AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1184100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184100 MtrunA17_Chr8g0335111 98.276 232 4 0 1 232 1 232 1.25e-168 464
Msa1184100 MtrunA17_Chr3g0109401 29.524 105 74 0 127 231 73 177 2.14e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184100 AT4G05180.2 69.362 235 64 4 1 232 1 230 1.04e-110 317
Msa1184100 AT4G05180.1 69.362 235 64 4 1 232 1 230 1.04e-110 317
Msa1184100 AT4G21280.1 69.737 228 64 3 5 232 1 223 1.94e-105 304
Msa1184100 AT4G21280.2 69.432 229 64 4 5 232 1 224 1.27e-103 299
Msa1184100 AT3G01440.1 25.989 177 119 4 61 231 49 219 8.66e-11 60.1

Find 65 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATATGGCCAAGCTTTC+TGG 0.130603 8_1:-19648162 None:intergenic
TCACTTTATGCAATTCTTAA+TGG 0.159194 8_1:+19649016 Msa1184100:three_prime_UTR
AATGATGTTCTTAGCAAAAT+TGG 0.209646 8_1:+19648861 Msa1184100:CDS
GGTGGCCCTCCTCCACCTTC+TGG 0.276244 8_1:+19647204 Msa1184100:CDS
TCTTGTGTAAGCTTTGTCTA+TGG 0.296268 8_1:+19648907 Msa1184100:three_prime_UTR
GATATCCTGGAAGAGCTTTC+CGG 0.325246 8_1:-19648284 None:intergenic
AGGAGGGCCACCAACTTTAA+TGG 0.339587 8_1:-19647193 None:intergenic
CGTAGATCATTCTGAAGATA+TGG 0.365781 8_1:-19648175 None:intergenic
GTGCTTGGTCTTGTTGCAAC+TGG 0.375439 8_1:+19647123 Msa1184100:CDS
CTTTGGCTTTGCAGAGATGA+TGG 0.383227 8_1:-19648233 None:intergenic
TGGTCTTGTTGCAACTGGTT+TGG 0.399632 8_1:+19647128 Msa1184100:CDS
ACTCACCGGAAAGCTCTTCC+AGG 0.411588 8_1:+19648279 Msa1184100:CDS
TTTCTTTCAATGGTAGGTTA+AGG 0.416462 8_1:-19648048 None:intergenic
TAAAGAAGTAATGGATGAAA+AGG 0.422031 8_1:-19646876 None:intergenic
GGCTCAAGCTATGGCATCAA+TGG 0.422031 8_1:+19646933 Msa1184100:CDS
GGAGGGCCACCAACTTTAAT+GGG 0.432194 8_1:-19647192 None:intergenic
TGTTAAAGCACAACAACAAC+AGG 0.432911 8_1:+19647083 Msa1184100:CDS
TTAACCTACCATTGAAAGAA+AGG 0.436888 8_1:+19648050 Msa1184100:CDS
TTGCAGAGATGATGGTGTTA+AGG 0.438783 8_1:-19648225 None:intergenic
GCTGCCTCAGTTGGTGTCAA+TGG 0.441161 8_1:-19648085 None:intergenic
AGGTAGAACCTTTCTTTCAA+TGG 0.442299 8_1:-19648058 None:intergenic
CTTTCCGGTGAGTTCCTTGA+GGG 0.450519 8_1:-19648269 None:intergenic
GTCTCAGAGCTGGCTATCTT+CGG 0.456619 8_1:+19648197 Msa1184100:CDS
GCTCTTGCAGCTGCCTCAGT+TGG 0.457785 8_1:-19648094 None:intergenic
GCCATTCCCATTAAAGTTGG+TGG 0.462320 8_1:+19647186 Msa1184100:CDS
TACTTACATTGTCGATATCC+TGG 0.468976 8_1:-19648297 None:intergenic
AGGCCACCAGAAGGTGGAGG+AGG 0.471417 8_1:-19647210 None:intergenic
GGCCCTCCTCCACCTTCTGG+TGG 0.478722 8_1:+19647207 Msa1184100:CDS
CAAGCTATGGCATCAATGGC+TGG 0.483768 8_1:+19646937 Msa1184100:CDS
CTCTACAATGGCTCAAGCTA+TGG 0.486675 8_1:+19646924 Msa1184100:exon
CAAGTGGAAAATGTTAGATA+AGG 0.506588 8_1:+19646802 Msa1184100:five_prime_UTR
AGAACCTTTCTTTCAATGGT+AGG 0.507585 8_1:-19648054 None:intergenic
TGAGGCAGCTGCAAGAGCTA+AGG 0.508030 8_1:+19648099 Msa1184100:CDS
GCCACCAACTTTAATGGGAA+TGG 0.510062 8_1:-19647187 None:intergenic
TTCAACTGAGTGGATCAAAC+AGG 0.511674 8_1:+19647004 Msa1184100:CDS
TGTTCAAGCTGTTCTTGCTG+AGG 0.514649 8_1:+19647164 Msa1184100:CDS
AAGAACAGCTTGAACAAAAG+AGG 0.520210 8_1:-19647157 None:intergenic
TTCATCATCTCAAGCTGTGA+TGG 0.526246 8_1:+19646972 Msa1184100:CDS
TCAATGGCTGGTTGCTTACG+TGG 0.530127 8_1:+19646949 Msa1184100:CDS
GAGGCCATTCCCATTAAAGT+TGG 0.533037 8_1:+19647183 Msa1184100:CDS
AAAATTTGCTATAAGCAAGC+AGG 0.535603 8_1:+19648983 Msa1184100:three_prime_UTR
AGTAGCAGAAGAGCAGTGCT+TGG 0.543090 8_1:+19647108 Msa1184100:CDS
AATGATCTACGTCTCAGAGC+TGG 0.548338 8_1:+19648187 Msa1184100:CDS
TAGTACTTCTCTGCATCTGA+GGG 0.548759 8_1:-19648816 None:intergenic
AGTTCATAGACCAGAAAGCT+TGG 0.554807 8_1:+19648152 Msa1184100:CDS
TTATGACAATAAAGAAGTAA+TGG 0.556661 8_1:-19646885 None:intergenic
GGCCACCAGAAGGTGGAGGA+GGG 0.557926 8_1:-19647209 None:intergenic
TTGCTGATAATTAGATGACT+TGG 0.566702 8_1:+19649051 Msa1184100:three_prime_UTR
CAGTTGGTGTCAATGGTTGA+AGG 0.570020 8_1:-19648078 None:intergenic
ATGTGAAAATCAAAGCACTT+AGG 0.573292 8_1:-19649104 None:intergenic
ATAGTACTTCTCTGCATCTG+AGG 0.575292 8_1:-19648817 None:intergenic
TCATCTCAAGCTGTGATGGA+AGG 0.586825 8_1:+19646976 Msa1184100:CDS
CGAAGGCCACCAGAAGGTGG+AGG 0.590512 8_1:-19647213 None:intergenic
ATTCTTCTACTTCTCTACAA+TGG 0.604207 8_1:+19646912 Msa1184100:exon
AAATCCCTCAAGGAACTCAC+CGG 0.605407 8_1:+19648265 Msa1184100:CDS
GCTTTCCGGTGAGTTCCTTG+AGG 0.616393 8_1:-19648270 None:intergenic
CATGATCCAACTTATCCAAG+TGG 0.618047 8_1:+19646786 None:intergenic
TTACGAAGGCCACCAGAAGG+TGG 0.625990 8_1:-19647216 None:intergenic
AACAGGTTGAACATGTTGCA+TGG 0.626500 8_1:+19647021 Msa1184100:CDS
CATCATCTCTGCAAAGCCAA+AGG 0.627597 8_1:+19648234 Msa1184100:CDS
GCATGGTAGCAACAGTAACA+AGG 0.637680 8_1:+19647038 Msa1184100:CDS
TACTTACGAAGGCCACCAGA+AGG 0.643651 8_1:-19647219 None:intergenic
GAAGGAAGTCTTCAACTGAG+TGG 0.680495 8_1:+19646994 Msa1184100:CDS
AGTACTTCTCTGCATCTGAG+GGG 0.682536 8_1:-19648815 None:intergenic
TCAACCATTGACACCAACTG+AGG 0.698559 8_1:+19648081 Msa1184100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACATTTATTAAGAATGA+TGG + chr8_1:19647374-19647393 Msa1184100:intron 15.0%
!!! TATACAATATTACATTTTCA+AGG + chr8_1:19648318-19648337 Msa1184100:intron 15.0%
!!! TTGTTTTTATTGTTTTAAGA+AGG + chr8_1:19649139-19649158 Msa1184100:three_prime_UTR 15.0%
!! TTTACATTTATTAAGAATGA+TGG + chr8_1:19647374-19647393 Msa1184100:intron 15.0%
!!! TATACAATATTACATTTTCA+AGG + chr8_1:19648318-19648337 Msa1184100:intron 15.0%
!!! TTGTTTTTATTGTTTTAAGA+AGG + chr8_1:19649139-19649158 Msa1184100:three_prime_UTR 15.0%
!! TTATGACAATAAAGAAGTAA+TGG - chr8_1:19646888-19646907 None:intergenic 20.0%
!! TTAAATATGAATACTTACGA+AGG - chr8_1:19647233-19647252 None:intergenic 20.0%
!!! TATTTTACCTCTAATTGTAA+TGG + chr8_1:19647411-19647430 Msa1184100:intron 20.0%
!! AAAAAAATGACTAAATTTGC+TGG - chr8_1:19647523-19647542 None:intergenic 20.0%
!!! ATGATATTGCTATTTGTATT+CGG + chr8_1:19647608-19647627 Msa1184100:intron 20.0%
!! TTACAAGAAAAGAAAGAAAT+AGG - chr8_1:19647840-19647859 None:intergenic 20.0%
!!! TTCAACATTCTAGAAATTAT+TGG - chr8_1:19647972-19647991 None:intergenic 20.0%
!!! ATGTTGAATTAACTGATTTA+TGG + chr8_1:19647984-19648003 Msa1184100:intron 20.0%
!!! ATTAACTGATTTATGGAATT+TGG + chr8_1:19647991-19648010 Msa1184100:intron 20.0%
!! TAAATATCGATCTTAAAATC+AGG - chr8_1:19648484-19648503 None:intergenic 20.0%
!! TTATGACAATAAAGAAGTAA+TGG - chr8_1:19646888-19646907 None:intergenic 20.0%
!! TTAAATATGAATACTTACGA+AGG - chr8_1:19647233-19647252 None:intergenic 20.0%
!!! TATTTTACCTCTAATTGTAA+TGG + chr8_1:19647411-19647430 Msa1184100:intron 20.0%
!! AAAAAAATGACTAAATTTGC+TGG - chr8_1:19647523-19647542 None:intergenic 20.0%
!!! ATGATATTGCTATTTGTATT+CGG + chr8_1:19647608-19647627 Msa1184100:intron 20.0%
!! TTACAAGAAAAGAAAGAAAT+AGG - chr8_1:19647840-19647859 None:intergenic 20.0%
!!! TTCAACATTCTAGAAATTAT+TGG - chr8_1:19647972-19647991 None:intergenic 20.0%
!!! ATGTTGAATTAACTGATTTA+TGG + chr8_1:19647984-19648003 Msa1184100:intron 20.0%
!!! ATTAACTGATTTATGGAATT+TGG + chr8_1:19647991-19648010 Msa1184100:intron 20.0%
!! TAAATATCGATCTTAAAATC+AGG - chr8_1:19648484-19648503 None:intergenic 20.0%
!!! TAAAGAAGTAATGGATGAAA+AGG - chr8_1:19646879-19646898 None:intergenic 25.0%
! GTATTTATATTTGAGTCAAG+AGG - chr8_1:19647349-19647368 None:intergenic 25.0%
! TAGAATAGTAACATTAAGTG+TGG + chr8_1:19647465-19647484 Msa1184100:intron 25.0%
! TATTCTCCTATTAAGAACAT+CGG - chr8_1:19647793-19647812 None:intergenic 25.0%
! ATGTTCTTAATAGGAGAATA+CGG + chr8_1:19647793-19647812 Msa1184100:intron 25.0%
!! ACATTCTAGAAATTATTGGA+TGG - chr8_1:19647968-19647987 None:intergenic 25.0%
!!! TAAATTTGTTGTTGTAGTAC+TGG + chr8_1:19648343-19648362 Msa1184100:intron 25.0%
! CTAAATTGATAAAGAGCTAT+CGG - chr8_1:19648721-19648740 None:intergenic 25.0%
! GATAGCTCTTTATCAATTTA+GGG + chr8_1:19648720-19648739 Msa1184100:intron 25.0%
! AATGATGTTCTTAGCAAAAT+TGG + chr8_1:19648861-19648880 Msa1184100:CDS 25.0%
! TCACTTTATGCAATTCTTAA+TGG + chr8_1:19649016-19649035 Msa1184100:three_prime_UTR 25.0%
!!! TAAAGAAGTAATGGATGAAA+AGG - chr8_1:19646879-19646898 None:intergenic 25.0%
! GTATTTATATTTGAGTCAAG+AGG - chr8_1:19647349-19647368 None:intergenic 25.0%
! TAGAATAGTAACATTAAGTG+TGG + chr8_1:19647465-19647484 Msa1184100:intron 25.0%
! TATTCTCCTATTAAGAACAT+CGG - chr8_1:19647793-19647812 None:intergenic 25.0%
! ATGTTCTTAATAGGAGAATA+CGG + chr8_1:19647793-19647812 Msa1184100:intron 25.0%
!! ACATTCTAGAAATTATTGGA+TGG - chr8_1:19647968-19647987 None:intergenic 25.0%
!!! TAAATTTGTTGTTGTAGTAC+TGG + chr8_1:19648343-19648362 Msa1184100:intron 25.0%
! CTAAATTGATAAAGAGCTAT+CGG - chr8_1:19648721-19648740 None:intergenic 25.0%
! GATAGCTCTTTATCAATTTA+GGG + chr8_1:19648720-19648739 Msa1184100:intron 25.0%
! AATGATGTTCTTAGCAAAAT+TGG + chr8_1:19648861-19648880 Msa1184100:CDS 25.0%
! TCACTTTATGCAATTCTTAA+TGG + chr8_1:19649016-19649035 Msa1184100:three_prime_UTR 25.0%
! CTTATCTAACATTTTCCACT+TGG - chr8_1:19646804-19646823 None:intergenic 30.0%
CAAGTGGAAAATGTTAGATA+AGG + chr8_1:19646802-19646821 Msa1184100:five_prime_UTR 30.0%
ATTCTTCTACTTCTCTACAA+TGG + chr8_1:19646912-19646931 Msa1184100:exon 30.0%
TGTTGTCAATTCAAGTAACA+TGG + chr8_1:19647300-19647319 Msa1184100:intron 30.0%
GAGATAACCATTACAATTAG+AGG - chr8_1:19647421-19647440 None:intergenic 30.0%
TATTCTAGCATTCAGAACAT+CGG + chr8_1:19647655-19647674 Msa1184100:intron 30.0%
AATGAAAGTCTGCAATTTCT+TGG - chr8_1:19647707-19647726 None:intergenic 30.0%
TTTCTTTCAATGGTAGGTTA+AGG - chr8_1:19648051-19648070 None:intergenic 30.0%
TTAACCTACCATTGAAAGAA+AGG + chr8_1:19648050-19648069 Msa1184100:CDS 30.0%
AGTTAATGTTGTCTCAATTG+CGG + chr8_1:19648651-19648670 Msa1184100:intron 30.0%
CGATAGCTCTTTATCAATTT+AGG + chr8_1:19648719-19648738 Msa1184100:intron 30.0%
!! AAAATTTGCTATAAGCAAGC+AGG + chr8_1:19648983-19649002 Msa1184100:three_prime_UTR 30.0%
TTGCTGATAATTAGATGACT+TGG + chr8_1:19649051-19649070 Msa1184100:three_prime_UTR 30.0%
! ATGTGAAAATCAAAGCACTT+AGG - chr8_1:19649107-19649126 None:intergenic 30.0%
! TAACATTTTCCACTTGGATA+AGG - chr8_1:19646798-19646817 None:intergenic 30.0%
! CTTATCTAACATTTTCCACT+TGG - chr8_1:19646804-19646823 None:intergenic 30.0%
CAAGTGGAAAATGTTAGATA+AGG + chr8_1:19646802-19646821 Msa1184100:five_prime_UTR 30.0%
ATTCTTCTACTTCTCTACAA+TGG + chr8_1:19646912-19646931 Msa1184100:exon 30.0%
TGTTGTCAATTCAAGTAACA+TGG + chr8_1:19647300-19647319 Msa1184100:intron 30.0%
GAGATAACCATTACAATTAG+AGG - chr8_1:19647421-19647440 None:intergenic 30.0%
TATTCTAGCATTCAGAACAT+CGG + chr8_1:19647655-19647674 Msa1184100:intron 30.0%
AATGAAAGTCTGCAATTTCT+TGG - chr8_1:19647707-19647726 None:intergenic 30.0%
TTTCTTTCAATGGTAGGTTA+AGG - chr8_1:19648051-19648070 None:intergenic 30.0%
TTAACCTACCATTGAAAGAA+AGG + chr8_1:19648050-19648069 Msa1184100:CDS 30.0%
AGTTAATGTTGTCTCAATTG+CGG + chr8_1:19648651-19648670 Msa1184100:intron 30.0%
CGATAGCTCTTTATCAATTT+AGG + chr8_1:19648719-19648738 Msa1184100:intron 30.0%
!! AAAATTTGCTATAAGCAAGC+AGG + chr8_1:19648983-19649002 Msa1184100:three_prime_UTR 30.0%
TTGCTGATAATTAGATGACT+TGG + chr8_1:19649051-19649070 Msa1184100:three_prime_UTR 30.0%
! ATGTGAAAATCAAAGCACTT+AGG - chr8_1:19649107-19649126 None:intergenic 30.0%
TGTTAAAGCACAACAACAAC+AGG + chr8_1:19647083-19647102 Msa1184100:CDS 35.0%
AAGAACAGCTTGAACAAAAG+AGG - chr8_1:19647160-19647179 None:intergenic 35.0%
CAAGTAACATGGTAAAACCT+TGG + chr8_1:19647311-19647330 Msa1184100:intron 35.0%
ATCATTAGATCAAGACCGAA+CGG + chr8_1:19647680-19647699 Msa1184100:intron 35.0%
GAACTTGATTCTGAATTGTC+CGG + chr8_1:19647750-19647769 Msa1184100:intron 35.0%
ATTGTCCGGTCTTGATTAAA+TGG + chr8_1:19647764-19647783 Msa1184100:intron 35.0%
AAATAGGTTTCCATGCAGTA+GGG - chr8_1:19647824-19647843 None:intergenic 35.0%
! GATTTATGGAATTTGGTAGC+TGG + chr8_1:19647998-19648017 Msa1184100:intron 35.0%
AGAACCTTTCTTTCAATGGT+AGG - chr8_1:19648057-19648076 None:intergenic 35.0%
AGGTAGAACCTTTCTTTCAA+TGG - chr8_1:19648061-19648080 None:intergenic 35.0%
! CGTAGATCATTCTGAAGATA+TGG - chr8_1:19648178-19648197 None:intergenic 35.0%
TACTTACATTGTCGATATCC+TGG - chr8_1:19648300-19648319 None:intergenic 35.0%
ACTGCAGATAATCACGTATT+TGG + chr8_1:19648385-19648404 Msa1184100:intron 35.0%
TCACGTATTTGGATTGCTTA+TGG + chr8_1:19648396-19648415 Msa1184100:intron 35.0%
CAGCAAATTGGTTGTAAAGT+TGG - chr8_1:19648567-19648586 None:intergenic 35.0%
CATTCATGTAGTCAGCAAAT+TGG - chr8_1:19648579-19648598 None:intergenic 35.0%
CAATCCAAATTCGAGAATCA+CGG + chr8_1:19648620-19648639 Msa1184100:intron 35.0%
GTTAACGACATAAAAACCCA+CGG + chr8_1:19648684-19648703 Msa1184100:intron 35.0%
! TCTTTATCAATTTAGGGCTG+TGG + chr8_1:19648726-19648745 Msa1184100:intron 35.0%
! TCTTGTGTAAGCTTTGTCTA+TGG + chr8_1:19648907-19648926 Msa1184100:three_prime_UTR 35.0%
AGAAGGTGAGAACAAAAAGA+AGG + chr8_1:19649156-19649175 Msa1184100:three_prime_UTR 35.0%
TGTTAAAGCACAACAACAAC+AGG + chr8_1:19647083-19647102 Msa1184100:CDS 35.0%
AAGAACAGCTTGAACAAAAG+AGG - chr8_1:19647160-19647179 None:intergenic 35.0%
CAAGTAACATGGTAAAACCT+TGG + chr8_1:19647311-19647330 Msa1184100:intron 35.0%
ATCATTAGATCAAGACCGAA+CGG + chr8_1:19647680-19647699 Msa1184100:intron 35.0%
GAACTTGATTCTGAATTGTC+CGG + chr8_1:19647750-19647769 Msa1184100:intron 35.0%
ATTGTCCGGTCTTGATTAAA+TGG + chr8_1:19647764-19647783 Msa1184100:intron 35.0%
AAATAGGTTTCCATGCAGTA+GGG - chr8_1:19647824-19647843 None:intergenic 35.0%
! GATTTATGGAATTTGGTAGC+TGG + chr8_1:19647998-19648017 Msa1184100:intron 35.0%
AGAACCTTTCTTTCAATGGT+AGG - chr8_1:19648057-19648076 None:intergenic 35.0%
AGGTAGAACCTTTCTTTCAA+TGG - chr8_1:19648061-19648080 None:intergenic 35.0%
! CGTAGATCATTCTGAAGATA+TGG - chr8_1:19648178-19648197 None:intergenic 35.0%
TACTTACATTGTCGATATCC+TGG - chr8_1:19648300-19648319 None:intergenic 35.0%
ACTGCAGATAATCACGTATT+TGG + chr8_1:19648385-19648404 Msa1184100:intron 35.0%
TCACGTATTTGGATTGCTTA+TGG + chr8_1:19648396-19648415 Msa1184100:intron 35.0%
CAGCAAATTGGTTGTAAAGT+TGG - chr8_1:19648567-19648586 None:intergenic 35.0%
CATTCATGTAGTCAGCAAAT+TGG - chr8_1:19648579-19648598 None:intergenic 35.0%
CAATCCAAATTCGAGAATCA+CGG + chr8_1:19648620-19648639 Msa1184100:intron 35.0%
GTTAACGACATAAAAACCCA+CGG + chr8_1:19648684-19648703 Msa1184100:intron 35.0%
! TCTTTATCAATTTAGGGCTG+TGG + chr8_1:19648726-19648745 Msa1184100:intron 35.0%
! TCTTGTGTAAGCTTTGTCTA+TGG + chr8_1:19648907-19648926 Msa1184100:three_prime_UTR 35.0%
AGAAGGTGAGAACAAAAAGA+AGG + chr8_1:19649156-19649175 Msa1184100:three_prime_UTR 35.0%
TTCATCATCTCAAGCTGTGA+TGG + chr8_1:19646972-19646991 Msa1184100:CDS 40.0%
TTCAACTGAGTGGATCAAAC+AGG + chr8_1:19647004-19647023 Msa1184100:CDS 40.0%
! AACAGGTTGAACATGTTGCA+TGG + chr8_1:19647021-19647040 Msa1184100:CDS 40.0%
AGAGGCAGTAACATATACCA+AGG - chr8_1:19647331-19647350 None:intergenic 40.0%
TATTCGGAGTACATGCAGTT+AGG + chr8_1:19647624-19647643 Msa1184100:intron 40.0%
! GGTTGCCATTTAATCAAGAC+CGG - chr8_1:19647772-19647791 None:intergenic 40.0%
TGGCAACCGATGTTCTTAAT+AGG + chr8_1:19647784-19647803 Msa1184100:intron 40.0%
GAAATAGGTTTCCATGCAGT+AGG - chr8_1:19647825-19647844 None:intergenic 40.0%
AGTTCATAGACCAGAAAGCT+TGG + chr8_1:19648152-19648171 Msa1184100:CDS 40.0%
! TTGCAGAGATGATGGTGTTA+AGG - chr8_1:19648228-19648247 None:intergenic 40.0%
!!! AGGGATTTTTTCTGGTCCTT+TGG - chr8_1:19648253-19648272 None:intergenic 40.0%
!!! GTTCCTTGAGGGATTTTTTC+TGG - chr8_1:19648261-19648280 None:intergenic 40.0%
ATCTGCAGTCTCAAGAACTT+CGG - chr8_1:19648374-19648393 None:intergenic 40.0%
TTGACCGTGATTCTCGAATT+TGG - chr8_1:19648627-19648646 None:intergenic 40.0%
! ATTTAGGGCTGTGGAAAGAT+TGG + chr8_1:19648735-19648754 Msa1184100:intron 40.0%
! TTTTCTTCTTTGTTCCCAGC+TGG + chr8_1:19648770-19648789 Msa1184100:intron 40.0%
! TTTTGCTGCATAATCCAGCT+GGG - chr8_1:19648787-19648806 None:intergenic 40.0%
TAGTACTTCTCTGCATCTGA+GGG - chr8_1:19648819-19648838 None:intergenic 40.0%
ATAGTACTTCTCTGCATCTG+AGG - chr8_1:19648820-19648839 None:intergenic 40.0%
TTCATCATCTCAAGCTGTGA+TGG + chr8_1:19646972-19646991 Msa1184100:CDS 40.0%
TTCAACTGAGTGGATCAAAC+AGG + chr8_1:19647004-19647023 Msa1184100:CDS 40.0%
! AACAGGTTGAACATGTTGCA+TGG + chr8_1:19647021-19647040 Msa1184100:CDS 40.0%
AGAGGCAGTAACATATACCA+AGG - chr8_1:19647331-19647350 None:intergenic 40.0%
TATTCGGAGTACATGCAGTT+AGG + chr8_1:19647624-19647643 Msa1184100:intron 40.0%
! GGTTGCCATTTAATCAAGAC+CGG - chr8_1:19647772-19647791 None:intergenic 40.0%
TGGCAACCGATGTTCTTAAT+AGG + chr8_1:19647784-19647803 Msa1184100:intron 40.0%
GAAATAGGTTTCCATGCAGT+AGG - chr8_1:19647825-19647844 None:intergenic 40.0%
AGTTCATAGACCAGAAAGCT+TGG + chr8_1:19648152-19648171 Msa1184100:CDS 40.0%
! TTGCAGAGATGATGGTGTTA+AGG - chr8_1:19648228-19648247 None:intergenic 40.0%
!!! AGGGATTTTTTCTGGTCCTT+TGG - chr8_1:19648253-19648272 None:intergenic 40.0%
!!! GTTCCTTGAGGGATTTTTTC+TGG - chr8_1:19648261-19648280 None:intergenic 40.0%
ATCTGCAGTCTCAAGAACTT+CGG - chr8_1:19648374-19648393 None:intergenic 40.0%
TTGACCGTGATTCTCGAATT+TGG - chr8_1:19648627-19648646 None:intergenic 40.0%
! ATTTAGGGCTGTGGAAAGAT+TGG + chr8_1:19648735-19648754 Msa1184100:intron 40.0%
! TTTTCTTCTTTGTTCCCAGC+TGG + chr8_1:19648770-19648789 Msa1184100:intron 40.0%
! TTTTGCTGCATAATCCAGCT+GGG - chr8_1:19648787-19648806 None:intergenic 40.0%
TAGTACTTCTCTGCATCTGA+GGG - chr8_1:19648819-19648838 None:intergenic 40.0%
ATAGTACTTCTCTGCATCTG+AGG - chr8_1:19648820-19648839 None:intergenic 40.0%
CTCTACAATGGCTCAAGCTA+TGG + chr8_1:19646924-19646943 Msa1184100:exon 45.0%
! TCATCTCAAGCTGTGATGGA+AGG + chr8_1:19646976-19646995 Msa1184100:CDS 45.0%
GAAGGAAGTCTTCAACTGAG+TGG + chr8_1:19646994-19647013 Msa1184100:CDS 45.0%
GCATGGTAGCAACAGTAACA+AGG + chr8_1:19647038-19647057 Msa1184100:CDS 45.0%
!! TGGTCTTGTTGCAACTGGTT+TGG + chr8_1:19647128-19647147 Msa1184100:CDS 45.0%
TGTTCAAGCTGTTCTTGCTG+AGG + chr8_1:19647164-19647183 Msa1184100:CDS 45.0%
GAGGCCATTCCCATTAAAGT+TGG + chr8_1:19647183-19647202 Msa1184100:CDS 45.0%
GCCATTCCCATTAAAGTTGG+TGG + chr8_1:19647186-19647205 Msa1184100:CDS 45.0%
GCCACCAACTTTAATGGGAA+TGG - chr8_1:19647190-19647209 None:intergenic 45.0%
ACACACACACACACACAACA+TGG + chr8_1:19647575-19647594 Msa1184100:intron 45.0%
CTGCAATTTCTTGGACCGTT+CGG - chr8_1:19647698-19647717 None:intergenic 45.0%
!! CAGTTGGTGTCAATGGTTGA+AGG - chr8_1:19648081-19648100 None:intergenic 45.0%
TCAACCATTGACACCAACTG+AGG + chr8_1:19648081-19648100 Msa1184100:CDS 45.0%
GAAGATATGGCCAAGCTTTC+TGG - chr8_1:19648165-19648184 None:intergenic 45.0%
AATGATCTACGTCTCAGAGC+TGG + chr8_1:19648187-19648206 Msa1184100:CDS 45.0%
!! CTTTGGCTTTGCAGAGATGA+TGG - chr8_1:19648236-19648255 None:intergenic 45.0%
CATCATCTCTGCAAAGCCAA+AGG + chr8_1:19648234-19648253 Msa1184100:CDS 45.0%
GGACCAGAAAAAATCCCTCA+AGG + chr8_1:19648255-19648274 Msa1184100:CDS 45.0%
AAATCCCTCAAGGAACTCAC+CGG + chr8_1:19648265-19648284 Msa1184100:CDS 45.0%
GATATCCTGGAAGAGCTTTC+CGG - chr8_1:19648287-19648306 None:intergenic 45.0%
TCATGCAGTCAGCACATTTG+TGG + chr8_1:19648435-19648454 Msa1184100:intron 45.0%
GTCAGCACATTTGTGGTTGA+TGG + chr8_1:19648442-19648461 Msa1184100:intron 45.0%
!! TGTGGTTGATGGATCGAGAT+TGG + chr8_1:19648453-19648472 Msa1184100:intron 45.0%
TCTCGAATTTGGATTGCCTG+CGG - chr8_1:19648616-19648635 None:intergenic 45.0%
! CTTTTGCTGCATAATCCAGC+TGG - chr8_1:19648788-19648807 None:intergenic 45.0%
AGTACTTCTCTGCATCTGAG+GGG - chr8_1:19648818-19648837 None:intergenic 45.0%
CTCTACAATGGCTCAAGCTA+TGG + chr8_1:19646924-19646943 Msa1184100:exon 45.0%
! TCATCTCAAGCTGTGATGGA+AGG + chr8_1:19646976-19646995 Msa1184100:CDS 45.0%
GAAGGAAGTCTTCAACTGAG+TGG + chr8_1:19646994-19647013 Msa1184100:CDS 45.0%
GCATGGTAGCAACAGTAACA+AGG + chr8_1:19647038-19647057 Msa1184100:CDS 45.0%
!! TGGTCTTGTTGCAACTGGTT+TGG + chr8_1:19647128-19647147 Msa1184100:CDS 45.0%
TGTTCAAGCTGTTCTTGCTG+AGG + chr8_1:19647164-19647183 Msa1184100:CDS 45.0%
GAGGCCATTCCCATTAAAGT+TGG + chr8_1:19647183-19647202 Msa1184100:CDS 45.0%
GCCATTCCCATTAAAGTTGG+TGG + chr8_1:19647186-19647205 Msa1184100:CDS 45.0%
GCCACCAACTTTAATGGGAA+TGG - chr8_1:19647190-19647209 None:intergenic 45.0%
ACACACACACACACACAACA+TGG + chr8_1:19647575-19647594 Msa1184100:intron 45.0%
CTGCAATTTCTTGGACCGTT+CGG - chr8_1:19647698-19647717 None:intergenic 45.0%
!! CAGTTGGTGTCAATGGTTGA+AGG - chr8_1:19648081-19648100 None:intergenic 45.0%
TCAACCATTGACACCAACTG+AGG + chr8_1:19648081-19648100 Msa1184100:CDS 45.0%
GAAGATATGGCCAAGCTTTC+TGG - chr8_1:19648165-19648184 None:intergenic 45.0%
AATGATCTACGTCTCAGAGC+TGG + chr8_1:19648187-19648206 Msa1184100:CDS 45.0%
!! CTTTGGCTTTGCAGAGATGA+TGG - chr8_1:19648236-19648255 None:intergenic 45.0%
CATCATCTCTGCAAAGCCAA+AGG + chr8_1:19648234-19648253 Msa1184100:CDS 45.0%
GGACCAGAAAAAATCCCTCA+AGG + chr8_1:19648255-19648274 Msa1184100:CDS 45.0%
AAATCCCTCAAGGAACTCAC+CGG + chr8_1:19648265-19648284 Msa1184100:CDS 45.0%
GATATCCTGGAAGAGCTTTC+CGG - chr8_1:19648287-19648306 None:intergenic 45.0%
TCATGCAGTCAGCACATTTG+TGG + chr8_1:19648435-19648454 Msa1184100:intron 45.0%
GTCAGCACATTTGTGGTTGA+TGG + chr8_1:19648442-19648461 Msa1184100:intron 45.0%
!! TGTGGTTGATGGATCGAGAT+TGG + chr8_1:19648453-19648472 Msa1184100:intron 45.0%
TCTCGAATTTGGATTGCCTG+CGG - chr8_1:19648616-19648635 None:intergenic 45.0%
! CTTTTGCTGCATAATCCAGC+TGG - chr8_1:19648788-19648807 None:intergenic 45.0%
AGTACTTCTCTGCATCTGAG+GGG - chr8_1:19648818-19648837 None:intergenic 45.0%
GGCTCAAGCTATGGCATCAA+TGG + chr8_1:19646933-19646952 Msa1184100:CDS 50.0%
CAAGCTATGGCATCAATGGC+TGG + chr8_1:19646937-19646956 Msa1184100:CDS 50.0%
! TCAATGGCTGGTTGCTTACG+TGG + chr8_1:19646949-19646968 Msa1184100:CDS 50.0%
AGTAGCAGAAGAGCAGTGCT+TGG + chr8_1:19647108-19647127 Msa1184100:CDS 50.0%
!! GTGCTTGGTCTTGTTGCAAC+TGG + chr8_1:19647123-19647142 Msa1184100:CDS 50.0%
GGAGGGCCACCAACTTTAAT+GGG - chr8_1:19647195-19647214 None:intergenic 50.0%
AGGAGGGCCACCAACTTTAA+TGG - chr8_1:19647196-19647215 None:intergenic 50.0%
TACTTACGAAGGCCACCAGA+AGG - chr8_1:19647222-19647241 None:intergenic 50.0%
TACGGTGAATCCCTACTGCA+TGG + chr8_1:19647811-19647830 Msa1184100:intron 50.0%
GTCTCAGAGCTGGCTATCTT+CGG + chr8_1:19648197-19648216 Msa1184100:CDS 50.0%
CTTTCCGGTGAGTTCCTTGA+GGG - chr8_1:19648272-19648291 None:intergenic 50.0%
GGCTCAAGCTATGGCATCAA+TGG + chr8_1:19646933-19646952 Msa1184100:CDS 50.0%
CAAGCTATGGCATCAATGGC+TGG + chr8_1:19646937-19646956 Msa1184100:CDS 50.0%
! TCAATGGCTGGTTGCTTACG+TGG + chr8_1:19646949-19646968 Msa1184100:CDS 50.0%
AGTAGCAGAAGAGCAGTGCT+TGG + chr8_1:19647108-19647127 Msa1184100:CDS 50.0%
!! GTGCTTGGTCTTGTTGCAAC+TGG + chr8_1:19647123-19647142 Msa1184100:CDS 50.0%
GGAGGGCCACCAACTTTAAT+GGG - chr8_1:19647195-19647214 None:intergenic 50.0%
AGGAGGGCCACCAACTTTAA+TGG - chr8_1:19647196-19647215 None:intergenic 50.0%
TACTTACGAAGGCCACCAGA+AGG - chr8_1:19647222-19647241 None:intergenic 50.0%
TACGGTGAATCCCTACTGCA+TGG + chr8_1:19647811-19647830 Msa1184100:intron 50.0%
GTCTCAGAGCTGGCTATCTT+CGG + chr8_1:19648197-19648216 Msa1184100:CDS 50.0%
CTTTCCGGTGAGTTCCTTGA+GGG - chr8_1:19648272-19648291 None:intergenic 50.0%
TTACGAAGGCCACCAGAAGG+TGG - chr8_1:19647219-19647238 None:intergenic 55.0%
!! GCTGCCTCAGTTGGTGTCAA+TGG - chr8_1:19648088-19648107 None:intergenic 55.0%
TGAGGCAGCTGCAAGAGCTA+AGG + chr8_1:19648099-19648118 Msa1184100:CDS 55.0%
GCTTTCCGGTGAGTTCCTTG+AGG - chr8_1:19648273-19648292 None:intergenic 55.0%
ACTCACCGGAAAGCTCTTCC+AGG + chr8_1:19648279-19648298 Msa1184100:CDS 55.0%
!! GTGCTGACTGCATGAATGCG+TGG - chr8_1:19648430-19648449 None:intergenic 55.0%
TGCATGAGATTGCTAGCCGC+AGG + chr8_1:19648597-19648616 Msa1184100:intron 55.0%
TCTCAATTGCGGTCACGCTG+TGG + chr8_1:19648662-19648681 Msa1184100:intron 55.0%
ATCGGATTACGCAGCACCGT+GGG - chr8_1:19648703-19648722 None:intergenic 55.0%
TATCGGATTACGCAGCACCG+TGG - chr8_1:19648704-19648723 None:intergenic 55.0%
TTACGAAGGCCACCAGAAGG+TGG - chr8_1:19647219-19647238 None:intergenic 55.0%
!! GCTGCCTCAGTTGGTGTCAA+TGG - chr8_1:19648088-19648107 None:intergenic 55.0%
TGAGGCAGCTGCAAGAGCTA+AGG + chr8_1:19648099-19648118 Msa1184100:CDS 55.0%
GCTTTCCGGTGAGTTCCTTG+AGG - chr8_1:19648273-19648292 None:intergenic 55.0%
ACTCACCGGAAAGCTCTTCC+AGG + chr8_1:19648279-19648298 Msa1184100:CDS 55.0%
!! GTGCTGACTGCATGAATGCG+TGG - chr8_1:19648430-19648449 None:intergenic 55.0%
TGCATGAGATTGCTAGCCGC+AGG + chr8_1:19648597-19648616 Msa1184100:intron 55.0%
TCTCAATTGCGGTCACGCTG+TGG + chr8_1:19648662-19648681 Msa1184100:intron 55.0%
ATCGGATTACGCAGCACCGT+GGG - chr8_1:19648703-19648722 None:intergenic 55.0%
TATCGGATTACGCAGCACCG+TGG - chr8_1:19648704-19648723 None:intergenic 55.0%
GCTCTTGCAGCTGCCTCAGT+TGG - chr8_1:19648097-19648116 None:intergenic 60.0%
GCTCTTGCAGCTGCCTCAGT+TGG - chr8_1:19648097-19648116 None:intergenic 60.0%
GGCCACCAGAAGGTGGAGGA+GGG - chr8_1:19647212-19647231 None:intergenic 65.0%
AGGCCACCAGAAGGTGGAGG+AGG - chr8_1:19647213-19647232 None:intergenic 65.0%
CGAAGGCCACCAGAAGGTGG+AGG - chr8_1:19647216-19647235 None:intergenic 65.0%
GGCCACCAGAAGGTGGAGGA+GGG - chr8_1:19647212-19647231 None:intergenic 65.0%
AGGCCACCAGAAGGTGGAGG+AGG - chr8_1:19647213-19647232 None:intergenic 65.0%
CGAAGGCCACCAGAAGGTGG+AGG - chr8_1:19647216-19647235 None:intergenic 65.0%
GGTGGCCCTCCTCCACCTTC+TGG + chr8_1:19647204-19647223 Msa1184100:CDS 70.0%
GGCCCTCCTCCACCTTCTGG+TGG + chr8_1:19647207-19647226 Msa1184100:CDS 70.0%
GGTGGCCCTCCTCCACCTTC+TGG + chr8_1:19647204-19647223 Msa1184100:CDS 70.0%
GGCCCTCCTCCACCTTCTGG+TGG + chr8_1:19647207-19647226 Msa1184100:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 19646796 19649189 19646796 ID=Msa1184100;Name=Msa1184100
chr8_1 mRNA 19646796 19649189 19646796 ID=Msa1184100-mRNA-1;Parent=Msa1184100;Name=Msa1184100-mRNA-1;_AED=0.08;_eAED=0.08;_QI=135|1|1|1|1|1|3|302|232
chr8_1 exon 19646796 19647234 19646796 ID=Msa1184100-mRNA-1:exon:7590;Parent=Msa1184100-mRNA-1
chr8_1 exon 19648017 19648312 19648017 ID=Msa1184100-mRNA-1:exon:7591;Parent=Msa1184100-mRNA-1
chr8_1 exon 19648789 19649189 19648789 ID=Msa1184100-mRNA-1:exon:7592;Parent=Msa1184100-mRNA-1
chr8_1 five_prime_UTR 19646796 19646930 19646796 ID=Msa1184100-mRNA-1:five_prime_utr;Parent=Msa1184100-mRNA-1
chr8_1 CDS 19646931 19647234 19646931 ID=Msa1184100-mRNA-1:cds;Parent=Msa1184100-mRNA-1
chr8_1 CDS 19648017 19648312 19648017 ID=Msa1184100-mRNA-1:cds;Parent=Msa1184100-mRNA-1
chr8_1 CDS 19648789 19648887 19648789 ID=Msa1184100-mRNA-1:cds;Parent=Msa1184100-mRNA-1
chr8_1 three_prime_UTR 19648888 19649189 19648888 ID=Msa1184100-mRNA-1:three_prime_utr;Parent=Msa1184100-mRNA-1
Gene Sequence

>Msa1184100

ATGGCTCAAGCTATGGCATCAATGGCTGGTTGCTTACGTGGTTCATCATCTCAAGCTGTGATGGAAGGAAGTCTTCAACTGAGTGGATCAAACAGGTTGAACATGTTGCATGGTAGCAACAGTAACAAGGTTACACGTTCATCAGTGACAGTTGTTAAAGCACAACAACAACAGGAAAGTAGCAGAAGAGCAGTGCTTGGTCTTGTTGCAACTGGTTTGGTTTCTTCCTCTTTTGTTCAAGCTGTTCTTGCTGAGGCCATTCCCATTAAAGTTGGTGGCCCTCCTCCACCTTCTGGTGGCCTTCCTGGAACACTGAACTCAGATGAAGCAAGAGACCTTAACCTACCATTGAAAGAAAGGTTCTACCTTCAACCATTGACACCAACTGAGGCAGCTGCAAGAGCTAAGGAGTCAGCAAAAGAAATTGTTGCTGCTAAGAAGTTCATAGACCAGAAAGCTTGGCCATATCTTCAGAATGATCTACGTCTCAGAGCTGGCTATCTTCGGTATGACCTTAACACCATCATCTCTGCAAAGCCAAAGGACCAGAAAAAATCCCTCAAGGAACTCACCGGAAAGCTCTTCCAGGATATCGACAATCTGGATTATGCAGCAAAAGTTAAGAGCCCCTCAGATGCAGAGAAGTACTATGCTATAGCTGTATCTACTCTGAATGATGTTCTTAGCAAAATTGGTTAA

Protein sequence

>Msa1184100

MAQAMASMAGCLRGSSSQAVMEGSLQLSGSNRLNMLHGSNSNKVTRSSVTVVKAQQQQESSRRAVLGLVATGLVSSSFVQAVLAEAIPIKVGGPPPPSGGLPGTLNSDEARDLNLPLKERFYLQPLTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTIISAKPKDQKKSLKELTGKLFQDIDNLDYAAKVKSPSDAEKYYAIAVSTLNDVLSKIG*