGG + chr4_2:35636822-35636841 None:intergenic 40.0%
GGAATCCCTTTACACTTCTT+TGG - chr4_2:35636830-35636849 Msa0598610:CDS 40.0%
GCACATAAAAGGTGACCTTA+AGG + chr4_2:35636955-35636974 None:intergenic 40.0%
! ATGATTTGAAGTGCGGTATC+TGG - chr4_2:35638028-35638047 Msa0598610:intron 40.0%
! TGATTTGAAGTGCGGTATCT+GGG - chr4_2:35638029-35638048 Msa0598610:intron 40.0%
TTGAGGCTCCTAAAATTACG+AGG + chr4_2:35638581-35638600 None:intergenic 40.0%
ATAGAATGCACTTGGGTCTT+TGG - chr4_2:35638691-35638710 Msa0598610:intron 40.0%
AACATGGCCTCCGATTATAT+CGG - chr4_2:35639351-35639370 Msa0598610:intron 40.0%
GGACCTAGTACTTAATAGCA+GGG + chr4_2:35639382-35639401 None:intergenic 40.0%
AGGACCTAGTACTTAATAGC+AGG + chr4_2:35639383-35639402 None:intergenic 40.0%
TTAAGACCTCGCCATTGAAA+AGG - chr4_2:35639409-35639428 Msa0598610:intron 40.0%
! ATAAGACCTTTTCAATGGCG+AGG + chr4_2:35639418-35639437 None:intergenic 40.0%
GTTTATCCAATAAGGGAAGG+AGG - chr4_2:35639475-35639494 Msa0598610:intron 40.0%
CCACTGAAAATCACTTCTTG+AGG + chr4_2:35639640-35639659 None:intergenic 40.0%
! CCTCAAGAAGTGATTTTCAG+TGG - chr4_2:35639637-35639656 Msa0598610:intron 40.0%
AAGAAGGAGGTGACAATATG+TGG + chr4_2:35639677-35639696 None:intergenic 40.0%
ACATATTGTCACCTCCTTCT+TGG - chr4_2:35639676-35639695 Msa0598610:intron 40.0%
CTACTTGATCAGAGTAGAAG+AGG + chr4_2:35639702-35639721 None:intergenic 40.0%
CATGCTATAGACAAAAGCTG+AGG + chr4_2:35639734-35639753 None:intergenic 40.0%
! CTCAGCTTTTGTCTATAGCA+TGG - chr4_2:35639732-35639751 Msa0598610:intron 40.0%
! TCACCACCTTTGAAGAACAT+TGG - chr4_2:35639764-35639783 Msa0598610:intron 40.0%
TCTCCAATGTTCTTCAAAGG+TGG + chr4_2:35639770-35639789 None:intergenic 40.0%
! AGGAGCTAGAGAAAGTTGAT+TGG - chr4_2:35639917-35639936 Msa0598610:intron 40.0%
ACTTCTTCTGGTGGCAAAAT+AGG + chr4_2:35640108-35640127 None:intergenic 40.0%
GCAAATGTAACTTCTTCTGG+TGG + chr4_2:35640117-35640136 None:intergenic 40.0%
! TGCTTATAATCCTGACTCGA+GGG + chr4_2:35640321-35640340 None:intergenic 40.0%
! TTGCTTATAATCCTGACTCG+AGG + chr4_2:35640322-35640341 None:intergenic 40.0%
TTATTAGAAGTTCCCTGCCT+AGG - chr4_2:35640618-35640637 Msa0598610:CDS 40.0%
GTCATATTACATCCTAGGCA+GGG + chr4_2:35640633-35640652 None:intergenic 40.0%
AGTCATATTACATCCTAGGC+AGG + chr4_2:35640634-35640653 None:intergenic 40.0%
AAAACCAAGGGTTGACGTTT+AGG + chr4_2:35641255-35641274 None:intergenic 40.0%
! TTACGGACTGACAACTTATG+TGG - chr4_2:35642453-35642472 Msa0598610:intron 40.0%
ACTGACAACTTATGTGGTGT+TGG - chr4_2:35642459-35642478 Msa0598610:intron 40.0%
TCACTTCAATAAATCCTGCC+AGG + chr4_2:35643011-35643030 None:intergenic 40.0%
CAAATCTTGTAACTGCGCTA+GGG + chr4_2:35643120-35643139 None:intergenic 40.0%
! GAAGTGTCAGGATTTCACAA+TGG - chr4_2:35643352-35643371 Msa0598610:intron 40.0%
GCAGATGTAACTAATGAACC+TGG - chr4_2:35643526-35643545 Msa0598610:CDS 40.0%
CAGTAAATAACGTAGTGACC+AGG + chr4_2:35643547-35643566 None:intergenic 40.0%
CTGGTCACTACGTTATTTAC+TGG - chr4_2:35643545-35643564 Msa0598610:CDS 40.0%
TTACTGGGAGATTAAAGGAG+AGG - chr4_2:35643561-35643580 Msa0598610:CDS 40.0%
! GACCTATCTTTTGCTGATCA+TGG - chr4_2:35643622-35643641 Msa0598610:CDS 40.0%
! GCCACTTGAACTTTGCATTT+TGG - chr4_2:35643678-35643697 Msa0598610:CDS 40.0%
!! GAACTTTGCATTTTGGAGAG+AGG - chr4_2:35643685-35643704 Msa0598610:CDS 40.0%
TGCACCTAGGAGTCTTAAAT+TGG + chr4_2:35643762-35643781 None:intergenic 40.0%
ACATGATTGTTAGTGCACCT+AGG + chr4_2:35643775-35643794 None:intergenic 40.0%
!! CTGAGAAGTGTTGGTTCCAT+TGG + chr4_2:35636621-35636640 None:intergenic 45.0%
! CTGTTGTAGCTGAGAAGTGT+TGG + chr4_2:35636630-35636649 None:intergenic 45.0%
CTTCTCAGCTACAACAGCAA+TGG - chr4_2:35636633-35636652 Msa0598610:CDS 45.0%
AGCTACAACAGCAATGGTTG+TGG - chr4_2:35636639-35636658 Msa0598610:CDS 45.0%
!! GTTGGTTCGAAGATGTGTCT+AGG - chr4_2:35636688-35636707 Msa0598610:CDS 45.0%
GAAGATGTGTCTAGGAACAC+AGG - chr4_2:35636696-35636715 Msa0598610:CDS 45.0%
CGATATGGAACCATGTGCAT+TGG - chr4_2:35636809-35636828 Msa0598610:CDS 45.0%
TAAAGGAGCAGTGTCACCAT+CGG + chr4_2:35636904-35636923 None:intergenic 45.0%
AGGTGACCTTAAGGAAAGAG+TGG + chr4_2:35636946-35636965 None:intergenic 45.0%
!!! TGGTGTTGGTTTTGCAGTTC+TGG - chr4_2:35637534-35637553 Msa0598610:intron 45.0%
TGAGCACTATGTCGGGTAAA+GGG + chr4_2:35637588-35637607 None:intergenic 45.0%
TTGAGCACTATGTCGGGTAA+AGG + chr4_2:35637589-35637608 None:intergenic 45.0%
! GATTTGAAGTGCGGTATCTG+GGG - chr4_2:35638030-35638049 Msa0598610:intron 45.0%
!! TCCTGTTTTGAGTGGATGTG+CGG + chr4_2:35638071-35638090 None:intergenic 45.0%
AGATACATATTAGGCAGGCC+CGG - chr4_2:35638520-35638539 Msa0598610:intron 45.0%
ATCCAATAAGGGAAGGAGGA+AGG - chr4_2:35639479-35639498 Msa0598610:intron 45.0%
TCCAATAAGGGAAGGAGGAA+GGG - chr4_2:35639480-35639499 Msa0598610:intron 45.0%
GGTTCAACTGAAAGCTGGAT+TGG - chr4_2:35640069-35640088 Msa0598610:intron 45.0%
AGAGATACCTCTTCTTCACG+TGG - chr4_2:35640594-35640613 Msa0598610:CDS 45.0%
!! GCTACAACCCTAGCTTTACA+AGG - chr4_2:35641200-35641219 Msa0598610:intron 45.0%
!! AACCCTAGCTTTACAAGGAC+TGG - chr4_2:35641205-35641224 Msa0598610:intron 45.0%
CACCAGTCCTTGTAAAGCTA+GGG + chr4_2:35641210-35641229 None:intergenic 45.0%
TCACCAGTCCTTGTAAAGCT+AGG + chr4_2:35641211-35641230 None:intergenic 45.0%
! TAGCTTTACAAGGACTGGTG+AGG - chr4_2:35641210-35641229 Msa0598610:intron 45.0%
! AGCTTTACAAGGACTGGTGA+GGG - chr4_2:35641211-35641230 Msa0598610:intron 45.0%
GTTGACGTTTAGGAATGGCT+AGG + chr4_2:35641245-35641264 None:intergenic 45.0%
CAAGGGTTGACGTTTAGGAA+TGG + chr4_2:35641250-35641269 None:intergenic 45.0%
CATTCCTAAACGTCAACCCT+TGG - chr4_2:35641248-35641267 Msa0598610:intron 45.0%
ACCCAACAATATAAGACCGG+AGG - chr4_2:35642699-35642718 Msa0598610:intron 45.0%
! CCCTCCGGTCTTATATTGTT+GGG + chr4_2:35642703-35642722 None:intergenic 45.0%
CCCAACAATATAAGACCGGA+GGG - chr4_2:35642700-35642719 Msa0598610:intron 45.0%
! TCCCTCCGGTCTTATATTGT+TGG + chr4_2:35642704-35642723 None:intergenic 45.0%
ACGGTAACTAATACTCCCTC+CGG + chr4_2:35642718-35642737 None:intergenic 45.0%
! CGTTTTCAAACTTACCTGGC+AGG - chr4_2:35642994-35643013 Msa0598610:intron 45.0%
AACTGCGCTAGGGTTATTTG+AGG + chr4_2:35643110-35643129 None:intergenic 45.0%
CCAAATCTTGTAACTGCGCT+AGG + chr4_2:35643121-35643140 None:intergenic 45.0%
CCTAGCGCAGTTACAAGATT+TGG - chr4_2:35643118-35643137 Msa0598610:intron 45.0%
AGAGAAGGACCTTCAACTAG+TGG - chr4_2:35643441-35643460 Msa0598610:intron 45.0%
CTCTCTCTACCACTAGTTGA+AGG + chr4_2:35643453-35643472 None:intergenic 45.0%
CTTCAACTAGTGGTAGAGAG+AGG - chr4_2:35643451-35643470 Msa0598610:intron 45.0%
!! AAAAATTATAAATTAATGAT+GGG + chr4_2:35638330-35638349 None:intergenic 5.0%
!! AAAAAATTATAAATTAATGA+TGG + chr4_2:35638331-35638350 None:intergenic 5.0%
!! TTATATTAAAAAAAAAATTG+AGG + chr4_2:35638598-35638617 None:intergenic 5.0%
!!! TTGTTTTAATATAAAAAATT+GGG + chr4_2:35639140-35639159 None:intergenic 5.0%
!!! ATTGTTTTAATATAAAAAAT+TGG + chr4_2:35639141-35639160 None:intergenic 5.0%
!!! TTTATTTTATTATTCAAATA+TGG - chr4_2:35640465-35640484 Msa0598610:CDS 5.0%
!! TTTAAATAACTTAATATTAT+TGG - chr4_2:35640500-35640519 Msa0598610:CDS 5.0%
!! ATATTAAAAACAAAAATATT+GGG + chr4_2:35642401-35642420 None:intergenic 5.0%
!! TATATTAAAAACAAAAATAT+TGG + chr4_2:35642402-35642421 None:intergenic 5.0%
!! TTGCAGTTCTGGAACCACAG+AGG - chr4_2:35637545-35637564 Msa0598610:intron 50.0%
!! TGCAGTTCTGGAACCACAGA+GGG - chr4_2:35637546-35637565 Msa0598610:intron 50.0%
CGTGGTTTGAGCACTATGTC+GGG + chr4_2:35637595-35637614 None:intergenic 50.0%
GCGTGGTTTGAGCACTATGT+CGG + chr4_2:35637596-35637615 None:intergenic 50.0%
!! GTTTTGAGTGGATGTGCGGT+GGG + chr4_2:35638067-35638086 None:intergenic 50.0%
!! TGTTTTGAGTGGATGTGCGG+TGG + chr4_2:35638068-35638087 None:intergenic 50.0%
ACCGCACATCCACTCAAAAC+AGG - chr4_2:35638067-35638086 Msa0598610:intron 50.0%
! GTGCCAGGCCTCGTAATTTT+AGG - chr4_2:35638570-35638589 Msa0598610:intron 50.0%
GCTCCTAAAATTACGAGGCC+TGG + chr4_2:35638576-35638595 None:intergenic 50.0%
GGCCTCCGATTATATCGGAA+CGG - chr4_2:35639356-35639375 Msa0598610:intron 50.0%
CAGGGCCGTTCCGATATAAT+CGG + chr4_2:35639364-35639383 None:intergenic 50.0%
CGGCCCTGCTATTAAGTACT+AGG - chr4_2:35639376-35639395 Msa0598610:intron 50.0%
ACCCTTCCTCCTTCCCTTAT+TGG + chr4_2:35639484-35639503 None:intergenic 50.0%
AGTAGAAGAGGCCAAGAAGG+AGG + chr4_2:35639690-35639709 None:intergenic 50.0%
CAGAGTAGAAGAGGCCAAGA+AGG + chr4_2:35639693-35639712 None:intergenic 50.0%
! GCTTTACAAGGACTGGTGAG+GGG - chr4_2:35641212-35641231 Msa0598610:intron 50.0%
!! CCTCGTAGTATGTGGGTTAG+CGG + chr4_2:35642370-35642389 None:intergenic 50.0%
CCACTCACCTCGTAGTATGT+GGG + chr4_2:35642377-35642396 None:intergenic 50.0%
TCCACTCACCTCGTAGTATG+TGG + chr4_2:35642378-35642397 None:intergenic 50.0%
GGGTTATACAGGTGCAGACT+AGG - chr4_2:35643319-35643338 Msa0598610:intron 50.0%
!! GGAGATGTGGTAGAAGTGTC+AGG - chr4_2:35643340-35643359 Msa0598610:intron 50.0%
!! GCAGTTCTGGAACCACAGAG+GGG - chr4_2:35637547-35637566 Msa0598610:intron 55.0%
GAATTTCTGCCTCCCCTCTG+TGG + chr4_2:35637562-35637581 None:intergenic 55.0%
TTGAAGTGCGGTATCTGGGG+TGG - chr4_2:35638033-35638052 Msa0598610:intron 55.0%
GCTCACCTTGCGTTTGCCAA+GGG + chr4_2:35638546-35638565 None:intergenic 55.0%
AGCTCACCTTGCGTTTGCCA+AGG + chr4_2:35638547-35638566 None:intergenic 55.0%
GGCAAACGCAAGGTGAGCTA+CGG - chr4_2:35638548-35638567 Msa0598610:intron 55.0%
CACTTGGGTCTTTGGTCTCG+AGG - chr4_2:35638699-35638718 Msa0598610:intron 55.0%
GGCCGTTCCGATATAATCGG+AGG + chr4_2:35639361-35639380 None:intergenic 55.0%
CGAGGGAGTAGATGTGTGGA+AGG + chr4_2:35640304-35640323 None:intergenic 55.0%
GACTCGAGGGAGTAGATGTG+TGG + chr4_2:35640308-35640327 None:intergenic 55.0%
CACATCTACTCCCTCGAGTC+AGG - chr4_2:35640308-35640327 Msa0598610:CDS 55.0%
!! AGTATGTGGGTTAGCGGCTG+TGG + chr4_2:35642364-35642383 None:intergenic 55.0%
CCGCTAACCCACATACTACG+AGG - chr4_2:35642367-35642386 Msa0598610:intron 55.0%
CCCACATACTACGAGGTGAG+TGG - chr4_2:35642374-35642393 Msa0598610:intron 55.0%
CAGGTGCAGACTAGGAGATG+TGG - chr4_2:35643327-35643346 Msa0598610:intron 55.0%
!! GTTCTGGAACCACAGAGGGG+AGG - chr4_2:35637550-35637569 Msa0598610:intron 60.0%
TGAGTGGATGTGCGGTGGGT+GGG + chr4_2:35638063-35638082 None:intergenic 60.0%
TTGAGTGGATGTGCGGTGGG+TGG + chr4_2:35638064-35638083 None:intergenic 60.0%
ACCTTGCGTTTGCCAAGGGC+CGG + chr4_2:35638542-35638561 None:intergenic 60.0%
! ACAAGGACTGGTGAGGGGCA+TGG - chr4_2:35641217-35641236 Msa0598610:intron 60.0%
TATTAGGCAGGCCCGGCCCT+TGG - chr4_2:35638527-35638546 Msa0598610:intron 65.0%
CCTTGCGTTTGCCAAGGGCC+GGG + chr4_2:35638541-35638560 None:intergenic 65.0%
GCAAGGTGAGCTACGGTGCC+AGG - chr4_2:35638555-35638574 Msa0598610:intron 65.0%
CCCGGCCCTTGGCAAACGCA+AGG - chr4_2:35638538-35638557 Msa0598610:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 35636477 35643944 35636477 ID=Msa0598610;Name=Msa0598610
chr4_2 mRNA 35636477 35643944 35636477 ID=Msa0598610-mRNA-1;Parent=Msa0598610;Name=Msa0598610-mRNA-1;_AED=0.04;_eAED=0.04;_QI=144|0.5|0.4|0.8|1|1|5|0|587
chr4_2 exon 35636477 35636502 35636477 ID=Msa0598610-mRNA-1:exon:8180;Parent=Msa0598610-mRNA-1
chr4_2 exon 35636577 35637091 35636577 ID=Msa0598610-mRNA-1:exon:8179;Parent=Msa0598610-mRNA-1
chr4_2 exon 35640165 35640947 35640165 ID=Msa0598610-mRNA-1:exon:8178;Parent=Msa0598610-mRNA-1
chr4_2 exon 35642769 35642870 35642769 ID=Msa0598610-mRNA-1:exon:8177;Parent=Msa0598610-mRNA-1
chr4_2 exon 35643463 35643944 35643463 ID=Msa0598610-mRNA-1:exon:8176;Parent=Msa0598610-mRNA-1
chr4_2 five_prime_UTR 35643801 35643944 35643801 ID=Msa0598610-mRNA-1:five_prime_utr;Parent=Msa0598610-mRNA-1
chr4_2 CDS 35643463 35643800 35643463 ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1
chr4_2 CDS 35642769 35642870 35642769 ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1
chr4_2 CDS 35640165 35640947 35640165 ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1
chr4_2 CDS 35636577 35637091 35636577 ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1
chr4_2 CDS 35636477 35636502 35636477 ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1
Gene Sequence

>Msa0598610

ATGGAACCAACACTTCTCAGCTACAACAGCAATGGTTGTGGAAACTCAGACTATGAAAACATTATTAGTTGGTTCGAAGATGTGTCTAGGAACACAGGTTCTGTTCAGACTCAGATACTATGCAATATTCTGAAACAAAACCATGGTGTGGAATATCTCAAGAAATGGTTAGGGGATTACAATATATTCGATATGGAACCATGTGCATTGGAATCCCTTTACACTTCTTTGGTTCCTATTGCTTCACATGCTGATTTTGAACCATTCATTCAGAGAATTTCCGATGGTGACACTGCTCCTTTACTCACTCAACAACCTATAACCACTCTTTCCTTAAGTTCTGGAACCACAGAGGGGAGGCAGAAATTCGTACCCTTTACCCGACATAGTGCTCAAACCACGCTTCAAATATTCACTTTATCAGCAGCATATAGATCAAGAGTTTATCCAATAAGGGAAGGAGGAAGGGTTCTTGAATTCATATACGGCAGCAACTGTTTCAAAACAAAAGGAAATTTAACAGTGGGAACAGCAACAACACATTGCTATGCAAGTGAAGAATTCAAAATCAAAAAGCAAAAAACAAAGTCATTTAGTTGCAGCCCTCAAGAAGTGATTTTCAGTGGAGACCATAAACAATCCACATATTGTCACCTCCTTCTTGGCCTCTTCTACTCTGATCAAGTAGAATTCATCACCTCAGCTTTTGTCTATAGCATGGTACAAGCTTTCACCACCTTTGAAGAACATTGGAGAGAAATTTGTAATGACATTAGACATGGAACTTTAAGTTCAAAAATTAAGTCACCAAAATTGAGAGAGGCTATTTTGGACATAATAAGTCCAAACACAAATTTGGCTTCAAAATTACAAGGCTATTGTGAGGAGCTAGAGAAAGTTGATTGGTTTGGTTTGATTCCAAAGATTTGGCCAAATGTTAAGTACTTATATGCAATAATGACAGGGTCAATGCAACCATATTTGAAAAAACTTAGACATTATGCAAATGGGTTGCCTTTGATTAGTGCTGATTATGGTTCAACTGAAAGCTGGATTGGTGTTAATGTTAATCCTATTTTGCCACCAGAAGAAGTTACATTTGCTGTTGTACCCACATTCTCTTACTTTGAGTTCATACCTCTTCATAGAAATAAACAAGATAGCAGTGACGATTTCATTGAAGACAAGCCAATTCCATTGTCCAAGATTATAGTAGGACAACAGTGCAGACTAGGAGATGTGGTAGAAGTGTCAGGATTTCACAATGGGACCCCAAAATTGAACTTTATATGCAGAAGAAAGCTAATATTAACAGTAAATATAGACAAAAATACAGAGAAGGACCTTCAACTAGTGGTAGAGAGAGGATCACAAATTTTAAACAAAGCAAAAGCCGAAATTGTTGATTTTACTAGCAATGCAGATGTAACTAATGAACCTGGTCACTACGTTATTTACTGGGAGATTAAAGGAGAGGTAGATGACAATGTACTTGATGATTGTTGCAGAGAAATGGACCTATCTTTTGCTGATCATGGATATGTGGTGTCAAGAAAAACAAATTCAATTGGGCCACTTGAACTTTGCATTTTGGAGAGAGGGACTTTCAAGAAGATTTTGGATAATTTCATAGCAAATGGGGTTGCATTGAACCAATTTAAGACTCCTAGGTGCACTAACAATCATGTGTTACTCAAAATTCTTGACACTTATACCATAAAAAGGTTTCGTAGCACAGGTCAATGTACTAGTCTTATGTTATAG

Protein sequence

>Msa0598610

MEPTLLSYNSNGCGNSDYENIISWFEDVSRNTGSVQTQILCNILKQNHGVEYLKKWLGDYNIFDMEPCALESLYTSLVPIASHADFEPFIQRISDGDTAPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLSAAYRSRVYPIREGGRVLEFIYGSNCFKTKGNLTVGTATTHCYASEEFKIKKQKTKSFSCSPQEVIFSGDHKQSTYCHLLLGLFYSDQVEFITSAFVYSMVQAFTTFEEHWREICNDIRHGTLSSKIKSPKLREAILDIISPNTNLASKLQGYCEELEKVDWFGLIPKIWPNVKYLYAIMTGSMQPYLKKLRHYANGLPLISADYGSTESWIGVNVNPILPPEEVTFAVVPTFSYFEFIPLHRNKQDSSDDFIEDKPIPLSKIIVGQQCRLGDVVEVSGFHNGTPKLNFICRRKLILTVNIDKNTEKDLQLVVERGSQILNKAKAEIVDFTSNADVTNEPGHYVIYWEIKGEVDDNVLDDCCREMDLSFADHGYVVSRKTNSIGPLELCILERGTFKKILDNFIANGVALNQFKTPRCTNNHVLLKILDTYTIKRFRSTGQCTSLML*