Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435250 | XP_013462190.2 | 99.405 | 168 | 1 | 0 | 1 | 168 | 215 | 382 | 2.03e-111 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435250 | sp|A8MRV9|SLAH4_ARATH | 68.590 | 156 | 49 | 0 | 1 | 156 | 195 | 350 | 4.76e-73 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435250 | A0A396J2Z0 | 99.405 | 168 | 1 | 0 | 1 | 168 | 215 | 382 | 9.70e-112 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074860 | Msa0435250 | -0.812323 | 4.492469e-51 | -8.615850e-47 |
| Msa0167160 | Msa0435250 | -0.803282 | 3.755378e-49 | -8.615850e-47 |
| Msa0216150 | Msa0435250 | -0.806264 | 8.949958e-50 | -8.615850e-47 |
| Msa0225280 | Msa0435250 | -0.803288 | 3.744003e-49 | -8.615850e-47 |
| Msa0403740 | Msa0435250 | -0.801714 | 7.903889e-49 | -8.615850e-47 |
| Msa0412580 | Msa0435250 | -0.800758 | 1.240120e-48 | -8.615850e-47 |
| Msa0427230 | Msa0435250 | -0.811470 | 6.891416e-51 | -8.615850e-47 |
| Msa0435250 | Msa0436250 | 0.928878 | 1.547756e-92 | -8.615850e-47 |
| Msa0435250 | Msa0456450 | -0.803421 | 3.514026e-49 | -8.615850e-47 |
| Msa0435250 | Msa0457070 | -0.805288 | 1.435184e-49 | -8.615850e-47 |
| Msa0435250 | Msa0457600 | -0.802759 | 4.816500e-49 | -8.615850e-47 |
| Msa0435250 | Msa0460510 | -0.804795 | 1.820064e-49 | -8.615850e-47 |
| Msa0435250 | Msa0473740 | -0.810887 | 9.216343e-51 | -8.615850e-47 |
| Msa0435250 | Msa0479360 | 0.954423 | 3.062527e-112 | -8.615850e-47 |
| Msa0435250 | Msa0497140 | -0.805698 | 1.177386e-49 | -8.615850e-47 |
| Msa0435250 | Msa0560280 | 0.802327 | 5.914433e-49 | -8.615850e-47 |
| Msa0435250 | Msa0572730 | -0.809452 | 1.879219e-50 | -8.615850e-47 |
| Msa0435250 | Msa0580410 | -0.803486 | 3.406792e-49 | -8.615850e-47 |
| Msa0435250 | Msa0580890 | -0.809663 | 1.693328e-50 | -8.615850e-47 |
| Msa0435250 | Msa0667670 | -0.800531 | 1.379880e-48 | -8.615850e-47 |
| Msa0435250 | Msa0676570 | -0.803556 | 3.295790e-49 | -8.615850e-47 |
| Msa0435250 | Msa0697510 | 0.800920 | 1.149389e-48 | -8.615850e-47 |
| Msa0435250 | Msa0717540 | -0.806355 | 8.563442e-50 | -8.615850e-47 |
| Msa0435250 | Msa0754020 | -0.801405 | 9.145867e-49 | -8.615850e-47 |
| Msa0435250 | Msa0758880 | -0.808488 | 3.022005e-50 | -8.615850e-47 |
| Msa0435250 | Msa0772160 | -0.800393 | 1.472217e-48 | -8.615850e-47 |
| Msa0435250 | Msa0795910 | -0.802462 | 5.546175e-49 | -8.615850e-47 |
| Msa0435250 | Msa0801920 | -0.802615 | 5.157699e-49 | -8.615850e-47 |
| Msa0435250 | Msa0833030 | -0.802512 | 5.415921e-49 | -8.615850e-47 |
| Msa0435250 | Msa0833360 | -0.801218 | 9.988860e-49 | -8.615850e-47 |
| Msa0435250 | Msa0838120 | -0.803725 | 3.038865e-49 | -8.615850e-47 |
| Msa0435250 | Msa0947550 | -0.800171 | 1.633684e-48 | -8.615850e-47 |
| Msa0435250 | Msa0984230 | -0.810651 | 1.036959e-50 | -8.615850e-47 |
| Msa0435250 | Msa1057940 | -0.809558 | 1.783243e-50 | -8.615850e-47 |
| Msa0435250 | Msa1117770 | -0.802504 | 5.437703e-49 | -8.615850e-47 |
| Msa0435250 | Msa1121720 | -0.822628 | 2.139889e-53 | -8.615850e-47 |
| Msa0435250 | Msa1132880 | -0.802121 | 6.518707e-49 | -8.615850e-47 |
| Msa0435250 | Msa1174280 | 0.800484 | 1.410752e-48 | -8.615850e-47 |
| Msa0435250 | Msa1184100 | -0.807288 | 5.438845e-50 | -8.615850e-47 |
| Msa0435250 | Msa1199540 | -0.807432 | 5.070132e-50 | -8.615850e-47 |
| Msa0435250 | Msa1212150 | -0.800458 | 1.428078e-48 | -8.615850e-47 |
| Msa0435250 | Msa1228260 | -0.805061 | 1.601043e-49 | -8.615850e-47 |
| Msa0435250 | Msa1271220 | -0.803795 | 2.939759e-49 | -8.615850e-47 |
| Msa0435250 | Msa1277270 | -0.801894 | 7.260620e-49 | -8.615850e-47 |
| Msa0435250 | Msa1279200 | -0.804093 | 2.548988e-49 | -8.615850e-47 |
| Msa0435250 | Msa1290090 | -0.803619 | 3.198114e-49 | -8.615850e-47 |
| Msa0435250 | Msa1308430 | -0.803215 | 3.877603e-49 | -8.615850e-47 |
| Msa0435250 | Msa1315880 | -0.803792 | 2.943339e-49 | -8.615850e-47 |
| Msa0435250 | Msa1328680 | -0.806254 | 8.995931e-50 | -8.615850e-47 |
| Msa0435250 | Msa1341710 | -0.808176 | 3.521881e-50 | -8.615850e-47 |
| Msa0435250 | Msa1342360 | -0.804126 | 2.508175e-49 | -8.615850e-47 |
| Msa0435250 | Msa1356100 | -0.822196 | 2.696140e-53 | -8.615850e-47 |
| Msa0435250 | Msa1377980 | -0.815112 | 1.092550e-51 | -8.615850e-47 |
| Msa0435250 | Msa1386910 | -0.801799 | 7.591223e-49 | -8.615850e-47 |
| Msa0435250 | Msa1408230 | -0.803676 | 3.110879e-49 | -8.615850e-47 |
| Msa0435250 | Msa1408280 | -0.816310 | 5.906056e-52 | -8.615850e-47 |
| Msa0435250 | Msa1422160 | -0.815654 | 8.274290e-52 | -8.615850e-47 |
| Msa0435250 | Msa1424490 | -0.804695 | 1.909268e-49 | -8.615850e-47 |
| Msa0435250 | Msa1461840 | -0.802184 | 6.327853e-49 | -8.615850e-47 |
| Msa0270730 | Msa0435250 | -0.802523 | 5.387031e-49 | -8.615850e-47 |
| Msa0334320 | Msa0435250 | 0.800397 | 1.469465e-48 | -8.615850e-47 |
| Msa0358750 | Msa0435250 | -0.816065 | 6.699582e-52 | -8.615850e-47 |
| Msa0364030 | Msa0435250 | -0.800771 | 1.232564e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435250 | MtrunA17_Chr3g0142181 | 99.405 | 168 | 1 | 0 | 1 | 168 | 215 | 382 | 1.87e-115 | 332 |
| Msa0435250 | MtrunA17_Chr4g0024991 | 68.831 | 154 | 48 | 0 | 1 | 154 | 212 | 365 | 1.55e-64 | 202 |
| Msa0435250 | MtrunA17_Chr4g0075171 | 57.764 | 161 | 68 | 0 | 1 | 161 | 207 | 367 | 3.32e-53 | 172 |
| Msa0435250 | MtrunA17_Chr4g0056691 | 43.373 | 166 | 89 | 2 | 1 | 163 | 345 | 508 | 7.83e-37 | 133 |
| Msa0435250 | MtrunA17_Chr6g0462881 | 43.976 | 166 | 88 | 2 | 1 | 163 | 385 | 548 | 6.23e-36 | 131 |
| Msa0435250 | MtrunA17_Chr6g0462891 | 42.771 | 166 | 90 | 2 | 1 | 163 | 394 | 557 | 1.47e-35 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435250 | AT1G62262.1 | 68.590 | 156 | 49 | 0 | 1 | 156 | 195 | 350 | 4.84e-74 | 226 |
| Msa0435250 | AT1G62280.1 | 65.432 | 162 | 55 | 1 | 1 | 162 | 203 | 363 | 8.68e-71 | 219 |
| Msa0435250 | AT4G27970.3 | 45.181 | 166 | 86 | 2 | 1 | 163 | 151 | 314 | 3.10e-41 | 142 |
| Msa0435250 | AT4G27970.5 | 45.181 | 166 | 86 | 2 | 1 | 163 | 151 | 314 | 3.10e-41 | 142 |
| Msa0435250 | AT4G27970.1 | 45.181 | 166 | 86 | 2 | 1 | 163 | 300 | 463 | 6.82e-40 | 141 |
| Msa0435250 | AT4G27970.6 | 45.181 | 166 | 86 | 2 | 1 | 163 | 300 | 463 | 6.82e-40 | 141 |
| Msa0435250 | AT5G24030.1 | 43.976 | 166 | 88 | 2 | 1 | 163 | 415 | 578 | 4.40e-39 | 140 |
| Msa0435250 | AT1G12480.1 | 43.976 | 166 | 88 | 2 | 1 | 163 | 348 | 511 | 6.66e-31 | 117 |
| Msa0435250 | AT5G24030.2 | 52.222 | 90 | 43 | 0 | 1 | 90 | 415 | 504 | 2.76e-25 | 101 |
| Msa0435250 | AT4G27970.4 | 55.952 | 84 | 37 | 0 | 1 | 84 | 300 | 383 | 1.18e-23 | 95.9 |
| Msa0435250 | AT4G27970.2 | 55.952 | 84 | 37 | 0 | 1 | 84 | 300 | 383 | 1.18e-23 | 95.9 |
Find 39 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGGGATGGTGCATTATT+TGG | 0.229252 | 3_2:+88383960 | Msa0435250:CDS |
| AGAGAATGAGCATTAGAATA+TGG | 0.254966 | 3_2:-88385575 | None:intergenic |
| GTTGAATTAAACAGGTTTGC+AGG | 0.323138 | 3_2:+88385430 | Msa0435250:intron |
| TTCTTGTTCTTTGCAGCACC+TGG | 0.340908 | 3_2:+88384054 | Msa0435250:CDS |
| CCAGTGACATGAAGAGGAAT+AGG | 0.350256 | 3_2:-88384149 | None:intergenic |
| AGCACCTGGTGTGGCTAGTC+TGG | 0.355273 | 3_2:+88384068 | Msa0435250:CDS |
| CTTGCAATGGGATCGTTATC+TGG | 0.374425 | 3_2:-88385666 | None:intergenic |
| GCCATAGCAAGTACGGTAAC+AGG | 0.385140 | 3_2:-88385513 | None:intergenic |
| GCAAAGAACAAGAAGAAAAC+TGG | 0.389582 | 3_2:-88384045 | None:intergenic |
| TTCTCATAGATCTCTTGAAT+AGG | 0.405405 | 3_2:-88385458 | None:intergenic |
| CTGGTGTGGCTAGTCTGGCT+TGG | 0.416273 | 3_2:+88384073 | Msa0435250:CDS |
| TCTCATAGATCTCTTGAATA+GGG | 0.431380 | 3_2:-88385457 | None:intergenic |
| TATTCTAATGCTCATTCTCT+TGG | 0.436966 | 3_2:+88385578 | Msa0435250:CDS |
| TCCTGTTACCGTACTTGCTA+TGG | 0.437754 | 3_2:+88385512 | Msa0435250:CDS |
| CTGGCTTGGGAATCTATTGT+TGG | 0.443643 | 3_2:+88384087 | Msa0435250:CDS |
| TGGTGTGGCTAGTCTGGCTT+GGG | 0.445650 | 3_2:+88384074 | Msa0435250:CDS |
| CCTATTCCTCTTCATGTCAC+TGG | 0.453775 | 3_2:+88384149 | Msa0435250:CDS |
| GAGAATGAGCATTAGAATAT+GGG | 0.464878 | 3_2:-88385574 | None:intergenic |
| ATCGTCTTCCTGCGTTGTTA+AGG | 0.478539 | 3_2:+88384022 | Msa0435250:CDS |
| ACACTTTATCAAAGGTTGTC+TGG | 0.479220 | 3_2:+88383994 | Msa0435250:CDS |
| AACAATGAGGATGCTTGCAA+TGG | 0.505203 | 3_2:-88385679 | None:intergenic |
| ATAGATCTCTTGAATAGGGC+TGG | 0.514231 | 3_2:-88385453 | None:intergenic |
| CAGTGACATGAAGAGGAATA+GGG | 0.514535 | 3_2:-88384148 | None:intergenic |
| TGTAGAAGCCATAGCAAGTA+CGG | 0.530020 | 3_2:-88385520 | None:intergenic |
| ACAATGAGGATGCTTGCAAT+GGG | 0.531962 | 3_2:-88385678 | None:intergenic |
| AAGCTGCAGCAGAAATGGGT+TGG | 0.541897 | 3_2:+88383911 | None:intergenic |
| AAGGTTTAATGTTGCATGGT+GGG | 0.544626 | 3_2:+88385479 | Msa0435250:CDS |
| TATATACCAGTGACATGAAG+AGG | 0.567022 | 3_2:-88384155 | None:intergenic |
| AGCAAGTACGGTAACAGGAA+AGG | 0.591295 | 3_2:-88385508 | None:intergenic |
| TGTTTGTGACACTTTATCAA+AGG | 0.592867 | 3_2:+88383986 | Msa0435250:CDS |
| TATTCAAGAGATCTATGAGA+AGG | 0.595617 | 3_2:+88385460 | Msa0435250:CDS |
| GTTCTTTGCAGCACCTGGTG+TGG | 0.596453 | 3_2:+88384059 | Msa0435250:CDS |
| CAAGCCAGACTAGCCACACC+AGG | 0.597287 | 3_2:-88384072 | None:intergenic |
| AATAAATGAATTAAACAATG+AGG | 0.610002 | 3_2:-88385692 | None:intergenic |
| AATTATGCACAACAAGTCAA+AGG | 0.620636 | 3_2:+88385543 | Msa0435250:CDS |
| TGAGAAGGTTTAATGTTGCA+TGG | 0.624928 | 3_2:+88385475 | Msa0435250:CDS |
| CTTTATCAAAGGTTGTCTGG+TGG | 0.678296 | 3_2:+88383997 | Msa0435250:CDS |
| AAAACTGGCCTTAACAACGC+AGG | 0.680269 | 3_2:-88384030 | None:intergenic |
| GAAGGTTTAATGTTGCATGG+TGG | 0.712532 | 3_2:+88385478 | Msa0435250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATATTTCAAAATTG+AGG | + | chr3_2:88384503-88384522 | Msa0435250:intron | 10.0% |
| !!! | AATTAGTATTTTGAATTATA+TGG | + | chr3_2:88385172-88385191 | Msa0435250:intron | 10.0% |
| !! | ATGTAACTTAATTAATTATT+AGG | - | chr3_2:88385365-88385384 | None:intergenic | 10.0% |
| !! | TAAATATTAATCAATATTTC+AGG | - | chr3_2:88385404-88385423 | None:intergenic | 10.0% |
| !! | TATTTAATATTTCAAAATTG+AGG | + | chr3_2:88384503-88384522 | Msa0435250:intron | 10.0% |
| !!! | AATTAGTATTTTGAATTATA+TGG | + | chr3_2:88385172-88385191 | Msa0435250:intron | 10.0% |
| !! | ATGTAACTTAATTAATTATT+AGG | - | chr3_2:88385365-88385384 | None:intergenic | 10.0% |
| !! | TAAATATTAATCAATATTTC+AGG | - | chr3_2:88385404-88385423 | None:intergenic | 10.0% |
| !!! | AATAAATGATGATTTTGTAA+AGG | - | chr3_2:88384253-88384272 | None:intergenic | 15.0% |
| !!! | TATAAAGTCACTTATAATTT+TGG | + | chr3_2:88384400-88384419 | Msa0435250:intron | 15.0% |
| !! | AATAAATCATTATCTTCATA+GGG | - | chr3_2:88384483-88384502 | None:intergenic | 15.0% |
| !! | AAATAAATCATTATCTTCAT+AGG | - | chr3_2:88384484-88384503 | None:intergenic | 15.0% |
| !!! | CTATTTTTACAAAAAAAATC+TGG | + | chr3_2:88384906-88384925 | Msa0435250:intron | 15.0% |
| !! | TAATTTATGTTGAATTAAAC+AGG | + | chr3_2:88385422-88385441 | Msa0435250:intron | 15.0% |
| !!! | AATAAATGATGATTTTGTAA+AGG | - | chr3_2:88384253-88384272 | None:intergenic | 15.0% |
| !!! | TATAAAGTCACTTATAATTT+TGG | + | chr3_2:88384400-88384419 | Msa0435250:intron | 15.0% |
| !! | AATAAATCATTATCTTCATA+GGG | - | chr3_2:88384483-88384502 | None:intergenic | 15.0% |
| !! | AAATAAATCATTATCTTCAT+AGG | - | chr3_2:88384484-88384503 | None:intergenic | 15.0% |
| !!! | CTATTTTTACAAAAAAAATC+TGG | + | chr3_2:88384906-88384925 | Msa0435250:intron | 15.0% |
| !! | TAATTTATGTTGAATTAAAC+AGG | + | chr3_2:88385422-88385441 | Msa0435250:intron | 15.0% |
| !! | ATCATCATTTATTAATGATG+TGG | + | chr3_2:88384260-88384279 | Msa0435250:intron | 20.0% |
| !!! | TTTTACAAAGTATGATAGAA+AGG | + | chr3_2:88384316-88384335 | Msa0435250:intron | 20.0% |
| !! | AACAACTACAGTTTAAATTA+GGG | - | chr3_2:88384435-88384454 | None:intergenic | 20.0% |
| !!! | TTTTACAAAAAAAATCTGGT+AGG | + | chr3_2:88384910-88384929 | Msa0435250:intron | 20.0% |
| !! | CATGTACTTATAAATTGATA+GGG | - | chr3_2:88384957-88384976 | None:intergenic | 20.0% |
| !! | AAATTCAAACTTATCAATTG+AGG | - | chr3_2:88385219-88385238 | None:intergenic | 20.0% |
| !! | ATCATCATTTATTAATGATG+TGG | + | chr3_2:88384260-88384279 | Msa0435250:intron | 20.0% |
| !!! | TTTTACAAAGTATGATAGAA+AGG | + | chr3_2:88384316-88384335 | Msa0435250:intron | 20.0% |
| !! | AACAACTACAGTTTAAATTA+GGG | - | chr3_2:88384435-88384454 | None:intergenic | 20.0% |
| !!! | TTTTACAAAAAAAATCTGGT+AGG | + | chr3_2:88384910-88384929 | Msa0435250:intron | 20.0% |
| !! | CATGTACTTATAAATTGATA+GGG | - | chr3_2:88384957-88384976 | None:intergenic | 20.0% |
| !! | AAATTCAAACTTATCAATTG+AGG | - | chr3_2:88385219-88385238 | None:intergenic | 20.0% |
| ! | CAACAACTACAGTTTAAATT+AGG | - | chr3_2:88384436-88384455 | None:intergenic | 25.0% |
| ! | TTCTTACTGGTCAAAAATAA+TGG | + | chr3_2:88384757-88384776 | Msa0435250:intron | 25.0% |
| !! | AAAATAATGGAGAGAGAAAA+AGG | + | chr3_2:88384770-88384789 | Msa0435250:intron | 25.0% |
| ! | TCATTTCTATTAGACAAAAC+AGG | + | chr3_2:88384871-88384890 | Msa0435250:intron | 25.0% |
| !!! | TGTAAAAATAGTGTTGACTA+AGG | - | chr3_2:88384897-88384916 | None:intergenic | 25.0% |
| ! | GCATGTACTTATAAATTGAT+AGG | - | chr3_2:88384958-88384977 | None:intergenic | 25.0% |
| ! | CAAGTAACTGTCAATTAATA+AGG | - | chr3_2:88385045-88385064 | None:intergenic | 25.0% |
| ! | TTGATAAGTTTGAATTTACC+CGG | + | chr3_2:88385222-88385241 | Msa0435250:intron | 25.0% |
| !!! | TAGAGATTAATCTTTAGAAC+CGG | - | chr3_2:88385244-88385263 | None:intergenic | 25.0% |
| ! | TTAATCTCTACATAGAGAAT+AGG | + | chr3_2:88385254-88385273 | Msa0435250:intron | 25.0% |
| ! | CAACAACTACAGTTTAAATT+AGG | - | chr3_2:88384436-88384455 | None:intergenic | 25.0% |
| ! | TTCTTACTGGTCAAAAATAA+TGG | + | chr3_2:88384757-88384776 | Msa0435250:intron | 25.0% |
| !! | AAAATAATGGAGAGAGAAAA+AGG | + | chr3_2:88384770-88384789 | Msa0435250:intron | 25.0% |
| ! | TCATTTCTATTAGACAAAAC+AGG | + | chr3_2:88384871-88384890 | Msa0435250:intron | 25.0% |
| !!! | TGTAAAAATAGTGTTGACTA+AGG | - | chr3_2:88384897-88384916 | None:intergenic | 25.0% |
| ! | GCATGTACTTATAAATTGAT+AGG | - | chr3_2:88384958-88384977 | None:intergenic | 25.0% |
| ! | CAAGTAACTGTCAATTAATA+AGG | - | chr3_2:88385045-88385064 | None:intergenic | 25.0% |
| ! | TTGATAAGTTTGAATTTACC+CGG | + | chr3_2:88385222-88385241 | Msa0435250:intron | 25.0% |
| !!! | TAGAGATTAATCTTTAGAAC+CGG | - | chr3_2:88385244-88385263 | None:intergenic | 25.0% |
| ! | TTAATCTCTACATAGAGAAT+AGG | + | chr3_2:88385254-88385273 | Msa0435250:intron | 25.0% |
| !! | CTGTGTGTTTGTTTTCATTA+GGG | + | chr3_2:88383944-88383963 | Msa0435250:CDS | 30.0% |
| TGTTTGTGACACTTTATCAA+AGG | + | chr3_2:88383986-88384005 | Msa0435250:CDS | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr3_2:88384719-88384738 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTCACTTCTTAC+TGG | + | chr3_2:88384744-88384763 | Msa0435250:intron | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr3_2:88384842-88384861 | None:intergenic | 30.0% |
| TAGGGACATTCTATATTGTA+CGG | - | chr3_2:88384939-88384958 | None:intergenic | 30.0% | |
| ! | CTTGATTTTGTGCTGTAATT+TGG | + | chr3_2:88385000-88385019 | Msa0435250:intron | 30.0% |
| TAGATAACATGACTTGACAT+TGG | - | chr3_2:88385124-88385143 | None:intergenic | 30.0% | |
| ACTTATCAATTGAGGTTAAG+TGG | - | chr3_2:88385211-88385230 | None:intergenic | 30.0% | |
| !! | AGAGATTAATCTTTAGAACC+GGG | - | chr3_2:88385243-88385262 | None:intergenic | 30.0% |
| TCTCATAGATCTCTTGAATA+GGG | - | chr3_2:88385460-88385479 | None:intergenic | 30.0% | |
| TTCTCATAGATCTCTTGAAT+AGG | - | chr3_2:88385461-88385480 | None:intergenic | 30.0% | |
| TATTCAAGAGATCTATGAGA+AGG | + | chr3_2:88385460-88385479 | Msa0435250:CDS | 30.0% | |
| AATTATGCACAACAAGTCAA+AGG | + | chr3_2:88385543-88385562 | Msa0435250:CDS | 30.0% | |
| GAGAATGAGCATTAGAATAT+GGG | - | chr3_2:88385577-88385596 | None:intergenic | 30.0% | |
| AGAGAATGAGCATTAGAATA+TGG | - | chr3_2:88385578-88385597 | None:intergenic | 30.0% | |
| TATTCTAATGCTCATTCTCT+TGG | + | chr3_2:88385578-88385597 | Msa0435250:CDS | 30.0% | |
| !! | CTGTGTGTTTGTTTTCATTA+GGG | + | chr3_2:88383944-88383963 | Msa0435250:CDS | 30.0% |
| TGTTTGTGACACTTTATCAA+AGG | + | chr3_2:88383986-88384005 | Msa0435250:CDS | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr3_2:88384719-88384738 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCTCACTTCTTAC+TGG | + | chr3_2:88384744-88384763 | Msa0435250:intron | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr3_2:88384842-88384861 | None:intergenic | 30.0% |
| TAGGGACATTCTATATTGTA+CGG | - | chr3_2:88384939-88384958 | None:intergenic | 30.0% | |
| ! | CTTGATTTTGTGCTGTAATT+TGG | + | chr3_2:88385000-88385019 | Msa0435250:intron | 30.0% |
| TAGATAACATGACTTGACAT+TGG | - | chr3_2:88385124-88385143 | None:intergenic | 30.0% | |
| ACTTATCAATTGAGGTTAAG+TGG | - | chr3_2:88385211-88385230 | None:intergenic | 30.0% | |
| !! | AGAGATTAATCTTTAGAACC+GGG | - | chr3_2:88385243-88385262 | None:intergenic | 30.0% |
| TCTCATAGATCTCTTGAATA+GGG | - | chr3_2:88385460-88385479 | None:intergenic | 30.0% | |
| TTCTCATAGATCTCTTGAAT+AGG | - | chr3_2:88385461-88385480 | None:intergenic | 30.0% | |
| TATTCAAGAGATCTATGAGA+AGG | + | chr3_2:88385460-88385479 | Msa0435250:CDS | 30.0% | |
| AATTATGCACAACAAGTCAA+AGG | + | chr3_2:88385543-88385562 | Msa0435250:CDS | 30.0% | |
| GAGAATGAGCATTAGAATAT+GGG | - | chr3_2:88385577-88385596 | None:intergenic | 30.0% | |
| AGAGAATGAGCATTAGAATA+TGG | - | chr3_2:88385578-88385597 | None:intergenic | 30.0% | |
| TATTCTAATGCTCATTCTCT+TGG | + | chr3_2:88385578-88385597 | Msa0435250:CDS | 30.0% | |
| !! | GCTGTGTGTTTGTTTTCATT+AGG | + | chr3_2:88383943-88383962 | Msa0435250:CDS | 35.0% |
| !! | GTGTTTGTTTTCATTAGGGA+TGG | + | chr3_2:88383948-88383967 | Msa0435250:CDS | 35.0% |
| ATTAGGGATGGTGCATTATT+TGG | + | chr3_2:88383960-88383979 | Msa0435250:CDS | 35.0% | |
| ACACTTTATCAAAGGTTGTC+TGG | + | chr3_2:88383994-88384013 | Msa0435250:CDS | 35.0% | |
| GCAAAGAACAAGAAGAAAAC+TGG | - | chr3_2:88384048-88384067 | None:intergenic | 35.0% | |
| TATATACCAGTGACATGAAG+AGG | - | chr3_2:88384158-88384177 | None:intergenic | 35.0% | |
| GTAAACCTTGTCATTACTTG+AGG | - | chr3_2:88384556-88384575 | None:intergenic | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr3_2:88384837-88384856 | Msa0435250:intron | 35.0% | |
| TGTAATTTGGACGTACAAGA+TGG | + | chr3_2:88385013-88385032 | Msa0435250:intron | 35.0% | |
| GTTGAATTAAACAGGTTTGC+AGG | + | chr3_2:88385430-88385449 | Msa0435250:intron | 35.0% | |
| TGAGAAGGTTTAATGTTGCA+TGG | + | chr3_2:88385475-88385494 | Msa0435250:CDS | 35.0% | |
| AAGGTTTAATGTTGCATGGT+GGG | + | chr3_2:88385479-88385498 | Msa0435250:CDS | 35.0% | |
| !! | GCTGTGTGTTTGTTTTCATT+AGG | + | chr3_2:88383943-88383962 | Msa0435250:CDS | 35.0% |
| !! | GTGTTTGTTTTCATTAGGGA+TGG | + | chr3_2:88383948-88383967 | Msa0435250:CDS | 35.0% |
| ATTAGGGATGGTGCATTATT+TGG | + | chr3_2:88383960-88383979 | Msa0435250:CDS | 35.0% | |
| ACACTTTATCAAAGGTTGTC+TGG | + | chr3_2:88383994-88384013 | Msa0435250:CDS | 35.0% | |
| GCAAAGAACAAGAAGAAAAC+TGG | - | chr3_2:88384048-88384067 | None:intergenic | 35.0% | |
| TATATACCAGTGACATGAAG+AGG | - | chr3_2:88384158-88384177 | None:intergenic | 35.0% | |
| GTAAACCTTGTCATTACTTG+AGG | - | chr3_2:88384556-88384575 | None:intergenic | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr3_2:88384837-88384856 | Msa0435250:intron | 35.0% | |
| TGTAATTTGGACGTACAAGA+TGG | + | chr3_2:88385013-88385032 | Msa0435250:intron | 35.0% | |
| GTTGAATTAAACAGGTTTGC+AGG | + | chr3_2:88385430-88385449 | Msa0435250:intron | 35.0% | |
| TGAGAAGGTTTAATGTTGCA+TGG | + | chr3_2:88385475-88385494 | Msa0435250:CDS | 35.0% | |
| AAGGTTTAATGTTGCATGGT+GGG | + | chr3_2:88385479-88385498 | Msa0435250:CDS | 35.0% | |
| CTTTATCAAAGGTTGTCTGG+TGG | + | chr3_2:88383997-88384016 | Msa0435250:CDS | 40.0% | |
| !! | GGACAAAAAGAAGAGCATCT+TGG | - | chr3_2:88384130-88384149 | None:intergenic | 40.0% |
| CAGTGACATGAAGAGGAATA+GGG | - | chr3_2:88384151-88384170 | None:intergenic | 40.0% | |
| CTCTTCCTCAAGTAATGACA+AGG | + | chr3_2:88384548-88384567 | Msa0435250:intron | 40.0% | |
| GTAATGACAAGGTTTACAGC+TGG | + | chr3_2:88384559-88384578 | Msa0435250:intron | 40.0% | |
| GAGAGAGAAAAAGGAAGAGA+GGG | + | chr3_2:88384779-88384798 | Msa0435250:intron | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+GGG | + | chr3_2:88384780-88384799 | Msa0435250:intron | 40.0% | |
| TTTGGACGTACAAGATGGAA+AGG | + | chr3_2:88385018-88385037 | Msa0435250:intron | 40.0% | |
| GTTGGACAGATTGTAGGAAA+AGG | - | chr3_2:88385100-88385119 | None:intergenic | 40.0% | |
| ATTGGAGTTGGACAGATTGT+AGG | - | chr3_2:88385106-88385125 | None:intergenic | 40.0% | |
| ACATGACTTGACATTGGAGT+TGG | - | chr3_2:88385118-88385137 | None:intergenic | 40.0% | |
| ATAGATCTCTTGAATAGGGC+TGG | - | chr3_2:88385456-88385475 | None:intergenic | 40.0% | |
| GAAGGTTTAATGTTGCATGG+TGG | + | chr3_2:88385478-88385497 | Msa0435250:CDS | 40.0% | |
| TGTAGAAGCCATAGCAAGTA+CGG | - | chr3_2:88385523-88385542 | None:intergenic | 40.0% | |
| ACAATGAGGATGCTTGCAAT+GGG | - | chr3_2:88385681-88385700 | None:intergenic | 40.0% | |
| AACAATGAGGATGCTTGCAA+TGG | - | chr3_2:88385682-88385701 | None:intergenic | 40.0% | |
| CTTTATCAAAGGTTGTCTGG+TGG | + | chr3_2:88383997-88384016 | Msa0435250:CDS | 40.0% | |
| !! | GGACAAAAAGAAGAGCATCT+TGG | - | chr3_2:88384130-88384149 | None:intergenic | 40.0% |
| CAGTGACATGAAGAGGAATA+GGG | - | chr3_2:88384151-88384170 | None:intergenic | 40.0% | |
| CTCTTCCTCAAGTAATGACA+AGG | + | chr3_2:88384548-88384567 | Msa0435250:intron | 40.0% | |
| GTAATGACAAGGTTTACAGC+TGG | + | chr3_2:88384559-88384578 | Msa0435250:intron | 40.0% | |
| GAGAGAGAAAAAGGAAGAGA+GGG | + | chr3_2:88384779-88384798 | Msa0435250:intron | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+GGG | + | chr3_2:88384780-88384799 | Msa0435250:intron | 40.0% | |
| TTTGGACGTACAAGATGGAA+AGG | + | chr3_2:88385018-88385037 | Msa0435250:intron | 40.0% | |
| GTTGGACAGATTGTAGGAAA+AGG | - | chr3_2:88385100-88385119 | None:intergenic | 40.0% | |
| ATTGGAGTTGGACAGATTGT+AGG | - | chr3_2:88385106-88385125 | None:intergenic | 40.0% | |
| ACATGACTTGACATTGGAGT+TGG | - | chr3_2:88385118-88385137 | None:intergenic | 40.0% | |
| ATAGATCTCTTGAATAGGGC+TGG | - | chr3_2:88385456-88385475 | None:intergenic | 40.0% | |
| GAAGGTTTAATGTTGCATGG+TGG | + | chr3_2:88385478-88385497 | Msa0435250:CDS | 40.0% | |
| TGTAGAAGCCATAGCAAGTA+CGG | - | chr3_2:88385523-88385542 | None:intergenic | 40.0% | |
| ACAATGAGGATGCTTGCAAT+GGG | - | chr3_2:88385681-88385700 | None:intergenic | 40.0% | |
| AACAATGAGGATGCTTGCAA+TGG | - | chr3_2:88385682-88385701 | None:intergenic | 40.0% | |
| ATCGTCTTCCTGCGTTGTTA+AGG | + | chr3_2:88384022-88384041 | Msa0435250:CDS | 45.0% | |
| !! | AAAACTGGCCTTAACAACGC+AGG | - | chr3_2:88384033-88384052 | None:intergenic | 45.0% |
| TTCTTGTTCTTTGCAGCACC+TGG | + | chr3_2:88384054-88384073 | Msa0435250:CDS | 45.0% | |
| !! | CTGGCTTGGGAATCTATTGT+TGG | + | chr3_2:88384087-88384106 | Msa0435250:CDS | 45.0% |
| CCAGTGACATGAAGAGGAAT+AGG | - | chr3_2:88384152-88384171 | None:intergenic | 45.0% | |
| CCTATTCCTCTTCATGTCAC+TGG | + | chr3_2:88384149-88384168 | Msa0435250:CDS | 45.0% | |
| GGAGAGAGAAAAAGGAAGAG+AGG | + | chr3_2:88384778-88384797 | Msa0435250:intron | 45.0% | |
| AGCAAGTACGGTAACAGGAA+AGG | - | chr3_2:88385511-88385530 | None:intergenic | 45.0% | |
| ! | TCCTGTTACCGTACTTGCTA+TGG | + | chr3_2:88385512-88385531 | Msa0435250:CDS | 45.0% |
| CTTGCAATGGGATCGTTATC+TGG | - | chr3_2:88385669-88385688 | None:intergenic | 45.0% | |
| ATCGTCTTCCTGCGTTGTTA+AGG | + | chr3_2:88384022-88384041 | Msa0435250:CDS | 45.0% | |
| !! | AAAACTGGCCTTAACAACGC+AGG | - | chr3_2:88384033-88384052 | None:intergenic | 45.0% |
| TTCTTGTTCTTTGCAGCACC+TGG | + | chr3_2:88384054-88384073 | Msa0435250:CDS | 45.0% | |
| !! | CTGGCTTGGGAATCTATTGT+TGG | + | chr3_2:88384087-88384106 | Msa0435250:CDS | 45.0% |
| CCAGTGACATGAAGAGGAAT+AGG | - | chr3_2:88384152-88384171 | None:intergenic | 45.0% | |
| CCTATTCCTCTTCATGTCAC+TGG | + | chr3_2:88384149-88384168 | Msa0435250:CDS | 45.0% | |
| GGAGAGAGAAAAAGGAAGAG+AGG | + | chr3_2:88384778-88384797 | Msa0435250:intron | 45.0% | |
| AGCAAGTACGGTAACAGGAA+AGG | - | chr3_2:88385511-88385530 | None:intergenic | 45.0% | |
| ! | TCCTGTTACCGTACTTGCTA+TGG | + | chr3_2:88385512-88385531 | Msa0435250:CDS | 45.0% |
| CTTGCAATGGGATCGTTATC+TGG | - | chr3_2:88385669-88385688 | None:intergenic | 45.0% | |
| GCCATAGCAAGTACGGTAAC+AGG | - | chr3_2:88385516-88385535 | None:intergenic | 50.0% | |
| GCCATAGCAAGTACGGTAAC+AGG | - | chr3_2:88385516-88385535 | None:intergenic | 50.0% | |
| GTTCTTTGCAGCACCTGGTG+TGG | + | chr3_2:88384059-88384078 | Msa0435250:CDS | 55.0% | |
| !! | TGGTGTGGCTAGTCTGGCTT+GGG | + | chr3_2:88384074-88384093 | Msa0435250:CDS | 55.0% |
| GTTCTTTGCAGCACCTGGTG+TGG | + | chr3_2:88384059-88384078 | Msa0435250:CDS | 55.0% | |
| !! | TGGTGTGGCTAGTCTGGCTT+GGG | + | chr3_2:88384074-88384093 | Msa0435250:CDS | 55.0% |
| ! | AGCACCTGGTGTGGCTAGTC+TGG | + | chr3_2:88384068-88384087 | Msa0435250:CDS | 60.0% |
| ! | CAAGCCAGACTAGCCACACC+AGG | - | chr3_2:88384075-88384094 | None:intergenic | 60.0% |
| !! | CTGGTGTGGCTAGTCTGGCT+TGG | + | chr3_2:88384073-88384092 | Msa0435250:CDS | 60.0% |
| ! | AGCACCTGGTGTGGCTAGTC+TGG | + | chr3_2:88384068-88384087 | Msa0435250:CDS | 60.0% |
| ! | CAAGCCAGACTAGCCACACC+AGG | - | chr3_2:88384075-88384094 | None:intergenic | 60.0% |
| !! | CTGGTGTGGCTAGTCTGGCT+TGG | + | chr3_2:88384073-88384092 | Msa0435250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88383925 | 88385704 | 88383925 | ID=Msa0435250;Name=Msa0435250 |
| chr3_2 | mRNA | 88383925 | 88385704 | 88383925 | ID=Msa0435250-mRNA-1;Parent=Msa0435250;Name=Msa0435250-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|168 |
| chr3_2 | exon | 88383925 | 88384170 | 88383925 | ID=Msa0435250-mRNA-1:exon:25942;Parent=Msa0435250-mRNA-1 |
| chr3_2 | exon | 88385444 | 88385704 | 88385444 | ID=Msa0435250-mRNA-1:exon:25943;Parent=Msa0435250-mRNA-1 |
| chr3_2 | CDS | 88383925 | 88384170 | 88383925 | ID=Msa0435250-mRNA-1:cds;Parent=Msa0435250-mRNA-1 |
| chr3_2 | CDS | 88385444 | 88385704 | 88385444 | ID=Msa0435250-mRNA-1:cds;Parent=Msa0435250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
