AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0984230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984230 MtrunA17_Chr3g0129661 98.837 172 2 0 1 172 1 172 8.37e-125 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984230 AT5G64040.1 70.455 176 43 4 1 172 1 171 1.21e-82 241
Msa0984230 AT5G64040.2 66.667 147 40 4 1 143 1 142 6.41e-58 179

Find 64 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTTGCTCTTGATTCTT+TGG 0.156495 6_4:+28058540 None:intergenic
GAGAAATGCTCTTGCTTTAT+TGG 0.157047 6_4:-28058512 Msa0984230:CDS
GCTGCATCACCAGGGGTTTC+AGG 0.166988 6_4:-28058610 Msa0984230:CDS
GCTCTTGATTCTTTGGCTTC+AGG 0.250361 6_4:+28058547 None:intergenic
ACCATTCATTACAGAAGATT+TGG 0.264682 6_4:-28056686 Msa0984230:CDS
ATTAGGCATGCCTCTCCTTT+TGG 0.321597 6_4:-28056466 Msa0984230:three_prime_UTR
AACTTATTTGTTGCTTTACT+TGG 0.327510 6_4:-28056375 Msa0984230:three_prime_UTR
GTATAACTATATTATGGAAT+TGG 0.338714 6_4:+28056347 None:intergenic
GTGCCCTCTGCTGCATCACC+AGG 0.354143 6_4:-28058619 Msa0984230:CDS
CTTGTTGTATAACTATATTA+TGG 0.362427 6_4:+28056341 None:intergenic
GCCAGCATTGGCAGAAGAAT+TGG 0.362944 6_4:+28058456 None:intergenic
AGAGCATATACAGTGCAATT+TGG 0.365802 6_4:-28056872 Msa0984230:CDS
GCTTGTAGCTATGCCATATC+TGG 0.368961 6_4:-28058670 Msa0984230:CDS
CCTTCTGTTTAGCAAGATCT+TGG 0.372726 6_4:+28056816 None:intergenic
AGATTGCATTGATTTCCTAT+TGG 0.400341 6_4:+28058857 None:intergenic
AGAGAACAAGATTTGCCAAT+AGG 0.418223 6_4:-28058872 None:intergenic
TGGCAACCAGTGAAATTCTC+AGG 0.421964 6_4:+28056836 None:intergenic
TCTTGCAAAGTTTGCTCCAC+TGG 0.422179 6_4:+28056892 None:intergenic
CTGAAACAGCAGTGGTGAAA+AGG 0.440735 6_4:+28058482 None:intergenic
ATTGAGCTCAGCACCAGATA+TGG 0.446987 6_4:+28058657 None:intergenic
TTGTGGTTGGCGTGTGGATA+AGG 0.447550 6_4:+28058832 None:intergenic
TCCAATTCTTCTGCCAATGC+TGG 0.447703 6_4:-28058457 Msa0984230:CDS
ACTTGTTGAGCCTTGATCAA+TGG 0.461753 6_4:+28058577 None:intergenic
TCCAAATCTTCTGTAATGAA+TGG 0.478789 6_4:+28056685 None:intergenic
GATAACTTGAAAGGAGATGT+AGG 0.496797 6_4:-28056282 Msa0984230:three_prime_UTR
AAGTTCCCTGAGAATTTCAC+TGG 0.504808 6_4:-28056842 Msa0984230:CDS
CTTATGTTGCAAGGAACAAA+GGG 0.505444 6_4:+28058797 None:intergenic
TGCCCTCTGCTGCATCACCA+GGG 0.515970 6_4:-28058618 Msa0984230:CDS
GACTCTAGAAGAGTACCAAA+AGG 0.517836 6_4:+28056451 None:intergenic
TGCAAAGTTTGCTCCACTGG+TGG 0.527812 6_4:+28056895 None:intergenic
TTCATCAATAACGCCAGCAT+TGG 0.528232 6_4:+28058444 None:intergenic
GCCCTCTGCTGCATCACCAG+GGG 0.536993 6_4:-28058617 Msa0984230:CDS
TGAAACAGCAGTGGTGAAAA+GGG 0.537677 6_4:+28058483 None:intergenic
GGAACTTGAATGTGAAGGAA+AGG 0.538060 6_4:-28056665 Msa0984230:CDS
ACTTATGTTGCAAGGAACAA+AGG 0.551246 6_4:+28058796 None:intergenic
CATTGCAGCCATGTGTATTG+TGG 0.551968 6_4:+28058708 None:intergenic
AAGAACATTGTTGTGAATCA+CGG 0.553508 6_4:-28056321 Msa0984230:three_prime_UTR
TATCAAGCTACCATTGATCA+AGG 0.554113 6_4:-28058587 Msa0984230:CDS
AGAACATTGTTGTGAATCAC+GGG 0.556350 6_4:-28056320 Msa0984230:three_prime_UTR
TTAAGTCAACTTATGTTGCA+AGG 0.560354 6_4:+28058788 None:intergenic
AATCAAGAGCAAGTGATGGA+AGG 0.560441 6_4:-28058534 Msa0984230:CDS
AACCCCTGGTGATGCAGCAG+AGG 0.560571 6_4:+28058615 None:intergenic
GAGTTCGAAGATAACTTGAA+AGG 0.574788 6_4:-28056291 Msa0984230:three_prime_UTR
AAAGAATCAAGAGCAAGTGA+TGG 0.584476 6_4:-28058538 Msa0984230:CDS
AGCATTGGCAGAAGAATTGG+AGG 0.586473 6_4:+28058459 None:intergenic
AGGAATTGAATGACAAGAAG+AGG 0.586876 6_4:-28056922 Msa0984230:CDS
ACCCCTGGTGATGCAGCAGA+GGG 0.591324 6_4:+28058616 None:intergenic
CCAAGATCTTGCTAAACAGA+AGG 0.606505 6_4:-28056816 Msa0984230:intron
AAGAAGAGGCTAGCCACCAG+TGG 0.614610 6_4:-28056908 Msa0984230:CDS
GTGTAATCAAAGATTGTGGT+TGG 0.615544 6_4:+28058819 None:intergenic
TGAAAAGAGCAAGGCCAACA+AGG 0.620440 6_4:-28058416 Msa0984230:intron
GATTTGGAACTTGAATGTGA+AGG 0.620793 6_4:-28056670 Msa0984230:CDS
GGCAACCAGTGAAATTCTCA+GGG 0.626628 6_4:+28056837 None:intergenic
TAGAAGAGTACCAAAAGGAG+AGG 0.628978 6_4:+28056456 None:intergenic
AAGGGTGTAATCAAAGATTG+TGG 0.631735 6_4:+28058815 None:intergenic
CTAGTAATCCACAATACACA+TGG 0.633671 6_4:-28058716 Msa0984230:exon
CTTCTAGAGTCTTAACTGTG+TGG 0.634201 6_4:-28056439 Msa0984230:three_prime_UTR
CAAAGATTGTGGTTGGCGTG+TGG 0.640195 6_4:+28058826 None:intergenic
TGAATACCTTGAAAAGAGCA+AGG 0.648345 6_4:-28058425 Msa0984230:CDS
ATTTCAAAGAGAACAACACT+AGG 0.650345 6_4:+28056580 None:intergenic
GGAAAGGACAAATACAAGTG+TGG 0.658819 6_4:-28056649 Msa0984230:CDS
TGATGTGTATCAGAGTCCAA+AGG 0.665859 6_4:+28058756 None:intergenic
ATTGGAGGCTGAAACAGCAG+TGG 0.683074 6_4:+28058474 None:intergenic
AGCTTGATACCTGAAACCCC+TGG 0.689347 6_4:+28058601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACATAAATTTTTAAGTTT+GGG + chr6_4:28057116-28057135 None:intergenic 10.0%
!!! AAAACATAAATTTTTAAGTT+TGG + chr6_4:28057117-28057136 None:intergenic 10.0%
!!! AAAATATAAATTTTCAAGTT+CGG - chr6_4:28057555-28057574 Msa0984230:intron 10.0%
!! TAAAAAAAAATATTTACATG+GGG + chr6_4:28057837-28057856 None:intergenic 10.0%
!!! TCAAAACAATTTTTTTTTTA+CGG + chr6_4:28057867-28057886 None:intergenic 10.0%
!! AATCAAAAAAAAATATTTAC+AGG - chr6_4:28058001-28058020 Msa0984230:intron 10.0%
!! ATCAAAAAAAAATATTTACA+GGG - chr6_4:28058002-28058021 Msa0984230:intron 10.0%
!! TAAAAATTAAGAAAATTCAA+GGG + chr6_4:28058074-28058093 None:intergenic 10.0%
!! GTTATAAAAATGTTTAAATT+AGG - chr6_4:28058639-28058658 Msa0984230:CDS 10.0%
!!! AATTTTATTTTATTGTGAAA+TGG + chr6_4:28058727-28058746 None:intergenic 10.0%
!! TTCTTATTATAGGATAAAAT+TGG + chr6_4:28056782-28056801 None:intergenic 15.0%
!!! AACATAAATTTTTAAGTTTG+GGG + chr6_4:28057115-28057134 None:intergenic 15.0%
!! TATTAAAGACAAACAATTAA+CGG - chr6_4:28057160-28057179 Msa0984230:intron 15.0%
!! TTTAAATAAGTCATAAGTTA+TGG - chr6_4:28057395-28057414 Msa0984230:intron 15.0%
!!! AAATATAAATTTTCAAGTTC+GGG - chr6_4:28057556-28057575 Msa0984230:intron 15.0%
!!! AAAACAATTTTTTTTTTACG+GGG + chr6_4:28057865-28057884 None:intergenic 15.0%
!!! CAAAACAATTTTTTTTTTAC+GGG + chr6_4:28057866-28057885 None:intergenic 15.0%
!!! ATCAAAACAAAAAATTTTAC+CGG - chr6_4:28057973-28057992 Msa0984230:intron 15.0%
!! TCAAAAAAAAATATTTACAG+GGG - chr6_4:28058003-28058022 Msa0984230:intron 15.0%
!! CTAAAAATTAAGAAAATTCA+AGG + chr6_4:28058075-28058094 None:intergenic 15.0%
!! AAAAATATGGTATATTATCA+AGG + chr6_4:28058581-28058600 None:intergenic 15.0%
!!! GACTTAATTTTTATTTCCTT+TGG - chr6_4:28056350-28056369 Msa0984230:three_prime_UTR 20.0%
!!! ATTTAAAAAAAGTACCTTGT+TGG + chr6_4:28056723-28056742 None:intergenic 20.0%
!! AAAAAAATAGCTTCTAACAA+GGG + chr6_4:28056753-28056772 None:intergenic 20.0%
!! AAAAAAAATAGCTTCTAACA+AGG + chr6_4:28056754-28056773 None:intergenic 20.0%
!!! ATAGCAGATTTTCTTATTAT+AGG + chr6_4:28056792-28056811 None:intergenic 20.0%
!! CATCCTTAATCAATTTATTA+TGG - chr6_4:28056902-28056921 Msa0984230:CDS 20.0%
!! ACTCCATAATAAATTGATTA+AGG + chr6_4:28056908-28056927 None:intergenic 20.0%
!! CAATTTATTATGGAGTAAAT+AGG - chr6_4:28056912-28056931 Msa0984230:CDS 20.0%
!!! ACATAAATTTTTAAGTTTGG+GGG + chr6_4:28057114-28057133 None:intergenic 20.0%
!!! TAATTCTGCATTATTTTTAG+AGG + chr6_4:28057222-28057241 None:intergenic 20.0%
!!! TTTGTTTTTGTTATGTCATT+TGG + chr6_4:28057433-28057452 None:intergenic 20.0%
!!! CTTTAATATCTTTTAAGCTA+AGG - chr6_4:28057523-28057542 Msa0984230:intron 20.0%
!!! AATATAAATTTTCAAGTTCG+GGG - chr6_4:28057557-28057576 Msa0984230:intron 20.0%
!! CACAAAATAAATGAGTAAAT+AGG + chr6_4:28057731-28057750 None:intergenic 20.0%
!!! TTACTCATTTATTTTGTGTA+TGG - chr6_4:28057733-28057752 Msa0984230:intron 20.0%
!!! TAGCCTTTTATATTGAATTT+TGG - chr6_4:28057768-28057787 Msa0984230:intron 20.0%
!!! AGCCTTTTATATTGAATTTT+GGG - chr6_4:28057769-28057788 Msa0984230:intron 20.0%
!! AACCCAAAATTCAATATAAA+AGG + chr6_4:28057774-28057793 None:intergenic 20.0%
!!! ATATTGAATTTTGGGTTAAT+AGG - chr6_4:28057777-28057796 Msa0984230:intron 20.0%
!!! AAACAATTTTTTTTTTACGG+GGG + chr6_4:28057864-28057883 None:intergenic 20.0%
!!! AAATAAAATCGGTTTTTGTT+TGG + chr6_4:28057906-28057925 None:intergenic 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG - chr6_4:28057935-28057954 Msa0984230:intron 20.0%
!!! TCAAAACAAAAAATTTTACC+GGG - chr6_4:28057974-28057993 Msa0984230:intron 20.0%
!! CGAACAAATAATATTATCAA+GGG + chr6_4:28058100-28058119 None:intergenic 20.0%
!!! CCTTGATAATATTATTTGTT+CGG - chr6_4:28058098-28058117 Msa0984230:intron 20.0%
!! AAAAATAATAAGATGCACTA+AGG - chr6_4:28058138-28058157 Msa0984230:intron 20.0%
!!! TTATTTTGACTGTATGTATA+TGG - chr6_4:28058174-28058193 Msa0984230:intron 20.0%
!! GAAAAAATAGCATTAGAAAA+TGG + chr6_4:28058395-28058414 None:intergenic 20.0%
!! AACAAAAATGCAGAAAAATA+TGG + chr6_4:28058594-28058613 None:intergenic 20.0%
!! GTATAACTATATTATGGAAT+TGG + chr6_4:28058778-28058797 None:intergenic 20.0%
!!! CTTGTTGTATAACTATATTA+TGG + chr6_4:28058784-28058803 None:intergenic 20.0%
! AAATTGATTAAGGATGTGAT+TGG + chr6_4:28056898-28056917 None:intergenic 25.0%
!! TTGACGAAACTTACAATTTT+GGG + chr6_4:28056946-28056965 None:intergenic 25.0%
!! ATTGACGAAACTTACAATTT+TGG + chr6_4:28057694-28057713 None:intergenic 25.0%
!!! TTGACGTTTTGTTAATTTCA+GGG + chr6_4:28056975-28056994 None:intergenic 25.0%
!!! ATTGACGTTTTGTTAATTTC+AGG + chr6_4:28056976-28056995 None:intergenic 25.0%
! TGACTAACAGAAAAATTTGA+CGG + chr6_4:28057040-28057059 None:intergenic 25.0%
!!! CTTTAATATCTTTTGAGTCA+AGG + chr6_4:28057148-28057167 None:intergenic 25.0%
! ACGGTTATCTTTACTATTTA+AGG - chr6_4:28057179-28057198 Msa0984230:intron 25.0%
! GTTAGAATTAATTGTTCATG+AGG - chr6_4:28057327-28057346 Msa0984230:intron 25.0%
! AATTAATTGTTCATGAGGAA+TGG - chr6_4:28057332-28057351 Msa0984230:intron 25.0%
! ATTAATTGTTCATGAGGAAT+GGG - chr6_4:28057333-28057352 Msa0984230:intron 25.0%
! TGACTCTTTCATTCTTAAAT+GGG + chr6_4:28057469-28057488 None:intergenic 25.0%
! ATGACTCTTTCATTCTTAAA+TGG + chr6_4:28057470-28057489 None:intergenic 25.0%
!!! ATATAAATTTTCAAGTTCGG+GGG - chr6_4:28057558-28057577 Msa0984230:intron 25.0%
! TGACTAACTGAAAAATTTGA+CGG - chr6_4:28057601-28057620 Msa0984230:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr6_4:28057637-28057656 Msa0984230:intron 25.0%
!!! ACGTTTTATTAATTTCAGAG+AGG - chr6_4:28057669-28057688 Msa0984230:intron 25.0%
!! CAAAACAAAAAATTTTACCG+GGG - chr6_4:28057975-28057994 Msa0984230:intron 25.0%
!! AAAACAAAAAATTTTACCGG+GGG - chr6_4:28057976-28057995 Msa0984230:intron 25.0%
!!! ATTTTTTTTTGATTTACCCC+CGG + chr6_4:28057995-28058014 None:intergenic 25.0%
! AAGAAAATTCAAGGGTTAAT+AGG + chr6_4:28058066-28058085 None:intergenic 25.0%
! CCGAACAAATAATATTATCA+AGG + chr6_4:28058101-28058120 None:intergenic 25.0%
! AGTGAAACAAAAGATGTTTA+TGG + chr6_4:28058343-28058362 None:intergenic 25.0%
! AATGGTAAATAGGAAAACTT+TGG + chr6_4:28058377-28058396 None:intergenic 25.0%
! AGCATTAGAAAATGGTAAAT+AGG + chr6_4:28058387-28058406 None:intergenic 25.0%
! TACTTTCTGCATAAATGAAA+AGG + chr6_4:28058417-28058436 None:intergenic 25.0%
!!! TTCTGCATTTTTGTTGTTAT+TGG - chr6_4:28058599-28058618 Msa0984230:CDS 25.0%
!!! AACTTATTTGTTGCTTTACT+TGG - chr6_4:28058747-28058766 Msa0984230:five_prime_UTR 25.0%
!! AGATTGCATTGATTTCCTAT+TGG + chr6_4:28056268-28056287 None:intergenic 30.0%
TTAAGTCAACTTATGTTGCA+AGG + chr6_4:28056337-28056356 None:intergenic 30.0%
GATAGCAAATCAAGTTATAG+CGG + chr6_4:28056865-28056884 None:intergenic 30.0%
!! GCTATAACTTGATTTGCTAT+CGG - chr6_4:28056864-28056883 Msa0984230:CDS 30.0%
! TGACGAAACTTACAATTTTG+GGG + chr6_4:28056945-28056964 None:intergenic 30.0%
!! TGACGTTTTGTTAATTTCAG+GGG + chr6_4:28056974-28056993 None:intergenic 30.0%
ATTAACGTTGTGCAATTTCA+CGG + chr6_4:28057004-28057023 None:intergenic 30.0%
TAACAGAAAAATTTGACGGA+GGG + chr6_4:28057036-28057055 None:intergenic 30.0%
!!! TATAAATTTTCAAGTTCGGG+GGG - chr6_4:28057559-28057578 Msa0984230:intron 30.0%
TAACTGAAAAATTTGACGGA+GGG - chr6_4:28057605-28057624 Msa0984230:intron 30.0%
GATTAACGTTATGCAATTTC+AGG - chr6_4:28057636-28057655 Msa0984230:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr6_4:28057638-28057657 Msa0984230:intron 30.0%
TGACGAAACTTACAATTTCA+TGG - chr6_4:28057696-28057715 Msa0984230:intron 30.0%
GACGAAACTTACAATTTCAT+GGG - chr6_4:28057697-28057716 Msa0984230:intron 30.0%
ACGAAACTTACAATTTCATG+GGG - chr6_4:28057698-28057717 Msa0984230:intron 30.0%
CGGAAATGACTTATATTACA+GGG + chr6_4:28057809-28057828 None:intergenic 30.0%
CCTGTAATATAAGTCATTTC+CGG - chr6_4:28057807-28057826 Msa0984230:intron 30.0%
AATATTTACATGGGGAAAAC+CGG + chr6_4:28057829-28057848 None:intergenic 30.0%
AATATTTACAGGGGAAAAAC+CGG - chr6_4:28058012-28058031 Msa0984230:intron 30.0%
! GTTTTTACCTCCTGTAATAT+AGG + chr6_4:28058044-28058063 None:intergenic 30.0%
TTGTTCGGAGTATATTTGAA+AGG - chr6_4:28058113-28058132 Msa0984230:intron 30.0%
ACCATTCATTACAGAAGATT+TGG - chr6_4:28058436-28058455 Msa0984230:CDS 30.0%
TCCAAATCTTCTGTAATGAA+TGG + chr6_4:28058440-28058459 None:intergenic 30.0%
!! GTTCTAATGTTTTCTGGAAA+TGG - chr6_4:28058495-28058514 Msa0984230:CDS 30.0%
ATTTCAAAGAGAACAACACT+AGG + chr6_4:28058545-28058564 None:intergenic 30.0%
AAGAACATTGTTGTGAATCA+CGG - chr6_4:28058801-28058820 Msa0984230:five_prime_UTR 30.0%
GTGTAATCAAAGATTGTGGT+TGG + chr6_4:28056306-28056325 None:intergenic 35.0%
! AAGGGTGTAATCAAAGATTG+TGG + chr6_4:28056310-28056329 None:intergenic 35.0%
CTTATGTTGCAAGGAACAAA+GGG + chr6_4:28056328-28056347 None:intergenic 35.0%
ACTTATGTTGCAAGGAACAA+AGG + chr6_4:28056329-28056348 None:intergenic 35.0%
CTAGTAATCCACAATACACA+TGG - chr6_4:28056406-28056425 Msa0984230:three_prime_UTR 35.0%
TATCAAGCTACCATTGATCA+AGG - chr6_4:28056535-28056554 Msa0984230:three_prime_UTR 35.0%
ATCACTTGCTCTTGATTCTT+TGG + chr6_4:28056585-28056604 None:intergenic 35.0%
AAAGAATCAAGAGCAAGTGA+TGG - chr6_4:28056584-28056603 Msa0984230:three_prime_UTR 35.0%
GAGAAATGCTCTTGCTTTAT+TGG - chr6_4:28056610-28056629 Msa0984230:exon 35.0%
TGAATACCTTGAAAAGAGCA+AGG - chr6_4:28056697-28056716 Msa0984230:intron 35.0%
! GACGAAACTTACAATTTTGG+GGG + chr6_4:28056944-28056963 None:intergenic 35.0%
!! GACGTTTTGTTAATTTCAGG+GGG + chr6_4:28056973-28056992 None:intergenic 35.0%
AACAGAAAAATTTGACGGAG+GGG + chr6_4:28057035-28057054 None:intergenic 35.0%
CTAACAGAAAAATTTGACGG+AGG + chr6_4:28057037-28057056 None:intergenic 35.0%
! TGGCTTACTTTGTTGTGAAT+TGG - chr6_4:28057362-28057381 Msa0984230:intron 35.0%
CTAACTGAAAAATTTGACGG+AGG - chr6_4:28057604-28057623 Msa0984230:intron 35.0%
AACTGAAAAATTTGACGGAG+GGG - chr6_4:28057606-28057625 Msa0984230:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr6_4:28057639-28057658 Msa0984230:intron 35.0%
CGAAACTTACAATTTCATGG+GGG - chr6_4:28057699-28057718 Msa0984230:intron 35.0%
CCGGAAATGACTTATATTAC+AGG + chr6_4:28057810-28057829 None:intergenic 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG - chr6_4:28057880-28057899 Msa0984230:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG + chr6_4:28057947-28057966 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG + chr6_4:28057946-28057965 None:intergenic 35.0%
!! GGTTTTTGTTTGGCCTATTA+GGG + chr6_4:28057896-28057915 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG - chr6_4:28057944-28057963 Msa0984230:intron 35.0%
!! CGTTTTTGTTTGGCCTATTA+GGG - chr6_4:28057945-28057964 Msa0984230:intron 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr6_4:28057946-28057965 Msa0984230:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr6_4:28057947-28057966 Msa0984230:intron 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG + chr6_4:28057880-28057899 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG + chr6_4:28058034-28058053 None:intergenic 35.0%
GAAATGACCTATATTACAGG+AGG - chr6_4:28058034-28058053 Msa0984230:intron 35.0%
TGACTGTATGTATATGGTGT+AGG - chr6_4:28058180-28058199 Msa0984230:intron 35.0%
AGGAATTGAATGACAAGAAG+AGG - chr6_4:28058200-28058219 Msa0984230:intron 35.0%
AGAGCATATACAGTGCAATT+TGG - chr6_4:28058250-28058269 Msa0984230:intron 35.0%
! GATTTGGAACTTGAATGTGA+AGG - chr6_4:28058452-28058471 Msa0984230:CDS 35.0%
!!! AGTGTGGTTCTAATGTTTTC+TGG - chr6_4:28058489-28058508 Msa0984230:CDS 35.0%
AGAACATTGTTGTGAATCAC+GGG - chr6_4:28058802-28058821 Msa0984230:five_prime_UTR 35.0%
GAGTTCGAAGATAACTTGAA+AGG - chr6_4:28058831-28058850 Msa0984230:five_prime_UTR 35.0%
GATAACTTGAAAGGAGATGT+AGG - chr6_4:28058840-28058859 Msa0984230:five_prime_UTR 35.0%
TGATGTGTATCAGAGTCCAA+AGG + chr6_4:28056369-28056388 None:intergenic 40.0%
! ACTTGTTGAGCCTTGATCAA+TGG + chr6_4:28056548-28056567 None:intergenic 40.0%
! AATCAAGAGCAAGTGATGGA+AGG - chr6_4:28056588-28056607 Msa0984230:three_prime_UTR 40.0%
TGAAACAGCAGTGGTGAAAA+GGG + chr6_4:28056642-28056661 None:intergenic 40.0%
TTCATCAATAACGCCAGCAT+TGG + chr6_4:28056681-28056700 None:intergenic 40.0%
ACAGAAAAATTTGACGGAGG+GGG + chr6_4:28057034-28057053 None:intergenic 40.0%
ACATAAGTGCAAAACGTCAG+GGG + chr6_4:28057083-28057102 None:intergenic 40.0%
CACATAAGTGCAAAACGTCA+GGG + chr6_4:28057084-28057103 None:intergenic 40.0%
ACTGAAAAATTTGACGGAGG+GGG - chr6_4:28057607-28057626 Msa0984230:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG - chr6_4:28057640-28057659 Msa0984230:intron 40.0%
!! CGGTTTTTGTTTGGCCTATT+AGG + chr6_4:28057897-28057916 None:intergenic 40.0%
CCGGAAATGACCTATATTAC+AGG - chr6_4:28058031-28058050 Msa0984230:intron 40.0%
AAGTTCCCTGAGAATTTCAC+TGG - chr6_4:28058280-28058299 Msa0984230:intron 40.0%
CCTTCTGTTTAGCAAGATCT+TGG + chr6_4:28058309-28058328 None:intergenic 40.0%
CCAAGATCTTGCTAAACAGA+AGG - chr6_4:28058306-28058325 Msa0984230:intron 40.0%
GGAACTTGAATGTGAAGGAA+AGG - chr6_4:28058457-28058476 Msa0984230:CDS 40.0%
GGAAAGGACAAATACAAGTG+TGG - chr6_4:28058473-28058492 Msa0984230:CDS 40.0%
!! TAGAAGAGTACCAAAAGGAG+AGG + chr6_4:28058669-28058688 None:intergenic 40.0%
!! GACTCTAGAAGAGTACCAAA+AGG + chr6_4:28058674-28058693 None:intergenic 40.0%
!! CTTCTAGAGTCTTAACTGTG+TGG - chr6_4:28058683-28058702 Msa0984230:CDS 40.0%
CATTGCAGCCATGTGTATTG+TGG + chr6_4:28056417-28056436 None:intergenic 45.0%
GCTTGTAGCTATGCCATATC+TGG - chr6_4:28056452-28056471 Msa0984230:three_prime_UTR 45.0%
ATTGAGCTCAGCACCAGATA+TGG + chr6_4:28056468-28056487 None:intergenic 45.0%
! GCTCTTGATTCTTTGGCTTC+AGG + chr6_4:28056578-28056597 None:intergenic 45.0%
CTGAAACAGCAGTGGTGAAA+AGG + chr6_4:28056643-28056662 None:intergenic 45.0%
!! AGCATTGGCAGAAGAATTGG+AGG + chr6_4:28056666-28056685 None:intergenic 45.0%
TCCAATTCTTCTGCCAATGC+TGG - chr6_4:28056665-28056684 Msa0984230:CDS 45.0%
!!! TGTTGGCCTTGCTCTTTTCA+AGG + chr6_4:28056706-28056725 None:intergenic 45.0%
TGAAAAGAGCAAGGCCAACA+AGG - chr6_4:28056706-28056725 Msa0984230:intron 45.0%
AACGTTGTGCAATTTCACGG+AGG + chr6_4:28057001-28057020 None:intergenic 45.0%
CATAAGTGCAAAACGTCAGG+GGG + chr6_4:28057082-28057101 None:intergenic 45.0%
GCACATAAGTGCAAAACGTC+AGG + chr6_4:28057085-28057104 None:intergenic 45.0%
! TCTTGCAAAGTTTGCTCCAC+TGG + chr6_4:28058233-28058252 None:intergenic 45.0%
GGCAACCAGTGAAATTCTCA+GGG + chr6_4:28058288-28058307 None:intergenic 45.0%
TGGCAACCAGTGAAATTCTC+AGG + chr6_4:28058289-28058308 None:intergenic 45.0%
! ATTAGGCATGCCTCTCCTTT+TGG - chr6_4:28058656-28058675 Msa0984230:CDS 45.0%
!! ATAAAAAAAAATATTTACAT+GGG + chr6_4:28057838-28057857 None:intergenic 5.0%
!! AATAAAAAAAAATATTTACA+TGG + chr6_4:28057839-28057858 None:intergenic 5.0%
!! TTGAAAAAATAAAATAAAAT+CGG + chr6_4:28057917-28057936 None:intergenic 5.0%
TTGTGGTTGGCGTGTGGATA+AGG + chr6_4:28056293-28056312 None:intergenic 50.0%
CAAAGATTGTGGTTGGCGTG+TGG + chr6_4:28056299-28056318 None:intergenic 50.0%
AGCTTGATACCTGAAACCCC+TGG + chr6_4:28056524-28056543 None:intergenic 50.0%
ATTGGAGGCTGAAACAGCAG+TGG + chr6_4:28056651-28056670 None:intergenic 50.0%
!! GCCAGCATTGGCAGAAGAAT+TGG + chr6_4:28056669-28056688 None:intergenic 50.0%
TCATGAGGAATGGGTGTCTC+TGG - chr6_4:28057342-28057361 Msa0984230:intron 50.0%
! TGCAAAGTTTGCTCCACTGG+TGG + chr6_4:28058230-28058249 None:intergenic 50.0%
! AAGAAGAGGCTAGCCACCAG+TGG - chr6_4:28058214-28058233 Msa0984230:intron 55.0%
TGCCCTCTGCTGCATCACCA+GGG - chr6_4:28056504-28056523 Msa0984230:three_prime_UTR 60.0%
! ACCCCTGGTGATGCAGCAGA+GGG + chr6_4:28056509-28056528 None:intergenic 60.0%
! AACCCCTGGTGATGCAGCAG+AGG + chr6_4:28056510-28056529 None:intergenic 60.0%
GCTGCATCACCAGGGGTTTC+AGG - chr6_4:28056512-28056531 Msa0984230:three_prime_UTR 60.0%
GTGCCCTCTGCTGCATCACC+AGG - chr6_4:28056503-28056522 Msa0984230:three_prime_UTR 65.0%
GCCCTCTGCTGCATCACCAG+GGG - chr6_4:28056505-28056524 Msa0984230:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 28056265 28058879 28056265 ID=Msa0984230;Name=Msa0984230
chr6_4 mRNA 28056265 28058879 28056265 ID=Msa0984230-mRNA-1;Parent=Msa0984230;Name=Msa0984230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=160|1|1|1|1|1|3|359|172
chr6_4 exon 28056265 28056713 28056265 ID=Msa0984230-mRNA-1:exon:7928;Parent=Msa0984230-mRNA-1
chr6_4 exon 28056817 28056942 28056817 ID=Msa0984230-mRNA-1:exon:7927;Parent=Msa0984230-mRNA-1
chr6_4 exon 28058417 28058879 28058417 ID=Msa0984230-mRNA-1:exon:7926;Parent=Msa0984230-mRNA-1
chr6_4 five_prime_UTR 28058720 28058879 28058720 ID=Msa0984230-mRNA-1:five_prime_utr;Parent=Msa0984230-mRNA-1
chr6_4 CDS 28058417 28058719 28058417 ID=Msa0984230-mRNA-1:cds;Parent=Msa0984230-mRNA-1
chr6_4 CDS 28056817 28056942 28056817 ID=Msa0984230-mRNA-1:cds;Parent=Msa0984230-mRNA-1
chr6_4 CDS 28056624 28056713 28056624 ID=Msa0984230-mRNA-1:cds;Parent=Msa0984230-mRNA-1
chr6_4 three_prime_UTR 28056265 28056623 28056265 ID=Msa0984230-mRNA-1:three_prime_utr;Parent=Msa0984230-mRNA-1
Gene Sequence

>Msa0984230

ATGGCTGCAATGAACTCAAGTGTATTAGCTTGTAGCTATGCCATATCTGGTGCTGAGCTCAATGCAAAGCTCATTTCAGTGCCCTCTGCTGCATCACCAGGGGTTTCAGGTATCAAGCTACCATTGATCAAGGCTCAACAAGTGAGAATTCCTGAAGCCAAAGAATCAAGAGCAAGTGATGGAAGGAGAAATGCTCTTGCTTTATTGGCTGCTACCCTTTTCACCACTGCTGTTTCAGCCTCCAATTCTTCTGCCAATGCTGGCGTTATTGATGAATACCTTGAAAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGCTAGCCACCAGTGGAGCAAACTTTGCAAGAGCATATACAGTGCAATTTGGTACTTGCAAGTTCCCTGAGAATTTCACTGGTTGCCAAGATCTTGCTAAACAGAAGAAAGTACCATTCATTACAGAAGATTTGGAACTTGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA

Protein sequence

>Msa0984230

MAAMNSSVLACSYAISGAELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESRASDGRRNALALLAATLFTTAVSASNSSANAGVIDEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW*