AlfalfaGEDB | Msa0598610

M. sativa cultivar zhongmu-4 / Msa0598610

KEGG: K14487|K14506
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896
PFAM: PF03321.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598610	XP_013442717.2	95.630	595	11	2	1	580	1	595	0.0	1174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598610	sp\|Q9ZNS2\|GH310_ARATH	65.358	586	182	5	15	580	5	589	0.0	796

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0598610	0.840071	1.083975e-57	-8.615850e-47
Msa0000220	Msa0598610	0.870786	1.121093e-66	-8.615850e-47
Msa0001510	Msa0598610	0.813868	2.058894e-51	-8.615850e-47
Msa0002690	Msa0598610	0.834614	2.706541e-56	-8.615850e-47
Msa0002700	Msa0598610	0.831074	2.050991e-55	-8.615850e-47
Msa0003370	Msa0598610	0.853561	2.202381e-61	-8.615850e-47
Msa0004180	Msa0598610	0.834963	2.211943e-56	-8.615850e-47
Msa0004990	Msa0598610	-0.812223	4.722386e-51	-8.615850e-47
Msa0005190	Msa0598610	0.838313	3.096641e-57	-8.615850e-47
Msa0007570	Msa0598610	0.829899	3.976835e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598610	MtrunA17_Chr4g0022401	97.073	410	10	1	1	408	1	410	0.0	828
Msa0598610	MtrunA17_Chr7g0275471	46.978	579	282	6	17	580	9	577	0.0	554
Msa0598610	MtrunA17_Chr8g0347381	45.078	579	288	8	17	579	9	573	2.73e-179	518
Msa0598610	MtrunA17_Chr8g0347421	45.391	575	285	8	17	576	9	569	4.87e-177	513
Msa0598610	MtrunA17_Chr8g0347391	44.905	579	290	8	17	580	16	580	2.26e-176	511
Msa0598610	MtrunA17_Chr8g0347431	46.348	397	191	5	199	579	9	399	2.00e-131	390
Msa0598610	MtrunA17_Chr4g0022391	98.844	173	2	0	408	580	13	185	9.52e-122	357
Msa0598610	MtrunA17_Chr8g0361551	33.106	586	355	7	19	578	15	589	8.83e-115	354
Msa0598610	MtrunA17_Chr5g0421331	32.746	568	347	6	22	573	23	571	1.39e-112	348
Msa0598610	MtrunA17_Chr2g0318991	33.106	586	352	10	22	578	17	591	8.36e-111	344

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598610	AT4G03400.2	65.358	586	182	5	15	580	5	589	0.0	796
Msa0598610	AT4G03400.1	65.358	586	182	5	15	580	5	589	0.0	796
Msa0598610	AT2G46370.4	45.250	579	289	5	17	580	20	585	0.0	541
Msa0598610	AT2G46370.1	45.250	579	289	5	17	580	9	574	0.0	540
Msa0598610	AT2G46370.2	45.250	579	289	5	17	580	9	574	0.0	540
Msa0598610	AT2G46370.3	47.505	501	240	4	95	580	3	495	2.07e-173	501
Msa0598610	AT4G37390.1	33.101	574	351	8	22	573	24	586	1.10e-117	362
Msa0598610	AT1G28130.1	33.059	608	356	10	7	578	4	596	3.99e-116	358
Msa0598610	AT4G27260.1	33.105	583	353	8	22	578	25	596	4.53e-113	350
Msa0598610	AT1G59500.1	34.031	573	341	9	22	573	24	580	1.07e-112	349

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Find 127 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGCCTCTCTCAATTT+TGG	0.172918	4_2:+35640558	None:intergenic
AAAATTACAAGGCTATTGTG+AGG	0.634297	4_2:-35640502	Msa0598610:CDS
AAAATTGAGAGAGGCTATTT+TGG	0.167851	4_2:-35640556	Msa0598610:CDS
AAACCATATTCATTATTAGT+AGG	0.418127	4_2:-35643881	Msa0598610:five_prime_UTR
AAACTTAGACATTATGCAAA+TGG	0.367702	4_2:-35640378	Msa0598610:CDS
AAATCAGCATGTGAAGCAAT+AGG	0.420636	4_2:+35643544	None:intergenic
AACAAAAGGAAATTTAACAG+TGG	0.573015	4_2:-35640862	Msa0598610:CDS
AACTCAAAGTAAGAGAATGT+GGG	0.623136	4_2:+35640255	None:intergenic
AACTTAGACATTATGCAAAT+GGG	0.457425	4_2:-35640377	Msa0598610:CDS
AAGAAGGAGGTGACAATATG+TGG	0.502219	4_2:+35640725	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGCCTACTAATAATGAATA+TGG	+	chr4_2:35636524-35636543	None:intergenic	30.0%
GAATATCTCAAGAAATGGTT+AGG	-	chr4_2:35636771-35636790	Msa0598610:CDS	30.0%
ATATCTCAAGAAATGGTTAG+GGG	-	chr4_2:35636773-35636792	Msa0598610:CDS	30.0%
TCTCTCTATATTTGGATTGA+CGG	-	chr4_2:35637035-35637054	Msa0598610:CDS	30.0%
GGTGTGACATTTAATAAATC+AGG	-	chr4_2:35637652-35637671	Msa0598610:intron	30.0%
TATTCCTACATCTGACTTAA+TGG	+	chr4_2:35638148-35638167	None:intergenic	30.0%
GCTCAATGAAGATACATATT+AGG	-	chr4_2:35638511-35638530	Msa0598610:intron	30.0%
AATGAAGATACATATTAGGC+AGG	-	chr4_2:35638515-35638534	Msa0598610:intron	30.0%
TGGTAAAATAGAATGCACTT+GGG	-	chr4_2:35638684-35638703	Msa0598610:intron	30.0%
TTTGCAGAGTTTATCCAATA+AGG	-	chr4_2:35639467-35639486	Msa0598610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	35636477	35643944	35636477	ID=Msa0598610;Name=Msa0598610
chr4_2	mRNA	35636477	35643944	35636477	ID=Msa0598610-mRNA-1;Parent=Msa0598610;Name=Msa0598610-mRNA-1;_AED=0.04;_eAED=0.04;_QI=144\|0.5\|0.4\|0.8\|1\|1\|5\|0\|587
chr4_2	exon	35636477	35636502	35636477	ID=Msa0598610-mRNA-1:exon:8180;Parent=Msa0598610-mRNA-1
chr4_2	exon	35636577	35637091	35636577	ID=Msa0598610-mRNA-1:exon:8179;Parent=Msa0598610-mRNA-1
chr4_2	exon	35640165	35640947	35640165	ID=Msa0598610-mRNA-1:exon:8178;Parent=Msa0598610-mRNA-1
chr4_2	exon	35642769	35642870	35642769	ID=Msa0598610-mRNA-1:exon:8177;Parent=Msa0598610-mRNA-1
chr4_2	exon	35643463	35643944	35643463	ID=Msa0598610-mRNA-1:exon:8176;Parent=Msa0598610-mRNA-1
chr4_2	five_prime_UTR	35643801	35643944	35643801	ID=Msa0598610-mRNA-1:five_prime_utr;Parent=Msa0598610-mRNA-1
chr4_2	CDS	35643463	35643800	35643463	ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1
chr4_2	CDS	35642769	35642870	35642769	ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1
chr4_2	CDS	35640165	35640947	35640165	ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1
chr4_2	CDS	35636577	35637091	35636577	ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1
chr4_2	CDS	35636477	35636502	35636477	ID=Msa0598610-mRNA-1:cds;Parent=Msa0598610-mRNA-1

Gene Sequence

>Msa0598610

ATGGAACCAACACTTCTCAGCTACAACAGCAATGGTTGTGGAAACTCAGACTATGAAAACATTATTAGTTGGTTCGAAGATGTGTCTAGGAACACAGGTTCTGTTCAGACTCAGATACTATGCAATATTCTGAAACAAAACCATGGTGTGGAATATCTCAAGAAATGGTTAGGGGATTACAATATATTCGATATGGAACCATGTGCATTGGAATCCCTTTACACTTCTTTGGTTCCTATTGCTTCACATGCTGATTTTGAACCATTCATTCAGAGAATTTCCGATGGTGACACTGCTCCTTTACTCACTCAACAACCTATAACCACTCTTTCCTTAAGTTCTGGAACCACAGAGGGGAGGCAGAAATTCGTACCCTTTACCCGACATAGTGCTCAAACCACGCTTCAAATATTCACTTTATCAGCAGCATATAGATCAAGAGTTTATCCAATAAGGGAAGGAGGAAGGGTTCTTGAATTCATATACGGCAGCAACTGTTTCAAAACAAAAGGAAATTTAACAGTGGGAACAGCAACAACACATTGCTATGCAAGTGAAGAATTCAAAATCAAAAAGCAAAAAACAAAGTCATTTAGTTGCAGCCCTCAAGAAGTGATTTTCAGTGGAGACCATAAACAATCCACATATTGTCACCTCCTTCTTGGCCTCTTCTACTCTGATCAAGTAGAATTCATCACCTCAGCTTTTGTCTATAGCATGGTACAAGCTTTCACCACCTTTGAAGAACATTGGAGAGAAATTTGTAATGACATTAGACATGGAACTTTAAGTTCAAAAATTAAGTCACCAAAATTGAGAGAGGCTATTTTGGACATAATAAGTCCAAACACAAATTTGGCTTCAAAATTACAAGGCTATTGTGAGGAGCTAGAGAAAGTTGATTGGTTTGGTTTGATTCCAAAGATTTGGCCAAATGTTAAGTACTTATATGCAATAATGACAGGGTCAATGCAACCATATTTGAAAAAACTTAGACATTATGCAAATGGGTTGCCTTTGATTAGTGCTGATTATGGTTCAACTGAAAGCTGGATTGGTGTTAATGTTAATCCTATTTTGCCACCAGAAGAAGTTACATTTGCTGTTGTACCCACATTCTCTTACTTTGAGTTCATACCTCTTCATAGAAATAAACAAGATAGCAGTGACGATTTCATTGAAGACAAGCCAATTCCATTGTCCAAGATTATAGTAGGACAACAGTGCAGACTAGGAGATGTGGTAGAAGTGTCAGGATTTCACAATGGGACCCCAAAATTGAACTTTATATGCAGAAGAAAGCTAATATTAACAGTAAATATAGACAAAAATACAGAGAAGGACCTTCAACTAGTGGTAGAGAGAGGATCACAAATTTTAAACAAAGCAAAAGCCGAAATTGTTGATTTTACTAGCAATGCAGATGTAACTAATGAACCTGGTCACTACGTTATTTACTGGGAGATTAAAGGAGAGGTAGATGACAATGTACTTGATGATTGTTGCAGAGAAATGGACCTATCTTTTGCTGATCATGGATATGTGGTGTCAAGAAAAACAAATTCAATTGGGCCACTTGAACTTTGCATTTTGGAGAGAGGGACTTTCAAGAAGATTTTGGATAATTTCATAGCAAATGGGGTTGCATTGAACCAATTTAAGACTCCTAGGTGCACTAACAATCATGTGTTACTCAAAATTCTTGACACTTATACCATAAAAAGGTTTCGTAGCACAGGTCAATGTACTAGTCTTATGTTATAG

Protein sequence

>Msa0598610

MEPTLLSYNSNGCGNSDYENIISWFEDVSRNTGSVQTQILCNILKQNHGVEYLKKWLGDYNIFDMEPCALESLYTSLVPIASHADFEPFIQRISDGDTAPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLSAAYRSRVYPIREGGRVLEFIYGSNCFKTKGNLTVGTATTHCYASEEFKIKKQKTKSFSCSPQEVIFSGDHKQSTYCHLLLGLFYSDQVEFITSAFVYSMVQAFTTFEEHWREICNDIRHGTLSSKIKSPKLREAILDIISPNTNLASKLQGYCEELEKVDWFGLIPKIWPNVKYLYAIMTGSMQPYLKKLRHYANGLPLISADYGSTESWIGVNVNPILPPEEVTFAVVPTFSYFEFIPLHRNKQDSSDDFIEDKPIPLSKIIVGQQCRLGDVVEVSGFHNGTPKLNFICRRKLILTVNIDKNTEKDLQLVVERGSQILNKAKAEIVDFTSNADVTNEPGHYVIYWEIKGEVDDNVLDDCCREMDLSFADHGYVVSRKTNSIGPLELCILERGTFKKILDNFIANGVALNQFKTPRCTNNHVLLKILDTYTIKRFRSTGQCTSLML*