AlfalfaGEDB | Msa0795910

M. sativa cultivar zhongmu-4 / Msa0795910

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035
PFAM: PF00805.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795910	XP_003611267.1	96.654	269	2	1	2	270	1	262	0.0	526

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795910	sp\|Q8H1Q1\|TL203_ARATH	68.794	282	73	4	2	270	1	280	2.18e-121	350

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795910	G7KG97	96.654	269	2	1	2	270	1	262	0.0	526

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0795910	0.806198	9.241177e-50	-8.615850e-47
Msa0000610	Msa0795910	0.880720	4.348666e-70	-8.615850e-47
Msa0000800	Msa0795910	-0.864933	8.511809e-65	-8.615850e-47
Msa0001040	Msa0795910	0.837838	4.102932e-57	-8.615850e-47
Msa0001510	Msa0795910	0.906513	1.369593e-80	-8.615850e-47
Msa0001550	Msa0795910	0.839508	1.519140e-57	-8.615850e-47
Msa0002110	Msa0795910	0.933789	1.097438e-95	-8.615850e-47
Msa0002690	Msa0795910	0.941203	6.248558e-101	-8.615850e-47
Msa0002700	Msa0795910	0.936227	2.430537e-97	-8.615850e-47
Msa0003340	Msa0795910	0.904925	7.370764e-80	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795910	MtrunA17_Chr5g0398981	96.654	269	2	1	2	270	1	262	0.0	526
Msa0795910	MtrunA17_Chr3g0127151	28.571	196	122	4	48	230	49	239	4.22e-12	64.3
Msa0795910	MtrunA17_Chr3g0112251	37.398	123	71	3	114	230	101	223	1.69e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0795910	AT1G12250.2	83.010	206	35	0	65	270	1	206	1.78e-126	358
Msa0795910	AT1G12250.1	68.794	282	73	4	2	270	1	280	2.21e-122	350
Msa0795910	AT1G12250.3	85.517	145	21	0	126	270	1	145	1.28e-89	262
Msa0795910	AT2G44920.2	36.364	132	73	4	105	230	97	223	1.51e-11	63.2

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Find 84 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGCGCCTTCAATGA+TGG	0.489950	5_3:+7922043	None:intergenic
AAACTTGTTAAGATCAGCAA+GGG	0.603842	5_3:+7923044	None:intergenic
AACAAACGACGAAATGCTTA+TGG	0.399210	5_3:-7921739	Msa0795910:CDS
AACTTCTCCTTGCAGCAGTT+TGG	0.360649	5_3:-7923617	Msa0795910:five_prime_UTR
AAGAATGGCATTCGTGAGAT+TGG	0.392860	5_3:+7922103	None:intergenic
AAGCGTCGGGAAGATCTATA+TGG	0.420957	5_3:+7921191	None:intergenic
AAGTTTGAAGCTGAAGTGAG+GGG	0.680605	5_3:-7923027	Msa0795910:CDS
AATAACAGCAGCTGCCAACG+TGG	0.709124	5_3:+7923089	None:intergenic
AATATCTTCCTTATACATGA+TGG	0.554896	5_3:-7923410	Msa0795910:exon
ACAAGAGTGAGTTTAGGTTG+CGG	0.613646	5_3:-7921763	Msa0795910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAAATGTGTGAGCTTTCA+CGG	-	chr5_3:7921196-7921215	Msa0795910:three_prime_UTR	30.0%
CAATTTCAACATTAAAGTGC+AGG	+	chr5_3:7921345-7921364	None:intergenic	30.0%
CTGCACTTTAATGTTGAAAT+TGG	-	chr5_3:7921343-7921362	Msa0795910:three_prime_UTR	30.0%
TGATATTCTAATGAGCAATG+AGG	+	chr5_3:7921397-7921416	None:intergenic	30.0%
ATTAAGTGCCATCATGTATA+AGG	+	chr5_3:7921445-7921464	None:intergenic	30.0%
TTGTAATGCAATGATGACTT+AGG	-	chr5_3:7921675-7921694	Msa0795910:CDS	30.0%
AAATGAAAGAAACCAACTTG+AGG	+	chr5_3:7921885-7921904	None:intergenic	30.0%
TGCATGTGAATGAAAATTTC+AGG	-	chr5_3:7921981-7922000	Msa0795910:intron	30.0%
TGATTTGAGTGATACATTGA+TGG	-	chr5_3:7922585-7922604	Msa0795910:intron	30.0%
TTTATATCCGGTTTCATGTT+TGG	-	chr5_3:7922687-7922706	Msa0795910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	7921196	7923670	7921196	ID=Msa0795910;Name=Msa0795910
chr5_3	mRNA	7921196	7923670	7921196	ID=Msa0795910-mRNA-1;Parent=Msa0795910;Name=Msa0795910-mRNA-1;_AED=0.07;_eAED=0.07;_QI=254\|1\|1\|1\|1\|1\|7\|446\|270
chr5_3	exon	7921196	7921833	7921196	ID=Msa0795910-mRNA-1:exon:3309;Parent=Msa0795910-mRNA-1
chr5_3	exon	7922010	7922138	7922010	ID=Msa0795910-mRNA-1:exon:3308;Parent=Msa0795910-mRNA-1
chr5_3	exon	7922251	7922285	7922251	ID=Msa0795910-mRNA-1:exon:3307;Parent=Msa0795910-mRNA-1
chr5_3	exon	7922385	7922491	7922385	ID=Msa0795910-mRNA-1:exon:3306;Parent=Msa0795910-mRNA-1
chr5_3	exon	7922864	7922893	7922864	ID=Msa0795910-mRNA-1:exon:3305;Parent=Msa0795910-mRNA-1
chr5_3	exon	7922979	7923144	7922979	ID=Msa0795910-mRNA-1:exon:3304;Parent=Msa0795910-mRNA-1
chr5_3	exon	7923263	7923670	7923263	ID=Msa0795910-mRNA-1:exon:3303;Parent=Msa0795910-mRNA-1
chr5_3	five_prime_UTR	7923417	7923670	7923417	ID=Msa0795910-mRNA-1:five_prime_utr;Parent=Msa0795910-mRNA-1
chr5_3	CDS	7923263	7923416	7923263	ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3	CDS	7922979	7923144	7922979	ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3	CDS	7922864	7922893	7922864	ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3	CDS	7922385	7922491	7922385	ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3	CDS	7922251	7922285	7922251	ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3	CDS	7922010	7922138	7922010	ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3	CDS	7921642	7921833	7921642	ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3	three_prime_UTR	7921196	7921641	7921196	ID=Msa0795910-mRNA-1:three_prime_utr;Parent=Msa0795910-mRNA-1

Gene Sequence

>Msa0795910

ATGATGGCACTTAATTCATTCACACCACTTTCAATCAATTCTCACCATGTTTCTTCTTACCCATCAAGTTCCAAGGTTTCAAACACAATGCATTTTCATTCAAAGTCATCTCAAGTCATTTGCAAAATGAGCTTAAACAATAATCATCCTCAAGAGTCCAACAAGAACTGGGGGAAACTTGTTTCAGCCACGTTGGCAGCTGCTGTTATTGTTTTCAGCTCTGACATGTCTGCCCTTGCTGATCTTAACAAGTTTGAAGCTGAAGTGAGGGGTGAATTTGGTATTGGATCAGCTGCTCAATTTGGATCAGCAGACCTCAAGAAAACAGTGCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACATCTGCTGATATGAGAGAATCAGATTTTAGCGGTTCTACTTTCAATGGTGCATACATGGAGAAAGCTGTCGCATTCAAAGCAAATTTTACAGGTGCTGATTTGAGTGATACATTGATGGATCGCATGGTTCTTAATGAAGCCAATCTCACGAATGCCATTCTTTCTAGAACAGTCCTCACACGGAGTGACCTTGGAGGCGCCATCATTGAAGGCGCTGATTTTAGTGATGCTGTGTTGGACCTTCCCCAAAAACTGGCTTTATGCAAGTACGCTAGTGGCACAAATCCTGTAACAGGAGTAAGCACAAGAGTGAGTTTAGGTTGCGGAAACAAACGACGAAATGCTTATGGCACCCCATCCTCTCCATTGTTGAGTGCTCCACCACAGAAACTACTAGACCGAGATGGTTTCTGCGATGAAGCATCAGGCCTTTGCGACTCGAAATAG

Protein sequence

>Msa0795910

MMALNSFTPLSINSHHVSSYPSSSKVSNTMHFHSKSSQVICKMSLNNNHPQESNKNWGKLVSATLAAAVIVFSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCGNKRRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK*