AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0667670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667670 MtrunA17_Chr4g0006181 99.308 289 2 0 1 289 59 347 0.0 590
Msa0667670 MtrunA17_Chr3g0113311 70.566 265 74 1 12 272 11 275 6.70e-134 380
Msa0667670 MtrunA17_Chr6g0462031 40.000 230 90 5 57 282 49 234 1.80e-44 151
Msa0667670 MtrunA17_Chr2g0301081 34.615 260 92 7 53 288 61 266 1.12e-38 137
Msa0667670 MtrunA17_Chr8g0345631 33.205 259 95 5 53 287 62 266 7.23e-35 127
Msa0667670 MtrunA17_Chr3g0133901 30.795 302 131 5 13 289 17 265 9.39e-35 126
Msa0667670 MtrunA17_Chr6g0476641 33.452 281 116 10 35 289 47 282 1.42e-34 126
Msa0667670 MtrunA17_Chr3g0092091 30.671 313 132 8 1 289 1 252 2.10e-31 117
Msa0667670 MtrunA17_Chr6g0453181 33.446 296 136 10 3 281 2 253 5.51e-31 116
Msa0667670 MtrunA17_Chr4g0051941 34.228 298 132 11 3 281 2 254 1.90e-30 115
Msa0667670 MtrunA17_Chr6g0453141 33.670 297 134 11 3 281 2 253 1.02e-29 113
Msa0667670 MtrunA17_Chr6g0453151 33.670 297 134 11 3 281 69 320 2.23e-29 114
Msa0667670 MtrunA17_Chr6g0453161 32.770 296 138 10 3 281 269 520 2.71e-29 116
Msa0667670 MtrunA17_Chr6g0453161 43.293 164 78 7 132 281 93 255 3.78e-27 110
Msa0667670 MtrunA17_Chr2g0318521 35.622 233 92 7 61 278 60 249 3.25e-29 112
Msa0667670 MtrunA17_Chr1g0157481 31.111 315 139 12 5 288 62 329 9.31e-29 112
Msa0667670 MtrunA17_Chr2g0279001 31.818 308 115 9 4 268 2 257 9.52e-29 110
Msa0667670 MtrunA17_Chr5g0447531 32.836 268 109 11 35 278 30 250 1.56e-26 104
Msa0667670 MtrunA17_Chr5g0448421 29.710 276 122 7 39 286 43 274 1.46e-25 102
Msa0667670 MtrunA17_Chr5g0448411 30.000 280 121 7 35 286 40 272 2.08e-25 102
Msa0667670 MtrunA17_Chr6g0464511 46.018 113 54 4 175 281 89 200 5.19e-20 86.3
Msa0667670 MtrunA17_Chr6g0453171 56.716 67 28 1 215 281 21 86 1.64e-18 79.0
Msa0667670 MtrunA17_Chr2g0296081 50.000 72 31 2 216 287 36 102 4.59e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667670 AT3G08940.2 87.004 277 33 2 14 289 13 287 2.49e-178 493
Msa0667670 AT5G01530.1 87.726 277 33 1 14 289 14 290 3.49e-174 483
Msa0667670 AT2G40100.1 70.189 265 74 2 12 272 10 273 1.30e-132 377
Msa0667670 AT3G08940.1 77.326 172 36 2 15 185 14 183 4.75e-90 267
Msa0667670 AT2G40100.2 64.024 164 55 1 12 171 10 173 3.32e-71 218
Msa0667670 AT3G54890.1 41.453 234 87 6 57 285 48 236 5.05e-47 158
Msa0667670 AT1G19150.1 33.846 260 94 6 53 288 64 269 5.50e-35 127
Msa0667670 AT4G10340.1 35.573 253 102 8 53 289 66 273 9.23e-35 127
Msa0667670 AT3G61470.1 33.977 259 93 6 53 287 51 255 1.32e-34 126
Msa0667670 AT1G45474.2 32.830 265 99 5 51 289 43 254 2.13e-34 125
Msa0667670 AT1G45474.1 32.830 265 99 5 51 289 43 254 2.13e-34 125
Msa0667670 AT2G34420.1 34.333 300 128 11 3 281 2 253 8.75e-33 121
Msa0667670 AT1G29930.1 35.099 302 125 13 3 281 2 255 1.78e-32 120
Msa0667670 AT1G29920.1 35.099 302 125 13 3 281 2 255 3.71e-32 120
Msa0667670 AT1G29910.1 35.099 302 125 13 3 281 2 255 3.71e-32 120
Msa0667670 AT1G76570.1 34.304 309 126 12 5 283 61 322 4.21e-32 121
Msa0667670 AT3G47470.1 30.645 310 129 8 4 287 2 251 7.65e-32 119
Msa0667670 AT3G54890.4 37.629 194 72 5 57 246 48 196 1.53e-30 114
Msa0667670 AT5G54270.1 33.696 276 108 8 35 278 18 250 1.99e-30 115
Msa0667670 AT2G34430.1 44.785 163 74 6 134 281 93 254 6.18e-30 114
Msa0667670 AT1G15820.1 33.704 270 75 9 40 268 48 254 4.47e-29 111
Msa0667670 AT1G61520.3 30.435 276 119 7 39 286 40 270 6.34e-28 108
Msa0667670 AT1G61520.1 30.435 276 119 7 39 286 40 270 6.34e-28 108
