Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532310 | XP_003604587.1 | 99.776 | 447 | 1 | 0 | 1 | 447 | 1 | 447 | 0.0 | 919 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532310 | sp|O49169|EF1A_MANES | 94.395 | 446 | 25 | 0 | 1 | 446 | 1 | 446 | 0.0 | 879 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532310 | G7JLV1 | 99.776 | 447 | 1 | 0 | 1 | 447 | 1 | 447 | 0.0 | 919 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000180 | Msa0532310 | -0.820655 | 6.114987e-53 | -8.615850e-47 |
Msa0025060 | Msa0532310 | -0.817076 | 3.976733e-52 | -8.615850e-47 |
Msa0025340 | Msa0532310 | -0.804501 | 2.095334e-49 | -8.615850e-47 |
Msa0030710 | Msa0532310 | -0.818869 | 1.564589e-52 | -8.615850e-47 |
Msa0036560 | Msa0532310 | -0.823919 | 1.068650e-53 | -8.615850e-47 |
Msa0072710 | Msa0532310 | -0.824754 | 6.801356e-54 | -8.615850e-47 |
Msa0078080 | Msa0532310 | -0.812241 | 4.681238e-51 | -8.615850e-47 |
Msa0079550 | Msa0532310 | -0.802413 | 5.677942e-49 | -8.615850e-47 |
Msa0082340 | Msa0532310 | -0.802652 | 5.068339e-49 | -8.615850e-47 |
Msa0083200 | Msa0532310 | -0.801535 | 8.602028e-49 | -8.615850e-47 |
Msa0114960 | Msa0532310 | -0.805331 | 1.405838e-49 | -8.615850e-47 |
Msa0115950 | Msa0532310 | -0.800333 | 1.513764e-48 | -8.615850e-47 |
Msa0139280 | Msa0532310 | -0.829551 | 4.831074e-55 | -8.615850e-47 |
Msa0146570 | Msa0532310 | -0.801922 | 7.164651e-49 | -8.615850e-47 |
Msa0186750 | Msa0532310 | -0.803856 | 2.854969e-49 | -8.615850e-47 |
Msa0192890 | Msa0532310 | 0.811701 | 6.137130e-51 | -8.615850e-47 |
Msa0206600 | Msa0532310 | -0.800519 | 1.387478e-48 | -8.615850e-47 |
Msa0219140 | Msa0532310 | -0.808942 | 2.416915e-50 | -8.615850e-47 |
Msa0226580 | Msa0532310 | -0.814755 | 1.310992e-51 | -8.615850e-47 |
Msa0235020 | Msa0532310 | 0.813124 | 2.999554e-51 | -8.615850e-47 |
Msa0369660 | Msa0532310 | 0.811270 | 7.612770e-51 | -8.615850e-47 |
Msa0370350 | Msa0532310 | -0.816492 | 5.377936e-52 | -8.615850e-47 |
Msa0384330 | Msa0532310 | -0.802129 | 6.493875e-49 | -8.615850e-47 |
Msa0387120 | Msa0532310 | -0.800457 | 1.428465e-48 | -8.615850e-47 |
Msa0463890 | Msa0532310 | 0.810598 | 1.064573e-50 | -8.615850e-47 |
Msa0471890 | Msa0532310 | -0.802734 | 4.874977e-49 | -8.615850e-47 |
Msa0474220 | Msa0532310 | -0.802428 | 5.637494e-49 | -8.615850e-47 |
Msa0475700 | Msa0532310 | -0.800730 | 1.256747e-48 | -8.615850e-47 |
Msa0249670 | Msa0532310 | -0.806203 | 9.220479e-50 | -8.615850e-47 |
Msa0258280 | Msa0532310 | -0.826738 | 2.300987e-54 | -8.615850e-47 |
Msa0273420 | Msa0532310 | 0.818454 | 1.943517e-52 | -8.615850e-47 |
Msa0297320 | Msa0532310 | -0.804544 | 2.053359e-49 | -8.615850e-47 |
Msa0305810 | Msa0532310 | -0.812410 | 4.300114e-51 | -8.615850e-47 |
Msa0313680 | Msa0532310 | 0.809037 | 2.305922e-50 | -8.615850e-47 |
Msa0340870 | Msa0532310 | -0.803755 | 2.996165e-49 | -8.615850e-47 |
Msa0357210 | Msa0532310 | -0.810578 | 1.075164e-50 | -8.615850e-47 |
Msa0522730 | Msa0532310 | -0.813498 | 2.482956e-51 | -8.615850e-47 |
Msa0532310 | Msa0540120 | -0.810802 | 9.617368e-51 | -8.615850e-47 |
Msa0532310 | Msa0581190 | -0.814590 | 1.425605e-51 | -8.615850e-47 |
Msa0532310 | Msa0587060 | -0.811238 | 7.738325e-51 | -8.615850e-47 |
Msa0532310 | Msa0589440 | 0.809098 | 2.238196e-50 | -8.615850e-47 |
Msa0532310 | Msa0598610 | -0.818076 | 2.367256e-52 | -8.615850e-47 |
Msa0532310 | Msa0619170 | -0.804494 | 2.102760e-49 | -8.615850e-47 |
Msa0532310 | Msa0624890 | -0.808665 | 2.769432e-50 | -8.615850e-47 |
Msa0532310 | Msa0659130 | -0.801172 | 1.020812e-48 | -8.615850e-47 |
Msa0532310 | Msa0665010 | -0.820365 | 7.128968e-53 | -8.615850e-47 |
Msa0532310 | Msa0667240 | 0.983181 | 4.776441e-157 | -8.615850e-47 |
Msa0532310 | Msa0674680 | -0.818074 | 2.369664e-52 | -8.615850e-47 |
Msa0532310 | Msa0677590 | -0.808805 | 2.586146e-50 | -8.615850e-47 |
Msa0532310 | Msa0681040 | -0.806209 | 9.194291e-50 | -8.615850e-47 |
Msa0532310 | Msa0697230 | -0.813689 | 2.254160e-51 | -8.615850e-47 |
Msa0532310 | Msa0704750 | -0.814667 | 1.370851e-51 | -8.615850e-47 |
Msa0532310 | Msa0721260 | 0.806890 | 6.603782e-50 | -8.615850e-47 |
Msa0532310 | Msa0742690 | -0.814025 | 1.900876e-51 | -8.615850e-47 |
Msa0532310 | Msa0753410 | 0.817210 | 3.711206e-52 | -8.615850e-47 |
Msa0532310 | Msa0779830 | -0.808418 | 3.128100e-50 | -8.615850e-47 |
Msa0532310 | Msa0791700 | -0.806771 | 6.997008e-50 | -8.615850e-47 |
Msa0532310 | Msa0795330 | 0.802108 | 6.560521e-49 | -8.615850e-47 |
Msa0532310 | Msa0827560 | -0.820967 | 5.184531e-53 | -8.615850e-47 |
Msa0532310 | Msa0862750 | -0.820379 | 7.077004e-53 | -8.615850e-47 |
Msa0532310 | Msa0872800 | -0.804834 | 1.786188e-49 | -8.615850e-47 |
Msa0532310 | Msa0883880 | -0.810862 | 9.334723e-51 | -8.615850e-47 |
Msa0532310 | Msa1024120 | -0.826937 | 2.062683e-54 | -8.615850e-47 |
Msa0532310 | Msa1041620 | -0.847238 | 1.312045e-59 | -8.615850e-47 |
Msa0532310 | Msa1081650 | -0.824740 | 6.853442e-54 | -8.615850e-47 |
Msa0532310 | Msa1107950 | -0.825578 | 4.344024e-54 | -8.615850e-47 |
Msa0532310 | Msa1126980 | -0.811231 | 7.762704e-51 | -8.615850e-47 |
Msa0532310 | Msa1166020 | -0.814799 | 1.281427e-51 | -8.615850e-47 |
Msa0532310 | Msa1166520 | -0.836102 | 1.139096e-56 | -8.615850e-47 |
Msa0532310 | Msa1175820 | -0.801725 | 7.864248e-49 | -8.615850e-47 |
Msa0532310 | Msa1182960 | -0.814758 | 1.309028e-51 | -8.615850e-47 |
Msa0532310 | Msa1197210 | -0.810374 | 1.190054e-50 | -8.615850e-47 |
Msa0532310 | Msa1223600 | -0.806919 | 6.511717e-50 | -8.615850e-47 |
Msa0532310 | Msa1235990 | -0.801133 | 1.039594e-48 | -8.615850e-47 |
Msa0532310 | Msa1251890 | -0.828647 | 8.004479e-55 | -8.615850e-47 |
Msa0532310 | Msa1252220 | -0.800531 | 1.379519e-48 | -8.615850e-47 |
Msa0532310 | Msa1258200 | -0.807959 | 3.917700e-50 | -8.615850e-47 |
Msa0532310 | Msa1267800 | -0.817858 | 2.652127e-52 | -8.615850e-47 |
Msa0532310 | Msa1279240 | -0.806534 | 7.852778e-50 | -8.615850e-47 |
Msa0532310 | Msa1316090 | -0.814458 | 1.525326e-51 | -8.615850e-47 |
Msa0532310 | Msa1336350 | -0.800472 | 1.418540e-48 | -8.615850e-47 |
Msa0532310 | Msa1349490 | -0.804643 | 1.957524e-49 | -8.615850e-47 |
Msa0532310 | Msa1376520 | 0.815714 | 8.025768e-52 | -8.615850e-47 |
Msa0532310 | Msa1395700 | -0.839088 | 1.952979e-57 | -8.615850e-47 |
Msa0532310 | Msa1396310 | -0.816031 | 6.818476e-52 | -8.615850e-47 |
Msa0532310 | Msa1398110 | 0.802762 | 4.808885e-49 | -8.615850e-47 |
Msa0532310 | Msa1400600 | -0.804374 | 2.227275e-49 | -8.615850e-47 |
Msa0532310 | Msa1412830 | -0.816506 | 5.339657e-52 | -8.615850e-47 |
Msa0532310 | Msa1426690 | -0.831583 | 1.537587e-55 | -8.615850e-47 |
Msa0532310 | Msa1433060 | -0.821794 | 3.339995e-53 | -8.615850e-47 |
Msa0532310 | Msa1437650 | -0.800724 | 1.260173e-48 | -8.615850e-47 |
Msa0532310 | Msa1449510 | -0.809273 | 2.053343e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532310 | MtrunA17_Chr4g0005781 | 99.776 | 447 | 1 | 0 | 1 | 447 | 1 | 447 | 0.0 | 919 |
Msa0532310 | MtrunA17_Chr1g0200071 | 96.429 | 448 | 15 | 1 | 1 | 447 | 1 | 448 | 0.0 | 891 |
Msa0532310 | MtrunA17_Chr1g0200091 | 96.429 | 448 | 15 | 1 | 1 | 447 | 1 | 448 | 0.0 | 891 |
Msa0532310 | MtrunA17_Chr1g0200121 | 96.205 | 448 | 16 | 1 | 1 | 447 | 1 | 448 | 0.0 | 890 |
Msa0532310 | MtrunA17_Chr6g0458111 | 96.083 | 434 | 17 | 0 | 1 | 434 | 1 | 434 | 0.0 | 874 |
Msa0532310 | MtrunA17_Chr6g0458091 | 96.083 | 434 | 17 | 0 | 1 | 434 | 1 | 434 | 0.0 | 874 |
Msa0532310 | MtrunA17_Chr1g0150331 | 88.248 | 451 | 23 | 3 | 1 | 447 | 1 | 425 | 0.0 | 800 |
Msa0532310 | MtrunA17_Chr1g0193591 | 82.258 | 434 | 77 | 0 | 1 | 434 | 1 | 434 | 0.0 | 743 |
Msa0532310 | MtrunA17_Chr1g0204031 | 80.963 | 436 | 78 | 3 | 1 | 436 | 1 | 431 | 0.0 | 731 |
Msa0532310 | MtrunA17_Chr1g0156421 | 78.802 | 434 | 92 | 0 | 1 | 434 | 1 | 434 | 0.0 | 726 |
Msa0532310 | MtrunA17_Chr8g0340771 | 79.065 | 449 | 91 | 2 | 1 | 446 | 1 | 449 | 0.0 | 717 |
Msa0532310 | MtrunA17_Chr5g0415391 | 72.475 | 396 | 109 | 0 | 39 | 434 | 1 | 396 | 0.0 | 595 |
Msa0532310 | MtrunA17_Chr1g0196251 | 69.231 | 403 | 96 | 2 | 4 | 405 | 5 | 380 | 0.0 | 574 |
Msa0532310 | MtrunA17_Chr8g0336511 | 78.287 | 327 | 70 | 1 | 1 | 326 | 66 | 392 | 0.0 | 543 |
Msa0532310 | MtrunA17_Chr2g0319341 | 74.924 | 327 | 80 | 1 | 102 | 426 | 1 | 327 | 0.0 | 518 |
Msa0532310 | MtrunA17_Chr2g0298371 | 68.923 | 325 | 82 | 2 | 102 | 424 | 1 | 308 | 7.84e-163 | 461 |
Msa0532310 | MtrunA17_Chr8g0340371 | 69.710 | 241 | 70 | 2 | 1 | 240 | 1 | 239 | 2.10e-118 | 345 |
Msa0532310 | MtrunA17_Chr1g0210931 | 61.074 | 298 | 61 | 4 | 155 | 446 | 1 | 249 | 8.19e-114 | 335 |
Msa0532310 | MtrunA17_Chr2g0318291 | 71.239 | 226 | 60 | 3 | 1 | 223 | 1 | 224 | 5.35e-112 | 328 |
Msa0532310 | MtrunA17_Chr6g0483121 | 38.173 | 427 | 256 | 5 | 5 | 426 | 89 | 512 | 1.09e-98 | 305 |
Msa0532310 | MtrunA17_Chr8g0392641 | 37.500 | 432 | 260 | 6 | 4 | 429 | 143 | 570 | 2.84e-93 | 293 |
Msa0532310 | MtrunA17_Chr1g0204041 | 86.452 | 155 | 21 | 0 | 1 | 155 | 1 | 155 | 1.09e-90 | 272 |
Msa0532310 | MtrunA17_Chr8g0380091 | 36.000 | 425 | 264 | 5 | 7 | 426 | 275 | 696 | 1.34e-90 | 289 |
Msa0532310 | MtrunA17_Chr1g0200111 | 74.576 | 177 | 35 | 1 | 264 | 430 | 1 | 177 | 3.22e-86 | 261 |
Msa0532310 | MtrunA17_Chr2g0318281 | 65.672 | 201 | 63 | 1 | 243 | 443 | 5 | 199 | 1.88e-84 | 258 |
Msa0532310 | MtrunA17_Chr1g0156411 | 81.429 | 140 | 26 | 0 | 6 | 145 | 10 | 149 | 8.67e-79 | 241 |
Msa0532310 | MtrunA17_Chr8g0340361 | 61.957 | 184 | 54 | 2 | 264 | 432 | 1 | 183 | 9.06e-68 | 214 |
Msa0532310 | MtrunA17_Chr4g0026961 | 54.124 | 194 | 73 | 4 | 195 | 385 | 32 | 212 | 6.84e-59 | 192 |
Msa0532310 | MtrunA17_Chr4g0026961 | 76.190 | 42 | 10 | 0 | 1 | 42 | 1 | 42 | 6.43e-13 | 67.8 |
Msa0532310 | MtrunA17_Chr2g0298381 | 77.778 | 99 | 22 | 0 | 1 | 99 | 1 | 99 | 6.12e-48 | 159 |
Msa0532310 | MtrunA17_Chr8g0341021 | 76.471 | 102 | 24 | 0 | 3 | 104 | 4 | 105 | 1.16e-47 | 159 |
Msa0532310 | MtrunA17_Chr7g0259481 | 30.137 | 438 | 246 | 14 | 3 | 429 | 59 | 447 | 5.24e-45 | 162 |
Msa0532310 | MtrunA17_Chr3g0116821 | 29.730 | 444 | 251 | 15 | 3 | 429 | 88 | 487 | 8.78e-40 | 149 |
Msa0532310 | MtrunA17_Chr1g0211481 | 79.747 | 79 | 16 | 0 | 5 | 83 | 4 | 82 | 3.42e-36 | 129 |
Msa0532310 | MtrunA17_Chr2g0319351 | 82.192 | 73 | 13 | 0 | 5 | 77 | 5 | 77 | 3.79e-35 | 125 |
Msa0532310 | MtrunA17_Chr1g0200101 | 87.692 | 65 | 8 | 0 | 172 | 236 | 49 | 113 | 1.38e-34 | 125 |
Msa0532310 | MtrunA17_Chr1g0200101 | 73.469 | 49 | 13 | 0 | 21 | 69 | 2 | 50 | 8.34e-17 | 76.3 |
Msa0532310 | MtrunA17_Chr2g0287231 | 32.389 | 247 | 135 | 6 | 1 | 244 | 10 | 227 | 4.53e-31 | 119 |
Msa0532310 | MtrunA17_Chr8g0341041 | 35.047 | 214 | 76 | 5 | 213 | 426 | 2 | 152 | 7.31e-29 | 111 |
Msa0532310 | MtrunA17_Chr7g0261801 | 68.182 | 66 | 18 | 1 | 155 | 220 | 1 | 63 | 7.90e-24 | 94.7 |
Msa0532310 | MtrunA17_Chr3g0130991 | 26.471 | 272 | 143 | 9 | 9 | 272 | 85 | 307 | 4.52e-13 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532310 | AT1G07920.1 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
Msa0532310 | AT1G07940.4 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
Msa0532310 | AT1G07940.1 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
Msa0532310 | AT1G07940.2 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
Msa0532310 | AT1G07940.3 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
Msa0532310 | AT5G60390.3 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
Msa0532310 | AT5G60390.1 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
Msa0532310 | AT5G60390.2 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
Msa0532310 | AT1G07930.1 | 93.946 | 446 | 27 | 0 | 1 | 446 | 1 | 446 | 0.0 | 877 |
Msa0532310 | AT1G07930.2 | 98.039 | 255 | 5 | 0 | 1 | 255 | 1 | 255 | 0.0 | 528 |
Msa0532310 | AT1G07930.2 | 86.207 | 116 | 16 | 0 | 331 | 446 | 254 | 369 | 1.70e-64 | 212 |
Msa0532310 | AT1G18070.1 | 37.176 | 425 | 259 | 5 | 5 | 424 | 99 | 520 | 2.88e-95 | 297 |
Msa0532310 | AT1G18070.2 | 37.176 | 425 | 259 | 5 | 5 | 424 | 99 | 520 | 2.88e-95 | 297 |
Msa0532310 | AT1G18070.3 | 36.468 | 436 | 258 | 6 | 5 | 424 | 99 | 531 | 3.34e-92 | 289 |
Msa0532310 | AT5G10630.1 | 35.529 | 425 | 266 | 5 | 7 | 426 | 239 | 660 | 7.86e-91 | 289 |
Msa0532310 | AT5G10630.5 | 35.529 | 425 | 266 | 5 | 7 | 426 | 240 | 661 | 8.04e-91 | 289 |
Msa0532310 | AT5G10630.2 | 35.529 | 425 | 266 | 5 | 7 | 426 | 240 | 661 | 8.04e-91 | 289 |
Msa0532310 | AT5G10630.3 | 35.529 | 425 | 266 | 5 | 7 | 426 | 310 | 731 | 2.95e-90 | 290 |
Msa0532310 | AT5G10630.4 | 35.529 | 425 | 266 | 5 | 7 | 426 | 315 | 736 | 3.88e-90 | 289 |
Msa0532310 | AT1G35550.1 | 75.962 | 104 | 25 | 0 | 335 | 438 | 1 | 104 | 2.39e-51 | 169 |
Msa0532310 | AT4G20360.1 | 30.575 | 435 | 253 | 10 | 3 | 426 | 75 | 471 | 3.06e-44 | 161 |
Msa0532310 | AT4G20360.2 | 30.575 | 435 | 253 | 10 | 3 | 426 | 75 | 471 | 3.06e-44 | 161 |
Msa0532310 | AT4G02930.1 | 29.841 | 439 | 247 | 15 | 3 | 429 | 63 | 452 | 4.52e-43 | 157 |
Msa0532310 | AT2G31060.3 | 25.000 | 264 | 160 | 8 | 9 | 263 | 61 | 295 | 4.34e-12 | 68.6 |
Msa0532310 | AT5G39900.1 | 25.839 | 298 | 158 | 8 | 4 | 288 | 64 | 311 | 6.58e-12 | 68.2 |
Msa0532310 | AT5G08650.2 | 26.518 | 313 | 172 | 13 | 9 | 311 | 88 | 352 | 1.17e-11 | 67.4 |
Msa0532310 | AT5G08650.1 | 26.518 | 313 | 172 | 13 | 9 | 311 | 88 | 352 | 1.24e-11 | 67.4 |
Msa0532310 | AT2G31060.2 | 24.615 | 260 | 162 | 7 | 9 | 263 | 61 | 291 | 5.58e-11 | 65.1 |
Find 147 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGCACGGTTCATTTCTTCT+TGG | 0.216911 | 4_1:-6321684 | None:intergenic |
GCTCTCCTTGCTTTCACTCT+TGG | 0.289982 | 4_1:+6320663 | Msa0532310:CDS |
ATCTCCATTCTTCAGGAACT+TGG | 0.311336 | 4_1:-6321489 | None:intergenic |
GTCGATCTAGAACCCAGTTC+TGG | 0.313400 | 4_1:-6321844 | None:intergenic |
GTCTACAAGATTGGAGGAAT+TGG | 0.315206 | 4_1:+6321074 | Msa0532310:CDS |
TGTGATGTTTAAATCTTTGC+TGG | 0.320387 | 4_1:+6322005 | Msa0532310:three_prime_UTR |
ACTTGCTGCTTGTAAAATTC+AGG | 0.320820 | 4_1:-6321925 | None:intergenic |
CACATTAACATTGTTGTCAT+TGG | 0.329838 | 4_1:+6320273 | Msa0532310:CDS |
TTCATTAAGAACATGATTAC+TGG | 0.340521 | 4_1:+6320546 | Msa0532310:CDS |
TCTCTCACTGAGGCACTTCC+CGG | 0.352595 | 4_1:+6321209 | Msa0532310:CDS |
TACCAGCATCTCCATTCTTC+AGG | 0.357413 | 4_1:-6321496 | None:intergenic |
ATTCCATTTGTTCCCATCTC+TGG | 0.372946 | 4_1:+6320915 | Msa0532310:CDS |
GCAAAAGTCACCACCATTCC+AGG | 0.373840 | 4_1:-6321137 | None:intergenic |
ATACCTGCTCTTGGAGTACT+TGG | 0.376650 | 4_1:-6320832 | None:intergenic |
ACTAAGATTGACAGGCGTTC+TGG | 0.381039 | 4_1:+6321446 | Msa0532310:CDS |
TGCGTCAAACTGTGGCTGTT+GGG | 0.385555 | 4_1:+6321603 | Msa0532310:CDS |
AAGTTAGCAGCCTCCTTGGC+AGG | 0.392934 | 4_1:-6321314 | None:intergenic |
GTCATTGGCCATGTCGACTC+TGG | 0.395247 | 4_1:+6320288 | Msa0532310:CDS |
CTATATTTGTGTTTATTGCT+TGG | 0.396453 | 4_1:+6321982 | Msa0532310:three_prime_UTR |
CACCACCATTCCAGGTTTCA+TGG | 0.400023 | 4_1:-6321129 | None:intergenic |
CTCCTTGGCAGGGTCATCCT+TGG | 0.402495 | 4_1:-6321303 | None:intergenic |
CCAGTTCTGGGAACAAAAGC+TGG | 0.408651 | 4_1:-6321831 | None:intergenic |
CTTAATGAAATCTCTGTGTC+CGG | 0.412752 | 4_1:-6320532 | None:intergenic |
AAGGATAATGGGTAAGGAAA+AGG | 0.414354 | 4_1:+6320248 | Msa0532310:exon |
ATCAAATAAATGAGCCTAAG+AGG | 0.421338 | 4_1:+6321015 | Msa0532310:CDS |
ATGAATCACCCTGGCCAGAT+TGG | 0.425183 | 4_1:+6321356 | Msa0532310:CDS |
TTCACGGGTCTGACCATCCT+TGG | 0.425447 | 4_1:-6320637 | None:intergenic |
ATAGCCAACCTTCTTCATAT+AGG | 0.426065 | 4_1:-6320880 | None:intergenic |
GGCTTGTCTGATGGCCTCTT+AGG | 0.432559 | 4_1:-6321029 | None:intergenic |
CACCCTGGCCAGATTGGAAA+TGG | 0.432985 | 4_1:+6321362 | Msa0532310:CDS |
GCCCCTCCGACTACCACTTC+AGG | 0.433104 | 4_1:+6321049 | Msa0532310:CDS |
AATTTCATCATACCTGCTCT+TGG | 0.433341 | 4_1:-6320841 | None:intergenic |
GAGGTGTGGCAGTCAAGCAC+AGG | 0.434332 | 4_1:-6321392 | None:intergenic |
CTCATCATTGATTCCACCAC+TGG | 0.434917 | 4_1:+6320594 | Msa0532310:CDS |
GGGCATAGCCATTTCCAATC+TGG | 0.448022 | 4_1:-6321370 | None:intergenic |
AAACCAGAGATGGGAACAAA+TGG | 0.449170 | 4_1:-6320918 | None:intergenic |
AGCGTTCATTCAAGTATGCT+TGG | 0.450783 | 4_1:+6320406 | Msa0532310:CDS |
TGTGGCTGTTGGGGTTATCA+AGG | 0.455009 | 4_1:+6321613 | Msa0532310:CDS |
CTTCAGGATGTCTACAAGAT+TGG | 0.458119 | 4_1:+6321065 | Msa0532310:CDS |
TTAGTTATCTTAACAGTGCC+AGG | 0.458448 | 4_1:-6321653 | None:intergenic |
GCGTTCATTCAAGTATGCTT+GGG | 0.461276 | 4_1:+6320407 | Msa0532310:CDS |
AGTCTCAACAACCATGGGCT+TGG | 0.462350 | 4_1:-6321537 | None:intergenic |
ATTTCACTGCCAAGAATGTC+AGG | 0.463669 | 4_1:+6322049 | Msa0532310:three_prime_UTR |
CTCAACAACCATGGGCTTGG+TGG | 0.464097 | 4_1:-6321534 | None:intergenic |
TCGATCTAGAACCCAGTTCT+GGG | 0.472715 | 4_1:-6321843 | None:intergenic |
TAGCCATTTCCAATCTGGCC+AGG | 0.474048 | 4_1:-6321365 | None:intergenic |
TTAATGAAATCTCTGTGTCC+GGG | 0.484998 | 4_1:-6320531 | None:intergenic |
AGGGTCATCCTTGGTGTTTG+AGG | 0.487546 | 4_1:-6321294 | None:intergenic |
TACAAATCTTGACTGGTACA+AGG | 0.490199 | 4_1:+6320968 | Msa0532310:CDS |
GAGCCCAAGTTCCTGAAGAA+TGG | 0.491587 | 4_1:+6321485 | Msa0532310:CDS |
TGTGAAGTTAGCAGCCTCCT+TGG | 0.493959 | 4_1:-6321318 | None:intergenic |
AGTCGGAGGGGCTTGTCTGA+TGG | 0.496444 | 4_1:-6321038 | None:intergenic |
ATCTCCCTCAAAACCAGAGA+TGG | 0.496573 | 4_1:-6320928 | None:intergenic |
GATTGACAGGCGTTCTGGTA+AGG | 0.497183 | 4_1:+6321451 | Msa0532310:CDS |
ATCATTGATTCCACCACTGG+TGG | 0.510309 | 4_1:+6320597 | Msa0532310:CDS |
AGCTCGTTACTAAGATTGAC+AGG | 0.513858 | 4_1:+6321438 | Msa0532310:CDS |
TGAGAACAGCACAATCAGCT+TGG | 0.516820 | 4_1:-6320575 | None:intergenic |
GAGAACAGCACAATCAGCTT+GGG | 0.517298 | 4_1:-6320574 | None:intergenic |
TATCAAGGGTGTGGAGAAGA+AGG | 0.517386 | 4_1:+6321628 | Msa0532310:CDS |
ACTTCAGTTTGCAGTCCAGT+TGG | 0.517541 | 4_1:-6321161 | None:intergenic |
CAAGAGCCTCAAGAAGTGTT+GGG | 0.518886 | 4_1:-6320992 | None:intergenic |
ATTAAATCCCACATTGTCAC+CGG | 0.519224 | 4_1:-6321228 | None:intergenic |
CTTGGAGTACTTGGGTGTAG+TGG | 0.520336 | 4_1:-6320823 | None:intergenic |
TGTTAAGAATGTTTCTGTCA+AGG | 0.521267 | 4_1:+6321250 | Msa0532310:CDS |
CAGGATGTCTACAAGATTGG+AGG | 0.523217 | 4_1:+6321068 | Msa0532310:CDS |
TCTCCATTCTTCAGGAACTT+GGG | 0.527363 | 4_1:-6321488 | None:intergenic |
TTGCTTTCACTCTTGGTGTG+AGG | 0.528420 | 4_1:+6320670 | Msa0532310:CDS |
TTCCTGAAGAATGGAGATGC+TGG | 0.528428 | 4_1:+6321494 | Msa0532310:CDS |
AGTTTCATCCTATATGAAGA+AGG | 0.530606 | 4_1:+6320872 | Msa0532310:CDS |
TCAAGAGCCTCAAGAAGTGT+TGG | 0.532468 | 4_1:-6320993 | None:intergenic |
CTCAAGGCTGAGCGTGAAAG+AGG | 0.533500 | 4_1:+6320441 | Msa0532310:CDS |
TCATTGGCCATGTCGACTCT+GGG | 0.536467 | 4_1:+6320289 | Msa0532310:CDS |
AGCAAACTTGACAGCAATGT+GGG | 0.541075 | 4_1:-6321414 | None:intergenic |
CCAGTCTCAACACGTCCGAC+AGG | 0.541163 | 4_1:-6321104 | None:intergenic |
CCTGTCGGACGTGTTGAGAC+TGG | 0.541718 | 4_1:+6321104 | Msa0532310:CDS |
TTCTCTGAATATCCTCCACT+TGG | 0.543785 | 4_1:+6321560 | Msa0532310:CDS |
AGGTGTGGCAGTCAAGCACA+GGG | 0.544526 | 4_1:-6321391 | None:intergenic |
TGCACTGTCATTGATGCCCC+CGG | 0.544718 | 4_1:+6320513 | Msa0532310:CDS |
TCATCCTATATGAAGAAGGT+TGG | 0.544820 | 4_1:+6320876 | Msa0532310:CDS |
CACTTGATCTACAAGCTTGG+AGG | 0.545798 | 4_1:+6320330 | Msa0532310:CDS |
CAAGAAGAAATGAACCGTGC+AGG | 0.548923 | 4_1:+6321685 | Msa0532310:exon |
GGTCACTTGATCTACAAGCT+TGG | 0.555547 | 4_1:+6320327 | Msa0532310:CDS |
ATGCGTCAAACTGTGGCTGT+TGG | 0.557227 | 4_1:+6321602 | Msa0532310:CDS |
GAAGCTGGTATTTCCAAGGA+TGG | 0.557613 | 4_1:+6320624 | Msa0532310:CDS |
TCAACAACCATGGGCTTGGT+GGG | 0.557624 | 4_1:-6321533 | None:intergenic |
AAGCAAGGAGAGCATGTTCA+CGG | 0.559179 | 4_1:-6320653 | None:intergenic |
AGCTTCAAAACCACCAGTGG+TGG | 0.562107 | 4_1:-6320607 | None:intergenic |
TGTTGGGGTTATCAAGGGTG+TGG | 0.563472 | 4_1:+6321619 | Msa0532310:CDS |
GCATATCTCTGACAGCAAAA+CGG | 0.563498 | 4_1:-6321583 | None:intergenic |
ACAAATCTTGACTGGTACAA+GGG | 0.563768 | 4_1:+6320969 | Msa0532310:CDS |
GTGGCTGTTGGGGTTATCAA+GGG | 0.565604 | 4_1:+6321614 | Msa0532310:CDS |
CAGGTATGATGAAATTGTGA+AGG | 0.569288 | 4_1:+6320848 | Msa0532310:CDS |
TCTGGGAAGTCAACTACCAC+TGG | 0.570179 | 4_1:+6320306 | Msa0532310:CDS |
TTGGGTTCTTGACAAGCTCA+AGG | 0.572280 | 4_1:+6320425 | Msa0532310:CDS |
AGCAAGGAGAGCATGTTCAC+GGG | 0.572470 | 4_1:-6320652 | None:intergenic |
CACCCAAGTACTCCAAGAGC+AGG | 0.574869 | 4_1:+6320829 | Msa0532310:CDS |
ATCCTGAAGTGGTAGTCGGA+GGG | 0.576252 | 4_1:-6321051 | None:intergenic |
GATGATTCCCACCAAGCCCA+TGG | 0.580619 | 4_1:+6321526 | Msa0532310:CDS |
TAATGAAATCTCTGTGTCCG+GGG | 0.584658 | 4_1:-6320530 | None:intergenic |
TACCTGCTCTTGGAGTACTT+GGG | 0.587772 | 4_1:-6320831 | None:intergenic |
GCGTCAAACTGTGGCTGTTG+GGG | 0.590275 | 4_1:+6321604 | Msa0532310:CDS |
GAACAAAAGCTGGGAGATGA+CGG | 0.593828 | 4_1:-6321821 | None:intergenic |
GAGAAAGTCTCAACAACCAT+GGG | 0.598729 | 4_1:-6321542 | None:intergenic |
TTGACTTCCCAGAGTCGACA+TGG | 0.600770 | 4_1:-6320296 | None:intergenic |
TTGACAAGCGTGTGATCGAG+AGG | 0.602725 | 4_1:+6320355 | Msa0532310:CDS |
GGCACTTCCCGGTGACAATG+TGG | 0.604709 | 4_1:+6321220 | Msa0532310:CDS |
CAGTTCTGGGAACAAAAGCT+GGG | 0.605768 | 4_1:-6321830 | None:intergenic |
TCTCCCTCAAAACCAGAGAT+GGG | 0.607478 | 4_1:-6320927 | None:intergenic |
TCCTGAAGTGGTAGTCGGAG+GGG | 0.608492 | 4_1:-6321050 | None:intergenic |
AGCGCTCTACAAATCTTGAC+TGG | 0.610562 | 4_1:+6320961 | Msa0532310:CDS |
GGTGTGGAGAAGAAGGAACC+TGG | 0.612825 | 4_1:+6321635 | Msa0532310:CDS |
AGAGAAAGTCTCAACAACCA+TGG | 0.614767 | 4_1:-6321543 | None:intergenic |
GCACTTCCCGGTGACAATGT+GGG | 0.616830 | 4_1:+6321221 | Msa0532310:CDS |
GCAAACTGAAGTCAAGTCTG+TGG | 0.619692 | 4_1:+6321172 | Msa0532310:CDS |
TCACACCAAGAGTGAAAGCA+AGG | 0.621193 | 4_1:-6320668 | None:intergenic |
ATCTTGTAGACATCCTGAAG+TGG | 0.621388 | 4_1:-6321062 | None:intergenic |
CAAGGGCCCAACACTTCTTG+AGG | 0.622743 | 4_1:+6320986 | Msa0532310:CDS |
AGCCATTTCCAATCTGGCCA+GGG | 0.623271 | 4_1:-6321364 | None:intergenic |
ACAGCAAAACGGCCAAGTGG+AGG | 0.624787 | 4_1:-6321572 | None:intergenic |
AGAACTGGGTTCTAGATCGA+CGG | 0.633467 | 4_1:+6321846 | Msa0532310:three_prime_UTR |
CACCAAGGATGACCCTGCCA+AGG | 0.633966 | 4_1:+6321301 | Msa0532310:CDS |
GGAATTGGAACTGTTCCTGT+CGG | 0.634263 | 4_1:+6321089 | Msa0532310:CDS |
CATCCTGAAGTGGTAGTCGG+AGG | 0.637451 | 4_1:-6321052 | None:intergenic |
AGACATCCTGAAGTGGTAGT+CGG | 0.638051 | 4_1:-6321055 | None:intergenic |
CAGCAAACTTGACAGCAATG+TGG | 0.638328 | 4_1:-6321415 | None:intergenic |
AGTTAGCAGCCTCCTTGGCA+GGG | 0.640865 | 4_1:-6321313 | None:intergenic |
GAGACTGGTACCATGAAACC+TGG | 0.643102 | 4_1:+6321119 | Msa0532310:CDS |
AATGATCTGCTGCTGCAACA+AGG | 0.643325 | 4_1:+6320695 | Msa0532310:CDS |
CAAGGATGACCCTGCCAAGG+AGG | 0.650706 | 4_1:+6321304 | Msa0532310:CDS |
TGACAGCAATGTGGGAGGTG+TGG | 0.650950 | 4_1:-6321406 | None:intergenic |
AATGAAATCTCTGTGTCCGG+GGG | 0.659564 | 4_1:-6320529 | None:intergenic |
ACCAGCTTCAAAACCACCAG+TGG | 0.663026 | 4_1:-6320610 | None:intergenic |
TCTGTCAAGGATCTCAAGCG+TGG | 0.663761 | 4_1:+6321263 | Msa0532310:CDS |
TTAAATCCCACATTGTCACC+GGG | 0.665158 | 4_1:-6321227 | None:intergenic |
CAGAGATATGCGTCAAACTG+TGG | 0.666313 | 4_1:+6321595 | Msa0532310:CDS |
TTCTGGTAAGGAGATCGAGA+AGG | 0.668930 | 4_1:+6321463 | Msa0532310:CDS |
CTGACAGCAAAACGGCCAAG+TGG | 0.679918 | 4_1:-6321575 | None:intergenic |
GTGATTATCATGAATCACCC+TGG | 0.681230 | 4_1:+6321347 | Msa0532310:CDS |
TACCATGAAACCTGGAATGG+TGG | 0.682936 | 4_1:+6321127 | Msa0532310:CDS |
CTTGTAGATCAAGTGACCAG+TGG | 0.695213 | 4_1:-6320322 | None:intergenic |
AAACTTGACAGCAATGTGGG+AGG | 0.695398 | 4_1:-6321411 | None:intergenic |
TCACAATTGACATTGCTCTG+TGG | 0.708352 | 4_1:+6320466 | Msa0532310:CDS |
TGGTACCATGAAACCTGGAA+TGG | 0.712415 | 4_1:+6321124 | Msa0532310:CDS |
ACTGGGTTCTAGATCGACGG+TGG | 0.727144 | 4_1:+6321849 | Msa0532310:three_prime_UTR |
GGTGTGGCAGTCAAGCACAG+GGG | 0.731105 | 4_1:-6321390 | None:intergenic |
TTATGTTGCCTCAAACACCA+AGG | 0.751394 | 4_1:+6321286 | Msa0532310:CDS |
GCATCATGAATCTCTCACTG+AGG | 0.754777 | 4_1:+6321199 | Msa0532310:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTGTGTTTTTAAGCTTTTA+AGG | + | chr4_1:6320229-6320248 | Msa0532310:five_prime_UTR | 20.0% |
!!! | TTTTAAGCTTTTAAGGATAA+TGG | + | chr4_1:6320236-6320255 | Msa0532310:exon | 20.0% |
!!! | TTTAAGCTTTTAAGGATAAT+GGG | + | chr4_1:6320237-6320256 | Msa0532310:exon | 20.0% |
!! | ATAGTCGTTATTACAATAAA+TGG | + | chr4_1:6321729-6321748 | Msa0532310:intron | 20.0% |
!! | TTATTACAATAAATGGTTTG+TGG | + | chr4_1:6321736-6321755 | Msa0532310:intron | 20.0% |
!!! | TGTCTTATTAAGTTGTTTTT+CGG | + | chr4_1:6321779-6321798 | Msa0532310:intron | 20.0% |
!!! | TTTGTGTTTTTAAGCTTTTA+AGG | + | chr4_1:6320229-6320248 | Msa0532310:five_prime_UTR | 20.0% |
!!! | TTTTAAGCTTTTAAGGATAA+TGG | + | chr4_1:6320236-6320255 | Msa0532310:exon | 20.0% |
!!! | TTTAAGCTTTTAAGGATAAT+GGG | + | chr4_1:6320237-6320256 | Msa0532310:exon | 20.0% |
!! | ATAGTCGTTATTACAATAAA+TGG | + | chr4_1:6321729-6321748 | Msa0532310:intron | 20.0% |
!! | TTATTACAATAAATGGTTTG+TGG | + | chr4_1:6321736-6321755 | Msa0532310:intron | 20.0% |
!!! | TGTCTTATTAAGTTGTTTTT+CGG | + | chr4_1:6321779-6321798 | Msa0532310:intron | 20.0% |
! | TAAAAACACAAAAAGTTCTG+CGG | - | chr4_1:6320221-6320240 | None:intergenic | 25.0% |
! | TTCATTAAGAACATGATTAC+TGG | + | chr4_1:6320546-6320565 | Msa0532310:CDS | 25.0% |
! | TAATCAAATGCAACTAAAGA+GGG | - | chr4_1:6320747-6320766 | None:intergenic | 25.0% |
! | ATAATCAAATGCAACTAAAG+AGG | - | chr4_1:6320748-6320767 | None:intergenic | 25.0% |
!! | TTTTTGATATCTTGAACAGA+TGG | + | chr4_1:6320797-6320816 | Msa0532310:intron | 25.0% |
!! | GAACAAATGGAATTTTATCT+GGG | - | chr4_1:6320908-6320927 | None:intergenic | 25.0% |
! | GATATTAAAAACAAATCAGC+AGG | - | chr4_1:6321958-6321977 | None:intergenic | 25.0% |
! | CTATATTTGTGTTTATTGCT+TGG | + | chr4_1:6321982-6322001 | Msa0532310:three_prime_UTR | 25.0% |
! | TAAAAACACAAAAAGTTCTG+CGG | - | chr4_1:6320221-6320240 | None:intergenic | 25.0% |
! | TTCATTAAGAACATGATTAC+TGG | + | chr4_1:6320546-6320565 | Msa0532310:CDS | 25.0% |
! | TAATCAAATGCAACTAAAGA+GGG | - | chr4_1:6320747-6320766 | None:intergenic | 25.0% |
! | ATAATCAAATGCAACTAAAG+AGG | - | chr4_1:6320748-6320767 | None:intergenic | 25.0% |
!! | TTTTTGATATCTTGAACAGA+TGG | + | chr4_1:6320797-6320816 | Msa0532310:intron | 25.0% |
!! | GAACAAATGGAATTTTATCT+GGG | - | chr4_1:6320908-6320927 | None:intergenic | 25.0% |
! | GATATTAAAAACAAATCAGC+AGG | - | chr4_1:6321958-6321977 | None:intergenic | 25.0% |
! | CTATATTTGTGTTTATTGCT+TGG | + | chr4_1:6321982-6322001 | Msa0532310:three_prime_UTR | 25.0% |
CACATTAACATTGTTGTCAT+TGG | + | chr4_1:6320273-6320292 | Msa0532310:CDS | 30.0% | |
AATCAAATGCAACTAAAGAG+GGG | - | chr4_1:6320746-6320765 | None:intergenic | 30.0% | |
AGTTTCATCCTATATGAAGA+AGG | + | chr4_1:6320872-6320891 | Msa0532310:CDS | 30.0% | |
! | GGAACAAATGGAATTTTATC+TGG | - | chr4_1:6320909-6320928 | None:intergenic | 30.0% |
ATCAAATAAATGAGCCTAAG+AGG | + | chr4_1:6321015-6321034 | Msa0532310:CDS | 30.0% | |
! | TGTTAAGAATGTTTCTGTCA+AGG | + | chr4_1:6321250-6321269 | Msa0532310:CDS | 30.0% |
TGTGATGTTTAAATCTTTGC+TGG | + | chr4_1:6322005-6322024 | Msa0532310:three_prime_UTR | 30.0% | |
CACATTAACATTGTTGTCAT+TGG | + | chr4_1:6320273-6320292 | Msa0532310:CDS | 30.0% | |
AATCAAATGCAACTAAAGAG+GGG | - | chr4_1:6320746-6320765 | None:intergenic | 30.0% | |
AGTTTCATCCTATATGAAGA+AGG | + | chr4_1:6320872-6320891 | Msa0532310:CDS | 30.0% | |
! | GGAACAAATGGAATTTTATC+TGG | - | chr4_1:6320909-6320928 | None:intergenic | 30.0% |
ATCAAATAAATGAGCCTAAG+AGG | + | chr4_1:6321015-6321034 | Msa0532310:CDS | 30.0% | |
! | TGTTAAGAATGTTTCTGTCA+AGG | + | chr4_1:6321250-6321269 | Msa0532310:CDS | 30.0% |
TGTGATGTTTAAATCTTTGC+TGG | + | chr4_1:6322005-6322024 | Msa0532310:three_prime_UTR | 30.0% | |
!!! | GCTTTTAAGGATAATGGGTA+AGG | + | chr4_1:6320242-6320261 | Msa0532310:exon | 35.0% |
!! | AAGGATAATGGGTAAGGAAA+AGG | + | chr4_1:6320248-6320267 | Msa0532310:exon | 35.0% |
TTAATGAAATCTCTGTGTCC+GGG | - | chr4_1:6320534-6320553 | None:intergenic | 35.0% | |
CTTAATGAAATCTCTGTGTC+CGG | - | chr4_1:6320535-6320554 | None:intergenic | 35.0% | |
!!! | TTTTGAAGCTGGTATTTCCA+AGG | + | chr4_1:6320620-6320639 | Msa0532310:CDS | 35.0% |
AATTTCATCATACCTGCTCT+TGG | - | chr4_1:6320844-6320863 | None:intergenic | 35.0% | |
CAGGTATGATGAAATTGTGA+AGG | + | chr4_1:6320848-6320867 | Msa0532310:CDS | 35.0% | |
TCATCCTATATGAAGAAGGT+TGG | + | chr4_1:6320876-6320895 | Msa0532310:CDS | 35.0% | |
ATAGCCAACCTTCTTCATAT+AGG | - | chr4_1:6320883-6320902 | None:intergenic | 35.0% | |
TACAAATCTTGACTGGTACA+AGG | + | chr4_1:6320968-6320987 | Msa0532310:CDS | 35.0% | |
ACAAATCTTGACTGGTACAA+GGG | + | chr4_1:6320969-6320988 | Msa0532310:CDS | 35.0% | |
ATTAAATCCCACATTGTCAC+CGG | - | chr4_1:6321231-6321250 | None:intergenic | 35.0% | |
TTAGTTATCTTAACAGTGCC+AGG | - | chr4_1:6321656-6321675 | None:intergenic | 35.0% | |
! | ACTTGCTGCTTGTAAAATTC+AGG | - | chr4_1:6321928-6321947 | None:intergenic | 35.0% |
! | TTTTACAAGCAGCAAGTTTC+AGG | + | chr4_1:6321931-6321950 | Msa0532310:three_prime_UTR | 35.0% |
AAAAATGCTCCTGACATTCT+TGG | - | chr4_1:6322061-6322080 | None:intergenic | 35.0% | |
!!! | GCTTTTAAGGATAATGGGTA+AGG | + | chr4_1:6320242-6320261 | Msa0532310:exon | 35.0% |
!! | AAGGATAATGGGTAAGGAAA+AGG | + | chr4_1:6320248-6320267 | Msa0532310:exon | 35.0% |
TTAATGAAATCTCTGTGTCC+GGG | - | chr4_1:6320534-6320553 | None:intergenic | 35.0% | |
CTTAATGAAATCTCTGTGTC+CGG | - | chr4_1:6320535-6320554 | None:intergenic | 35.0% | |
!!! | TTTTGAAGCTGGTATTTCCA+AGG | + | chr4_1:6320620-6320639 | Msa0532310:CDS | 35.0% |
AATTTCATCATACCTGCTCT+TGG | - | chr4_1:6320844-6320863 | None:intergenic | 35.0% | |
CAGGTATGATGAAATTGTGA+AGG | + | chr4_1:6320848-6320867 | Msa0532310:CDS | 35.0% | |
TCATCCTATATGAAGAAGGT+TGG | + | chr4_1:6320876-6320895 | Msa0532310:CDS | 35.0% | |
ATAGCCAACCTTCTTCATAT+AGG | - | chr4_1:6320883-6320902 | None:intergenic | 35.0% | |
TACAAATCTTGACTGGTACA+AGG | + | chr4_1:6320968-6320987 | Msa0532310:CDS | 35.0% | |
ACAAATCTTGACTGGTACAA+GGG | + | chr4_1:6320969-6320988 | Msa0532310:CDS | 35.0% | |
ATTAAATCCCACATTGTCAC+CGG | - | chr4_1:6321231-6321250 | None:intergenic | 35.0% | |
TTAGTTATCTTAACAGTGCC+AGG | - | chr4_1:6321656-6321675 | None:intergenic | 35.0% | |
! | ACTTGCTGCTTGTAAAATTC+AGG | - | chr4_1:6321928-6321947 | None:intergenic | 35.0% |
! | TTTTACAAGCAGCAAGTTTC+AGG | + | chr4_1:6321931-6321950 | Msa0532310:three_prime_UTR | 35.0% |
AAAAATGCTCCTGACATTCT+TGG | - | chr4_1:6322061-6322080 | None:intergenic | 35.0% | |
AGCGTTCATTCAAGTATGCT+TGG | + | chr4_1:6320406-6320425 | Msa0532310:CDS | 40.0% | |
GCGTTCATTCAAGTATGCTT+GGG | + | chr4_1:6320407-6320426 | Msa0532310:CDS | 40.0% | |
TCACAATTGACATTGCTCTG+TGG | + | chr4_1:6320466-6320485 | Msa0532310:CDS | 40.0% | |
TAATGAAATCTCTGTGTCCG+GGG | - | chr4_1:6320533-6320552 | None:intergenic | 40.0% | |
ATTCCATTTGTTCCCATCTC+TGG | + | chr4_1:6320915-6320934 | Msa0532310:CDS | 40.0% | |
AAACCAGAGATGGGAACAAA+TGG | - | chr4_1:6320921-6320940 | None:intergenic | 40.0% | |
ATCTTGTAGACATCCTGAAG+TGG | - | chr4_1:6321065-6321084 | None:intergenic | 40.0% | |
CTTCAGGATGTCTACAAGAT+TGG | + | chr4_1:6321065-6321084 | Msa0532310:CDS | 40.0% | |
GTCTACAAGATTGGAGGAAT+TGG | + | chr4_1:6321074-6321093 | Msa0532310:CDS | 40.0% | |
TTAAATCCCACATTGTCACC+GGG | - | chr4_1:6321230-6321249 | None:intergenic | 40.0% | |
TTATGTTGCCTCAAACACCA+AGG | + | chr4_1:6321286-6321305 | Msa0532310:CDS | 40.0% | |
GTGATTATCATGAATCACCC+TGG | + | chr4_1:6321347-6321366 | Msa0532310:CDS | 40.0% | |
AGCAAACTTGACAGCAATGT+GGG | - | chr4_1:6321417-6321436 | None:intergenic | 40.0% | |
AGCTCGTTACTAAGATTGAC+AGG | + | chr4_1:6321438-6321457 | Msa0532310:CDS | 40.0% | |
TCTCCATTCTTCAGGAACTT+GGG | - | chr4_1:6321491-6321510 | None:intergenic | 40.0% | |
ATCTCCATTCTTCAGGAACT+TGG | - | chr4_1:6321492-6321511 | None:intergenic | 40.0% | |
GAGAAAGTCTCAACAACCAT+GGG | - | chr4_1:6321545-6321564 | None:intergenic | 40.0% | |
AGAGAAAGTCTCAACAACCA+TGG | - | chr4_1:6321546-6321565 | None:intergenic | 40.0% | |
TTCTCTGAATATCCTCCACT+TGG | + | chr4_1:6321560-6321579 | Msa0532310:CDS | 40.0% | |
GCATATCTCTGACAGCAAAA+CGG | - | chr4_1:6321586-6321605 | None:intergenic | 40.0% | |
CCAAGAAAAATCATCCTGCA+CGG | - | chr4_1:6321702-6321721 | None:intergenic | 40.0% | |
! | CGTGCAGGATGATTTTTCTT+GGG | + | chr4_1:6321700-6321719 | Msa0532310:three_prime_UTR | 40.0% |
!! | CTGGAGTGTCTGAATGTTTT+AGG | + | chr4_1:6322024-6322043 | Msa0532310:three_prime_UTR | 40.0% |
ATTTCACTGCCAAGAATGTC+AGG | + | chr4_1:6322049-6322068 | Msa0532310:three_prime_UTR | 40.0% | |
AGCGTTCATTCAAGTATGCT+TGG | + | chr4_1:6320406-6320425 | Msa0532310:CDS | 40.0% | |
GCGTTCATTCAAGTATGCTT+GGG | + | chr4_1:6320407-6320426 | Msa0532310:CDS | 40.0% | |
TCACAATTGACATTGCTCTG+TGG | + | chr4_1:6320466-6320485 | Msa0532310:CDS | 40.0% | |
TAATGAAATCTCTGTGTCCG+GGG | - | chr4_1:6320533-6320552 | None:intergenic | 40.0% | |
ATTCCATTTGTTCCCATCTC+TGG | + | chr4_1:6320915-6320934 | Msa0532310:CDS | 40.0% | |
AAACCAGAGATGGGAACAAA+TGG | - | chr4_1:6320921-6320940 | None:intergenic | 40.0% | |
ATCTTGTAGACATCCTGAAG+TGG | - | chr4_1:6321065-6321084 | None:intergenic | 40.0% | |
CTTCAGGATGTCTACAAGAT+TGG | + | chr4_1:6321065-6321084 | Msa0532310:CDS | 40.0% | |
GTCTACAAGATTGGAGGAAT+TGG | + | chr4_1:6321074-6321093 | Msa0532310:CDS | 40.0% | |
TTAAATCCCACATTGTCACC+GGG | - | chr4_1:6321230-6321249 | None:intergenic | 40.0% | |
TTATGTTGCCTCAAACACCA+AGG | + | chr4_1:6321286-6321305 | Msa0532310:CDS | 40.0% | |
GTGATTATCATGAATCACCC+TGG | + | chr4_1:6321347-6321366 | Msa0532310:CDS | 40.0% | |
AGCAAACTTGACAGCAATGT+GGG | - | chr4_1:6321417-6321436 | None:intergenic | 40.0% | |
AGCTCGTTACTAAGATTGAC+AGG | + | chr4_1:6321438-6321457 | Msa0532310:CDS | 40.0% | |
TCTCCATTCTTCAGGAACTT+GGG | - | chr4_1:6321491-6321510 | None:intergenic | 40.0% | |
ATCTCCATTCTTCAGGAACT+TGG | - | chr4_1:6321492-6321511 | None:intergenic | 40.0% | |
GAGAAAGTCTCAACAACCAT+GGG | - | chr4_1:6321545-6321564 | None:intergenic | 40.0% | |
AGAGAAAGTCTCAACAACCA+TGG | - | chr4_1:6321546-6321565 | None:intergenic | 40.0% | |
TTCTCTGAATATCCTCCACT+TGG | + | chr4_1:6321560-6321579 | Msa0532310:CDS | 40.0% | |
GCATATCTCTGACAGCAAAA+CGG | - | chr4_1:6321586-6321605 | None:intergenic | 40.0% | |
CCAAGAAAAATCATCCTGCA+CGG | - | chr4_1:6321702-6321721 | None:intergenic | 40.0% | |
! | CGTGCAGGATGATTTTTCTT+GGG | + | chr4_1:6321700-6321719 | Msa0532310:three_prime_UTR | 40.0% |
!! | CTGGAGTGTCTGAATGTTTT+AGG | + | chr4_1:6322024-6322043 | Msa0532310:three_prime_UTR | 40.0% |
ATTTCACTGCCAAGAATGTC+AGG | + | chr4_1:6322049-6322068 | Msa0532310:three_prime_UTR | 40.0% | |
CTTGTAGATCAAGTGACCAG+TGG | - | chr4_1:6320325-6320344 | None:intergenic | 45.0% | |
GGTCACTTGATCTACAAGCT+TGG | + | chr4_1:6320327-6320346 | Msa0532310:CDS | 45.0% | |
CACTTGATCTACAAGCTTGG+AGG | + | chr4_1:6320330-6320349 | Msa0532310:CDS | 45.0% | |
TTGGGTTCTTGACAAGCTCA+AGG | + | chr4_1:6320425-6320444 | Msa0532310:CDS | 45.0% | |
AATGAAATCTCTGTGTCCGG+GGG | - | chr4_1:6320532-6320551 | None:intergenic | 45.0% | |
GAGAACAGCACAATCAGCTT+GGG | - | chr4_1:6320577-6320596 | None:intergenic | 45.0% | |
TGAGAACAGCACAATCAGCT+TGG | - | chr4_1:6320578-6320597 | None:intergenic | 45.0% | |
!! | CTCATCATTGATTCCACCAC+TGG | + | chr4_1:6320594-6320613 | Msa0532310:CDS | 45.0% |
!! | ATCATTGATTCCACCACTGG+TGG | + | chr4_1:6320597-6320616 | Msa0532310:CDS | 45.0% |
GAAGCTGGTATTTCCAAGGA+TGG | + | chr4_1:6320624-6320643 | Msa0532310:CDS | 45.0% | |
! | AAGCAAGGAGAGCATGTTCA+CGG | - | chr4_1:6320656-6320675 | None:intergenic | 45.0% |
TCACACCAAGAGTGAAAGCA+AGG | - | chr4_1:6320671-6320690 | None:intergenic | 45.0% | |
! | TTGCTTTCACTCTTGGTGTG+AGG | + | chr4_1:6320670-6320689 | Msa0532310:CDS | 45.0% |
AATGATCTGCTGCTGCAACA+AGG | + | chr4_1:6320695-6320714 | Msa0532310:CDS | 45.0% | |
! | TACCTGCTCTTGGAGTACTT+GGG | - | chr4_1:6320834-6320853 | None:intergenic | 45.0% |
! | ATACCTGCTCTTGGAGTACT+TGG | - | chr4_1:6320835-6320854 | None:intergenic | 45.0% |
!!! | TGTTCCCATCTCTGGTTTTG+AGG | + | chr4_1:6320923-6320942 | Msa0532310:CDS | 45.0% |
!!! | GTTCCCATCTCTGGTTTTGA+GGG | + | chr4_1:6320924-6320943 | Msa0532310:CDS | 45.0% |
TCTCCCTCAAAACCAGAGAT+GGG | - | chr4_1:6320930-6320949 | None:intergenic | 45.0% | |
ATCTCCCTCAAAACCAGAGA+TGG | - | chr4_1:6320931-6320950 | None:intergenic | 45.0% | |
AGCGCTCTACAAATCTTGAC+TGG | + | chr4_1:6320961-6320980 | Msa0532310:CDS | 45.0% | |
!! | CAAGAGCCTCAAGAAGTGTT+GGG | - | chr4_1:6320995-6321014 | None:intergenic | 45.0% |
! | TCAAGAGCCTCAAGAAGTGT+TGG | - | chr4_1:6320996-6321015 | None:intergenic | 45.0% |
AGACATCCTGAAGTGGTAGT+CGG | - | chr4_1:6321058-6321077 | None:intergenic | 45.0% | |
CAGGATGTCTACAAGATTGG+AGG | + | chr4_1:6321068-6321087 | Msa0532310:CDS | 45.0% | |
GGAATTGGAACTGTTCCTGT+CGG | + | chr4_1:6321089-6321108 | Msa0532310:CDS | 45.0% | |
TGGTACCATGAAACCTGGAA+TGG | + | chr4_1:6321124-6321143 | Msa0532310:CDS | 45.0% | |
TACCATGAAACCTGGAATGG+TGG | + | chr4_1:6321127-6321146 | Msa0532310:CDS | 45.0% | |
ACTTCAGTTTGCAGTCCAGT+TGG | - | chr4_1:6321164-6321183 | None:intergenic | 45.0% | |
GCAAACTGAAGTCAAGTCTG+TGG | + | chr4_1:6321172-6321191 | Msa0532310:CDS | 45.0% | |
GCATCATGAATCTCTCACTG+AGG | + | chr4_1:6321199-6321218 | Msa0532310:CDS | 45.0% | |
AAACTTGACAGCAATGTGGG+AGG | - | chr4_1:6321414-6321433 | None:intergenic | 45.0% | |
CAGCAAACTTGACAGCAATG+TGG | - | chr4_1:6321418-6321437 | None:intergenic | 45.0% | |
ACTAAGATTGACAGGCGTTC+TGG | + | chr4_1:6321446-6321465 | Msa0532310:CDS | 45.0% | |
TTCTGGTAAGGAGATCGAGA+AGG | + | chr4_1:6321463-6321482 | Msa0532310:CDS | 45.0% | |
TTCCTGAAGAATGGAGATGC+TGG | + | chr4_1:6321494-6321513 | Msa0532310:CDS | 45.0% | |
TACCAGCATCTCCATTCTTC+AGG | - | chr4_1:6321499-6321518 | None:intergenic | 45.0% | |
CAGAGATATGCGTCAAACTG+TGG | + | chr4_1:6321595-6321614 | Msa0532310:CDS | 45.0% | |
! | TATCAAGGGTGTGGAGAAGA+AGG | + | chr4_1:6321628-6321647 | Msa0532310:CDS | 45.0% |
CTGCACGGTTCATTTCTTCT+TGG | - | chr4_1:6321687-6321706 | None:intergenic | 45.0% | |
CAAGAAGAAATGAACCGTGC+AGG | + | chr4_1:6321685-6321704 | Msa0532310:exon | 45.0% | |
! | CCGTGCAGGATGATTTTTCT+TGG | + | chr4_1:6321699-6321718 | Msa0532310:three_prime_UTR | 45.0% |
GAACAAAAGCTGGGAGATGA+CGG | - | chr4_1:6321824-6321843 | None:intergenic | 45.0% | |
!! | CAGTTCTGGGAACAAAAGCT+GGG | - | chr4_1:6321833-6321852 | None:intergenic | 45.0% |
! | CAGCTTTTGTTCCCAGAACT+GGG | + | chr4_1:6321832-6321851 | Msa0532310:three_prime_UTR | 45.0% |
! | TCGATCTAGAACCCAGTTCT+GGG | - | chr4_1:6321846-6321865 | None:intergenic | 45.0% |
!! | AGAACTGGGTTCTAGATCGA+CGG | + | chr4_1:6321846-6321865 | Msa0532310:three_prime_UTR | 45.0% |
CTTGTAGATCAAGTGACCAG+TGG | - | chr4_1:6320325-6320344 | None:intergenic | 45.0% | |
GGTCACTTGATCTACAAGCT+TGG | + | chr4_1:6320327-6320346 | Msa0532310:CDS | 45.0% | |
CACTTGATCTACAAGCTTGG+AGG | + | chr4_1:6320330-6320349 | Msa0532310:CDS | 45.0% | |
TTGGGTTCTTGACAAGCTCA+AGG | + | chr4_1:6320425-6320444 | Msa0532310:CDS | 45.0% | |
AATGAAATCTCTGTGTCCGG+GGG | - | chr4_1:6320532-6320551 | None:intergenic | 45.0% | |
GAGAACAGCACAATCAGCTT+GGG | - | chr4_1:6320577-6320596 | None:intergenic | 45.0% | |
TGAGAACAGCACAATCAGCT+TGG | - | chr4_1:6320578-6320597 | None:intergenic | 45.0% | |
!! | CTCATCATTGATTCCACCAC+TGG | + | chr4_1:6320594-6320613 | Msa0532310:CDS | 45.0% |
!! | ATCATTGATTCCACCACTGG+TGG | + | chr4_1:6320597-6320616 | Msa0532310:CDS | 45.0% |
GAAGCTGGTATTTCCAAGGA+TGG | + | chr4_1:6320624-6320643 | Msa0532310:CDS | 45.0% | |
! | AAGCAAGGAGAGCATGTTCA+CGG | - | chr4_1:6320656-6320675 | None:intergenic | 45.0% |
TCACACCAAGAGTGAAAGCA+AGG | - | chr4_1:6320671-6320690 | None:intergenic | 45.0% | |
! | TTGCTTTCACTCTTGGTGTG+AGG | + | chr4_1:6320670-6320689 | Msa0532310:CDS | 45.0% |
AATGATCTGCTGCTGCAACA+AGG | + | chr4_1:6320695-6320714 | Msa0532310:CDS | 45.0% | |
! | TACCTGCTCTTGGAGTACTT+GGG | - | chr4_1:6320834-6320853 | None:intergenic | 45.0% |
! | ATACCTGCTCTTGGAGTACT+TGG | - | chr4_1:6320835-6320854 | None:intergenic | 45.0% |
!!! | TGTTCCCATCTCTGGTTTTG+AGG | + | chr4_1:6320923-6320942 | Msa0532310:CDS | 45.0% |
!!! | GTTCCCATCTCTGGTTTTGA+GGG | + | chr4_1:6320924-6320943 | Msa0532310:CDS | 45.0% |
TCTCCCTCAAAACCAGAGAT+GGG | - | chr4_1:6320930-6320949 | None:intergenic | 45.0% | |
ATCTCCCTCAAAACCAGAGA+TGG | - | chr4_1:6320931-6320950 | None:intergenic | 45.0% | |
AGCGCTCTACAAATCTTGAC+TGG | + | chr4_1:6320961-6320980 | Msa0532310:CDS | 45.0% | |
!! | CAAGAGCCTCAAGAAGTGTT+GGG | - | chr4_1:6320995-6321014 | None:intergenic | 45.0% |
! | TCAAGAGCCTCAAGAAGTGT+TGG | - | chr4_1:6320996-6321015 | None:intergenic | 45.0% |
AGACATCCTGAAGTGGTAGT+CGG | - | chr4_1:6321058-6321077 | None:intergenic | 45.0% | |
CAGGATGTCTACAAGATTGG+AGG | + | chr4_1:6321068-6321087 | Msa0532310:CDS | 45.0% | |
GGAATTGGAACTGTTCCTGT+CGG | + | chr4_1:6321089-6321108 | Msa0532310:CDS | 45.0% | |
TGGTACCATGAAACCTGGAA+TGG | + | chr4_1:6321124-6321143 | Msa0532310:CDS | 45.0% | |
TACCATGAAACCTGGAATGG+TGG | + | chr4_1:6321127-6321146 | Msa0532310:CDS | 45.0% | |
ACTTCAGTTTGCAGTCCAGT+TGG | - | chr4_1:6321164-6321183 | None:intergenic | 45.0% | |
GCAAACTGAAGTCAAGTCTG+TGG | + | chr4_1:6321172-6321191 | Msa0532310:CDS | 45.0% | |
GCATCATGAATCTCTCACTG+AGG | + | chr4_1:6321199-6321218 | Msa0532310:CDS | 45.0% | |
AAACTTGACAGCAATGTGGG+AGG | - | chr4_1:6321414-6321433 | None:intergenic | 45.0% | |
CAGCAAACTTGACAGCAATG+TGG | - | chr4_1:6321418-6321437 | None:intergenic | 45.0% | |
ACTAAGATTGACAGGCGTTC+TGG | + | chr4_1:6321446-6321465 | Msa0532310:CDS | 45.0% | |
TTCTGGTAAGGAGATCGAGA+AGG | + | chr4_1:6321463-6321482 | Msa0532310:CDS | 45.0% | |
TTCCTGAAGAATGGAGATGC+TGG | + | chr4_1:6321494-6321513 | Msa0532310:CDS | 45.0% | |
TACCAGCATCTCCATTCTTC+AGG | - | chr4_1:6321499-6321518 | None:intergenic | 45.0% | |
CAGAGATATGCGTCAAACTG+TGG | + | chr4_1:6321595-6321614 | Msa0532310:CDS | 45.0% | |
! | TATCAAGGGTGTGGAGAAGA+AGG | + | chr4_1:6321628-6321647 | Msa0532310:CDS | 45.0% |
CTGCACGGTTCATTTCTTCT+TGG | - | chr4_1:6321687-6321706 | None:intergenic | 45.0% | |
CAAGAAGAAATGAACCGTGC+AGG | + | chr4_1:6321685-6321704 | Msa0532310:exon | 45.0% | |
! | CCGTGCAGGATGATTTTTCT+TGG | + | chr4_1:6321699-6321718 | Msa0532310:three_prime_UTR | 45.0% |
GAACAAAAGCTGGGAGATGA+CGG | - | chr4_1:6321824-6321843 | None:intergenic | 45.0% | |
!! | CAGTTCTGGGAACAAAAGCT+GGG | - | chr4_1:6321833-6321852 | None:intergenic | 45.0% |
! | CAGCTTTTGTTCCCAGAACT+GGG | + | chr4_1:6321832-6321851 | Msa0532310:three_prime_UTR | 45.0% |
! | TCGATCTAGAACCCAGTTCT+GGG | - | chr4_1:6321846-6321865 | None:intergenic | 45.0% |
!! | AGAACTGGGTTCTAGATCGA+CGG | + | chr4_1:6321846-6321865 | Msa0532310:three_prime_UTR | 45.0% |
!! | TCATTGGCCATGTCGACTCT+GGG | + | chr4_1:6320289-6320308 | Msa0532310:CDS | 50.0% |
TTGACTTCCCAGAGTCGACA+TGG | - | chr4_1:6320299-6320318 | None:intergenic | 50.0% | |
TCTGGGAAGTCAACTACCAC+TGG | + | chr4_1:6320306-6320325 | Msa0532310:CDS | 50.0% | |
TTGACAAGCGTGTGATCGAG+AGG | + | chr4_1:6320355-6320374 | Msa0532310:CDS | 50.0% | |
AGCTTCAAAACCACCAGTGG+TGG | - | chr4_1:6320610-6320629 | None:intergenic | 50.0% | |
!!! | ACCACTGGTGGTTTTGAAGC+TGG | + | chr4_1:6320609-6320628 | Msa0532310:CDS | 50.0% |
ACCAGCTTCAAAACCACCAG+TGG | - | chr4_1:6320613-6320632 | None:intergenic | 50.0% | |
! | AGCAAGGAGAGCATGTTCAC+GGG | - | chr4_1:6320655-6320674 | None:intergenic | 50.0% |
GCTCTCCTTGCTTTCACTCT+TGG | + | chr4_1:6320663-6320682 | Msa0532310:CDS | 50.0% | |
! | CTTGGAGTACTTGGGTGTAG+TGG | - | chr4_1:6320826-6320845 | None:intergenic | 50.0% |
ATCCTGAAGTGGTAGTCGGA+GGG | - | chr4_1:6321054-6321073 | None:intergenic | 50.0% | |
GAGACTGGTACCATGAAACC+TGG | + | chr4_1:6321119-6321138 | Msa0532310:CDS | 50.0% | |
CACCACCATTCCAGGTTTCA+TGG | - | chr4_1:6321132-6321151 | None:intergenic | 50.0% | |
GCAAAAGTCACCACCATTCC+AGG | - | chr4_1:6321140-6321159 | None:intergenic | 50.0% | |
! | GTGGTGACTTTTGCTCCAAC+TGG | + | chr4_1:6321146-6321165 | Msa0532310:CDS | 50.0% |
TCTGTCAAGGATCTCAAGCG+TGG | + | chr4_1:6321263-6321282 | Msa0532310:CDS | 50.0% | |
!! | AGGGTCATCCTTGGTGTTTG+AGG | - | chr4_1:6321297-6321316 | None:intergenic | 50.0% |
TGTGAAGTTAGCAGCCTCCT+TGG | - | chr4_1:6321321-6321340 | None:intergenic | 50.0% | |
ATGAATCACCCTGGCCAGAT+TGG | + | chr4_1:6321356-6321375 | Msa0532310:CDS | 50.0% | |
AGCCATTTCCAATCTGGCCA+GGG | - | chr4_1:6321367-6321386 | None:intergenic | 50.0% | |
TAGCCATTTCCAATCTGGCC+AGG | - | chr4_1:6321368-6321387 | None:intergenic | 50.0% | |
GGGCATAGCCATTTCCAATC+TGG | - | chr4_1:6321373-6321392 | None:intergenic | 50.0% | |
GATTGACAGGCGTTCTGGTA+AGG | + | chr4_1:6321451-6321470 | Msa0532310:CDS | 50.0% | |
GAGCCCAAGTTCCTGAAGAA+TGG | + | chr4_1:6321485-6321504 | Msa0532310:CDS | 50.0% | |
! | TCAACAACCATGGGCTTGGT+GGG | - | chr4_1:6321536-6321555 | None:intergenic | 50.0% |
AGTCTCAACAACCATGGGCT+TGG | - | chr4_1:6321540-6321559 | None:intergenic | 50.0% | |
ATGCGTCAAACTGTGGCTGT+TGG | + | chr4_1:6321602-6321621 | Msa0532310:CDS | 50.0% | |
TGCGTCAAACTGTGGCTGTT+GGG | + | chr4_1:6321603-6321622 | Msa0532310:CDS | 50.0% | |
TGTGGCTGTTGGGGTTATCA+AGG | + | chr4_1:6321613-6321632 | Msa0532310:CDS | 50.0% | |
GTGGCTGTTGGGGTTATCAA+GGG | + | chr4_1:6321614-6321633 | Msa0532310:CDS | 50.0% | |
TGTTGGGGTTATCAAGGGTG+TGG | + | chr4_1:6321619-6321638 | Msa0532310:CDS | 50.0% | |
!! | CCAGTTCTGGGAACAAAAGC+TGG | - | chr4_1:6321834-6321853 | None:intergenic | 50.0% |
! | CCAGCTTTTGTTCCCAGAAC+TGG | + | chr4_1:6321831-6321850 | Msa0532310:three_prime_UTR | 50.0% |
! | GTCGATCTAGAACCCAGTTC+TGG | - | chr4_1:6321847-6321866 | None:intergenic | 50.0% |
!! | TCATTGGCCATGTCGACTCT+GGG | + | chr4_1:6320289-6320308 | Msa0532310:CDS | 50.0% |
TTGACTTCCCAGAGTCGACA+TGG | - | chr4_1:6320299-6320318 | None:intergenic | 50.0% | |
TCTGGGAAGTCAACTACCAC+TGG | + | chr4_1:6320306-6320325 | Msa0532310:CDS | 50.0% | |
TTGACAAGCGTGTGATCGAG+AGG | + | chr4_1:6320355-6320374 | Msa0532310:CDS | 50.0% | |
AGCTTCAAAACCACCAGTGG+TGG | - | chr4_1:6320610-6320629 | None:intergenic | 50.0% | |
!!! | ACCACTGGTGGTTTTGAAGC+TGG | + | chr4_1:6320609-6320628 | Msa0532310:CDS | 50.0% |
ACCAGCTTCAAAACCACCAG+TGG | - | chr4_1:6320613-6320632 | None:intergenic | 50.0% | |
! | AGCAAGGAGAGCATGTTCAC+GGG | - | chr4_1:6320655-6320674 | None:intergenic | 50.0% |
GCTCTCCTTGCTTTCACTCT+TGG | + | chr4_1:6320663-6320682 | Msa0532310:CDS | 50.0% | |
! | CTTGGAGTACTTGGGTGTAG+TGG | - | chr4_1:6320826-6320845 | None:intergenic | 50.0% |
ATCCTGAAGTGGTAGTCGGA+GGG | - | chr4_1:6321054-6321073 | None:intergenic | 50.0% | |
GAGACTGGTACCATGAAACC+TGG | + | chr4_1:6321119-6321138 | Msa0532310:CDS | 50.0% | |
CACCACCATTCCAGGTTTCA+TGG | - | chr4_1:6321132-6321151 | None:intergenic | 50.0% | |
GCAAAAGTCACCACCATTCC+AGG | - | chr4_1:6321140-6321159 | None:intergenic | 50.0% | |
! | GTGGTGACTTTTGCTCCAAC+TGG | + | chr4_1:6321146-6321165 | Msa0532310:CDS | 50.0% |
TCTGTCAAGGATCTCAAGCG+TGG | + | chr4_1:6321263-6321282 | Msa0532310:CDS | 50.0% | |
!! | AGGGTCATCCTTGGTGTTTG+AGG | - | chr4_1:6321297-6321316 | None:intergenic | 50.0% |
TGTGAAGTTAGCAGCCTCCT+TGG | - | chr4_1:6321321-6321340 | None:intergenic | 50.0% | |
ATGAATCACCCTGGCCAGAT+TGG | + | chr4_1:6321356-6321375 | Msa0532310:CDS | 50.0% | |
AGCCATTTCCAATCTGGCCA+GGG | - | chr4_1:6321367-6321386 | None:intergenic | 50.0% | |
TAGCCATTTCCAATCTGGCC+AGG | - | chr4_1:6321368-6321387 | None:intergenic | 50.0% | |
GGGCATAGCCATTTCCAATC+TGG | - | chr4_1:6321373-6321392 | None:intergenic | 50.0% | |
GATTGACAGGCGTTCTGGTA+AGG | + | chr4_1:6321451-6321470 | Msa0532310:CDS | 50.0% | |
GAGCCCAAGTTCCTGAAGAA+TGG | + | chr4_1:6321485-6321504 | Msa0532310:CDS | 50.0% | |
! | TCAACAACCATGGGCTTGGT+GGG | - | chr4_1:6321536-6321555 | None:intergenic | 50.0% |
AGTCTCAACAACCATGGGCT+TGG | - | chr4_1:6321540-6321559 | None:intergenic | 50.0% | |
ATGCGTCAAACTGTGGCTGT+TGG | + | chr4_1:6321602-6321621 | Msa0532310:CDS | 50.0% | |
TGCGTCAAACTGTGGCTGTT+GGG | + | chr4_1:6321603-6321622 | Msa0532310:CDS | 50.0% | |
TGTGGCTGTTGGGGTTATCA+AGG | + | chr4_1:6321613-6321632 | Msa0532310:CDS | 50.0% | |
GTGGCTGTTGGGGTTATCAA+GGG | + | chr4_1:6321614-6321633 | Msa0532310:CDS | 50.0% | |
TGTTGGGGTTATCAAGGGTG+TGG | + | chr4_1:6321619-6321638 | Msa0532310:CDS | 50.0% | |
!! | CCAGTTCTGGGAACAAAAGC+TGG | - | chr4_1:6321834-6321853 | None:intergenic | 50.0% |
! | CCAGCTTTTGTTCCCAGAAC+TGG | + | chr4_1:6321831-6321850 | Msa0532310:three_prime_UTR | 50.0% |
! | GTCGATCTAGAACCCAGTTC+TGG | - | chr4_1:6321847-6321866 | None:intergenic | 50.0% |
!! | GTCATTGGCCATGTCGACTC+TGG | + | chr4_1:6320288-6320307 | Msa0532310:CDS | 55.0% |
CTCAAGGCTGAGCGTGAAAG+AGG | + | chr4_1:6320441-6320460 | Msa0532310:CDS | 55.0% | |
TGCACTGTCATTGATGCCCC+CGG | + | chr4_1:6320513-6320532 | Msa0532310:CDS | 55.0% | |
TTCACGGGTCTGACCATCCT+TGG | - | chr4_1:6320640-6320659 | None:intergenic | 55.0% | |
CACCCAAGTACTCCAAGAGC+AGG | + | chr4_1:6320829-6320848 | Msa0532310:CDS | 55.0% | |
CAAGGGCCCAACACTTCTTG+AGG | + | chr4_1:6320986-6321005 | Msa0532310:CDS | 55.0% | |
GGCTTGTCTGATGGCCTCTT+AGG | - | chr4_1:6321032-6321051 | None:intergenic | 55.0% | |
TCCTGAAGTGGTAGTCGGAG+GGG | - | chr4_1:6321053-6321072 | None:intergenic | 55.0% | |
CATCCTGAAGTGGTAGTCGG+AGG | - | chr4_1:6321055-6321074 | None:intergenic | 55.0% | |
! | TCTCTCACTGAGGCACTTCC+CGG | + | chr4_1:6321209-6321228 | Msa0532310:CDS | 55.0% |
GCACTTCCCGGTGACAATGT+GGG | + | chr4_1:6321221-6321240 | Msa0532310:CDS | 55.0% | |
AGTTAGCAGCCTCCTTGGCA+GGG | - | chr4_1:6321316-6321335 | None:intergenic | 55.0% | |
AAGTTAGCAGCCTCCTTGGC+AGG | - | chr4_1:6321317-6321336 | None:intergenic | 55.0% | |
CACCCTGGCCAGATTGGAAA+TGG | + | chr4_1:6321362-6321381 | Msa0532310:CDS | 55.0% | |
AGGTGTGGCAGTCAAGCACA+GGG | - | chr4_1:6321394-6321413 | None:intergenic | 55.0% | |
TGACAGCAATGTGGGAGGTG+TGG | - | chr4_1:6321409-6321428 | None:intergenic | 55.0% | |
GATGATTCCCACCAAGCCCA+TGG | + | chr4_1:6321526-6321545 | Msa0532310:CDS | 55.0% | |
CTCAACAACCATGGGCTTGG+TGG | - | chr4_1:6321537-6321556 | None:intergenic | 55.0% | |
ACAGCAAAACGGCCAAGTGG+AGG | - | chr4_1:6321575-6321594 | None:intergenic | 55.0% | |
CTGACAGCAAAACGGCCAAG+TGG | - | chr4_1:6321578-6321597 | None:intergenic | 55.0% | |
GCGTCAAACTGTGGCTGTTG+GGG | + | chr4_1:6321604-6321623 | Msa0532310:CDS | 55.0% | |
GGTGTGGAGAAGAAGGAACC+TGG | + | chr4_1:6321635-6321654 | Msa0532310:CDS | 55.0% | |
!! | ACTGGGTTCTAGATCGACGG+TGG | + | chr4_1:6321849-6321868 | Msa0532310:three_prime_UTR | 55.0% |
!! | GTCATTGGCCATGTCGACTC+TGG | + | chr4_1:6320288-6320307 | Msa0532310:CDS | 55.0% |
CTCAAGGCTGAGCGTGAAAG+AGG | + | chr4_1:6320441-6320460 | Msa0532310:CDS | 55.0% | |
TGCACTGTCATTGATGCCCC+CGG | + | chr4_1:6320513-6320532 | Msa0532310:CDS | 55.0% | |
TTCACGGGTCTGACCATCCT+TGG | - | chr4_1:6320640-6320659 | None:intergenic | 55.0% | |
CACCCAAGTACTCCAAGAGC+AGG | + | chr4_1:6320829-6320848 | Msa0532310:CDS | 55.0% | |
CAAGGGCCCAACACTTCTTG+AGG | + | chr4_1:6320986-6321005 | Msa0532310:CDS | 55.0% | |
GGCTTGTCTGATGGCCTCTT+AGG | - | chr4_1:6321032-6321051 | None:intergenic | 55.0% | |
TCCTGAAGTGGTAGTCGGAG+GGG | - | chr4_1:6321053-6321072 | None:intergenic | 55.0% | |
CATCCTGAAGTGGTAGTCGG+AGG | - | chr4_1:6321055-6321074 | None:intergenic | 55.0% | |
! | TCTCTCACTGAGGCACTTCC+CGG | + | chr4_1:6321209-6321228 | Msa0532310:CDS | 55.0% |
GCACTTCCCGGTGACAATGT+GGG | + | chr4_1:6321221-6321240 | Msa0532310:CDS | 55.0% | |
AGTTAGCAGCCTCCTTGGCA+GGG | - | chr4_1:6321316-6321335 | None:intergenic | 55.0% | |
AAGTTAGCAGCCTCCTTGGC+AGG | - | chr4_1:6321317-6321336 | None:intergenic | 55.0% | |
CACCCTGGCCAGATTGGAAA+TGG | + | chr4_1:6321362-6321381 | Msa0532310:CDS | 55.0% | |
AGGTGTGGCAGTCAAGCACA+GGG | - | chr4_1:6321394-6321413 | None:intergenic | 55.0% | |
TGACAGCAATGTGGGAGGTG+TGG | - | chr4_1:6321409-6321428 | None:intergenic | 55.0% | |
GATGATTCCCACCAAGCCCA+TGG | + | chr4_1:6321526-6321545 | Msa0532310:CDS | 55.0% | |
CTCAACAACCATGGGCTTGG+TGG | - | chr4_1:6321537-6321556 | None:intergenic | 55.0% | |
ACAGCAAAACGGCCAAGTGG+AGG | - | chr4_1:6321575-6321594 | None:intergenic | 55.0% | |
CTGACAGCAAAACGGCCAAG+TGG | - | chr4_1:6321578-6321597 | None:intergenic | 55.0% | |
GCGTCAAACTGTGGCTGTTG+GGG | + | chr4_1:6321604-6321623 | Msa0532310:CDS | 55.0% | |
GGTGTGGAGAAGAAGGAACC+TGG | + | chr4_1:6321635-6321654 | Msa0532310:CDS | 55.0% | |
!! | ACTGGGTTCTAGATCGACGG+TGG | + | chr4_1:6321849-6321868 | Msa0532310:three_prime_UTR | 55.0% |
AGTCGGAGGGGCTTGTCTGA+TGG | - | chr4_1:6321041-6321060 | None:intergenic | 60.0% | |
CCAGTCTCAACACGTCCGAC+AGG | - | chr4_1:6321107-6321126 | None:intergenic | 60.0% | |
CCTGTCGGACGTGTTGAGAC+TGG | + | chr4_1:6321104-6321123 | Msa0532310:CDS | 60.0% | |
GGCACTTCCCGGTGACAATG+TGG | + | chr4_1:6321220-6321239 | Msa0532310:CDS | 60.0% | |
CACCAAGGATGACCCTGCCA+AGG | + | chr4_1:6321301-6321320 | Msa0532310:CDS | 60.0% | |
CTCCTTGGCAGGGTCATCCT+TGG | - | chr4_1:6321306-6321325 | None:intergenic | 60.0% | |
CAAGGATGACCCTGCCAAGG+AGG | + | chr4_1:6321304-6321323 | Msa0532310:CDS | 60.0% | |
GGTGTGGCAGTCAAGCACAG+GGG | - | chr4_1:6321393-6321412 | None:intergenic | 60.0% | |
GAGGTGTGGCAGTCAAGCAC+AGG | - | chr4_1:6321395-6321414 | None:intergenic | 60.0% | |
AGTCGGAGGGGCTTGTCTGA+TGG | - | chr4_1:6321041-6321060 | None:intergenic | 60.0% | |
CCAGTCTCAACACGTCCGAC+AGG | - | chr4_1:6321107-6321126 | None:intergenic | 60.0% | |
CCTGTCGGACGTGTTGAGAC+TGG | + | chr4_1:6321104-6321123 | Msa0532310:CDS | 60.0% | |
GGCACTTCCCGGTGACAATG+TGG | + | chr4_1:6321220-6321239 | Msa0532310:CDS | 60.0% | |
CACCAAGGATGACCCTGCCA+AGG | + | chr4_1:6321301-6321320 | Msa0532310:CDS | 60.0% | |
CTCCTTGGCAGGGTCATCCT+TGG | - | chr4_1:6321306-6321325 | None:intergenic | 60.0% | |
CAAGGATGACCCTGCCAAGG+AGG | + | chr4_1:6321304-6321323 | Msa0532310:CDS | 60.0% | |
GGTGTGGCAGTCAAGCACAG+GGG | - | chr4_1:6321393-6321412 | None:intergenic | 60.0% | |
GAGGTGTGGCAGTCAAGCAC+AGG | - | chr4_1:6321395-6321414 | None:intergenic | 60.0% | |
GCCCCTCCGACTACCACTTC+AGG | + | chr4_1:6321049-6321068 | Msa0532310:CDS | 65.0% | |
GCCCCTCCGACTACCACTTC+AGG | + | chr4_1:6321049-6321068 | Msa0532310:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 6320153 | 6322100 | 6320153 | ID=Msa0532310;Name=Msa0532310 |
chr4_1 | mRNA | 6320153 | 6322100 | 6320153 | ID=Msa0532310-mRNA-1;Parent=Msa0532310;Name=Msa0532310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=102|1|1|1|0.5|0.33|3|327|447 |
chr4_1 | exon | 6320153 | 6320716 | 6320153 | ID=Msa0532310-mRNA-1:exon:2247;Parent=Msa0532310-mRNA-1 |
chr4_1 | exon | 6320816 | 6321731 | 6320816 | ID=Msa0532310-mRNA-1:exon:2248;Parent=Msa0532310-mRNA-1 |
chr4_1 | exon | 6321808 | 6322100 | 6321808 | ID=Msa0532310-mRNA-1:exon:2249;Parent=Msa0532310-mRNA-1 |
chr4_1 | five_prime_UTR | 6320153 | 6320254 | 6320153 | ID=Msa0532310-mRNA-1:five_prime_utr;Parent=Msa0532310-mRNA-1 |
chr4_1 | CDS | 6320255 | 6320716 | 6320255 | ID=Msa0532310-mRNA-1:cds;Parent=Msa0532310-mRNA-1 |
chr4_1 | CDS | 6320816 | 6321697 | 6320816 | ID=Msa0532310-mRNA-1:cds;Parent=Msa0532310-mRNA-1 |
chr4_1 | three_prime_UTR | 6321698 | 6321731 | 6321698 | ID=Msa0532310-mRNA-1:three_prime_utr;Parent=Msa0532310-mRNA-1 |
chr4_1 | three_prime_UTR | 6321808 | 6322100 | 6321808 | ID=Msa0532310-mRNA-1:three_prime_utr;Parent=Msa0532310-mRNA-1 |
Gene Sequence |
Protein sequence |