AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225280 MtrunA17_Chr2g0331621 97.279 147 3 1 1 146 1 147 4.22e-99 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225280 AT1G52230.1 79.452 146 29 1 1 146 1 145 2.19e-81 236
Msa0225280 AT3G16140.1 78.082 146 31 1 1 146 1 145 8.09e-80 232

Find 60 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCAAATCCAAGAATTTA+AGG 0.134528 2_1:+75418037 Msa0225280:CDS
GTGAAAGTACCTTAAATTCT+TGG 0.244082 2_1:-75418046 None:intergenic
CTTGCTGGCAGTTCCATTAC+TGG 0.265222 2_1:+75417982 Msa0225280:CDS
TATTAGAAACTTTCGGTATT+GGG 0.309147 2_1:+75419777 Msa0225280:three_prime_UTR
TACTTCAGTGCCACAGCTTC+AGG 0.317013 2_1:+75419305 Msa0225280:CDS
AAAAGTAAAACACATTGAAT+TGG 0.320664 2_1:-75419404 None:intergenic
TACTTTGATTTGGAGGATAT+TGG 0.323961 2_1:+75418370 Msa0225280:CDS
CAAGAGTGTGTACTTTGATT+TGG 0.336220 2_1:+75418360 Msa0225280:CDS
TAGTATGCAGCAATTTCATT+AGG 0.352262 2_1:+75419569 Msa0225280:three_prime_UTR
ATATTAGAAACTTTCGGTAT+TGG 0.353474 2_1:+75419776 Msa0225280:three_prime_UTR
TTGCCACGGGGACCGAGCTT+TGG 0.360365 2_1:-75419365 None:intergenic
CTCAATGTTAAGGGTCTTGC+TGG 0.365303 2_1:+75417967 Msa0225280:CDS
ATATGAAAATGAAGATAATA+AGG 0.379488 2_1:-75419698 None:intergenic
CTCACCATACAACCCTCTTC+AGG 0.381984 2_1:+75418435 Msa0225280:CDS
ACCAGCTGGTCTCAATGTTA+AGG 0.384673 2_1:+75417957 Msa0225280:CDS
CCACGGGGACCGAGCTTTGG+TGG 0.404075 2_1:-75419362 None:intergenic
TTAGGATGTTGGTCTTAATT+CGG 0.409293 2_1:+75419587 Msa0225280:three_prime_UTR
GGCTCTGTGGTAGCAAAGTA+TGG 0.420308 2_1:+75418334 Msa0225280:CDS
AGCTGTGGACCTTTCTTGAT+TGG 0.426964 2_1:-75419338 None:intergenic
CACTTGATATTAGAAACTTT+CGG 0.427007 2_1:+75419770 Msa0225280:three_prime_UTR
CAGCAATTTCATTAGGATGT+TGG 0.439676 2_1:+75419576 Msa0225280:three_prime_UTR
GATCAAAATGTGACATGCTT+TGG 0.444197 2_1:-75417862 None:intergenic
AAAGTAAAACACATTGAATT+GGG 0.446423 2_1:-75419403 None:intergenic
CCAGCTGGTCTCAATGTTAA+GGG 0.447321 2_1:+75417958 Msa0225280:CDS
ACTGTATTAAGACTAGTAAT+AGG 0.455465 2_1:-75419509 None:intergenic
GAGTGTGTACTTTGATTTGG+AGG 0.467087 2_1:+75418363 Msa0225280:CDS
GAACGTATAAAACACATAAA+CGG 0.473990 2_1:-75419610 None:intergenic
AGCATCATCATATGATTCAA+TGG 0.483561 2_1:-75419862 None:intergenic
GAGGATATTGGCAACACTAC+AGG 0.483887 2_1:+75418382 Msa0225280:CDS
AATTCTTGGATTTGAAACTC+TGG 0.485960 2_1:-75418032 None:intergenic
CAAACCTGAAGAGGGTTGTA+TGG 0.501808 2_1:-75418439 None:intergenic
CAAGAGTTGAACCACCTCCT+AGG 0.515089 2_1:-75419280 None:intergenic
AATAATCCTCTCTTTGTGAA+TGG 0.515909 2_1:-75419242 None:intergenic
CCCTTAACATTGAGACCAGC+TGG 0.523582 2_1:-75417958 None:intergenic
AGGTAGCAAGGGAAGCCATA+TGG 0.523790 2_1:-75417921 None:intergenic
CCGAGCTTTGGTGGAAGCTG+TGG 0.524654 2_1:-75419353 None:intergenic
GACATTCTACCAATCAAGAA+AGG 0.540823 2_1:+75419329 Msa0225280:CDS
AGATAGCTTAGTTCCAGTAA+TGG 0.548416 2_1:-75417995 None:intergenic
AGCTGGTTGTACACAAGCTA+AGG 0.551993 2_1:-75417941 None:intergenic
GCAGCTCCATTCACAAAGAG+AGG 0.555627 2_1:+75419236 Msa0225280:CDS
TCCAGTAGACAAACCTGAAG+AGG 0.558714 2_1:-75418448 None:intergenic
ACAGGTCAGTGGGATTTGTA+CGG 0.573529 2_1:+75418400 Msa0225280:CDS
TTAGCTTGTGTACAACCAGC+TGG 0.579471 2_1:+75417943 Msa0225280:CDS
GTACACAAGCTAAGGTAGCA+AGG 0.579499 2_1:-75417933 None:intergenic
GATTTGAAACTCTGGCGAGA+GGG 0.583566 2_1:-75418024 None:intergenic
CCACAGCTTCCACCAAAGCT+CGG 0.583979 2_1:+75419353 Msa0225280:CDS
ACAAGAGGAAGAGAATTAAG+TGG 0.584597 2_1:+75417887 Msa0225280:five_prime_UTR
AACTAAATTAGATCTTGCCA+CGG 0.594009 2_1:-75419379 None:intergenic
TGGCAACACTACAGGTCAGT+GGG 0.596869 2_1:+75418390 Msa0225280:CDS
ACTAAATTAGATCTTGCCAC+GGG 0.597169 2_1:-75419378 None:intergenic
GGATTTGAAACTCTGGCGAG+AGG 0.599558 2_1:-75418025 None:intergenic
CCAGTAGACAAACCTGAAGA+GGG 0.614925 2_1:-75418447 None:intergenic
TACACAAGCTAAGGTAGCAA+GGG 0.622521 2_1:-75417932 None:intergenic
TGAAGAGGGTTGTATGGTGA+GGG 0.652580 2_1:-75418433 None:intergenic
AACTTGCAGGAGTGGCTCTG+TGG 0.654086 2_1:+75418321 Msa0225280:intron
CCACCAAAGCTCGGTCCCCG+TGG 0.657534 2_1:+75419362 Msa0225280:CDS
TTGGCAACACTACAGGTCAG+TGG 0.661910 2_1:+75418389 Msa0225280:CDS
TAGAATGTCACCTGAAGCTG+TGG 0.676047 2_1:-75419315 None:intergenic
CTGAAGAGGGTTGTATGGTG+AGG 0.677728 2_1:-75418434 None:intergenic
CTAAATTAGATCTTGCCACG+GGG 0.688209 2_1:-75419377 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTTATCTAATCTAAAT+AGG - chr2_1:75418219-75418238 None:intergenic 15.0%
!! TTATATTAAGTGTCTTTATA+AGG + chr2_1:75418799-75418818 Msa0225280:intron 15.0%
!! ATCAAAGAAATCAATTAATT+TGG - chr2_1:75419142-75419161 None:intergenic 15.0%
!! ATATGAAAATGAAGATAATA+AGG - chr2_1:75419701-75419720 None:intergenic 15.0%
!!! TTATTATCTTCATTTTCATA+TGG + chr2_1:75419700-75419719 Msa0225280:three_prime_UTR 15.0%
!! ATAACTTATCTAATCTAAAT+AGG - chr2_1:75418219-75418238 None:intergenic 15.0%
!! TTATATTAAGTGTCTTTATA+AGG + chr2_1:75418799-75418818 Msa0225280:intron 15.0%
!! ATCAAAGAAATCAATTAATT+TGG - chr2_1:75419142-75419161 None:intergenic 15.0%
!! ATATGAAAATGAAGATAATA+AGG - chr2_1:75419701-75419720 None:intergenic 15.0%
!!! TTATTATCTTCATTTTCATA+TGG + chr2_1:75419700-75419719 Msa0225280:three_prime_UTR 15.0%
!! ACATTAGCGTAATAAAAAAA+CGG - chr2_1:75418125-75418144 None:intergenic 20.0%
!! TAGATCAACAAAATAATCTA+TGG - chr2_1:75418564-75418583 None:intergenic 20.0%
!! AATAAGCTGAAAATAACTTA+TGG + chr2_1:75418702-75418721 Msa0225280:intron 20.0%
!!! CTTCTTGTTTTCTTATAATA+AGG - chr2_1:75418916-75418935 None:intergenic 20.0%
!!! AAATGTAATTAGTTCTTCAT+TGG + chr2_1:75418975-75418994 Msa0225280:intron 20.0%
!! AAAGTAAAACACATTGAATT+GGG - chr2_1:75419406-75419425 None:intergenic 20.0%
!! AAAAGTAAAACACATTGAAT+TGG - chr2_1:75419407-75419426 None:intergenic 20.0%
!!! ATTTTGTAAAATGTTACTTC+AGG - chr2_1:75419825-75419844 None:intergenic 20.0%
!! ACATTAGCGTAATAAAAAAA+CGG - chr2_1:75418125-75418144 None:intergenic 20.0%
!! TAGATCAACAAAATAATCTA+TGG - chr2_1:75418564-75418583 None:intergenic 20.0%
!! AATAAGCTGAAAATAACTTA+TGG + chr2_1:75418702-75418721 Msa0225280:intron 20.0%
!!! CTTCTTGTTTTCTTATAATA+AGG - chr2_1:75418916-75418935 None:intergenic 20.0%
!!! AAATGTAATTAGTTCTTCAT+TGG + chr2_1:75418975-75418994 Msa0225280:intron 20.0%
!! AAAGTAAAACACATTGAATT+GGG - chr2_1:75419406-75419425 None:intergenic 20.0%
!! AAAAGTAAAACACATTGAAT+TGG - chr2_1:75419407-75419426 None:intergenic 20.0%
!!! ATTTTGTAAAATGTTACTTC+AGG - chr2_1:75419825-75419844 None:intergenic 20.0%
! GTGGAAAATAAAAAACCATA+TGG + chr2_1:75417906-75417925 Msa0225280:exon 25.0%
! GTTTCAAATCCAAGAATTTA+AGG + chr2_1:75418037-75418056 Msa0225280:CDS 25.0%
!!! ACATAACATAATTAACTTGC+AGG + chr2_1:75418308-75418327 Msa0225280:intron 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG - chr2_1:75418688-75418707 None:intergenic 25.0%
!! TGTTTTCTTATAATAAGGAC+TGG - chr2_1:75418911-75418930 None:intergenic 25.0%
! ATTTCTCTACTAATATACAC+TGG - chr2_1:75418959-75418978 None:intergenic 25.0%
! AGACATTTAATATGAGAATG+AGG + chr2_1:75419045-75419064 Msa0225280:intron 25.0%
! GACATTTAATATGAGAATGA+GGG + chr2_1:75419046-75419065 Msa0225280:intron 25.0%
!! TGCTGTAACAAATTGATTTA+TGG + chr2_1:75419091-75419110 Msa0225280:intron 25.0%
! ACTGTATTAAGACTAGTAAT+AGG - chr2_1:75419512-75419531 None:intergenic 25.0%
! GAACGTATAAAACACATAAA+CGG - chr2_1:75419613-75419632 None:intergenic 25.0%
! CACTTGATATTAGAAACTTT+CGG + chr2_1:75419770-75419789 Msa0225280:three_prime_UTR 25.0%
! ATATTAGAAACTTTCGGTAT+TGG + chr2_1:75419776-75419795 Msa0225280:three_prime_UTR 25.0%
! TATTAGAAACTTTCGGTATT+GGG + chr2_1:75419777-75419796 Msa0225280:three_prime_UTR 25.0%
! GTGGAAAATAAAAAACCATA+TGG + chr2_1:75417906-75417925 Msa0225280:exon 25.0%
! GTTTCAAATCCAAGAATTTA+AGG + chr2_1:75418037-75418056 Msa0225280:CDS 25.0%
!!! ACATAACATAATTAACTTGC+AGG + chr2_1:75418308-75418327 Msa0225280:intron 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG - chr2_1:75418688-75418707 None:intergenic 25.0%
!! TGTTTTCTTATAATAAGGAC+TGG - chr2_1:75418911-75418930 None:intergenic 25.0%
! ATTTCTCTACTAATATACAC+TGG - chr2_1:75418959-75418978 None:intergenic 25.0%
! AGACATTTAATATGAGAATG+AGG + chr2_1:75419045-75419064 Msa0225280:intron 25.0%
! GACATTTAATATGAGAATGA+GGG + chr2_1:75419046-75419065 Msa0225280:intron 25.0%
!! TGCTGTAACAAATTGATTTA+TGG + chr2_1:75419091-75419110 Msa0225280:intron 25.0%
! ACTGTATTAAGACTAGTAAT+AGG - chr2_1:75419512-75419531 None:intergenic 25.0%
! GAACGTATAAAACACATAAA+CGG - chr2_1:75419613-75419632 None:intergenic 25.0%
! CACTTGATATTAGAAACTTT+CGG + chr2_1:75419770-75419789 Msa0225280:three_prime_UTR 25.0%
! ATATTAGAAACTTTCGGTAT+TGG + chr2_1:75419776-75419795 Msa0225280:three_prime_UTR 25.0%
! TATTAGAAACTTTCGGTATT+GGG + chr2_1:75419777-75419796 Msa0225280:three_prime_UTR 25.0%
! AATTCTTGGATTTGAAACTC+TGG - chr2_1:75418035-75418054 None:intergenic 30.0%
!! GTGAAAGTACCTTAAATTCT+TGG - chr2_1:75418049-75418068 None:intergenic 30.0%
!! TACTTTGATTTGGAGGATAT+TGG + chr2_1:75418370-75418389 Msa0225280:CDS 30.0%
AGTGATGTTTATATGTGTCT+AGG + chr2_1:75418528-75418547 Msa0225280:intron 30.0%
GACACTTAATATAACACAGA+GGG - chr2_1:75418793-75418812 None:intergenic 30.0%
AGACACTTAATATAACACAG+AGG - chr2_1:75418794-75418813 None:intergenic 30.0%
AATAATCCTCTCTTTGTGAA+TGG - chr2_1:75419245-75419264 None:intergenic 30.0%
AACTAAATTAGATCTTGCCA+CGG - chr2_1:75419382-75419401 None:intergenic 30.0%
TAGTATGCAGCAATTTCATT+AGG + chr2_1:75419569-75419588 Msa0225280:three_prime_UTR 30.0%
!! TTAGGATGTTGGTCTTAATT+CGG + chr2_1:75419587-75419606 Msa0225280:three_prime_UTR 30.0%
! AATTCTTGGATTTGAAACTC+TGG - chr2_1:75418035-75418054 None:intergenic 30.0%
!! GTGAAAGTACCTTAAATTCT+TGG - chr2_1:75418049-75418068 None:intergenic 30.0%
!! TACTTTGATTTGGAGGATAT+TGG + chr2_1:75418370-75418389 Msa0225280:CDS 30.0%
AGTGATGTTTATATGTGTCT+AGG + chr2_1:75418528-75418547 Msa0225280:intron 30.0%
GACACTTAATATAACACAGA+GGG - chr2_1:75418793-75418812 None:intergenic 30.0%
AGACACTTAATATAACACAG+AGG - chr2_1:75418794-75418813 None:intergenic 30.0%
AATAATCCTCTCTTTGTGAA+TGG - chr2_1:75419245-75419264 None:intergenic 30.0%
AACTAAATTAGATCTTGCCA+CGG - chr2_1:75419382-75419401 None:intergenic 30.0%
TAGTATGCAGCAATTTCATT+AGG + chr2_1:75419569-75419588 Msa0225280:three_prime_UTR 30.0%
!! TTAGGATGTTGGTCTTAATT+CGG + chr2_1:75419587-75419606 Msa0225280:three_prime_UTR 30.0%
GATCAAAATGTGACATGCTT+TGG - chr2_1:75417865-75417884 None:intergenic 35.0%
!! TCACATTTTGATCACACAAG+AGG + chr2_1:75417872-75417891 Msa0225280:five_prime_UTR 35.0%
ACAAGAGGAAGAGAATTAAG+TGG + chr2_1:75417887-75417906 Msa0225280:five_prime_UTR 35.0%
AGATAGCTTAGTTCCAGTAA+TGG - chr2_1:75417998-75418017 None:intergenic 35.0%
!! ACATAATTAACTTGCAGGAG+TGG + chr2_1:75418313-75418332 Msa0225280:intron 35.0%
! CAAGAGTGTGTACTTTGATT+TGG + chr2_1:75418360-75418379 Msa0225280:CDS 35.0%
GTTTATATGTGTCTAGGCTT+AGG + chr2_1:75418534-75418553 Msa0225280:intron 35.0%
TATAGTCTATAGGACAGCAA+AGG - chr2_1:75418768-75418787 None:intergenic 35.0%
! TTGCTCAAGTTTTTGATCCT+AGG + chr2_1:75419263-75419282 Msa0225280:CDS 35.0%
GACATTCTACCAATCAAGAA+AGG + chr2_1:75419329-75419348 Msa0225280:CDS 35.0%
ACTAAATTAGATCTTGCCAC+GGG - chr2_1:75419381-75419400 None:intergenic 35.0%
CAGCAATTTCATTAGGATGT+TGG + chr2_1:75419576-75419595 Msa0225280:three_prime_UTR 35.0%
GATCAAAATGTGACATGCTT+TGG - chr2_1:75417865-75417884 None:intergenic 35.0%
!! TCACATTTTGATCACACAAG+AGG + chr2_1:75417872-75417891 Msa0225280:five_prime_UTR 35.0%
ACAAGAGGAAGAGAATTAAG+TGG + chr2_1:75417887-75417906 Msa0225280:five_prime_UTR 35.0%
AGATAGCTTAGTTCCAGTAA+TGG - chr2_1:75417998-75418017 None:intergenic 35.0%
!! ACATAATTAACTTGCAGGAG+TGG + chr2_1:75418313-75418332 Msa0225280:intron 35.0%
! CAAGAGTGTGTACTTTGATT+TGG + chr2_1:75418360-75418379 Msa0225280:CDS 35.0%
GTTTATATGTGTCTAGGCTT+AGG + chr2_1:75418534-75418553 Msa0225280:intron 35.0%
TATAGTCTATAGGACAGCAA+AGG - chr2_1:75418768-75418787 None:intergenic 35.0%
! TTGCTCAAGTTTTTGATCCT+AGG + chr2_1:75419263-75419282 Msa0225280:CDS 35.0%
GACATTCTACCAATCAAGAA+AGG + chr2_1:75419329-75419348 Msa0225280:CDS 35.0%
ACTAAATTAGATCTTGCCAC+GGG - chr2_1:75419381-75419400 None:intergenic 35.0%
CAGCAATTTCATTAGGATGT+TGG + chr2_1:75419576-75419595 Msa0225280:three_prime_UTR 35.0%
TACACAAGCTAAGGTAGCAA+GGG - chr2_1:75417935-75417954 None:intergenic 40.0%
AAAAAACGGACAGACGAGTA+TGG - chr2_1:75418111-75418130 None:intergenic 40.0%
!! GAGTGTGTACTTTGATTTGG+AGG + chr2_1:75418363-75418382 Msa0225280:CDS 40.0%
ATATGTGTCTAGGCTTAGGA+AGG + chr2_1:75418538-75418557 Msa0225280:intron 40.0%
!! GCTGTTTCTATAAGCTAACC+TGG + chr2_1:75418667-75418686 Msa0225280:intron 40.0%
! ACAGAGGGAGTATAGTCTAT+AGG - chr2_1:75418778-75418797 None:intergenic 40.0%
! CTCAAGTTTTTGATCCTAGG+AGG + chr2_1:75419266-75419285 Msa0225280:CDS 40.0%
! AAGTTTTTGATCCTAGGAGG+TGG + chr2_1:75419269-75419288 Msa0225280:CDS 40.0%
CTAAATTAGATCTTGCCACG+GGG - chr2_1:75419380-75419399 None:intergenic 40.0%
TACACAAGCTAAGGTAGCAA+GGG - chr2_1:75417935-75417954 None:intergenic 40.0%
AAAAAACGGACAGACGAGTA+TGG - chr2_1:75418111-75418130 None:intergenic 40.0%
!! GAGTGTGTACTTTGATTTGG+AGG + chr2_1:75418363-75418382 Msa0225280:CDS 40.0%
ATATGTGTCTAGGCTTAGGA+AGG + chr2_1:75418538-75418557 Msa0225280:intron 40.0%
!! GCTGTTTCTATAAGCTAACC+TGG + chr2_1:75418667-75418686 Msa0225280:intron 40.0%
! ACAGAGGGAGTATAGTCTAT+AGG - chr2_1:75418778-75418797 None:intergenic 40.0%
! CTCAAGTTTTTGATCCTAGG+AGG + chr2_1:75419266-75419285 Msa0225280:CDS 40.0%
! AAGTTTTTGATCCTAGGAGG+TGG + chr2_1:75419269-75419288 Msa0225280:CDS 40.0%
CTAAATTAGATCTTGCCACG+GGG - chr2_1:75419380-75419399 None:intergenic 40.0%
GTACACAAGCTAAGGTAGCA+AGG - chr2_1:75417936-75417955 None:intergenic 45.0%
AGCTGGTTGTACACAAGCTA+AGG - chr2_1:75417944-75417963 None:intergenic 45.0%
!! TTAGCTTGTGTACAACCAGC+TGG + chr2_1:75417943-75417962 Msa0225280:CDS 45.0%
! ACCAGCTGGTCTCAATGTTA+AGG + chr2_1:75417957-75417976 Msa0225280:CDS 45.0%
! CCAGCTGGTCTCAATGTTAA+GGG + chr2_1:75417958-75417977 Msa0225280:CDS 45.0%
CTCAATGTTAAGGGTCTTGC+TGG + chr2_1:75417967-75417986 Msa0225280:CDS 45.0%
! GATTTGAAACTCTGGCGAGA+GGG - chr2_1:75418027-75418046 None:intergenic 45.0%
GAGGATATTGGCAACACTAC+AGG + chr2_1:75418382-75418401 Msa0225280:CDS 45.0%
ACAGGTCAGTGGGATTTGTA+CGG + chr2_1:75418400-75418419 Msa0225280:CDS 45.0%
TGAAGAGGGTTGTATGGTGA+GGG - chr2_1:75418436-75418455 None:intergenic 45.0%
CAAACCTGAAGAGGGTTGTA+TGG - chr2_1:75418442-75418461 None:intergenic 45.0%
CCAGTAGACAAACCTGAAGA+GGG - chr2_1:75418450-75418469 None:intergenic 45.0%
TCCAGTAGACAAACCTGAAG+AGG - chr2_1:75418451-75418470 None:intergenic 45.0%
AGTCTATAGGACAGCAAAGG+AGG - chr2_1:75418765-75418784 None:intergenic 45.0%
! CACTGGCTACTACTTTAGCA+AGG - chr2_1:75418942-75418961 None:intergenic 45.0%
TAGAATGTCACCTGAAGCTG+TGG - chr2_1:75419318-75419337 None:intergenic 45.0%
AGCTGTGGACCTTTCTTGAT+TGG - chr2_1:75419341-75419360 None:intergenic 45.0%
GTACACAAGCTAAGGTAGCA+AGG - chr2_1:75417936-75417955 None:intergenic 45.0%
AGCTGGTTGTACACAAGCTA+AGG - chr2_1:75417944-75417963 None:intergenic 45.0%
!! TTAGCTTGTGTACAACCAGC+TGG + chr2_1:75417943-75417962 Msa0225280:CDS 45.0%
! ACCAGCTGGTCTCAATGTTA+AGG + chr2_1:75417957-75417976 Msa0225280:CDS 45.0%
! CCAGCTGGTCTCAATGTTAA+GGG + chr2_1:75417958-75417977 Msa0225280:CDS 45.0%
CTCAATGTTAAGGGTCTTGC+TGG + chr2_1:75417967-75417986 Msa0225280:CDS 45.0%
! GATTTGAAACTCTGGCGAGA+GGG - chr2_1:75418027-75418046 None:intergenic 45.0%
GAGGATATTGGCAACACTAC+AGG + chr2_1:75418382-75418401 Msa0225280:CDS 45.0%
ACAGGTCAGTGGGATTTGTA+CGG + chr2_1:75418400-75418419 Msa0225280:CDS 45.0%
TGAAGAGGGTTGTATGGTGA+GGG - chr2_1:75418436-75418455 None:intergenic 45.0%
CAAACCTGAAGAGGGTTGTA+TGG - chr2_1:75418442-75418461 None:intergenic 45.0%
CCAGTAGACAAACCTGAAGA+GGG - chr2_1:75418450-75418469 None:intergenic 45.0%
TCCAGTAGACAAACCTGAAG+AGG - chr2_1:75418451-75418470 None:intergenic 45.0%
AGTCTATAGGACAGCAAAGG+AGG - chr2_1:75418765-75418784 None:intergenic 45.0%
! CACTGGCTACTACTTTAGCA+AGG - chr2_1:75418942-75418961 None:intergenic 45.0%
TAGAATGTCACCTGAAGCTG+TGG - chr2_1:75419318-75419337 None:intergenic 45.0%
AGCTGTGGACCTTTCTTGAT+TGG - chr2_1:75419341-75419360 None:intergenic 45.0%
AGGTAGCAAGGGAAGCCATA+TGG - chr2_1:75417924-75417943 None:intergenic 50.0%
CCCTTAACATTGAGACCAGC+TGG - chr2_1:75417961-75417980 None:intergenic 50.0%
CTTGCTGGCAGTTCCATTAC+TGG + chr2_1:75417982-75418001 Msa0225280:CDS 50.0%
! GGATTTGAAACTCTGGCGAG+AGG - chr2_1:75418028-75418047 None:intergenic 50.0%
GGCTCTGTGGTAGCAAAGTA+TGG + chr2_1:75418334-75418353 Msa0225280:CDS 50.0%
TTGGCAACACTACAGGTCAG+TGG + chr2_1:75418389-75418408 Msa0225280:CDS 50.0%
TGGCAACACTACAGGTCAGT+GGG + chr2_1:75418390-75418409 Msa0225280:CDS 50.0%
CTGAAGAGGGTTGTATGGTG+AGG - chr2_1:75418437-75418456 None:intergenic 50.0%
CTCACCATACAACCCTCTTC+AGG + chr2_1:75418435-75418454 Msa0225280:CDS 50.0%
! CCCTCTTCAGGTTTGTCTAC+TGG + chr2_1:75418447-75418466 Msa0225280:intron 50.0%
GCAGCTCCATTCACAAAGAG+AGG + chr2_1:75419236-75419255 Msa0225280:CDS 50.0%
CAAGAGTTGAACCACCTCCT+AGG - chr2_1:75419283-75419302 None:intergenic 50.0%
TACTTCAGTGCCACAGCTTC+AGG + chr2_1:75419305-75419324 Msa0225280:CDS 50.0%
AGGTAGCAAGGGAAGCCATA+TGG - chr2_1:75417924-75417943 None:intergenic 50.0%
CCCTTAACATTGAGACCAGC+TGG - chr2_1:75417961-75417980 None:intergenic 50.0%
CTTGCTGGCAGTTCCATTAC+TGG + chr2_1:75417982-75418001 Msa0225280:CDS 50.0%
! GGATTTGAAACTCTGGCGAG+AGG - chr2_1:75418028-75418047 None:intergenic 50.0%
GGCTCTGTGGTAGCAAAGTA+TGG + chr2_1:75418334-75418353 Msa0225280:CDS 50.0%
TTGGCAACACTACAGGTCAG+TGG + chr2_1:75418389-75418408 Msa0225280:CDS 50.0%
TGGCAACACTACAGGTCAGT+GGG + chr2_1:75418390-75418409 Msa0225280:CDS 50.0%
CTGAAGAGGGTTGTATGGTG+AGG - chr2_1:75418437-75418456 None:intergenic 50.0%
CTCACCATACAACCCTCTTC+AGG + chr2_1:75418435-75418454 Msa0225280:CDS 50.0%
! CCCTCTTCAGGTTTGTCTAC+TGG + chr2_1:75418447-75418466 Msa0225280:intron 50.0%
GCAGCTCCATTCACAAAGAG+AGG + chr2_1:75419236-75419255 Msa0225280:CDS 50.0%
CAAGAGTTGAACCACCTCCT+AGG - chr2_1:75419283-75419302 None:intergenic 50.0%
TACTTCAGTGCCACAGCTTC+AGG + chr2_1:75419305-75419324 Msa0225280:CDS 50.0%
! AACTTGCAGGAGTGGCTCTG+TGG + chr2_1:75418321-75418340 Msa0225280:intron 55.0%
CCACAGCTTCCACCAAAGCT+CGG + chr2_1:75419353-75419372 Msa0225280:CDS 55.0%
! AACTTGCAGGAGTGGCTCTG+TGG + chr2_1:75418321-75418340 Msa0225280:intron 55.0%
CCACAGCTTCCACCAAAGCT+CGG + chr2_1:75419353-75419372 Msa0225280:CDS 55.0%
! CCGAGCTTTGGTGGAAGCTG+TGG - chr2_1:75419356-75419375 None:intergenic 60.0%
! CCGAGCTTTGGTGGAAGCTG+TGG - chr2_1:75419356-75419375 None:intergenic 60.0%
TTGCCACGGGGACCGAGCTT+TGG - chr2_1:75419368-75419387 None:intergenic 65.0%
TTGCCACGGGGACCGAGCTT+TGG - chr2_1:75419368-75419387 None:intergenic 65.0%
! CCACGGGGACCGAGCTTTGG+TGG - chr2_1:75419365-75419384 None:intergenic 70.0%
CCACCAAAGCTCGGTCCCCG+TGG + chr2_1:75419362-75419381 Msa0225280:CDS 70.0%
! CCACGGGGACCGAGCTTTGG+TGG - chr2_1:75419365-75419384 None:intergenic 70.0%
CCACCAAAGCTCGGTCCCCG+TGG + chr2_1:75419362-75419381 Msa0225280:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 75417858 75419873 75417858 ID=Msa0225280;Name=Msa0225280
chr2_1 mRNA 75417858 75419873 75417858 ID=Msa0225280-mRNA-1;Parent=Msa0225280;Name=Msa0225280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=67|1|1|1|1|1|3|479|146
chr2_1 exon 75417858 75418058 75417858 ID=Msa0225280-mRNA-1:exon:22532;Parent=Msa0225280-mRNA-1
chr2_1 exon 75418330 75418456 75418330 ID=Msa0225280-mRNA-1:exon:22533;Parent=Msa0225280-mRNA-1
chr2_1 exon 75419215 75419873 75419215 ID=Msa0225280-mRNA-1:exon:22534;Parent=Msa0225280-mRNA-1
chr2_1 five_prime_UTR 75417858 75417924 75417858 ID=Msa0225280-mRNA-1:five_prime_utr;Parent=Msa0225280-mRNA-1
chr2_1 CDS 75417925 75418058 75417925 ID=Msa0225280-mRNA-1:cds;Parent=Msa0225280-mRNA-1
chr2_1 CDS 75418330 75418456 75418330 ID=Msa0225280-mRNA-1:cds;Parent=Msa0225280-mRNA-1
chr2_1 CDS 75419215 75419394 75419215 ID=Msa0225280-mRNA-1:cds;Parent=Msa0225280-mRNA-1
chr2_1 three_prime_UTR 75419395 75419873 75419395 ID=Msa0225280-mRNA-1:three_prime_utr;Parent=Msa0225280-mRNA-1
Gene Sequence

>Msa0225280

ATGGCTTCCCTTGCTACCTTAGCTTGTGTACAACCAGCTGGTCTCAATGTTAAGGGTCTTGCTGGCAGTTCCATTACTGGAACTAAGCTATCTTTCAAGCCCTCTCGCCAGAGTTTCAAATCCAAGAATTTAAGGAGTGGCTCTGTGGTAGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATATTGGCAACACTACAGGTCAGTGGGATTTGTACGGCTCAGATGCACCCTCACCATACAACCCTCTTCAGAGCAAGTTCTTTGAGACATTTGCAGCTCCATTCACAAAGAGAGGATTATTGCTCAAGTTTTTGATCCTAGGAGGTGGTTCAACTCTTGCATACTTCAGTGCCACAGCTTCAGGTGACATTCTACCAATCAAGAAAGGTCCACAGCTTCCACCAAAGCTCGGTCCCCGTGGCAAGATCTAA

Protein sequence

>Msa0225280

MASLATLACVQPAGLNVKGLAGSSITGTKLSFKPSRQSFKSKNLRSGSVVAKYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI*