AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1132880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132880 MtrunA17_Chr5g0398981 96.654 269 2 1 2 270 1 262 0.0 526
Msa1132880 MtrunA17_Chr3g0127151 28.571 196 122 4 48 230 49 239 4.22e-12 64.3
Msa1132880 MtrunA17_Chr3g0112251 37.398 123 71 3 114 230 101 223 1.69e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132880 AT1G12250.2 83.010 206 35 0 65 270 1 206 1.78e-126 358
Msa1132880 AT1G12250.1 68.794 282 73 4 2 270 1 280 2.21e-122 350
Msa1132880 AT1G12250.3 85.517 145 21 0 126 270 1 145 1.28e-89 262
Msa1132880 AT2G44920.2 36.364 132 73 4 105 230 97 223 1.51e-11 63.2

Find 84 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATTACAATTGCCTAAA+AGG 0.171877 7_3:+85728034 None:intergenic
TGACTTCACTAAATAGTTTC+TGG 0.211662 7_3:+85728204 None:intergenic
TAGAATCATGCTTCTTGTTT+TGG 0.226864 7_3:-85728140 Msa1132880:three_prime_UTR
CTTGTGCTTACTCCTGTTAC+AGG 0.233017 7_3:+85728540 None:intergenic
CTGCACTTTAATGTTGAAAT+TGG 0.250096 7_3:-85730261 Msa1132880:five_prime_UTR
ATTGGATCAGCTGCTCAATT+TGG 0.252631 7_3:-85729754 Msa1132880:CDS
TAGGCAATTGTAATTCTATA+AGG 0.272604 7_3:-85728029 Msa1132880:three_prime_UTR
CATATCAGCAGATGTGAAAT+TGG 0.284272 7_3:+85729223 None:intergenic
CATATTCTTGTACATATATC+AGG 0.285862 7_3:-85728350 Msa1132880:three_prime_UTR
TGCATGTGAATGAAAATTTC+AGG 0.287923 7_3:-85729623 Msa1132880:intron
GCTGAAGTGAGGGGTGAATT+TGG 0.317964 7_3:-85729778 Msa1132880:CDS
ATACCCAACACAGAACAAAT+AGG 0.326723 7_3:+85728245 None:intergenic
TACCCTATTTGTTCTGTGTT+GGG 0.344695 7_3:-85728248 Msa1132880:three_prime_UTR
ATTAAGTGCCATCATGTATA+AGG 0.345082 7_3:+85730162 None:intergenic
AACTTCTCCTTGCAGCAGTT+TGG 0.360649 7_3:-85730377 Msa1132880:five_prime_UTR
ATGTAGAGTCCAACAAGAAC+TGG 0.378810 7_3:-85729888 Msa1132880:intron
AAGAATGGCATTCGTGAGAT+TGG 0.392860 7_3:+85728862 None:intergenic
AACAAACGACGAAATGCTTA+TGG 0.399210 7_3:-85728498 Msa1132880:CDS
TACTTTCAATGGTGCATACA+TGG 0.411365 7_3:-85729177 Msa1132880:CDS
AAGCGTCGGGAAGATCTATA+TGG 0.420957 7_3:+85727950 None:intergenic
CTGATATATGTACAAGAATA+TGG 0.421229 7_3:+85728351 None:intergenic
AGTGGCACAAATCCTGTAAC+AGG 0.423388 7_3:-85728552 Msa1132880:CDS
GTAAGCACAAGAGTGAGTTT+AGG 0.427943 7_3:-85728528 Msa1132880:CDS
TTAAAATGTGTGAGCTTTCA+CGG 0.428150 7_3:-85730408 Msa1132880:five_prime_UTR
TTTAGCGGTTCTACTTTCAA+TGG 0.429969 7_3:-85729188 Msa1132880:CDS
CTACCCTATTTGTTCTGTGT+TGG 0.433045 7_3:-85728249 Msa1132880:three_prime_UTR
ATGCATTGTGTTTGAAACCT+TGG 0.441509 7_3:+85730084 None:intergenic
TTTGAAACCTTGGAACTTGA+TGG 0.446789 7_3:+85730094 None:intergenic
CTTGGAGGCGCCATCATTGA+AGG 0.448018 7_3:-85728812 Msa1132880:CDS
TACCCAACACAGAACAAATA+GGG 0.452694 7_3:+85728246 None:intergenic
GTGAGGGGTGAATTTGGTAT+TGG 0.473683 7_3:-85729772 Msa1132880:CDS
TGCGACTCGAAATAGTTACT+TGG 0.477895 7_3:-85728393 Msa1132880:exon
ATCCACACACAGATTCAAAC+AGG 0.480012 7_3:+85728060 None:intergenic
GGTTTCTGCGATGAAGCATC+AGG 0.489768 7_3:-85728420 Msa1132880:CDS
AAAATCAGCGCCTTCAATGA+TGG 0.489950 7_3:+85728802 None:intergenic
ATGAGGAAGTAGATCTTACA+TGG 0.501856 7_3:+85728173 None:intergenic
CACTCAACAATGGAGAGGAT+GGG 0.509929 7_3:+85728472 None:intergenic
TGATTTGAGTGATACATTGA+TGG 0.510666 7_3:-85729018 Msa1132880:CDS
GTCCTCACACGGAGTGACCT+TGG 0.512623 7_3:-85728830 Msa1132880:CDS
GCACTCAACAATGGAGAGGA+TGG 0.517401 7_3:+85728471 None:intergenic
TTCTTACCCATCAAGTTCCA+AGG 0.522939 7_3:-85730101 Msa1132880:CDS
CTTCAATGATGGCGCCTCCA+AGG 0.525449 7_3:+85728813 None:intergenic
CAATTTCAACATTAAAGTGC+AGG 0.526052 7_3:+85730262 None:intergenic
TAAAATGTGTGAGCTTTCAC+GGG 0.533256 7_3:-85730407 Msa1132880:five_prime_UTR
GAGGACTGTTCTAGAAAGAA+TGG 0.538116 7_3:+85728847 None:intergenic
CAAGTTTGAAGCTGAAGTGA+GGG 0.545715 7_3:-85729788 Msa1132880:CDS
TGTAGAGTCCAACAAGAACT+GGG 0.551946 7_3:-85729887 Msa1132880:intron
AATATCTTCCTTATACATGA+TGG 0.554896 7_3:-85730170 Msa1132880:exon
CTCCAAGGTCACTCCGTGTG+AGG 0.564434 7_3:+85728828 None:intergenic
TAAAGTGCAGGAAGTGATTG+TGG 0.569334 7_3:+85730274 None:intergenic
TGGTGAGAATTGATTGAAAG+TGG 0.571719 7_3:+85730130 None:intergenic
TTCCTGTTTGAATCTGTGTG+TGG 0.573278 7_3:-85728062 Msa1132880:three_prime_UTR
GATTCTATATGCAGAAAATG+AGG 0.575957 7_3:+85728156 None:intergenic
TGTACAAGAATATGGTCTGA+TGG 0.577578 7_3:+85728359 None:intergenic
TTAAACAATAATCATCCTCA+AGG 0.584852 7_3:-85730022 Msa1132880:intron
TGATATTCTAATGAGCAATG+AGG 0.585986 7_3:+85730210 None:intergenic
TATATCAGGGACAACAATTG+AGG 0.586029 7_3:-85728336 Msa1132880:three_prime_UTR
ACTCAACAATGGAGAGGATG+GGG 0.589268 7_3:+85728473 None:intergenic
ACAAGTTTGAAGCTGAAGTG+AGG 0.602950 7_3:-85729789 Msa1132880:CDS
AAACTTGTTAAGATCAGCAA+GGG 0.603842 7_3:+85729804 None:intergenic
CTCACACGGAGTGACCTTGG+AGG 0.604487 7_3:-85728827 Msa1132880:CDS
GTAACTATTTCGAGTCGCAA+AGG 0.605296 7_3:+85728397 None:intergenic
CTTCATCGCAGAAACCATCT+CGG 0.606756 7_3:+85728427 None:intergenic
TTGAAACCTTGGAACTTGAT+GGG 0.610134 7_3:+85730095 None:intergenic
ACAAGAGTGAGTTTAGGTTG+CGG 0.613646 7_3:-85728522 Msa1132880:CDS
TTTCTAGAACAGTCCTCACA+CGG 0.614987 7_3:-85728841 Msa1132880:CDS
CAAAATTCCAAACTGCTGCA+AGG 0.615780 7_3:+85730370 None:intergenic
ATTCTAATGAGCAATGAGGA+AGG 0.615808 7_3:+85730214 None:intergenic
TGTGGTGGAGCACTCAACAA+TGG 0.624406 7_3:+85728462 None:intergenic
CGGTCTAGTAGTTTCTGTGG+TGG 0.624970 7_3:+85728447 None:intergenic
ATATTCTTGTACATATATCA+GGG 0.625549 7_3:-85728349 Msa1132880:three_prime_UTR
GCTTTATGCAAGTACGCTAG+TGG 0.631872 7_3:-85728570 Msa1132880:CDS
TGATACATTGATGGATCGCA+TGG 0.638959 7_3:-85729009 Msa1132880:intron
TTGATGGGTAAGAAGAAACA+TGG 0.640651 7_3:+85730110 None:intergenic
CAAACTTGTTAAGATCAGCA+AGG 0.646856 7_3:+85729803 None:intergenic
GAAACTTGTTTCAGCCACGT+TGG 0.648131 7_3:-85729863 Msa1132880:CDS
TAGAGTCCAACAAGAACTGG+GGG 0.661646 7_3:-85729885 Msa1132880:CDS
TCTCGGTCTAGTAGTTTCTG+TGG 0.670722 7_3:+85728444 None:intergenic
CAGAAACTACTAGACCGAGA+TGG 0.678877 7_3:-85728441 Msa1132880:CDS
AAGTTTGAAGCTGAAGTGAG+GGG 0.680605 7_3:-85729787 Msa1132880:CDS
GTAGAGTCCAACAAGAACTG+GGG 0.685567 7_3:-85729886 Msa1132880:intron
TGGAGCACTCAACAATGGAG+AGG 0.687911 7_3:+85728467 None:intergenic
TGAGGAAGTAGATCTTACAT+GGG 0.697423 7_3:+85728174 None:intergenic
AATAACAGCAGCTGCCAACG+TGG 0.709124 7_3:+85729849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTTTTTAATTTTGAT+TGG - chr7_3:85728392-85728411 Msa1132880:exon 10.0%
!!! TGTTATTTAAATTCTTTCTT+AGG - chr7_3:85728784-85728803 Msa1132880:CDS 15.0%
!! AGCTTCTTAAAAAAAAAAAA+CGG - chr7_3:85728932-85728951 Msa1132880:intron 15.0%
!! ACATATATTATATATAGAAG+TGG + chr7_3:85729020-85729039 None:intergenic 15.0%
!!! CTGAAATTATAATACTTTTT+AGG + chr7_3:85729271-85729290 None:intergenic 15.0%
!! TATTATTTGACTAATTATGT+AGG - chr7_3:85729771-85729790 Msa1132880:CDS 15.0%
!! ATGATAATTACTAATGCATT+AGG - chr7_3:85728694-85728713 Msa1132880:intron 20.0%
!! TGATAATTACTAATGCATTA+GGG - chr7_3:85728695-85728714 Msa1132880:intron 20.0%
!! GAAAGAATTTAAATAACACA+AGG + chr7_3:85728782-85728801 None:intergenic 20.0%
!! TTAATTAGTATGTGCTTAAT+TGG + chr7_3:85728824-85728843 None:intergenic 20.0%
!! TTATTATGTACAGAAGTTTA+GGG - chr7_3:85729075-85729094 Msa1132880:intron 20.0%
!! TTAGATTATGTCATGAATAT+AGG + chr7_3:85729102-85729121 None:intergenic 20.0%
!!! TCTCTGATTTTATTTATATC+CGG - chr7_3:85729435-85729454 Msa1132880:intron 20.0%
!! ATATTCTTGTACATATATCA+GGG - chr7_3:85730014-85730033 Msa1132880:intron 20.0%
! AAGTACAAAAATTTGACATG+TGG - chr7_3:85728020-85728039 Msa1132880:three_prime_UTR 25.0%
!! TTCTAGTGTTATCCAATTTT+TGG + chr7_3:85728051-85728070 None:intergenic 25.0%
! AATATCTTCCTTATACATGA+TGG - chr7_3:85728193-85728212 Msa1132880:three_prime_UTR 25.0%
! TTAAACAATAATCATCCTCA+AGG - chr7_3:85728341-85728360 Msa1132880:three_prime_UTR 25.0%
! GTTATTATGTACAGAAGTTT+AGG - chr7_3:85729074-85729093 Msa1132880:intron 25.0%
! TTACAGGTATAAGTTAATAG+TGG - chr7_3:85729236-85729255 Msa1132880:intron 25.0%
! AAAGCTCGAACAATAAAATT+TGG + chr7_3:85729649-85729668 None:intergenic 25.0%
! CTGATATATGTACAAGAATA+TGG + chr7_3:85730015-85730034 None:intergenic 25.0%
! CATATTCTTGTACATATATC+AGG - chr7_3:85730013-85730032 Msa1132880:intron 25.0%
! TAGAATTACAATTGCCTAAA+AGG + chr7_3:85730332-85730351 None:intergenic 25.0%
! TAGGCAATTGTAATTCTATA+AGG - chr7_3:85730334-85730353 Msa1132880:five_prime_UTR 25.0%
TTAAAATGTGTGAGCTTTCA+CGG - chr7_3:85727955-85727974 Msa1132880:three_prime_UTR 30.0%
CAATTTCAACATTAAAGTGC+AGG + chr7_3:85728104-85728123 None:intergenic 30.0%
CTGCACTTTAATGTTGAAAT+TGG - chr7_3:85728102-85728121 Msa1132880:three_prime_UTR 30.0%
TGATATTCTAATGAGCAATG+AGG + chr7_3:85728156-85728175 None:intergenic 30.0%
ATTAAGTGCCATCATGTATA+AGG + chr7_3:85728204-85728223 None:intergenic 30.0%
TTGTAATGCAATGATGACTT+AGG - chr7_3:85728434-85728453 Msa1132880:CDS 30.0%
!! AAACTTGTTAAGATCAGCAA+GGG + chr7_3:85728562-85728581 None:intergenic 30.0%
AAATGAAAGAAACCAACTTG+AGG + chr7_3:85728644-85728663 None:intergenic 30.0%
TGCATGTGAATGAAAATTTC+AGG - chr7_3:85728740-85728759 Msa1132880:intron 30.0%
! TTTCAGGTAATCTTTCAATC+AGG - chr7_3:85728756-85728775 Msa1132880:intron 30.0%
! ATGAGAGAATCAGATTTTAG+CGG - chr7_3:85729160-85729179 Msa1132880:CDS 30.0%
! GCATTCAAAGCAAATTTTAC+AGG - chr7_3:85729220-85729239 Msa1132880:CDS 30.0%
TGATTTGAGTGATACATTGA+TGG - chr7_3:85729345-85729364 Msa1132880:intron 30.0%
TTTATATCCGGTTTCATGTT+TGG - chr7_3:85729447-85729466 Msa1132880:intron 30.0%
TTATATCCGGTTTCATGTTT+GGG - chr7_3:85729448-85729467 Msa1132880:intron 30.0%
GCATATAATGTATGTCAATG+TGG - chr7_3:85729694-85729713 Msa1132880:intron 30.0%
TGACTTCACTAAATAGTTTC+TGG + chr7_3:85730162-85730181 None:intergenic 30.0%
GATTCTATATGCAGAAAATG+AGG + chr7_3:85730210-85730229 None:intergenic 30.0%
!! TAGAATCATGCTTCTTGTTT+TGG - chr7_3:85730223-85730242 Msa1132880:five_prime_UTR 30.0%
TAAAATGTGTGAGCTTTCAC+GGG - chr7_3:85727956-85727975 Msa1132880:three_prime_UTR 35.0%
ATTCTAATGAGCAATGAGGA+AGG + chr7_3:85728152-85728171 None:intergenic 35.0%
TGGTGAGAATTGATTGAAAG+TGG + chr7_3:85728236-85728255 None:intergenic 35.0%
! TTGATGGGTAAGAAGAAACA+TGG + chr7_3:85728256-85728275 None:intergenic 35.0%
TTGAAACCTTGGAACTTGAT+GGG + chr7_3:85728271-85728290 None:intergenic 35.0%
! TTTGAAACCTTGGAACTTGA+TGG + chr7_3:85728272-85728291 None:intergenic 35.0%
! ATGCATTGTGTTTGAAACCT+TGG + chr7_3:85728282-85728301 None:intergenic 35.0%
GTATAGTACTACTAACCTTG+AGG + chr7_3:85728359-85728378 None:intergenic 35.0%
!! CAAACTTGTTAAGATCAGCA+AGG + chr7_3:85728563-85728582 None:intergenic 35.0%
CATTAGGGTTACTATAATGC+AGG - chr7_3:85728710-85728729 Msa1132880:intron 35.0%
! GAAATTGGCTCTTCTGTATA+AGG + chr7_3:85729128-85729147 None:intergenic 35.0%
CATATCAGCAGATGTGAAAT+TGG + chr7_3:85729143-85729162 None:intergenic 35.0%
TTTAGCGGTTCTACTTTCAA+TGG - chr7_3:85729175-85729194 Msa1132880:CDS 35.0%
TACTTTCAATGGTGCATACA+TGG - chr7_3:85729186-85729205 Msa1132880:CDS 35.0%
!!! TTTTTTGCGCGACATGTTTT+AGG - chr7_3:85729319-85729338 Msa1132880:intron 35.0%
TTGGGATGTACTATGTATAC+AGG - chr7_3:85729466-85729485 Msa1132880:intron 35.0%
!! TGATTTTAGTGATGCTGTGT+TGG - chr7_3:85729577-85729596 Msa1132880:intron 35.0%
TGTTCGAGCTTTCACATTAT+AGG - chr7_3:85729657-85729676 Msa1132880:intron 35.0%
GTTCGAGCTTTCACATTATA+GGG - chr7_3:85729658-85729677 Msa1132880:intron 35.0%
AACAAACGACGAAATGCTTA+TGG - chr7_3:85729865-85729884 Msa1132880:CDS 35.0%
TGTACAAGAATATGGTCTGA+TGG + chr7_3:85730007-85730026 None:intergenic 35.0%
TATATCAGGGACAACAATTG+AGG - chr7_3:85730027-85730046 Msa1132880:CDS 35.0%
! TTGAGGCTATGTGTGATTTT+TGG - chr7_3:85730044-85730063 Msa1132880:CDS 35.0%
TACCCTATTTGTTCTGTGTT+GGG - chr7_3:85730115-85730134 Msa1132880:CDS 35.0%
TACCCAACACAGAACAAATA+GGG + chr7_3:85730120-85730139 None:intergenic 35.0%
ATACCCAACACAGAACAAAT+AGG + chr7_3:85730121-85730140 None:intergenic 35.0%
TGAGGAAGTAGATCTTACAT+GGG + chr7_3:85730192-85730211 None:intergenic 35.0%
ATGAGGAAGTAGATCTTACA+TGG + chr7_3:85730193-85730212 None:intergenic 35.0%
CAAAATTCCAAACTGCTGCA+AGG + chr7_3:85727996-85728015 None:intergenic 40.0%
CATGTGGCGTTACCAAAAAT+TGG - chr7_3:85728036-85728055 Msa1132880:three_prime_UTR 40.0%
TAAAGTGCAGGAAGTGATTG+TGG + chr7_3:85728092-85728111 None:intergenic 40.0%
TTCTTACCCATCAAGTTCCA+AGG - chr7_3:85728262-85728281 Msa1132880:three_prime_UTR 40.0%
TTGGACTCTACATTAGCACA+TGG + chr7_3:85728468-85728487 None:intergenic 40.0%
ATGTAGAGTCCAACAAGAAC+TGG - chr7_3:85728475-85728494 Msa1132880:CDS 40.0%
TGTAGAGTCCAACAAGAACT+GGG - chr7_3:85728476-85728495 Msa1132880:CDS 40.0%
! ACAAGTTTGAAGCTGAAGTG+AGG - chr7_3:85728574-85728593 Msa1132880:intron 40.0%
! CAAGTTTGAAGCTGAAGTGA+GGG - chr7_3:85728575-85728594 Msa1132880:intron 40.0%
! AAGTTTGAAGCTGAAGTGAG+GGG - chr7_3:85728576-85728595 Msa1132880:intron 40.0%
ATTGGATCAGCTGCTCAATT+TGG - chr7_3:85728609-85728628 Msa1132880:intron 40.0%
AGTCGCTAATTTAACCCACT+TGG - chr7_3:85728844-85728863 Msa1132880:CDS 40.0%
GTCGCTAATTTAACCCACTT+GGG - chr7_3:85728845-85728864 Msa1132880:CDS 40.0%
CTAATTTAACCCACTTGGGT+TGG - chr7_3:85728849-85728868 Msa1132880:CDS 40.0%
! TGATACATTGATGGATCGCA+TGG - chr7_3:85729354-85729373 Msa1132880:intron 40.0%
GTACATCCCAAACATGAAAC+CGG + chr7_3:85729457-85729476 None:intergenic 40.0%
AAGAATGGCATTCGTGAGAT+TGG + chr7_3:85729504-85729523 None:intergenic 40.0%
!! GAGGACTGTTCTAGAAAGAA+TGG + chr7_3:85729519-85729538 None:intergenic 40.0%
!! TTTCTAGAACAGTCCTCACA+CGG - chr7_3:85729522-85729541 Msa1132880:intron 40.0%
AAAATCAGCGCCTTCAATGA+TGG + chr7_3:85729564-85729583 None:intergenic 40.0%
GCTTTCACATTATAGGGTCA+TGG - chr7_3:85729664-85729683 Msa1132880:intron 40.0%
!! ATGTGGTCAAAGCGTTTTCT+TGG - chr7_3:85729711-85729730 Msa1132880:intron 40.0%
ACTTATCGAGCTTATGACTG+AGG - chr7_3:85729740-85729759 Msa1132880:CDS 40.0%
GTAAGCACAAGAGTGAGTTT+AGG - chr7_3:85729835-85729854 Msa1132880:CDS 40.0%
!! ACAAGAGTGAGTTTAGGTTG+CGG - chr7_3:85729841-85729860 Msa1132880:CDS 40.0%
! GTAACTATTTCGAGTCGCAA+AGG + chr7_3:85729969-85729988 None:intergenic 40.0%
TGCGACTCGAAATAGTTACT+TGG - chr7_3:85729970-85729989 Msa1132880:intron 40.0%
CTACCCTATTTGTTCTGTGT+TGG - chr7_3:85730114-85730133 Msa1132880:CDS 40.0%
TTCCTGTTTGAATCTGTGTG+TGG - chr7_3:85730301-85730320 Msa1132880:five_prime_UTR 40.0%
ATCCACACACAGATTCAAAC+AGG + chr7_3:85730306-85730325 None:intergenic 40.0%
! TGTGTGTGGATCTTCCTTTT+AGG - chr7_3:85730315-85730334 Msa1132880:five_prime_UTR 40.0%
AACTTCTCCTTGCAGCAGTT+TGG - chr7_3:85727986-85728005 Msa1132880:three_prime_UTR 45.0%
GTAGAGTCCAACAAGAACTG+GGG - chr7_3:85728477-85728496 Msa1132880:CDS 45.0%
TAGAGTCCAACAAGAACTGG+GGG - chr7_3:85728478-85728497 Msa1132880:CDS 45.0%
AAGTTTCCCCCAGTTCTTGT+TGG + chr7_3:85728487-85728506 None:intergenic 45.0%
! GAAACTTGTTTCAGCCACGT+TGG - chr7_3:85728500-85728519 Msa1132880:CDS 45.0%
GTGAGGGGTGAATTTGGTAT+TGG - chr7_3:85728591-85728610 Msa1132880:intron 45.0%
! AGTGGTCGTACCAGTTTTTG+GGG + chr7_3:85729608-85729627 None:intergenic 45.0%
! CAGTGGTCGTACCAGTTTTT+GGG + chr7_3:85729609-85729628 None:intergenic 45.0%
! TCAGTGGTCGTACCAGTTTT+TGG + chr7_3:85729610-85729629 None:intergenic 45.0%
TTAGCGATCGATGCAATCAG+TGG + chr7_3:85729626-85729645 None:intergenic 45.0%
GCTTTATGCAAGTACGCTAG+TGG - chr7_3:85729793-85729812 Msa1132880:CDS 45.0%
AGTGGCACAAATCCTGTAAC+AGG - chr7_3:85729811-85729830 Msa1132880:CDS 45.0%
CTTGTGCTTACTCCTGTTAC+AGG + chr7_3:85729826-85729845 None:intergenic 45.0%
ACTCAACAATGGAGAGGATG+GGG + chr7_3:85729893-85729912 None:intergenic 45.0%
CACTCAACAATGGAGAGGAT+GGG + chr7_3:85729894-85729913 None:intergenic 45.0%
TCTCGGTCTAGTAGTTTCTG+TGG + chr7_3:85729922-85729941 None:intergenic 45.0%
CAGAAACTACTAGACCGAGA+TGG - chr7_3:85729922-85729941 Msa1132880:intron 45.0%
CTTCATCGCAGAAACCATCT+CGG + chr7_3:85729939-85729958 None:intergenic 45.0%
!! ATATTAATAGTTAATATATT+TGG - chr7_3:85728667-85728686 Msa1132880:intron 5.0%
!! TATTAATAGTTAATATATTT+GGG - chr7_3:85728668-85728687 Msa1132880:intron 5.0%
AATAACAGCAGCTGCCAACG+TGG + chr7_3:85728517-85728536 None:intergenic 50.0%
GCTGAAGTGAGGGGTGAATT+TGG - chr7_3:85728585-85728604 Msa1132880:intron 50.0%
TGGATCAGCAGACCTCAAGT+TGG - chr7_3:85728629-85728648 Msa1132880:intron 50.0%
!! TTTAACCCACTTGGGTTGGC+TGG - chr7_3:85728853-85728872 Msa1132880:CDS 50.0%
!! TTAACCCACTTGGGTTGGCT+GGG - chr7_3:85728854-85728873 Msa1132880:CDS 50.0%
TGTCTCAGGTTCGATTCTCC+CGG - chr7_3:85728886-85728905 Msa1132880:intron 50.0%
TAGCCCACACAAAGTAGCAC+CGG + chr7_3:85728908-85728927 None:intergenic 50.0%
GTTGGACCTTCCCCAAAAAC+TGG - chr7_3:85729595-85729614 Msa1132880:intron 50.0%
!! GTCGTACCAGTTTTTGGGGA+AGG + chr7_3:85729604-85729623 None:intergenic 50.0%
GCACTCAACAATGGAGAGGA+TGG + chr7_3:85729895-85729914 None:intergenic 50.0%
! TGGAGCACTCAACAATGGAG+AGG + chr7_3:85729899-85729918 None:intergenic 50.0%
! TGTGGTGGAGCACTCAACAA+TGG + chr7_3:85729904-85729923 None:intergenic 50.0%
CGGTCTAGTAGTTTCTGTGG+TGG + chr7_3:85729919-85729938 None:intergenic 50.0%
! GGTTTCTGCGATGAAGCATC+AGG - chr7_3:85729943-85729962 Msa1132880:intron 50.0%
AAGACCCAGCCAACCCAAGT+GGG + chr7_3:85728861-85728880 None:intergenic 55.0%
CTGGGTCTTGAGTGTGTCTC+AGG - chr7_3:85728872-85728891 Msa1132880:CDS 55.0%
!! TCTCCCGGTGCTACTTTGTG+TGG - chr7_3:85728901-85728920 Msa1132880:intron 55.0%
!! CTCCCGGTGCTACTTTGTGT+GGG - chr7_3:85728902-85728921 Msa1132880:intron 55.0%
AGCCCACACAAAGTAGCACC+GGG + chr7_3:85728907-85728926 None:intergenic 55.0%
! CTTCAATGATGGCGCCTCCA+AGG + chr7_3:85729553-85729572 None:intergenic 55.0%
!! CTTGGAGGCGCCATCATTGA+AGG - chr7_3:85729551-85729570 Msa1132880:intron 55.0%
CAAGACCCAGCCAACCCAAG+TGG + chr7_3:85728862-85728881 None:intergenic 60.0%
GTCCTCACACGGAGTGACCT+TGG - chr7_3:85729533-85729552 Msa1132880:intron 60.0%
CTCCAAGGTCACTCCGTGTG+AGG + chr7_3:85729538-85729557 None:intergenic 60.0%
CTCACACGGAGTGACCTTGG+AGG - chr7_3:85729536-85729555 Msa1132880:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 85727955 85730430 85727955 ID=Msa1132880;Name=Msa1132880
chr7_3 mRNA 85727955 85730430 85727955 ID=Msa1132880-mRNA-1;Parent=Msa1132880;Name=Msa1132880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=254|1|1|1|1|1|7|446|270
chr7_3 exon 85727955 85728592 85727955 ID=Msa1132880-mRNA-1:exon:25771;Parent=Msa1132880-mRNA-1
chr7_3 exon 85728769 85728897 85728769 ID=Msa1132880-mRNA-1:exon:25770;Parent=Msa1132880-mRNA-1
chr7_3 exon 85729010 85729044 85729010 ID=Msa1132880-mRNA-1:exon:25769;Parent=Msa1132880-mRNA-1
chr7_3 exon 85729144 85729250 85729144 ID=Msa1132880-mRNA-1:exon:25768;Parent=Msa1132880-mRNA-1
chr7_3 exon 85729624 85729653 85729624 ID=Msa1132880-mRNA-1:exon:25767;Parent=Msa1132880-mRNA-1
chr7_3 exon 85729739 85729904 85729739 ID=Msa1132880-mRNA-1:exon:25766;Parent=Msa1132880-mRNA-1
chr7_3 exon 85730023 85730430 85730023 ID=Msa1132880-mRNA-1:exon:25765;Parent=Msa1132880-mRNA-1
chr7_3 five_prime_UTR 85730177 85730430 85730177 ID=Msa1132880-mRNA-1:five_prime_utr;Parent=Msa1132880-mRNA-1
chr7_3 CDS 85730023 85730176 85730023 ID=Msa1132880-mRNA-1:cds;Parent=Msa1132880-mRNA-1
chr7_3 CDS 85729739 85729904 85729739 ID=Msa1132880-mRNA-1:cds;Parent=Msa1132880-mRNA-1
chr7_3 CDS 85729624 85729653 85729624 ID=Msa1132880-mRNA-1:cds;Parent=Msa1132880-mRNA-1
chr7_3 CDS 85729144 85729250 85729144 ID=Msa1132880-mRNA-1:cds;Parent=Msa1132880-mRNA-1
chr7_3 CDS 85729010 85729044 85729010 ID=Msa1132880-mRNA-1:cds;Parent=Msa1132880-mRNA-1
chr7_3 CDS 85728769 85728897 85728769 ID=Msa1132880-mRNA-1:cds;Parent=Msa1132880-mRNA-1
chr7_3 CDS 85728401 85728592 85728401 ID=Msa1132880-mRNA-1:cds;Parent=Msa1132880-mRNA-1
chr7_3 three_prime_UTR 85727955 85728400 85727955 ID=Msa1132880-mRNA-1:three_prime_utr;Parent=Msa1132880-mRNA-1
Gene Sequence

>Msa1132880

ATGATGGCACTTAATTCATTCACACCACTTTCAATCAATTCTCACCATGTTTCTTCTTACCCATCAAGTTCCAAGGTTTCAAACACAATGCATTTTCATTCAAAGTCATCTCAAGTCATTTGCAAAATGAGCTTAAACAATAATCATCCTCAAGAGTCCAACAAGAACTGGGGGAAACTTGTTTCAGCCACGTTGGCAGCTGCTGTTATTGTTTTCAGCTCTGACATGTCTGCCCTTGCTGATCTTAACAAGTTTGAAGCTGAAGTGAGGGGTGAATTTGGTATTGGATCAGCTGCTCAATTTGGATCAGCAGACCTCAAGAAAACAGTGCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACATCTGCTGATATGAGAGAATCAGATTTTAGCGGTTCTACTTTCAATGGTGCATACATGGAGAAAGCTGTCGCATTCAAAGCAAATTTTACAGGTGCTGATTTGAGTGATACATTGATGGATCGCATGGTTCTTAATGAAGCCAATCTCACGAATGCCATTCTTTCTAGAACAGTCCTCACACGGAGTGACCTTGGAGGCGCCATCATTGAAGGCGCTGATTTTAGTGATGCTGTGTTGGACCTTCCCCAAAAACTGGCTTTATGCAAGTACGCTAGTGGCACAAATCCTGTAACAGGAGTAAGCACAAGAGTGAGTTTAGGTTGCGGAAACAAACGACGAAATGCTTATGGCACCCCATCCTCTCCATTGTTGAGTGCTCCACCACAGAAACTACTAGACCGAGATGGTTTCTGCGATGAAGCATCAGGCCTTTGCGACTCGAAATAG

Protein sequence

>Msa1132880

MMALNSFTPLSINSHHVSSYPSSSKVSNTMHFHSKSSQVICKMSLNNNHPQESNKNWGKLVSATLAAAVIVFSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCGNKRRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK*