AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436250 MtrunA17_Chr3g0142181 96.345 383 9 1 1 383 5 382 0.0 737
Msa0436250 MtrunA17_Chr4g0024991 61.264 364 137 2 6 369 6 365 6.22e-143 410
Msa0436250 MtrunA17_Chr4g0075171 49.724 362 175 3 16 376 12 367 1.66e-113 335
Msa0436250 MtrunA17_Chr4g0056691 42.249 329 177 6 54 378 189 508 2.12e-78 251
Msa0436250 MtrunA17_Chr6g0462881 41.718 326 177 6 56 378 233 548 1.21e-75 245
Msa0436250 MtrunA17_Chr6g0462891 41.104 326 179 6 56 378 242 557 9.54e-75 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436250 AT1G62280.1 56.764 377 149 7 1 377 1 363 3.53e-144 414
Msa0436250 AT1G62262.1 56.065 371 142 5 1 371 1 350 3.73e-142 409
Msa0436250 AT4G27970.3 42.025 326 172 7 58 378 1 314 5.29e-76 240
Msa0436250 AT4G27970.5 42.025 326 172 7 58 378 1 314 5.29e-76 240
Msa0436250 AT5G24030.1 41.463 328 175 7 56 378 263 578 1.35e-74 244
Msa0436250 AT4G27970.1 41.768 328 174 7 56 378 148 463 1.39e-74 241
Msa0436250 AT4G27970.6 41.768 328 174 7 56 378 148 463 1.39e-74 241
Msa0436250 AT1G12480.1 42.727 330 175 7 54 378 191 511 1.42e-70 231
Msa0436250 AT5G24030.2 43.651 252 130 5 56 305 263 504 2.80e-60 203
Msa0436250 AT4G27970.4 44.309 246 125 5 56 299 148 383 5.51e-58 194
Msa0436250 AT4G27970.2 44.309 246 125 5 56 299 148 383 5.51e-58 194

Find 73 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTACTTATTTAATTCTA+TGG 0.220811 3_2:+89680518 Msa0436250:CDS
ATTAGGGATGGTGCATTATT+TGG 0.229252 3_2:+89680729 Msa0436250:CDS
TTTATCGGTAATAGGGAATT+TGG 0.236056 3_2:+89680648 Msa0436250:CDS
ACAAGTCATTTATCGGTAAT+AGG 0.252404 3_2:+89680640 Msa0436250:CDS
AGAGAATGAGCATTAGAATA+TGG 0.254966 3_2:-89682383 None:intergenic
ACTTGTTAAGGATCTTATTA+AGG 0.267921 3_2:-89680164 None:intergenic
GACAAGCTCAATGTTTGATT+TGG 0.274170 3_2:-89680074 None:intergenic
AATTAAATAAGTAATGGTTT+TGG 0.294154 3_2:-89680512 None:intergenic
TGTTTGATTTGGAAATTTCT+TGG 0.315791 3_2:-89680063 None:intergenic
GTTGAATTAAACAGGTTTGC+AGG 0.323138 3_2:+89682238 Msa0436250:intron
GATTTGCTTGTGTCGTTTGT+TGG 0.331802 3_2:-89680271 None:intergenic
TTCTTGTTCTTTGCAGCACC+TGG 0.340908 3_2:+89680823 Msa0436250:CDS
TTTGCAATGGGATCGTTATC+TGG 0.342866 3_2:-89682474 None:intergenic
GTTCTCGACGTTAAAATTTA+CGG 0.348977 3_2:+89680565 Msa0436250:CDS
CCAGTGACATGAAGAGGAAT+AGG 0.350256 3_2:-89680918 None:intergenic
AGCACCTGGTGTGGCTAGTC+TGG 0.355273 3_2:+89680837 Msa0436250:CDS
CAAGTCATTTATCGGTAATA+GGG 0.357344 3_2:+89680641 Msa0436250:CDS
AGCGCAAGCTGCAGCAGAAA+TGG 0.373631 3_2:+89680675 Msa0436250:CDS
GCCATAGCAAGTACGGTAAC+AGG 0.385140 3_2:-89682321 None:intergenic
GCAAAGAACAAGAAGAAAAC+TGG 0.389582 3_2:-89680814 None:intergenic
TTCAGAATTAGCCTCTCATT+TGG 0.402241 3_2:+89680214 Msa0436250:CDS
TTCTCATAGATCTCTTGAAT+AGG 0.405405 3_2:-89682266 None:intergenic
TTGGTGGCCAAGCATTACTA+TGG 0.413564 3_2:+89680233 Msa0436250:CDS
CTGGTGTGGCTAGTCTGGCT+TGG 0.416273 3_2:+89680842 Msa0436250:CDS
TACTTATTTAATTCTATGGT+GGG 0.421001 3_2:+89680522 Msa0436250:CDS
TACGGTCAGTGGTTTACTAA+AGG 0.421425 3_2:+89680583 Msa0436250:CDS
TCTCATAGATCTCTTGAATA+GGG 0.431380 3_2:-89682265 None:intergenic
ACGGTCAGTGGTTTACTAAA+GGG 0.432203 3_2:+89680584 Msa0436250:CDS
GTTTGATTTGGAAATTTCTT+GGG 0.435748 3_2:-89680062 None:intergenic
TATTCTAATGCTCATTCTCT+TGG 0.436966 3_2:+89682386 Msa0436250:CDS
TCCTGTTACCGTACTTGCTA+TGG 0.437754 3_2:+89682320 Msa0436250:CDS
GAATCCGACAAGTCATTTAT+CGG 0.442075 3_2:+89680633 Msa0436250:CDS
CTGGCTTGGGAATCTATTGT+TGG 0.443643 3_2:+89680856 Msa0436250:CDS
TGGTGTGGCTAGTCTGGCTT+GGG 0.445650 3_2:+89680843 Msa0436250:CDS
CCTATTCCTCTTCATGTCAC+TGG 0.453775 3_2:+89680918 Msa0436250:CDS
ATTACCGATAAATGACTTGT+CGG 0.460048 3_2:-89680637 None:intergenic
GAGAATGAGCATTAGAATAT+GGG 0.464878 3_2:-89682382 None:intergenic
GCGCAAGCTGCAGCAGAAAT+GGG 0.477434 3_2:+89680676 Msa0436250:CDS
ATCGTCTTCCTGCGTTGTTA+AGG 0.478539 3_2:+89680791 Msa0436250:CDS
ACACTTTATCAAAGGTTGTC+TGG 0.479220 3_2:+89680763 Msa0436250:CDS
TCGGTAATAGGGAATTTGGT+TGG 0.484237 3_2:+89680652 Msa0436250:CDS
CCATAGAATTAAATAAGTAA+TGG 0.499411 3_2:-89680518 None:intergenic
AACAATGAGGATGTTTGCAA+TGG 0.505274 3_2:-89682487 None:intergenic
AGAATTAGCCTCTCATTTGG+TGG 0.507666 3_2:+89680217 Msa0436250:CDS
ACGTTAAAATTTACGGTCAG+TGG 0.514110 3_2:+89680572 Msa0436250:CDS
ATAGATCTCTTGAATAGGGC+TGG 0.514231 3_2:-89682261 None:intergenic
CAGTGACATGAAGAGGAATA+GGG 0.514535 3_2:-89680917 None:intergenic
ACAATGAGGATGTTTGCAAT+GGG 0.520555 3_2:-89682486 None:intergenic
TGTAGAAGCCATAGCAAGTA+CGG 0.530020 3_2:-89682328 None:intergenic
AATAGAAACCATGAAATCCA+TGG 0.536211 3_2:-89680463 None:intergenic
TTACTTATTTAATTCTATGG+TGG 0.536757 3_2:+89680521 Msa0436250:CDS
AAGGTTTAATGTTGCATGGT+GGG 0.544626 3_2:+89682287 Msa0436250:CDS
TATATACCAGTGACATGAAG+AGG 0.567022 3_2:-89680924 None:intergenic
AAGCTGCAGCAGAAATGGGT+TGG 0.584214 3_2:+89680680 Msa0436250:CDS
AGCAAGTACGGTAACAGGAA+AGG 0.591295 3_2:-89682316 None:intergenic
TGTTTGTGACACTTTATCAA+AGG 0.592867 3_2:+89680755 Msa0436250:CDS
TATTCAAGAGATCTATGAGA+AGG 0.595617 3_2:+89682268 Msa0436250:CDS
TTTAACGTCGAGAACAACCA+CGG 0.596366 3_2:-89680557 None:intergenic
GTTCTTTGCAGCACCTGGTG+TGG 0.596453 3_2:+89680828 Msa0436250:CDS
CAAGCCAGACTAGCCACACC+AGG 0.597287 3_2:-89680841 None:intergenic
AGTACTATGAAAACAGAGGA+AGG 0.598002 3_2:-89680316 None:intergenic
GAAGAATTCTTACACCATGT+AGG 0.606055 3_2:+89680421 Msa0436250:CDS
AGTGGTTTACTAAAGGGAAG+AGG 0.608283 3_2:+89680590 Msa0436250:CDS
AATAAATGAATTAAACAATG+AGG 0.610002 3_2:-89682500 None:intergenic
AATTATGCACAACAAGTCAA+AGG 0.620636 3_2:+89682351 Msa0436250:CDS
TGAGAAGGTTTAATGTTGCA+TGG 0.624928 3_2:+89682283 Msa0436250:CDS
ATGCTTGGCCACCAAATGAG+AGG 0.628009 3_2:-89680225 None:intergenic
AAAGATAGTTAACTCCTACA+TGG 0.643665 3_2:-89680435 None:intergenic
TTAACGTCGAGAACAACCAC+GGG 0.646771 3_2:-89680556 None:intergenic
CTTTATCAAAGGTTGTCTGG+TGG 0.678296 3_2:+89680766 Msa0436250:CDS
AAAACTGGCCTTAACAACGC+AGG 0.680269 3_2:-89680799 None:intergenic
GAAGGTTTAATGTTGCATGG+TGG 0.712532 3_2:+89682286 Msa0436250:CDS
CCATAGTACTATGAAAACAG+AGG 0.718627 3_2:-89680320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAATATTTCAAAATTG+AGG + chr3_2:89681273-89681292 Msa0436250:intron 10.0%
!!! AATTAGTATTTTGAATTATA+TGG + chr3_2:89681980-89681999 Msa0436250:intron 10.0%
!! ATGTAACTTAATTAATTATT+AGG - chr3_2:89682173-89682192 None:intergenic 10.0%
!! TAAATATTAATCAATATTTC+AGG - chr3_2:89682212-89682231 None:intergenic 10.0%
!!! TTTTTTTAGTATACTTGTTA+AGG - chr3_2:89680179-89680198 None:intergenic 15.0%
!!! ATGTTTATTTTTCTTTAAGA+TGG + chr3_2:89680393-89680412 Msa0436250:CDS 15.0%
!!! ATTAAATAAGTAATGGTTTT+GGG - chr3_2:89680514-89680533 None:intergenic 15.0%
!!! AATTAAATAAGTAATGGTTT+TGG - chr3_2:89680515-89680534 None:intergenic 15.0%
!!! AATAAATGATGATTTTGTAA+AGG - chr3_2:89681022-89681041 None:intergenic 15.0%
!! AACAATTTATAATATAGTCA+TGG + chr3_2:89681138-89681157 Msa0436250:intron 15.0%
!!! TATAAAGTCACTTATAATTT+TGG + chr3_2:89681170-89681189 Msa0436250:intron 15.0%
!! AATAAATCATTATCTTCATA+GGG - chr3_2:89681253-89681272 None:intergenic 15.0%
!! AAATAAATCATTATCTTCAT+AGG - chr3_2:89681254-89681273 None:intergenic 15.0%
!! TTGTACCAAAAAAAAAAATA+AGG - chr3_2:89681820-89681839 None:intergenic 15.0%
!!! ATTTTTTTTTTTGGTACAAA+TGG + chr3_2:89681821-89681840 Msa0436250:intron 15.0%
!! TAATTTATGTTGAATTAAAC+AGG + chr3_2:89682230-89682249 Msa0436250:intron 15.0%
!! AGAAAAATAAACATCTTAAG+AGG - chr3_2:89680387-89680406 None:intergenic 20.0%
!! CCATAGAATTAAATAAGTAA+TGG - chr3_2:89680521-89680540 None:intergenic 20.0%
!! CCATTACTTATTTAATTCTA+TGG + chr3_2:89680518-89680537 Msa0436250:CDS 20.0%
!! TTACTTATTTAATTCTATGG+TGG + chr3_2:89680521-89680540 Msa0436250:CDS 20.0%
!! TACTTATTTAATTCTATGGT+GGG + chr3_2:89680522-89680541 Msa0436250:CDS 20.0%
!! ATCATCATTTATTAATGATG+TGG + chr3_2:89681029-89681048 Msa0436250:intron 20.0%
!!! TTTTACAAAGTATGATAGAA+AGG + chr3_2:89681085-89681104 Msa0436250:intron 20.0%
!! AACAACTACAGTTTAAATTA+GGG - chr3_2:89681205-89681224 None:intergenic 20.0%
!!! TTTTACAAAAAAATTCTGGT+AGG + chr3_2:89681685-89681704 Msa0436250:intron 20.0%
!! CATGTACTTATAAATTGATA+GGG - chr3_2:89681732-89681751 None:intergenic 20.0%
!!! AAGGTCCTTATTTTTTTTTT+TGG + chr3_2:89681812-89681831 Msa0436250:intron 20.0%
!! AAATTCAAACTTATCAATTG+AGG - chr3_2:89682027-89682046 None:intergenic 20.0%
!!! GTTTGATTTGGAAATTTCTT+GGG - chr3_2:89680065-89680084 None:intergenic 25.0%
!!! TGTTTGATTTGGAAATTTCT+TGG - chr3_2:89680066-89680085 None:intergenic 25.0%
!! ACTTGTTAAGGATCTTATTA+AGG - chr3_2:89680167-89680186 None:intergenic 25.0%
! ATACTAAAAAAACTTCATGC+AGG + chr3_2:89680187-89680206 Msa0436250:CDS 25.0%
! CAACAACTACAGTTTAAATT+AGG - chr3_2:89681206-89681225 None:intergenic 25.0%
! TCAACAAAGTTGTCATTAAA+TGG - chr3_2:89681489-89681508 None:intergenic 25.0%
! TCATTTCTATTAGACAAAAC+AGG + chr3_2:89681641-89681660 Msa0436250:intron 25.0%
!! GGCTTTTTACAAAAAAATTC+TGG + chr3_2:89681681-89681700 Msa0436250:intron 25.0%
! GCATGTACTTATAAATTGAT+AGG - chr3_2:89681733-89681752 None:intergenic 25.0%
!!! TTTTTTTGGTACAAATGGAA+AGG + chr3_2:89681826-89681845 Msa0436250:intron 25.0%
! CAAGTAACTGTCAATTAATA+AGG - chr3_2:89681853-89681872 None:intergenic 25.0%
! TTGATAAGTTTGAATTTACC+CGG + chr3_2:89682030-89682049 Msa0436250:intron 25.0%
!!! TAGAGATTAATCTTTAGAAC+CGG - chr3_2:89682052-89682071 None:intergenic 25.0%
! TTAATCTCTACATAGAGAAT+AGG + chr3_2:89682062-89682081 Msa0436250:intron 25.0%
!!! AGGTTGATTTTTGGTTATTG+TGG - chr3_2:89680123-89680142 None:intergenic 30.0%
! ATGTTTTCCATAGTAATGCT+TGG - chr3_2:89680243-89680262 None:intergenic 30.0%
AAAGATAGTTAACTCCTACA+TGG - chr3_2:89680438-89680457 None:intergenic 30.0%
AATAGAAACCATGAAATCCA+TGG - chr3_2:89680466-89680485 None:intergenic 30.0%
GTTCTCGACGTTAAAATTTA+CGG + chr3_2:89680565-89680584 Msa0436250:CDS 30.0%
! ATTACCGATAAATGACTTGT+CGG - chr3_2:89680640-89680659 None:intergenic 30.0%
ACAAGTCATTTATCGGTAAT+AGG + chr3_2:89680640-89680659 Msa0436250:CDS 30.0%
CAAGTCATTTATCGGTAATA+GGG + chr3_2:89680641-89680660 Msa0436250:CDS 30.0%
TTTATCGGTAATAGGGAATT+TGG + chr3_2:89680648-89680667 Msa0436250:CDS 30.0%
!! CTGTGTGTTTGTTTTCATTA+GGG + chr3_2:89680713-89680732 Msa0436250:CDS 30.0%
TGTTTGTGACACTTTATCAA+AGG + chr3_2:89680755-89680774 Msa0436250:CDS 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3_2:89681540-89681559 Msa0436250:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - chr3_2:89681612-89681631 None:intergenic 30.0%
TAGGGACATTCTATATTGTA+CGG - chr3_2:89681714-89681733 None:intergenic 30.0%
! CTTGATTTTGTGCTGTAATT+TGG + chr3_2:89681775-89681794 Msa0436250:intron 30.0%
TAGATAACATGACTTGACAT+TGG - chr3_2:89681932-89681951 None:intergenic 30.0%
ACTTATCAATTGAGGTTAAG+TGG - chr3_2:89682019-89682038 None:intergenic 30.0%
!! AGAGATTAATCTTTAGAACC+GGG - chr3_2:89682051-89682070 None:intergenic 30.0%
TCTCATAGATCTCTTGAATA+GGG - chr3_2:89682268-89682287 None:intergenic 30.0%
TTCTCATAGATCTCTTGAAT+AGG - chr3_2:89682269-89682288 None:intergenic 30.0%
TATTCAAGAGATCTATGAGA+AGG + chr3_2:89682268-89682287 Msa0436250:CDS 30.0%
AATTATGCACAACAAGTCAA+AGG + chr3_2:89682351-89682370 Msa0436250:CDS 30.0%
GAGAATGAGCATTAGAATAT+GGG - chr3_2:89682385-89682404 None:intergenic 30.0%
AGAGAATGAGCATTAGAATA+TGG - chr3_2:89682386-89682405 None:intergenic 30.0%
TATTCTAATGCTCATTCTCT+TGG + chr3_2:89682386-89682405 Msa0436250:CDS 30.0%
GACAAGCTCAATGTTTGATT+TGG - chr3_2:89680077-89680096 None:intergenic 35.0%
!! CCATTAACGAGGTTGATTTT+TGG - chr3_2:89680132-89680151 None:intergenic 35.0%
CCAAAAATCAACCTCGTTAA+TGG + chr3_2:89680129-89680148 Msa0436250:CDS 35.0%
! TTCAGAATTAGCCTCTCATT+TGG + chr3_2:89680214-89680233 Msa0436250:CDS 35.0%
AGTACTATGAAAACAGAGGA+AGG - chr3_2:89680319-89680338 None:intergenic 35.0%
CCATAGTACTATGAAAACAG+AGG - chr3_2:89680323-89680342 None:intergenic 35.0%
! CCTCTGTTTTCATAGTACTA+TGG + chr3_2:89680320-89680339 Msa0436250:CDS 35.0%
GAAGAATTCTTACACCATGT+AGG + chr3_2:89680421-89680440 Msa0436250:CDS 35.0%
! TTAACTATCTTTTCGCTCCA+TGG + chr3_2:89680446-89680465 Msa0436250:CDS 35.0%
!!! AATTCTATGGTGGGTTTTCA+CGG + chr3_2:89680531-89680550 Msa0436250:CDS 35.0%
ACGTTAAAATTTACGGTCAG+TGG + chr3_2:89680572-89680591 Msa0436250:CDS 35.0%
!!! GAAGAGGTCATTTTTAACGA+CGG + chr3_2:89680606-89680625 Msa0436250:CDS 35.0%
GAATCCGACAAGTCATTTAT+CGG + chr3_2:89680633-89680652 Msa0436250:CDS 35.0%
!! GCTGTGTGTTTGTTTTCATT+AGG + chr3_2:89680712-89680731 Msa0436250:CDS 35.0%
!! GTGTTTGTTTTCATTAGGGA+TGG + chr3_2:89680717-89680736 Msa0436250:CDS 35.0%
ATTAGGGATGGTGCATTATT+TGG + chr3_2:89680729-89680748 Msa0436250:CDS 35.0%
ACACTTTATCAAAGGTTGTC+TGG + chr3_2:89680763-89680782 Msa0436250:CDS 35.0%
GCAAAGAACAAGAAGAAAAC+TGG - chr3_2:89680817-89680836 None:intergenic 35.0%
TATATACCAGTGACATGAAG+AGG - chr3_2:89680927-89680946 None:intergenic 35.0%
GTAAACCTTGTCATTACTTG+AGG - chr3_2:89681326-89681345 None:intergenic 35.0%
AGCAAGAAGTGAGAAAAACA+AGG - chr3_2:89681515-89681534 None:intergenic 35.0%
!! TTGTTTTTCTCACTTCTTGC+TGG + chr3_2:89681514-89681533 Msa0436250:intron 35.0%
TTCTTGCTGGTCAAAAACAA+TGG + chr3_2:89681527-89681546 Msa0436250:intron 35.0%
AGAGAGAAAAAGGAAAAGAG+AGG + chr3_2:89681550-89681569 Msa0436250:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + chr3_2:89681607-89681626 Msa0436250:intron 35.0%
!! AAAGCCAATAGTGTTGACTA+AGG - chr3_2:89681667-89681686 None:intergenic 35.0%
TGTAATTTGGACGTACAAGA+TGG + chr3_2:89681788-89681807 Msa0436250:intron 35.0%
GTTGAATTAAACAGGTTTGC+AGG + chr3_2:89682238-89682257 Msa0436250:intron 35.0%
TGAGAAGGTTTAATGTTGCA+TGG + chr3_2:89682283-89682302 Msa0436250:CDS 35.0%
AAGGTTTAATGTTGCATGGT+GGG + chr3_2:89682287-89682306 Msa0436250:CDS 35.0%
ACAATGAGGATGTTTGCAAT+GGG - chr3_2:89682489-89682508 None:intergenic 35.0%
AACAATGAGGATGTTTGCAA+TGG - chr3_2:89682490-89682509 None:intergenic 35.0%
! TCGTTTTCTGACCATTAACG+AGG - chr3_2:89680143-89680162 None:intergenic 40.0%
! AGAATTAGCCTCTCATTTGG+TGG + chr3_2:89680217-89680236 Msa0436250:CDS 40.0%
!! GATTTGCTTGTGTCGTTTGT+TGG - chr3_2:89680274-89680293 None:intergenic 40.0%
! TTTTCGCTCCATGGATTTCA+TGG + chr3_2:89680455-89680474 Msa0436250:CDS 40.0%
!!! ATGGTTTTGGGAGCTATGAA+TGG - chr3_2:89680502-89680521 None:intergenic 40.0%
TTTAACGTCGAGAACAACCA+CGG - chr3_2:89680560-89680579 None:intergenic 40.0%
TACGGTCAGTGGTTTACTAA+AGG + chr3_2:89680583-89680602 Msa0436250:CDS 40.0%
ACGGTCAGTGGTTTACTAAA+GGG + chr3_2:89680584-89680603 Msa0436250:CDS 40.0%
AGTGGTTTACTAAAGGGAAG+AGG + chr3_2:89680590-89680609 Msa0436250:CDS 40.0%
TCGGTAATAGGGAATTTGGT+TGG + chr3_2:89680652-89680671 Msa0436250:CDS 40.0%
CTTTATCAAAGGTTGTCTGG+TGG + chr3_2:89680766-89680785 Msa0436250:CDS 40.0%
!! GGACAAAAAGAAGAGCATCT+TGG - chr3_2:89680899-89680918 None:intergenic 40.0%
CAGTGACATGAAGAGGAATA+GGG - chr3_2:89680920-89680939 None:intergenic 40.0%
CTCTTCCTCAAGTAATGACA+AGG + chr3_2:89681318-89681337 Msa0436250:intron 40.0%
GTAATGACAAGGTTTACAGC+TGG + chr3_2:89681329-89681348 Msa0436250:intron 40.0%
TTTGGACGTACAAGATGGAA+AGG + chr3_2:89681793-89681812 Msa0436250:intron 40.0%
GTTGGACAGATTGTAGGAAA+AGG - chr3_2:89681908-89681927 None:intergenic 40.0%
ATTGGAGTTGGACAGATTGT+AGG - chr3_2:89681914-89681933 None:intergenic 40.0%
ACATGACTTGACATTGGAGT+TGG - chr3_2:89681926-89681945 None:intergenic 40.0%
ATAGATCTCTTGAATAGGGC+TGG - chr3_2:89682264-89682283 None:intergenic 40.0%
GAAGGTTTAATGTTGCATGG+TGG + chr3_2:89682286-89682305 Msa0436250:CDS 40.0%
TGTAGAAGCCATAGCAAGTA+CGG - chr3_2:89682331-89682350 None:intergenic 40.0%
TTTGCAATGGGATCGTTATC+TGG - chr3_2:89682477-89682496 None:intergenic 40.0%
! TTGGTGGCCAAGCATTACTA+TGG + chr3_2:89680233-89680252 Msa0436250:CDS 45.0%
TTAACGTCGAGAACAACCAC+GGG - chr3_2:89680559-89680578 None:intergenic 45.0%
ATCGTCTTCCTGCGTTGTTA+AGG + chr3_2:89680791-89680810 Msa0436250:CDS 45.0%
!! AAAACTGGCCTTAACAACGC+AGG - chr3_2:89680802-89680821 None:intergenic 45.0%
TTCTTGTTCTTTGCAGCACC+TGG + chr3_2:89680823-89680842 Msa0436250:CDS 45.0%
!! CTGGCTTGGGAATCTATTGT+TGG + chr3_2:89680856-89680875 Msa0436250:CDS 45.0%
CCAGTGACATGAAGAGGAAT+AGG - chr3_2:89680921-89680940 None:intergenic 45.0%
CCTATTCCTCTTCATGTCAC+TGG + chr3_2:89680918-89680937 Msa0436250:CDS 45.0%
CAGGCCTTAGTCAACACTAT+TGG + chr3_2:89681660-89681679 Msa0436250:intron 45.0%
AGCAAGTACGGTAACAGGAA+AGG - chr3_2:89682319-89682338 None:intergenic 45.0%
! TCCTGTTACCGTACTTGCTA+TGG + chr3_2:89682320-89682339 Msa0436250:CDS 45.0%
ATGCTTGGCCACCAAATGAG+AGG - chr3_2:89680228-89680247 None:intergenic 50.0%
AAGCTGCAGCAGAAATGGGT+TGG + chr3_2:89680680-89680699 Msa0436250:CDS 50.0%
GCCATAGCAAGTACGGTAAC+AGG - chr3_2:89682324-89682343 None:intergenic 50.0%
AGCGCAAGCTGCAGCAGAAA+TGG + chr3_2:89680675-89680694 Msa0436250:CDS 55.0%
GCGCAAGCTGCAGCAGAAAT+GGG + chr3_2:89680676-89680695 Msa0436250:CDS 55.0%
GTTCTTTGCAGCACCTGGTG+TGG + chr3_2:89680828-89680847 Msa0436250:CDS 55.0%
!! TGGTGTGGCTAGTCTGGCTT+GGG + chr3_2:89680843-89680862 Msa0436250:CDS 55.0%
! GTGGGTTTTCACGGTTCCCG+TGG + chr3_2:89680540-89680559 Msa0436250:CDS 60.0%
! AGCACCTGGTGTGGCTAGTC+TGG + chr3_2:89680837-89680856 Msa0436250:CDS 60.0%
! CAAGCCAGACTAGCCACACC+AGG - chr3_2:89680844-89680863 None:intergenic 60.0%
!! CTGGTGTGGCTAGTCTGGCT+TGG + chr3_2:89680842-89680861 Msa0436250:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89680049 89682512 89680049 ID=Msa0436250;Name=Msa0436250
chr3_2 mRNA 89680049 89682512 89680049 ID=Msa0436250-mRNA-1;Parent=Msa0436250;Name=Msa0436250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|383
chr3_2 exon 89680049 89680939 89680049 ID=Msa0436250-mRNA-1:exon:26654;Parent=Msa0436250-mRNA-1
chr3_2 exon 89682252 89682512 89682252 ID=Msa0436250-mRNA-1:exon:26655;Parent=Msa0436250-mRNA-1
chr3_2 CDS 89680049 89680939 89680049 ID=Msa0436250-mRNA-1:cds;Parent=Msa0436250-mRNA-1
chr3_2 CDS 89682252 89682512 89682252 ID=Msa0436250-mRNA-1:cds;Parent=Msa0436250-mRNA-1
Gene Sequence

>Msa0436250

ATGGAATGTGCAACCCAAGAAATTTCCAAATCAAACATTGAGCTTGTCATCATAGAAAAAAACATCACGAACCACAATAACCAAAAATCAACCTCGTTAATGGTCAGAAAACGATCCTTAATAAGATCCTTAACAAGTATACTAAAAAAACTTCATGCAGGTTATTTCAGAATTAGCCTCTCATTTGGTGGCCAAGCATTACTATGGAAAACATTAATTGATCCAACAAACGACACAAGCAAATCAAGACACATGCTTAGCATGCTTCCTTCCTCTGTTTTCATAGTACTATGGTCTATGTCTCTTTTTATACTCGCATTACTCTCTCTTCTTTACCTCTTAAGATGTTTATTTTTCTTTAAGATGGTAAAAGAAGAATTCTTACACCATGTAGGAGTTAACTATCTTTTCGCTCCATGGATTTCATGGTTTCTATTACTTCAATCAGCACCATTCATAGCTCCCAAAACCATTACTTATTTAATTCTATGGTGGGTTTTCACGGTTCCCGTGGTTGTTCTCGACGTTAAAATTTACGGTCAGTGGTTTACTAAAGGGAAGAGGTCATTTTTAACGACGGTAGCGAATCCGACAAGTCATTTATCGGTAATAGGGAATTTGGTTGGAGCGCAAGCTGCAGCAGAAATGGGTTGGAAAGAAAGTGCTGTGTGTTTGTTTTCATTAGGGATGGTGCATTATTTGGTGTTGTTTGTGACACTTTATCAAAGGTTGTCTGGTGGTGATCGTCTTCCTGCGTTGTTAAGGCCAGTTTTCTTCTTGTTCTTTGCAGCACCTGGTGTGGCTAGTCTGGCTTGGGAATCTATTGTTGGAGATTTTGATACTCTTTCCAAGATGCTCTTCTTTTTGTCCCTATTCCTCTTCATGTCACTGGTTTGCAGGCCAGCCCTATTCAAGAGATCTATGAGAAGGTTTAATGTTGCATGGTGGGCTTACTCCTTTCCTGTTACCGTACTTGCTATGGCTTCTACAAATTATGCACAACAAGTCAAAGGAACTGTTTCCCATATTCTAATGCTCATTCTCTTGGCACTTTCTGTTCTTGTCTCTGTTTCTCTCACATTGTTCACTTTGCTCAACTCTAAGATGCTTCTACCAGATAACGATCCCATTGCAAACATCCTCATTGTTTAA

Protein sequence

>Msa0436250

MECATQEISKSNIELVIIEKNITNHNNQKSTSLMVRKRSLIRSLTSILKKLHAGYFRISLSFGGQALLWKTLIDPTNDTSKSRHMLSMLPSSVFIVLWSMSLFILALLSLLYLLRCLFFFKMVKEEFLHHVGVNYLFAPWISWFLLLQSAPFIAPKTITYLILWWVFTVPVVVLDVKIYGQWFTKGKRSFLTTVANPTSHLSVIGNLVGAQAAAEMGWKESAVCLFSLGMVHYLVLFVTLYQRLSGGDRLPALLRPVFFLFFAAPGVASLAWESIVGDFDTLSKMLFFLSLFLFMSLVCRPALFKRSMRRFNVAWWAYSFPVTVLAMASTNYAQQVKGTVSHILMLILLALSVLVSVSLTLFTLLNSKMLLPDNDPIANILIV*