Msa0667670 AT2G05070.1 33.108 296 125 13 7 278 4 250 2.38e-27 107
Msa0667670 AT2G05100.1 34.363 259 96 11 47 278 39 250 1.84e-26 105
Msa0667670 AT3G27690.2 33.110 299 130 13 3 278 32 283 3.14e-26 105
Msa0667670 AT3G27690.1 33.220 295 127 13 7 278 4 251 7.83e-26 103
Msa0667670 AT1G61520.2 29.388 245 102 6 70 286 14 215 2.01e-20 87.8
Msa0667670 AT2G05100.2 32.927 246 91 11 47 265 39 237 2.41e-19 86.7
Msa0667670 AT5G28450.1 45.783 83 44 1 206 287 89 171 6.29e-14 68.9

Find 119 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTTCGACCTAATGTTTA+AGG 0.157400 4_4:+8253597 None:intergenic
GAGTTTCGCGCGCGTCTTAT+TGG 0.198822 4_4:-8253846 Msa0667670:three_prime_UTR
CTTGATCTCGATGGTTTCTT+TGG 0.211241 4_4:+8256217 None:intergenic
CTTACTGTTGAATGGCTTAC+TGG 0.215175 4_4:-8255657 Msa0667670:CDS
AACTTGTTACCCAAACAAAA+TGG 0.225218 4_4:-8253621 Msa0667670:three_prime_UTR
CGACTCGCTTGATCAGAATT+TGG 0.240362 4_4:-8255838 Msa0667670:CDS
TGGATCGAAGTTCTAGTAAT+TGG 0.266022 4_4:-8254372 Msa0667670:CDS
TGGTGATGAATTGGTGATTA+TGG 0.278938 4_4:+8256460 None:intergenic
AGTTTCGCGCGCGTCTTATT+GGG 0.280298 4_4:-8253845 Msa0667670:three_prime_UTR
GGAAGTTTGGTCGGAGATTA+CGG 0.284629 4_4:-8255912 Msa0667670:CDS
GGCTGCAGCGGTGGCGGTTG+CGG 0.291908 4_4:+8256333 None:intergenic
CTATATATATAAATGCTATT+TGG 0.296999 4_4:-8254045 Msa0667670:three_prime_UTR
GGATTCGATCCATTCGGTTT+GGG 0.303944 4_4:-8255891 Msa0667670:CDS
CAAAACAAGTTAGAACATTT+CGG 0.309667 4_4:+8253812 None:intergenic
AAGACGCGCGCGAAACTCAT+AGG 0.326003 4_4:+8253851 None:intergenic
TGGCGGTTGCGGCGGCCATT+TGG 0.332788 4_4:+8256344 None:intergenic
GTGAAATTCCTAATGTGAAT+TGG 0.346762 4_4:-8253982 Msa0667670:three_prime_UTR
ACCTCACTGTAAGGCTGAAA+TGG 0.350160 4_4:+8255753 None:intergenic
CTTGCTATGGTTGCTTTCCT+TGG 0.358398 4_4:-8254207 Msa0667670:CDS
GTAAAGGACCACTTAACAAT+TGG 0.364076 4_4:-8254158 Msa0667670:CDS
CACTCCGGTGACTTTGCTCC+GGG 0.367189 4_4:+8255942 None:intergenic
GGCTTGGATCCTACCCGAAT+TGG 0.370873 4_4:+8256270 None:intergenic
AAACATTAGGTCGAAGTGTT+GGG 0.371629 4_4:-8253593 Msa0667670:three_prime_UTR
TTCCGAAGCCAAATCGGGCT+TGG 0.372431 4_4:+8256254 None:intergenic
TTTCAGGTTGAGCTAGTAGA+AGG 0.373969 4_4:-8254444 Msa0667670:intron
CAAAATGGGCCTTAAACATT+AGG 0.374408 4_4:-8253606 Msa0667670:three_prime_UTR
GTGAGCACCAGAGTAGAAAA+TGG 0.375477 4_4:+8256378 None:intergenic
TCTTCTTTCCGAAGCCAAAT+CGG 0.378319 4_4:+8256248 None:intergenic
TTTGCTCCGGGGTACCATAA+TGG 0.383572 4_4:+8255954 None:intergenic
TAACTGCTCCAATTCACATT+AGG 0.383713 4_4:+8253974 None:intergenic
GTTCTTGATTAACTCATGTA+TGG 0.384423 4_4:-8254076 Msa0667670:three_prime_UTR
TGAGGGCAATGAGGAACATT+AGG 0.388001 4_4:-8253890 Msa0667670:three_prime_UTR
GTGAGTTGATTCATGGTAGA+TGG 0.391291 4_4:-8255704 Msa0667670:CDS
CGGATTCGATCCATTCGGTT+TGG 0.392702 4_4:-8255892 Msa0667670:CDS
GGTAGGATCCAAGCCCGATT+TGG 0.398525 4_4:-8256262 Msa0667670:CDS
AGGGAATGTGAGTTGATTCA+TGG 0.400554 4_4:-8255711 Msa0667670:CDS
TTGATGTGGTGGTGATGAAT+TGG 0.401399 4_4:+8256451 None:intergenic
CCGCGAAGTTCAATCCAATT+CGG 0.405011 4_4:-8256284 Msa0667670:CDS
AAAGAAAGCAACACTTCAAT+TGG 0.406102 4_4:-8254250 Msa0667670:CDS
TCTCAATCACAACACTAATC+TGG 0.407508 4_4:-8254392 Msa0667670:CDS
CTTCTTTCCGAAGCCAAATC+GGG 0.408293 4_4:+8256249 None:intergenic
CGCGAAGTTCAATCCAATTC+GGG 0.412313 4_4:-8256283 Msa0667670:CDS
TTGGTGCTCTTACTGTTGAA+TGG 0.414634 4_4:-8255665 Msa0667670:CDS
CATCAAGCTCAGCATTTCTC+TGG 0.414677 4_4:+8254337 None:intergenic
ATCCAAGCCCGATTTGGCTT+CGG 0.425991 4_4:-8256256 Msa0667670:CDS
GCTGTTCAAGCTGCTGCTAC+TGG 0.427306 4_4:-8254180 Msa0667670:CDS
GTAGAAGGATCAACATATCT+TGG 0.431470 4_4:-8254429 Msa0667670:CDS
CCACTCCGGTGACTTTGCTC+CGG 0.432695 4_4:+8255941 None:intergenic
TGGGCTATGCTTGCTACTCT+TGG 0.438475 4_4:-8255684 Msa0667670:CDS
CCGGAGATGTGATCGGAACT+AGG 0.444206 4_4:-8255803 Msa0667670:CDS
GGAGTGGCTAGACGGAAGTT+TGG 0.446982 4_4:-8255925 Msa0667670:CDS
CAAGCTGCTGCTACTGGTAA+AGG 0.448841 4_4:-8254174 Msa0667670:CDS
TATATAATCTGAACTACATA+AGG 0.451050 4_4:-8253756 Msa0667670:three_prime_UTR
ATTAGTGTTGTGATTGAGAA+TGG 0.460015 4_4:+8254396 None:intergenic
AAGGCGCGCAAGAATTCAAT+AGG 0.461474 4_4:-8253737 Msa0667670:three_prime_UTR
AATTTGGCGAAGAATCTTGC+CGG 0.462568 4_4:-8255822 Msa0667670:CDS
TTGACTAAGCATGAAATTTG+AGG 0.467015 4_4:-8253908 Msa0667670:three_prime_UTR
AATGTGAATTGGAGCAGTTA+AGG 0.470078 4_4:-8253971 Msa0667670:three_prime_UTR
CAGGTACTGATCGTCCATTA+TGG 0.471652 4_4:-8255968 Msa0667670:CDS
ATATAAATGCTATTTGGCAT+TGG 0.474581 4_4:-8254039 Msa0667670:three_prime_UTR
TGGATTGAACTTCGCGGAGG+CGG 0.476462 4_4:+8256290 None:intergenic
ACTTGTTACCCAAACAAAAT+GGG 0.477726 4_4:-8253620 Msa0667670:three_prime_UTR
GGAAAATTCTTTGACCCACT+TGG 0.485517 4_4:-8254291 Msa0667670:CDS
GGAAGAAAAGGTATCAATGA+TGG 0.486648 4_4:+8254104 None:intergenic
TGCAGCGGTGGCGGTTGCGG+CGG 0.492945 4_4:+8256336 None:intergenic
TAAACATTAGGTCGAAGTGT+TGG 0.493781 4_4:-8253594 Msa0667670:three_prime_UTR
TTCAATAGGATGAGAAAAGG+AGG 0.493891 4_4:-8253723 Msa0667670:three_prime_UTR
TGACTAAGCATGAAATTTGA+GGG 0.498032 4_4:-8253907 Msa0667670:three_prime_UTR
CAAGAACTAAGAGGAAGAAA+AGG 0.500205 4_4:+8254092 None:intergenic
GTTACATAATAATGTTAAGA+TGG 0.504422 4_4:+8253641 None:intergenic
TCAAATTGCAAATACTCAGC+TGG 0.506457 4_4:+8255864 None:intergenic
GGATTGAACTTCGCGGAGGC+GGG 0.511648 4_4:+8256291 None:intergenic
GATTCGATCCATTCGGTTTG+GGG 0.515733 4_4:-8255890 Msa0667670:CDS
TAGTGTTGTATTTGATGTGG+TGG 0.521205 4_4:+8256440 None:intergenic
CCTAGTTCCGATCACATCTC+CGG 0.525368 4_4:+8255803 None:intergenic
TAAAGGACCACTTAACAATT+GGG 0.525889 4_4:-8254157 Msa0667670:CDS
GGTGTTACATGGCAAGATGC+TGG 0.526008 4_4:-8255636 Msa0667670:CDS
TGAAGTGGCTGCAGCGGTGG+CGG 0.531682 4_4:+8256327 None:intergenic
TGAGTAGCCCAATTGTTAAG+TGG 0.534802 4_4:+8254150 None:intergenic
TCACATTAGCATAAACCAAA+TGG 0.536982 4_4:-8256359 Msa0667670:exon
TGAGTTAATCAAGAACTAAG+AGG 0.538848 4_4:+8254083 None:intergenic
AATGGCTTACTGGTGTTACA+TGG 0.542824 4_4:-8255647 Msa0667670:CDS
GAATTCAATAGGATGAGAAA+AGG 0.543421 4_4:-8253726 Msa0667670:three_prime_UTR
CAAACATGCTCGTCTTGCTA+TGG 0.544135 4_4:-8254220 Msa0667670:CDS
CCGAATTGGATTGAACTTCG+CGG 0.551574 4_4:+8256284 None:intergenic
AACATTAGGTCGAAGTGTTG+GGG 0.556714 4_4:-8253592 Msa0667670:three_prime_UTR
GTTGTGATTGAGAATGGAAG+TGG 0.559057 4_4:+8254402 None:intergenic
TGGCTAGACGGAAGTTTGGT+CGG 0.562317 4_4:-8255921 Msa0667670:CDS
GATTACGGATTCGATCCATT+CGG 0.562342 4_4:-8255897 Msa0667670:CDS
AGATGTGATCGGAACTAGGA+CGG 0.563578 4_4:-8255799 Msa0667670:CDS
TGATAGTGTTGTATTTGATG+TGG 0.569485 4_4:+8256437 None:intergenic
TGATGAAGTGGCTGCAGCGG+TGG 0.581298 4_4:+8256324 None:intergenic
AGACGCGCGCGAAACTCATA+GGG 0.581957 4_4:+8253852 None:intergenic
AATCTTGCCGGAGATGTGAT+CGG 0.588189 4_4:-8255810 Msa0667670:CDS
GCTGGTTTCCCCAAACCGAA+TGG 0.590799 4_4:+8255882 None:intergenic
AGGATGAGAAAAGGAGGAGT+CGG 0.592384 4_4:-8253717 Msa0667670:three_prime_UTR
TGAGTTGATTCATGGTAGAT+GGG 0.603160 4_4:-8255703 Msa0667670:CDS
TACATGGCAAGATGCTGGAA+AGG 0.603751 4_4:-8255631 Msa0667670:intron
CATGAAATTTGAGGGCAATG+AGG 0.607187 4_4:-8253899 Msa0667670:three_prime_UTR
AAGTCACCGGAGTGGCTAGA+CGG 0.609847 4_4:-8255933 Msa0667670:CDS
CGCGCGCGAAACTCATAGGG+TGG 0.610162 4_4:+8253855 None:intergenic
GCAGCCACTTCATCATTCAT+CGG 0.611200 4_4:-8256316 Msa0667670:CDS
TCTCGATGGTTTCTTTGGTG+CGG 0.615685 4_4:+8256222 None:intergenic
AAACTTCCGTCTAGCCACTC+CGG 0.616068 4_4:+8255927 None:intergenic
GTACCCCGGAGCAAAGTCAC+CGG 0.620014 4_4:-8255946 Msa0667670:CDS
TCAATGATGGTAGTGTGAAG+AGG 0.631393 4_4:+8254117 None:intergenic
GCATTGGTTTGTAAACATTG+TGG 0.633055 4_4:-8254023 Msa0667670:three_prime_UTR
CAGCTTGAACAGCAAAACCA+AGG 0.638361 4_4:+8254190 None:intergenic
GGGTCAGATGCTAAACCAAG+TGG 0.639451 4_4:+8254276 None:intergenic
TCCATTTCAGCCTTACAGTG+AGG 0.647585 4_4:-8255754 Msa0667670:CDS
GAATGATGAAGTGGCTGCAG+CGG 0.651301 4_4:+8256321 None:intergenic
AAGTTCAATCCAATTCGGGT+AGG 0.656773 4_4:-8256279 Msa0667670:CDS
GGTGCCGATGAATGATGAAG+TGG 0.658626 4_4:+8256312 None:intergenic
GTACTGGGACTTGATCTCGA+TGG 0.663909 4_4:+8256208 None:intergenic
GATCGTCCATTATGGTACCC+CGG 0.673771 4_4:-8255960 Msa0667670:CDS
GGTCAGATGCTAAACCAAGT+GGG 0.680824 4_4:+8254277 None:intergenic
CCGGAGCAAAGTCACCGGAG+TGG 0.687601 4_4:-8255941 Msa0667670:CDS
ACTCCGGTGACTTTGCTCCG+GGG 0.699763 4_4:+8255943 None:intergenic
AATTGGATTGAACTTCGCGG+AGG 0.719272 4_4:+8256287 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTTTTATTTTTTTTGT+AGG + chr4_4:8254760-8254779 None:intergenic 10.0%
!! TTTGAAAAATTAAAATAAAC+AGG - chr4_4:8254844-8254863 Msa0667670:intron 10.0%
!! ATTATAATTTGAAAGAATAT+AGG - chr4_4:8255062-8255081 Msa0667670:intron 10.0%
!!! TTTTTCTTTTTACATTATAT+TGG - chr4_4:8255137-8255156 Msa0667670:intron 10.0%
!! AGATATAATTAAAGATTTGT+TGG - chr4_4:8253842-8253861 Msa0667670:three_prime_UTR 15.0%
!! AATCTTTAATTATATCTAAC+AGG - chr4_4:8254037-8254056 Msa0667670:three_prime_UTR 15.0%
!!! TTCACTAAATTATGAAATTT+TGG - chr4_4:8255550-8255569 Msa0667670:intron 15.0%
!!! AAATTTTGGTATAATTTTTC+AGG - chr4_4:8255564-8255583 Msa0667670:intron 15.0%
!! CTATATATATAAATGCTATT+TGG - chr4_4:8255979-8255998 Msa0667670:intron 15.0%
!! TTAATTATATCTAACGTACT+GGG + chr4_4:8253834-8253853 None:intergenic 20.0%
!! TTTAATTATATCTAACGTAC+TGG + chr4_4:8253835-8253854 None:intergenic 20.0%
!!! AGTTATAATTAGTTGATAGT+TGG - chr4_4:8253909-8253928 Msa0667670:three_prime_UTR 20.0%
!! AATAAGGTGACAAATATTAT+TGG + chr4_4:8254940-8254959 None:intergenic 20.0%
!!! CAAATTATAATTTGTATGCA+CGG + chr4_4:8255053-8255072 None:intergenic 20.0%
!!! TTGAAAGAATATAGGTTTTA+TGG - chr4_4:8255070-8255089 Msa0667670:intron 20.0%
!! CACATTTCTATTATCATATA+AGG - chr4_4:8255214-8255233 Msa0667670:intron 20.0%
!!! TTAATATTTTTTCTGCTAGA+TGG - chr4_4:8256076-8256095 Msa0667670:intron 20.0%
!!! TAATATTTTTTCTGCTAGAT+GGG - chr4_4:8256077-8256096 Msa0667670:intron 20.0%
!! TATATAATCTGAACTACATA+AGG - chr4_4:8256268-8256287 Msa0667670:CDS 20.0%
!! GTTACATAATAATGTTAAGA+TGG + chr4_4:8256386-8256405 None:intergenic 20.0%
!! GTTTGTGAGTTTTTGAATTT+GGG + chr4_4:8253618-8253637 None:intergenic 25.0%
!! TGTTTGTGAGTTTTTGAATT+TGG + chr4_4:8253619-8253638 None:intergenic 25.0%
! TTTAATTCAAAGTGTGTGTT+TGG - chr4_4:8254522-8254541 Msa0667670:intron 25.0%
!!! TTCATGTTTGTTTTGTATAG+AGG - chr4_4:8254688-8254707 Msa0667670:intron 25.0%
! AATCAAAATGCTTCAAGATA+TGG + chr4_4:8255110-8255129 None:intergenic 25.0%
! AGATCCTCATATTATATGAT+GGG + chr4_4:8255445-8255464 None:intergenic 25.0%
! AAGATCCTCATATTATATGA+TGG + chr4_4:8255446-8255465 None:intergenic 25.0%
!!! TCTAATTTGAGTTTTCTCTA+AGG + chr4_4:8255500-8255519 None:intergenic 25.0%
!! ATATAAATGCTATTTGGCAT+TGG - chr4_4:8255985-8256004 Msa0667670:intron 25.0%
! CAAAACAAGTTAGAACATTT+CGG + chr4_4:8256215-8256234 None:intergenic 25.0%
!!! AATGTTCTAACTTGTTTTGA+AGG - chr4_4:8256216-8256235 Msa0667670:CDS 25.0%
!!! ACTTGTTTTGAAGGTTTTTA+TGG - chr4_4:8256225-8256244 Msa0667670:CDS 25.0%
!!! CTTGTTTTGAAGGTTTTTAT+GGG - chr4_4:8256226-8256245 Msa0667670:CDS 25.0%
! TGATAGTGTTGTATTTGATG+TGG + chr4_4:8253590-8253609 None:intergenic 30.0%
TCACATTAGCATAAACCAAA+TGG - chr4_4:8253665-8253684 Msa0667670:three_prime_UTR 30.0%
ATGAAGCACATATACAAACA+CGG - chr4_4:8255245-8255264 Msa0667670:intron 30.0%
TTCTGTGTAACTATAAGTGT+CGG - chr4_4:8255339-8255358 Msa0667670:intron 30.0%
GATCCTCATATTATATGATG+GGG + chr4_4:8255444-8255463 None:intergenic 30.0%
ATTAGTGTTGTGATTGAGAA+TGG + chr4_4:8255631-8255650 None:intergenic 30.0%
AAAGAAAGCAACACTTCAAT+TGG - chr4_4:8255774-8255793 Msa0667670:CDS 30.0%
TAAAGGACCACTTAACAATT+GGG - chr4_4:8255867-8255886 Msa0667670:CDS 30.0%
TGAGTTAATCAAGAACTAAG+AGG + chr4_4:8255944-8255963 None:intergenic 30.0%
GTTCTTGATTAACTCATGTA+TGG - chr4_4:8255948-8255967 Msa0667670:CDS 30.0%
GTGAAATTCCTAATGTGAAT+TGG - chr4_4:8256042-8256061 Msa0667670:intron 30.0%
TTGACTAAGCATGAAATTTG+AGG - chr4_4:8256116-8256135 Msa0667670:intron 30.0%
TGACTAAGCATGAAATTTGA+GGG - chr4_4:8256117-8256136 Msa0667670:intron 30.0%
GAATTCAATAGGATGAGAAA+AGG - chr4_4:8256298-8256317 Msa0667670:CDS 30.0%
!! AACTTGTTACCCAAACAAAA+TGG - chr4_4:8256403-8256422 Msa0667670:five_prime_UTR 30.0%
! ACTTGTTACCCAAACAAAAT+GGG - chr4_4:8256404-8256423 Msa0667670:five_prime_UTR 30.0%
! TGGTGATGAATTGGTGATTA+TGG + chr4_4:8253567-8253586 None:intergenic 35.0%
TAGTGTTGTATTTGATGTGG+TGG + chr4_4:8253587-8253606 None:intergenic 35.0%
TCAAATTGCAAATACTCAGC+TGG + chr4_4:8254163-8254182 None:intergenic 35.0%
! TTTTTGGACTTCAGAGGTTT+AGG - chr4_4:8254293-8254312 Msa0667670:CDS 35.0%
! TTTTGGACTTCAGAGGTTTA+GGG - chr4_4:8254294-8254313 Msa0667670:CDS 35.0%
!! TGAGTTGATTCATGGTAGAT+GGG - chr4_4:8254321-8254340 Msa0667670:CDS 35.0%
TTGTATATGTGCTTCATGGA+TGG + chr4_4:8255242-8255261 None:intergenic 35.0%
GTGTTTGTATATGTGCTTCA+TGG + chr4_4:8255246-8255265 None:intergenic 35.0%
! TTATATGATGGGGAACACAA+TGG + chr4_4:8255434-8255453 None:intergenic 35.0%
GTTCCCCATCATATAATATG+AGG - chr4_4:8255438-8255457 Msa0667670:intron 35.0%
GTAGAAGGATCAACATATCT+TGG - chr4_4:8255595-8255614 Msa0667670:intron 35.0%
TCTCAATCACAACACTAATC+TGG - chr4_4:8255632-8255651 Msa0667670:CDS 35.0%
! TGGATCGAAGTTCTAGTAAT+TGG - chr4_4:8255652-8255671 Msa0667670:CDS 35.0%
!!! GAAGTGTTGCTTTCTTTTCT+GGG + chr4_4:8255771-8255790 None:intergenic 35.0%
!!! TGAAGTGTTGCTTTCTTTTC+TGG + chr4_4:8255772-8255791 None:intergenic 35.0%
GTAAAGGACCACTTAACAAT+TGG - chr4_4:8255866-8255885 Msa0667670:CDS 35.0%
!! GGAAGAAAAGGTATCAATGA+TGG + chr4_4:8255923-8255942 None:intergenic 35.0%
CAAGAACTAAGAGGAAGAAA+AGG + chr4_4:8255935-8255954 None:intergenic 35.0%
!! GCATTGGTTTGTAAACATTG+TGG - chr4_4:8256001-8256020 Msa0667670:intron 35.0%
TAACTGCTCCAATTCACATT+AGG + chr4_4:8256053-8256072 None:intergenic 35.0%
AATGTGAATTGGAGCAGTTA+AGG - chr4_4:8256053-8256072 Msa0667670:intron 35.0%
TCATAGGGTGGAAAAAGTAA+TGG + chr4_4:8256160-8256179 None:intergenic 35.0%
TTCAATAGGATGAGAAAAGG+AGG - chr4_4:8256301-8256320 Msa0667670:CDS 35.0%
!! GTTTAAGGCCCATTTTGTTT+GGG + chr4_4:8256415-8256434 None:intergenic 35.0%
!! TGTTTAAGGCCCATTTTGTT+TGG + chr4_4:8256416-8256435 None:intergenic 35.0%
CAAAATGGGCCTTAAACATT+AGG - chr4_4:8256418-8256437 Msa0667670:five_prime_UTR 35.0%
ACACTTCGACCTAATGTTTA+AGG + chr4_4:8256430-8256449 None:intergenic 35.0%
TAAACATTAGGTCGAAGTGT+TGG - chr4_4:8256430-8256449 Msa0667670:five_prime_UTR 35.0%
! AAACATTAGGTCGAAGTGTT+GGG - chr4_4:8256431-8256450 Msa0667670:five_prime_UTR 35.0%
! TTGATGTGGTGGTGATGAAT+TGG + chr4_4:8253576-8253595 None:intergenic 40.0%
! ACACACTCCATTTTCTACTC+TGG - chr4_4:8253639-8253658 Msa0667670:three_prime_UTR 40.0%
AAGTTCAATCCAATTCGGGT+AGG - chr4_4:8253745-8253764 Msa0667670:three_prime_UTR 40.0%
TCTTCTTTCCGAAGCCAAAT+CGG + chr4_4:8253779-8253798 None:intergenic 40.0%
CTTGATCTCGATGGTTTCTT+TGG + chr4_4:8253810-8253829 None:intergenic 40.0%
GATTACGGATTCGATCCATT+CGG - chr4_4:8254127-8254146 Msa0667670:CDS 40.0%
AATTTGGCGAAGAATCTTGC+CGG - chr4_4:8254202-8254221 Msa0667670:CDS 40.0%
AGTCCAAAAACCTCACTGTA+AGG + chr4_4:8254283-8254302 None:intergenic 40.0%
!! AGGGAATGTGAGTTGATTCA+TGG - chr4_4:8254313-8254332 Msa0667670:CDS 40.0%
!! GTGAGTTGATTCATGGTAGA+TGG - chr4_4:8254320-8254339 Msa0667670:CDS 40.0%
! TTGGTGCTCTTACTGTTGAA+TGG - chr4_4:8254359-8254378 Msa0667670:CDS 40.0%
CTTACTGTTGAATGGCTTAC+TGG - chr4_4:8254367-8254386 Msa0667670:CDS 40.0%
!! AATGGCTTACTGGTGTTACA+TGG - chr4_4:8254377-8254396 Msa0667670:CDS 40.0%
! AGATGCTGGAAAGGTTTGTT+TGG - chr4_4:8254402-8254421 Msa0667670:CDS 40.0%
!! TTTCAGGTTGAGCTAGTAGA+AGG - chr4_4:8255580-8255599 Msa0667670:intron 40.0%
GTTGTGATTGAGAATGGAAG+TGG + chr4_4:8255625-8255644 None:intergenic 40.0%
GCAGAAAAAAGACTATACCC+AGG - chr4_4:8255709-8255728 Msa0667670:CDS 40.0%
GAAAAAAGACTATACCCAGG+TGG - chr4_4:8255712-8255731 Msa0667670:CDS 40.0%
! GGTCAAAGAATTTTCCACCT+GGG + chr4_4:8255729-8255748 None:intergenic 40.0%
GGAAAATTCTTTGACCCACT+TGG - chr4_4:8255733-8255752 Msa0667670:CDS 40.0%
TGAGTAGCCCAATTGTTAAG+TGG + chr4_4:8255877-8255896 None:intergenic 40.0%
! TCAATGATGGTAGTGTGAAG+AGG + chr4_4:8255910-8255929 None:intergenic 40.0%
CATGAAATTTGAGGGCAATG+AGG - chr4_4:8256125-8256144 Msa0667670:intron 40.0%
!! AACATTAGGTCGAAGTGTTG+GGG - chr4_4:8256432-8256451 Msa0667670:five_prime_UTR 40.0%
GTGAGCACCAGAGTAGAAAA+TGG + chr4_4:8253649-8253668 None:intergenic 45.0%
GCAGCCACTTCATCATTCAT+CGG - chr4_4:8253708-8253727 Msa0667670:three_prime_UTR 45.0%
AATTGGATTGAACTTCGCGG+AGG + chr4_4:8253740-8253759 None:intergenic 45.0%
CCGAATTGGATTGAACTTCG+CGG + chr4_4:8253743-8253762 None:intergenic 45.0%
CCGCGAAGTTCAATCCAATT+CGG - chr4_4:8253740-8253759 Msa0667670:three_prime_UTR 45.0%
CGCGAAGTTCAATCCAATTC+GGG - chr4_4:8253741-8253760 Msa0667670:three_prime_UTR 45.0%
CTTCTTTCCGAAGCCAAATC+GGG + chr4_4:8253778-8253797 None:intergenic 45.0%
TCTCGATGGTTTCTTTGGTG+CGG + chr4_4:8253805-8253824 None:intergenic 45.0%
!! CAGGTACTGATCGTCCATTA+TGG - chr4_4:8254056-8254075 Msa0667670:three_prime_UTR 45.0%
GGAAGTTTGGTCGGAGATTA+CGG - chr4_4:8254112-8254131 Msa0667670:CDS 45.0%
GGATTCGATCCATTCGGTTT+GGG - chr4_4:8254133-8254152 Msa0667670:CDS 45.0%
! GATTCGATCCATTCGGTTTG+GGG - chr4_4:8254134-8254153 Msa0667670:CDS 45.0%
CGACTCGCTTGATCAGAATT+TGG - chr4_4:8254186-8254205 Msa0667670:CDS 45.0%
AATCTTGCCGGAGATGTGAT+CGG - chr4_4:8254214-8254233 Msa0667670:CDS 45.0%
AGATGTGATCGGAACTAGGA+CGG - chr4_4:8254225-8254244 Msa0667670:CDS 45.0%
TCCATTTCAGCCTTACAGTG+AGG - chr4_4:8254270-8254289 Msa0667670:CDS 45.0%
ACCTCACTGTAAGGCTGAAA+TGG + chr4_4:8254274-8254293 None:intergenic 45.0%
! CAGCCTTACAGTGAGGTTTT+TGG - chr4_4:8254277-8254296 Msa0667670:CDS 45.0%
!! GTGAGGTTTTTGGACTTCAG+AGG - chr4_4:8254287-8254306 Msa0667670:CDS 45.0%
TACATGGCAAGATGCTGGAA+AGG - chr4_4:8254393-8254412 Msa0667670:CDS 45.0%
TACAAACACGGATACCAGAC+AGG - chr4_4:8255257-8255276 Msa0667670:intron 45.0%
TATGAAGCGCAGACACACTT+CGG + chr4_4:8255406-8255425 None:intergenic 45.0%
AAGTGTGTCTGCGCTTCATA+GGG - chr4_4:8255406-8255425 Msa0667670:intron 45.0%
CATCAAGCTCAGCATTTCTC+TGG + chr4_4:8255690-8255709 None:intergenic 45.0%
! GGGTCAAAGAATTTTCCACC+TGG + chr4_4:8255730-8255749 None:intergenic 45.0%
GGTCAGATGCTAAACCAAGT+GGG + chr4_4:8255750-8255769 None:intergenic 45.0%
CAAACATGCTCGTCTTGCTA+TGG - chr4_4:8255804-8255823 Msa0667670:CDS 45.0%
! CTTGCTATGGTTGCTTTCCT+TGG - chr4_4:8255817-8255836 Msa0667670:CDS 45.0%
CAGCTTGAACAGCAAAACCA+AGG + chr4_4:8255837-8255856 None:intergenic 45.0%
TGAGGGCAATGAGGAACATT+AGG - chr4_4:8256134-8256153 Msa0667670:intron 45.0%
AAGGCGCGCAAGAATTCAAT+AGG - chr4_4:8256287-8256306 Msa0667670:CDS 45.0%
AGGATGAGAAAAGGAGGAGT+CGG - chr4_4:8256307-8256326 Msa0667670:CDS 45.0%
!!! TTTTATGTTTTTTTTTTTTA+TGG - chr4_4:8254620-8254639 Msa0667670:intron 5.0%
!!! GTTTTTAAAATTATTAAATA+AGG + chr4_4:8254956-8254975 None:intergenic 5.0%
GAATGATGAAGTGGCTGCAG+CGG + chr4_4:8253706-8253725 None:intergenic 50.0%
!! GGTGCCGATGAATGATGAAG+TGG + chr4_4:8253715-8253734 None:intergenic 50.0%
!! ATCCAAGCCCGATTTGGCTT+CGG - chr4_4:8253768-8253787 Msa0667670:three_prime_UTR 50.0%
GTACTGGGACTTGATCTCGA+TGG + chr4_4:8253819-8253838 None:intergenic 50.0%
GATCGTCCATTATGGTACCC+CGG - chr4_4:8254064-8254083 Msa0667670:three_prime_UTR 50.0%
! TTTGCTCCGGGGTACCATAA+TGG + chr4_4:8254073-8254092 None:intergenic 50.0%
AAACTTCCGTCTAGCCACTC+CGG + chr4_4:8254100-8254119 None:intergenic 50.0%
TGGCTAGACGGAAGTTTGGT+CGG - chr4_4:8254103-8254122 Msa0667670:CDS 50.0%
CGGATTCGATCCATTCGGTT+TGG - chr4_4:8254132-8254151 Msa0667670:CDS 50.0%
CCTAGTTCCGATCACATCTC+CGG + chr4_4:8254224-8254243 None:intergenic 50.0%
! TGGGCTATGCTTGCTACTCT+TGG - chr4_4:8254340-8254359 Msa0667670:CDS 50.0%
! GGTGTTACATGGCAAGATGC+TGG - chr4_4:8254388-8254407 Msa0667670:CDS 50.0%
GATTAGACGTGTCCCAGTGT+CGG + chr4_4:8255384-8255403 None:intergenic 50.0%
GAAGTGTGTCTGCGCTTCAT+AGG - chr4_4:8255405-8255424 Msa0667670:intron 50.0%
GGGTCAGATGCTAAACCAAG+TGG + chr4_4:8255751-8255770 None:intergenic 50.0%
CAAGCTGCTGCTACTGGTAA+AGG - chr4_4:8255850-8255869 Msa0667670:CDS 50.0%
! AGTTTCGCGCGCGTCTTATT+GGG - chr4_4:8256179-8256198 Msa0667670:intron 50.0%
TGGATTGAACTTCGCGGAGG+CGG + chr4_4:8253737-8253756 None:intergenic 55.0%
GGCTTGGATCCTACCCGAAT+TGG + chr4_4:8253757-8253776 None:intergenic 55.0%
GGTAGGATCCAAGCCCGATT+TGG - chr4_4:8253762-8253781 Msa0667670:three_prime_UTR 55.0%
TTCCGAAGCCAAATCGGGCT+TGG + chr4_4:8253773-8253792 None:intergenic 55.0%
AAGTCACCGGAGTGGCTAGA+CGG - chr4_4:8254091-8254110 Msa0667670:exon 55.0%
GGAGTGGCTAGACGGAAGTT+TGG - chr4_4:8254099-8254118 Msa0667670:CDS 55.0%
! GCTGGTTTCCCCAAACCGAA+TGG + chr4_4:8254145-8254164 None:intergenic 55.0%
CCGGAGATGTGATCGGAACT+AGG - chr4_4:8254221-8254240 Msa0667670:CDS 55.0%
CACGACACATGTCCGACACT+GGG - chr4_4:8255369-8255388 Msa0667670:intron 55.0%
GCTGTTCAAGCTGCTGCTAC+TGG - chr4_4:8255844-8255863 Msa0667670:CDS 55.0%
AGACGCGCGCGAAACTCATA+GGG + chr4_4:8256175-8256194 None:intergenic 55.0%
AAGACGCGCGCGAAACTCAT+AGG + chr4_4:8256176-8256195 None:intergenic 55.0%
GAGTTTCGCGCGCGTCTTAT+TGG - chr4_4:8256178-8256197 Msa0667670:intron 55.0%
TGATGAAGTGGCTGCAGCGG+TGG + chr4_4:8253703-8253722 None:intergenic 60.0%
GGATTGAACTTCGCGGAGGC+GGG + chr4_4:8253736-8253755 None:intergenic 60.0%
GTACCCCGGAGCAAAGTCAC+CGG - chr4_4:8254078-8254097 Msa0667670:three_prime_UTR 60.0%
ACTCCGGTGACTTTGCTCCG+GGG + chr4_4:8254084-8254103 None:intergenic 60.0%
CACTCCGGTGACTTTGCTCC+GGG + chr4_4:8254085-8254104 None:intergenic 60.0%
CCACTCCGGTGACTTTGCTC+CGG + chr4_4:8254086-8254105 None:intergenic 60.0%
CCATGTCGTGTCTGCCTGTC+TGG + chr4_4:8255274-8255293 None:intergenic 60.0%
CCAGACAGGCAGACACGACA+TGG - chr4_4:8255271-8255290 Msa0667670:intron 60.0%
GCACGACACATGTCCGACAC+TGG - chr4_4:8255368-8255387 Msa0667670:intron 60.0%
TGAAGTGGCTGCAGCGGTGG+CGG + chr4_4:8253700-8253719 None:intergenic 65.0%
CCGGAGCAAAGTCACCGGAG+TGG - chr4_4:8254083-8254102 Msa0667670:exon 65.0%
CGCGCGCGAAACTCATAGGG+TGG + chr4_4:8256172-8256191 None:intergenic 65.0%
TGGCGGTTGCGGCGGCCATT+TGG + chr4_4:8253683-8253702 None:intergenic 70.0%
! TGCAGCGGTGGCGGTTGCGG+CGG + chr4_4:8253691-8253710 None:intergenic 75.0%
! GGCTGCAGCGGTGGCGGTTG+CGG + chr4_4:8253694-8253713 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 8253561 8256485 8253561 ID=Msa0667670;Name=Msa0667670
chr4_4 mRNA 8253561 8256485 8253561 ID=Msa0667670-mRNA-1;Parent=Msa0667670;Name=Msa0667670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=123|1|1|1|1|1|3|537|289
chr4_4 exon 8253561 8254460 8253561 ID=Msa0667670-mRNA-1:exon:2674;Parent=Msa0667670-mRNA-1
chr4_4 exon 8255632 8255987 8255632 ID=Msa0667670-mRNA-1:exon:2673;Parent=Msa0667670-mRNA-1
chr4_4 exon 8256212 8256485 8256212 ID=Msa0667670-mRNA-1:exon:2672;Parent=Msa0667670-mRNA-1
chr4_4 five_prime_UTR 8256363 8256485 8256363 ID=Msa0667670-mRNA-1:five_prime_utr;Parent=Msa0667670-mRNA-1
chr4_4 CDS 8256212 8256362 8256212 ID=Msa0667670-mRNA-1:cds;Parent=Msa0667670-mRNA-1
chr4_4 CDS 8255632 8255987 8255632 ID=Msa0667670-mRNA-1:cds;Parent=Msa0667670-mRNA-1
chr4_4 CDS 8254098 8254460 8254098 ID=Msa0667670-mRNA-1:cds;Parent=Msa0667670-mRNA-1
chr4_4 three_prime_UTR 8253561 8254097 8253561 ID=Msa0667670-mRNA-1:three_prime_utr;Parent=Msa0667670-mRNA-1
Gene Sequence

>Msa0667670

ATGGCCGCCGCAACCGCCACCGCTGCAGCCACTTCATCATTCATCGGCACCCGCCTCCGCGAAGTTCAATCCAATTCGGGTAGGATCCAAGCCCGATTTGGCTTCGGAAAGAAGAAAGCCGCACCAAAGAAACCATCGAGATCAAGTCCCAGTACTGATCGTCCATTATGGTACCCCGGAGCAAAGTCACCGGAGTGGCTAGACGGAAGTTTGGTCGGAGATTACGGATTCGATCCATTCGGTTTGGGGAAACCAGCTGAGTATTTGCAATTTGATCTCGACTCGCTTGATCAGAATTTGGCGAAGAATCTTGCCGGAGATGTGATCGGAACTAGGACGGAGTTTGCTGATGTGAAGTCGACTCCATTTCAGCCTTACAGTGAGGTTTTTGGACTTCAGAGGTTTAGGGAATGTGAGTTGATTCATGGTAGATGGGCTATGCTTGCTACTCTTGGTGCTCTTACTGTTGAATGGCTTACTGGTGTTACATGGCAAGATGCTGGAAAGGTTGAGCTAGTAGAAGGATCAACATATCTTGGACAACCACTTCCATTCTCAATCACAACACTAATCTGGATCGAAGTTCTAGTAATTGGATACATTGAATTCCAGAGAAATGCTGAGCTTGATGCAGAAAAAAGACTATACCCAGGTGGAAAATTCTTTGACCCACTTGGTTTAGCATCTGACCCAGAAAAGAAAGCAACACTTCAATTGGCTGAAATCAAACATGCTCGTCTTGCTATGGTTGCTTTCCTTGGTTTTGCTGTTCAAGCTGCTGCTACTGGTAAAGGACCACTTAACAATTGGGCTACTCATTTGAGTGATCCTCTTCACACTACCATCATTGATACCTTTTCTTCCTCTTAG

Protein sequence

>Msa0667670

MAAATATAAATSSFIGTRLREVQSNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWYPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDAEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS*