AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795910 MtrunA17_Chr5g0398981 96.654 269 2 1 2 270 1 262 0.0 526
Msa0795910 MtrunA17_Chr3g0127151 28.571 196 122 4 48 230 49 239 4.22e-12 64.3
Msa0795910 MtrunA17_Chr3g0112251 37.398 123 71 3 114 230 101 223 1.69e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795910 AT1G12250.2 83.010 206 35 0 65 270 1 206 1.78e-126 358
Msa0795910 AT1G12250.1 68.794 282 73 4 2 270 1 280 2.21e-122 350
Msa0795910 AT1G12250.3 85.517 145 21 0 126 270 1 145 1.28e-89 262
Msa0795910 AT2G44920.2 36.364 132 73 4 105 230 97 223 1.51e-11 63.2

Find 84 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATTACAATTGCCTAAA+AGG 0.171877 5_3:+7921275 None:intergenic
TGACTTCACTAAATAGTTTC+TGG 0.211662 5_3:+7921445 None:intergenic
TAGAATCATGCTTCTTGTTT+TGG 0.226864 5_3:-7921381 Msa0795910:three_prime_UTR
CTTGTGCTTACTCCTGTTAC+AGG 0.233017 5_3:+7921781 None:intergenic
CTGCACTTTAATGTTGAAAT+TGG 0.250096 5_3:-7923501 Msa0795910:five_prime_UTR
ATTGGATCAGCTGCTCAATT+TGG 0.252631 5_3:-7922994 Msa0795910:CDS
TAGGCAATTGTAATTCTATA+AGG 0.272604 5_3:-7921270 Msa0795910:three_prime_UTR
CATATCAGCAGATGTGAAAT+TGG 0.284272 5_3:+7922464 None:intergenic
CATATTCTTGTACATATATC+AGG 0.285862 5_3:-7921591 Msa0795910:three_prime_UTR
TGCATGTGAATGAAAATTTC+AGG 0.287923 5_3:-7922863 Msa0795910:intron
GCTGAAGTGAGGGGTGAATT+TGG 0.317964 5_3:-7923018 Msa0795910:CDS
ATACCCAACACAGAACAAAT+AGG 0.326723 5_3:+7921486 None:intergenic
TACCCTATTTGTTCTGTGTT+GGG 0.344695 5_3:-7921489 Msa0795910:three_prime_UTR
ATTAAGTGCCATCATGTATA+AGG 0.345082 5_3:+7923402 None:intergenic
AACTTCTCCTTGCAGCAGTT+TGG 0.360649 5_3:-7923617 Msa0795910:five_prime_UTR
ATGTAGAGTCCAACAAGAAC+TGG 0.378810 5_3:-7923128 Msa0795910:intron
AAGAATGGCATTCGTGAGAT+TGG 0.392860 5_3:+7922103 None:intergenic
AACAAACGACGAAATGCTTA+TGG 0.399210 5_3:-7921739 Msa0795910:CDS
TACTTTCAATGGTGCATACA+TGG 0.411365 5_3:-7922418 Msa0795910:CDS
AAGCGTCGGGAAGATCTATA+TGG 0.420957 5_3:+7921191 None:intergenic
CTGATATATGTACAAGAATA+TGG 0.421229 5_3:+7921592 None:intergenic
AGTGGCACAAATCCTGTAAC+AGG 0.423388 5_3:-7921793 Msa0795910:CDS
GTAAGCACAAGAGTGAGTTT+AGG 0.427943 5_3:-7921769 Msa0795910:CDS
TTAAAATGTGTGAGCTTTCA+CGG 0.428150 5_3:-7923648 Msa0795910:five_prime_UTR
TTTAGCGGTTCTACTTTCAA+TGG 0.429969 5_3:-7922429 Msa0795910:CDS
CTACCCTATTTGTTCTGTGT+TGG 0.433045 5_3:-7921490 Msa0795910:three_prime_UTR
ATGCATTGTGTTTGAAACCT+TGG 0.441509 5_3:+7923324 None:intergenic
TTTGAAACCTTGGAACTTGA+TGG 0.446789 5_3:+7923334 None:intergenic
CTTGGAGGCGCCATCATTGA+AGG 0.448018 5_3:-7922053 Msa0795910:CDS
TACCCAACACAGAACAAATA+GGG 0.452694 5_3:+7921487 None:intergenic
GTGAGGGGTGAATTTGGTAT+TGG 0.473683 5_3:-7923012 Msa0795910:CDS
TGCGACTCGAAATAGTTACT+TGG 0.477895 5_3:-7921634 Msa0795910:exon
ATCCACACACAGATTCAAAC+AGG 0.480012 5_3:+7921301 None:intergenic
GGTTTCTGCGATGAAGCATC+AGG 0.489768 5_3:-7921661 Msa0795910:CDS
AAAATCAGCGCCTTCAATGA+TGG 0.489950 5_3:+7922043 None:intergenic
ATGAGGAAGTAGATCTTACA+TGG 0.501856 5_3:+7921414 None:intergenic
CACTCAACAATGGAGAGGAT+GGG 0.509929 5_3:+7921713 None:intergenic
TGATTTGAGTGATACATTGA+TGG 0.510666 5_3:-7922259 Msa0795910:CDS
GTCCTCACACGGAGTGACCT+TGG 0.512623 5_3:-7922071 Msa0795910:CDS
GCACTCAACAATGGAGAGGA+TGG 0.517401 5_3:+7921712 None:intergenic
TTCTTACCCATCAAGTTCCA+AGG 0.522939 5_3:-7923341 Msa0795910:CDS
CTTCAATGATGGCGCCTCCA+AGG 0.525449 5_3:+7922054 None:intergenic
CAATTTCAACATTAAAGTGC+AGG 0.526052 5_3:+7923502 None:intergenic
TAAAATGTGTGAGCTTTCAC+GGG 0.533256 5_3:-7923647 Msa0795910:five_prime_UTR
GAGGACTGTTCTAGAAAGAA+TGG 0.538116 5_3:+7922088 None:intergenic
CAAGTTTGAAGCTGAAGTGA+GGG 0.545715 5_3:-7923028 Msa0795910:CDS
TGTAGAGTCCAACAAGAACT+GGG 0.551946 5_3:-7923127 Msa0795910:intron
AATATCTTCCTTATACATGA+TGG 0.554896 5_3:-7923410 Msa0795910:exon
CTCCAAGGTCACTCCGTGTG+AGG 0.564434 5_3:+7922069 None:intergenic
TAAAGTGCAGGAAGTGATTG+TGG 0.569334 5_3:+7923514 None:intergenic
TGGTGAGAATTGATTGAAAG+TGG 0.571719 5_3:+7923370 None:intergenic
TTCCTGTTTGAATCTGTGTG+TGG 0.573278 5_3:-7921303 Msa0795910:three_prime_UTR
GATTCTATATGCAGAAAATG+AGG 0.575957 5_3:+7921397 None:intergenic
TGTACAAGAATATGGTCTGA+TGG 0.577578 5_3:+7921600 None:intergenic
TTAAACAATAATCATCCTCA+AGG 0.584852 5_3:-7923262 Msa0795910:intron
TGATATTCTAATGAGCAATG+AGG 0.585986 5_3:+7923450 None:intergenic
TATATCAGGGACAACAATTG+AGG 0.586029 5_3:-7921577 Msa0795910:three_prime_UTR
ACTCAACAATGGAGAGGATG+GGG 0.589268 5_3:+7921714 None:intergenic
ACAAGTTTGAAGCTGAAGTG+AGG 0.602950 5_3:-7923029 Msa0795910:CDS
AAACTTGTTAAGATCAGCAA+GGG 0.603842 5_3:+7923044 None:intergenic
CTCACACGGAGTGACCTTGG+AGG 0.604487 5_3:-7922068 Msa0795910:CDS
GTAACTATTTCGAGTCGCAA+AGG 0.605296 5_3:+7921638 None:intergenic
CTTCATCGCAGAAACCATCT+CGG 0.606756 5_3:+7921668 None:intergenic
TTGAAACCTTGGAACTTGAT+GGG 0.610134 5_3:+7923335 None:intergenic
ACAAGAGTGAGTTTAGGTTG+CGG 0.613646 5_3:-7921763 Msa0795910:CDS
TTTCTAGAACAGTCCTCACA+CGG 0.614987 5_3:-7922082 Msa0795910:CDS
CAAAATTCCAAACTGCTGCA+AGG 0.615780 5_3:+7923610 None:intergenic
ATTCTAATGAGCAATGAGGA+AGG 0.615808 5_3:+7923454 None:intergenic
TGTGGTGGAGCACTCAACAA+TGG 0.624406 5_3:+7921703 None:intergenic
CGGTCTAGTAGTTTCTGTGG+TGG 0.624970 5_3:+7921688 None:intergenic
ATATTCTTGTACATATATCA+GGG 0.625549 5_3:-7921590 Msa0795910:three_prime_UTR
GCTTTATGCAAGTACGCTAG+TGG 0.631872 5_3:-7921811 Msa0795910:CDS
TGATACATTGATGGATCGCA+TGG 0.638959 5_3:-7922250 Msa0795910:intron
TTGATGGGTAAGAAGAAACA+TGG 0.640651 5_3:+7923350 None:intergenic
CAAACTTGTTAAGATCAGCA+AGG 0.646856 5_3:+7923043 None:intergenic
GAAACTTGTTTCAGCCACGT+TGG 0.648131 5_3:-7923103 Msa0795910:CDS
TAGAGTCCAACAAGAACTGG+GGG 0.661646 5_3:-7923125 Msa0795910:CDS
TCTCGGTCTAGTAGTTTCTG+TGG 0.670722 5_3:+7921685 None:intergenic
CAGAAACTACTAGACCGAGA+TGG 0.678877 5_3:-7921682 Msa0795910:CDS
AAGTTTGAAGCTGAAGTGAG+GGG 0.680605 5_3:-7923027 Msa0795910:CDS
GTAGAGTCCAACAAGAACTG+GGG 0.685567 5_3:-7923126 Msa0795910:intron
TGGAGCACTCAACAATGGAG+AGG 0.687911 5_3:+7921708 None:intergenic
TGAGGAAGTAGATCTTACAT+GGG 0.697423 5_3:+7921415 None:intergenic
AATAACAGCAGCTGCCAACG+TGG 0.709124 5_3:+7923089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTTTTTAATTTTGAT+TGG - chr5_3:7921633-7921652 Msa0795910:exon 10.0%
!!! TGTTATTTAAATTCTTTCTT+AGG - chr5_3:7922025-7922044 Msa0795910:CDS 15.0%
!! TAGCTTCTTAAAAAAAAAAA+CGG - chr5_3:7922172-7922191 Msa0795910:intron 15.0%
!! ACATATATTATATATAGAAG+TGG + chr5_3:7922260-7922279 None:intergenic 15.0%
!!! CTGAAATTATAATACTTTTT+AGG + chr5_3:7922511-7922530 None:intergenic 15.0%
!! TATTATTTGACTAATTATGT+AGG - chr5_3:7923011-7923030 Msa0795910:CDS 15.0%
!! ATGATAATTACTAATGCATT+AGG - chr5_3:7921935-7921954 Msa0795910:intron 20.0%
!! TGATAATTACTAATGCATTA+GGG - chr5_3:7921936-7921955 Msa0795910:intron 20.0%
!! GAAAGAATTTAAATAACACA+AGG + chr5_3:7922023-7922042 None:intergenic 20.0%
!! TTAATTAGTATGTGCTTAAT+TGG + chr5_3:7922065-7922084 None:intergenic 20.0%
!! TTATTATGTACAGAAGTTTA+GGG - chr5_3:7922315-7922334 Msa0795910:intron 20.0%
!! TTAGATTATGTCATGAATAT+AGG + chr5_3:7922342-7922361 None:intergenic 20.0%
!!! TCTCTGATTTTATTTATATC+CGG - chr5_3:7922675-7922694 Msa0795910:intron 20.0%
!! ATATTCTTGTACATATATCA+GGG - chr5_3:7923254-7923273 Msa0795910:intron 20.0%
! AAGTACAAAAATTTGACATG+TGG - chr5_3:7921261-7921280 Msa0795910:three_prime_UTR 25.0%
!! TTCTAGTGTTATCCAATTTT+TGG + chr5_3:7921292-7921311 None:intergenic 25.0%
! AATATCTTCCTTATACATGA+TGG - chr5_3:7921434-7921453 Msa0795910:three_prime_UTR 25.0%
! TTAAACAATAATCATCCTCA+AGG - chr5_3:7921582-7921601 Msa0795910:three_prime_UTR 25.0%
! GTTATTATGTACAGAAGTTT+AGG - chr5_3:7922314-7922333 Msa0795910:intron 25.0%
! TTACAGGTATAAGTTAATAG+TGG - chr5_3:7922476-7922495 Msa0795910:intron 25.0%
! AAAGCTCGAACAATAAAATT+TGG + chr5_3:7922889-7922908 None:intergenic 25.0%
! CTGATATATGTACAAGAATA+TGG + chr5_3:7923255-7923274 None:intergenic 25.0%
! CATATTCTTGTACATATATC+AGG - chr5_3:7923253-7923272 Msa0795910:intron 25.0%
! TAGAATTACAATTGCCTAAA+AGG + chr5_3:7923572-7923591 None:intergenic 25.0%
! TAGGCAATTGTAATTCTATA+AGG - chr5_3:7923574-7923593 Msa0795910:five_prime_UTR 25.0%
TTAAAATGTGTGAGCTTTCA+CGG - chr5_3:7921196-7921215 Msa0795910:three_prime_UTR 30.0%
CAATTTCAACATTAAAGTGC+AGG + chr5_3:7921345-7921364 None:intergenic 30.0%
CTGCACTTTAATGTTGAAAT+TGG - chr5_3:7921343-7921362 Msa0795910:three_prime_UTR 30.0%
TGATATTCTAATGAGCAATG+AGG + chr5_3:7921397-7921416 None:intergenic 30.0%
ATTAAGTGCCATCATGTATA+AGG + chr5_3:7921445-7921464 None:intergenic 30.0%
TTGTAATGCAATGATGACTT+AGG - chr5_3:7921675-7921694 Msa0795910:CDS 30.0%
!! AAACTTGTTAAGATCAGCAA+GGG + chr5_3:7921803-7921822 None:intergenic 30.0%
AAATGAAAGAAACCAACTTG+AGG + chr5_3:7921885-7921904 None:intergenic 30.0%
TGCATGTGAATGAAAATTTC+AGG - chr5_3:7921981-7922000 Msa0795910:intron 30.0%
! TTTCAGGTAATCTTTCAATC+AGG - chr5_3:7921997-7922016 Msa0795910:intron 30.0%
! ATGAGAGAATCAGATTTTAG+CGG - chr5_3:7922400-7922419 Msa0795910:CDS 30.0%
! GCATTCAAAGCAAATTTTAC+AGG - chr5_3:7922460-7922479 Msa0795910:CDS 30.0%
TGATTTGAGTGATACATTGA+TGG - chr5_3:7922585-7922604 Msa0795910:intron 30.0%
TTTATATCCGGTTTCATGTT+TGG - chr5_3:7922687-7922706 Msa0795910:intron 30.0%
TTATATCCGGTTTCATGTTT+GGG - chr5_3:7922688-7922707 Msa0795910:intron 30.0%
GCATATAATGTATGTCAATG+TGG - chr5_3:7922934-7922953 Msa0795910:intron 30.0%
TGACTTCACTAAATAGTTTC+TGG + chr5_3:7923402-7923421 None:intergenic 30.0%
GATTCTATATGCAGAAAATG+AGG + chr5_3:7923450-7923469 None:intergenic 30.0%
!! TAGAATCATGCTTCTTGTTT+TGG - chr5_3:7923463-7923482 Msa0795910:five_prime_UTR 30.0%
TAAAATGTGTGAGCTTTCAC+GGG - chr5_3:7921197-7921216 Msa0795910:three_prime_UTR 35.0%
ATTCTAATGAGCAATGAGGA+AGG + chr5_3:7921393-7921412 None:intergenic 35.0%
TGGTGAGAATTGATTGAAAG+TGG + chr5_3:7921477-7921496 None:intergenic 35.0%
! TTGATGGGTAAGAAGAAACA+TGG + chr5_3:7921497-7921516 None:intergenic 35.0%
TTGAAACCTTGGAACTTGAT+GGG + chr5_3:7921512-7921531 None:intergenic 35.0%
! TTTGAAACCTTGGAACTTGA+TGG + chr5_3:7921513-7921532 None:intergenic 35.0%
! ATGCATTGTGTTTGAAACCT+TGG + chr5_3:7921523-7921542 None:intergenic 35.0%
GTATAGTACTACTAACCTTG+AGG + chr5_3:7921600-7921619 None:intergenic 35.0%
!! CAAACTTGTTAAGATCAGCA+AGG + chr5_3:7921804-7921823 None:intergenic 35.0%
CATTAGGGTTACTATAATGC+AGG - chr5_3:7921951-7921970 Msa0795910:intron 35.0%
! GAAATTGGCTCTTCTGTATA+AGG + chr5_3:7922368-7922387 None:intergenic 35.0%
CATATCAGCAGATGTGAAAT+TGG + chr5_3:7922383-7922402 None:intergenic 35.0%
TTTAGCGGTTCTACTTTCAA+TGG - chr5_3:7922415-7922434 Msa0795910:CDS 35.0%
TACTTTCAATGGTGCATACA+TGG - chr5_3:7922426-7922445 Msa0795910:CDS 35.0%
!!! TTTTTTGCGCGACATGTTTT+AGG - chr5_3:7922559-7922578 Msa0795910:intron 35.0%
TTGGGATGTACTATGTATAC+AGG - chr5_3:7922706-7922725 Msa0795910:intron 35.0%
!! TGATTTTAGTGATGCTGTGT+TGG - chr5_3:7922817-7922836 Msa0795910:intron 35.0%
TGTTCGAGCTTTCACATTAT+AGG - chr5_3:7922897-7922916 Msa0795910:intron 35.0%
GTTCGAGCTTTCACATTATA+GGG - chr5_3:7922898-7922917 Msa0795910:intron 35.0%
AACAAACGACGAAATGCTTA+TGG - chr5_3:7923105-7923124 Msa0795910:CDS 35.0%
TGTACAAGAATATGGTCTGA+TGG + chr5_3:7923247-7923266 None:intergenic 35.0%
TATATCAGGGACAACAATTG+AGG - chr5_3:7923267-7923286 Msa0795910:CDS 35.0%
! TTGAGGCTATGTGTGATTTT+TGG - chr5_3:7923284-7923303 Msa0795910:CDS 35.0%
TACCCTATTTGTTCTGTGTT+GGG - chr5_3:7923355-7923374 Msa0795910:CDS 35.0%
TACCCAACACAGAACAAATA+GGG + chr5_3:7923360-7923379 None:intergenic 35.0%
ATACCCAACACAGAACAAAT+AGG + chr5_3:7923361-7923380 None:intergenic 35.0%
TGAGGAAGTAGATCTTACAT+GGG + chr5_3:7923432-7923451 None:intergenic 35.0%
ATGAGGAAGTAGATCTTACA+TGG + chr5_3:7923433-7923452 None:intergenic 35.0%
CAAAATTCCAAACTGCTGCA+AGG + chr5_3:7921237-7921256 None:intergenic 40.0%
CATGTGGCGTTACCAAAAAT+TGG - chr5_3:7921277-7921296 Msa0795910:three_prime_UTR 40.0%
TAAAGTGCAGGAAGTGATTG+TGG + chr5_3:7921333-7921352 None:intergenic 40.0%
TTCTTACCCATCAAGTTCCA+AGG - chr5_3:7921503-7921522 Msa0795910:three_prime_UTR 40.0%
TTGGACTCTACATTAGCACA+TGG + chr5_3:7921709-7921728 None:intergenic 40.0%
ATGTAGAGTCCAACAAGAAC+TGG - chr5_3:7921716-7921735 Msa0795910:CDS 40.0%
TGTAGAGTCCAACAAGAACT+GGG - chr5_3:7921717-7921736 Msa0795910:CDS 40.0%
! ACAAGTTTGAAGCTGAAGTG+AGG - chr5_3:7921815-7921834 Msa0795910:intron 40.0%
! CAAGTTTGAAGCTGAAGTGA+GGG - chr5_3:7921816-7921835 Msa0795910:intron 40.0%
! AAGTTTGAAGCTGAAGTGAG+GGG - chr5_3:7921817-7921836 Msa0795910:intron 40.0%
ATTGGATCAGCTGCTCAATT+TGG - chr5_3:7921850-7921869 Msa0795910:intron 40.0%
AGTCGCTAATTTAACCCACT+TGG - chr5_3:7922085-7922104 Msa0795910:CDS 40.0%
GTCGCTAATTTAACCCACTT+GGG - chr5_3:7922086-7922105 Msa0795910:CDS 40.0%
CTAATTTAACCCACTTGGGT+TGG - chr5_3:7922090-7922109 Msa0795910:CDS 40.0%
! TGATACATTGATGGATCGCA+TGG - chr5_3:7922594-7922613 Msa0795910:intron 40.0%
GTACATCCCAAACATGAAAC+CGG + chr5_3:7922697-7922716 None:intergenic 40.0%
AAGAATGGCATTCGTGAGAT+TGG + chr5_3:7922744-7922763 None:intergenic 40.0%
!! GAGGACTGTTCTAGAAAGAA+TGG + chr5_3:7922759-7922778 None:intergenic 40.0%
!! TTTCTAGAACAGTCCTCACA+CGG - chr5_3:7922762-7922781 Msa0795910:intron 40.0%
AAAATCAGCGCCTTCAATGA+TGG + chr5_3:7922804-7922823 None:intergenic 40.0%
GCTTTCACATTATAGGGTCA+TGG - chr5_3:7922904-7922923 Msa0795910:intron 40.0%
!! ATGTGGTCAAAGCGTTTTCT+TGG - chr5_3:7922951-7922970 Msa0795910:intron 40.0%
ACTTATCGAGCTTATGACTG+AGG - chr5_3:7922980-7922999 Msa0795910:CDS 40.0%
GTAAGCACAAGAGTGAGTTT+AGG - chr5_3:7923075-7923094 Msa0795910:CDS 40.0%
!! ACAAGAGTGAGTTTAGGTTG+CGG - chr5_3:7923081-7923100 Msa0795910:CDS 40.0%
! GTAACTATTTCGAGTCGCAA+AGG + chr5_3:7923209-7923228 None:intergenic 40.0%
TGCGACTCGAAATAGTTACT+TGG - chr5_3:7923210-7923229 Msa0795910:intron 40.0%
CTACCCTATTTGTTCTGTGT+TGG - chr5_3:7923354-7923373 Msa0795910:CDS 40.0%
TTCCTGTTTGAATCTGTGTG+TGG - chr5_3:7923541-7923560 Msa0795910:five_prime_UTR 40.0%
ATCCACACACAGATTCAAAC+AGG + chr5_3:7923546-7923565 None:intergenic 40.0%
! TGTGTGTGGATCTTCCTTTT+AGG - chr5_3:7923555-7923574 Msa0795910:five_prime_UTR 40.0%
AACTTCTCCTTGCAGCAGTT+TGG - chr5_3:7921227-7921246 Msa0795910:three_prime_UTR 45.0%
GTAGAGTCCAACAAGAACTG+GGG - chr5_3:7921718-7921737 Msa0795910:CDS 45.0%
TAGAGTCCAACAAGAACTGG+GGG - chr5_3:7921719-7921738 Msa0795910:CDS 45.0%
AAGTTTCCCCCAGTTCTTGT+TGG + chr5_3:7921728-7921747 None:intergenic 45.0%
! GAAACTTGTTTCAGCCACGT+TGG - chr5_3:7921741-7921760 Msa0795910:CDS 45.0%
GTGAGGGGTGAATTTGGTAT+TGG - chr5_3:7921832-7921851 Msa0795910:intron 45.0%
! AGTGGTCGTACCAGTTTTTG+GGG + chr5_3:7922848-7922867 None:intergenic 45.0%
! CAGTGGTCGTACCAGTTTTT+GGG + chr5_3:7922849-7922868 None:intergenic 45.0%
! TCAGTGGTCGTACCAGTTTT+TGG + chr5_3:7922850-7922869 None:intergenic 45.0%
TTAGCGATCGATGCAATCAG+TGG + chr5_3:7922866-7922885 None:intergenic 45.0%
GCTTTATGCAAGTACGCTAG+TGG - chr5_3:7923033-7923052 Msa0795910:CDS 45.0%
AGTGGCACAAATCCTGTAAC+AGG - chr5_3:7923051-7923070 Msa0795910:CDS 45.0%
CTTGTGCTTACTCCTGTTAC+AGG + chr5_3:7923066-7923085 None:intergenic 45.0%
ACTCAACAATGGAGAGGATG+GGG + chr5_3:7923133-7923152 None:intergenic 45.0%
CACTCAACAATGGAGAGGAT+GGG + chr5_3:7923134-7923153 None:intergenic 45.0%
TCTCGGTCTAGTAGTTTCTG+TGG + chr5_3:7923162-7923181 None:intergenic 45.0%
CAGAAACTACTAGACCGAGA+TGG - chr5_3:7923162-7923181 Msa0795910:intron 45.0%
CTTCATCGCAGAAACCATCT+CGG + chr5_3:7923179-7923198 None:intergenic 45.0%
!! ATATTAATAGTTAATATATT+TGG - chr5_3:7921908-7921927 Msa0795910:intron 5.0%
!! TATTAATAGTTAATATATTT+GGG - chr5_3:7921909-7921928 Msa0795910:intron 5.0%
AATAACAGCAGCTGCCAACG+TGG + chr5_3:7921758-7921777 None:intergenic 50.0%
GCTGAAGTGAGGGGTGAATT+TGG - chr5_3:7921826-7921845 Msa0795910:intron 50.0%
TGGATCAGCAGACCTCAAGT+TGG - chr5_3:7921870-7921889 Msa0795910:intron 50.0%
!! TTTAACCCACTTGGGTTGGC+TGG - chr5_3:7922094-7922113 Msa0795910:CDS 50.0%
!! TTAACCCACTTGGGTTGGCT+GGG - chr5_3:7922095-7922114 Msa0795910:CDS 50.0%
TGTCTCAGGTTCGATTCTCC+CGG - chr5_3:7922127-7922146 Msa0795910:intron 50.0%
TAGCCCACACAAAGTAGCAC+CGG + chr5_3:7922149-7922168 None:intergenic 50.0%
GTTGGACCTTCCCCAAAAAC+TGG - chr5_3:7922835-7922854 Msa0795910:intron 50.0%
!! GTCGTACCAGTTTTTGGGGA+AGG + chr5_3:7922844-7922863 None:intergenic 50.0%
GCACTCAACAATGGAGAGGA+TGG + chr5_3:7923135-7923154 None:intergenic 50.0%
! TGGAGCACTCAACAATGGAG+AGG + chr5_3:7923139-7923158 None:intergenic 50.0%
! TGTGGTGGAGCACTCAACAA+TGG + chr5_3:7923144-7923163 None:intergenic 50.0%
CGGTCTAGTAGTTTCTGTGG+TGG + chr5_3:7923159-7923178 None:intergenic 50.0%
! GGTTTCTGCGATGAAGCATC+AGG - chr5_3:7923183-7923202 Msa0795910:intron 50.0%
AAGACCCAGCCAACCCAAGT+GGG + chr5_3:7922102-7922121 None:intergenic 55.0%
CTGGGTCTTGAGTGTGTCTC+AGG - chr5_3:7922113-7922132 Msa0795910:CDS 55.0%
!! TCTCCCGGTGCTACTTTGTG+TGG - chr5_3:7922142-7922161 Msa0795910:intron 55.0%
!! CTCCCGGTGCTACTTTGTGT+GGG - chr5_3:7922143-7922162 Msa0795910:intron 55.0%
AGCCCACACAAAGTAGCACC+GGG + chr5_3:7922148-7922167 None:intergenic 55.0%
! CTTCAATGATGGCGCCTCCA+AGG + chr5_3:7922793-7922812 None:intergenic 55.0%
!! CTTGGAGGCGCCATCATTGA+AGG - chr5_3:7922791-7922810 Msa0795910:intron 55.0%
CAAGACCCAGCCAACCCAAG+TGG + chr5_3:7922103-7922122 None:intergenic 60.0%
GTCCTCACACGGAGTGACCT+TGG - chr5_3:7922773-7922792 Msa0795910:intron 60.0%
CTCCAAGGTCACTCCGTGTG+AGG + chr5_3:7922778-7922797 None:intergenic 60.0%
CTCACACGGAGTGACCTTGG+AGG - chr5_3:7922776-7922795 Msa0795910:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7921196 7923670 7921196 ID=Msa0795910;Name=Msa0795910
chr5_3 mRNA 7921196 7923670 7921196 ID=Msa0795910-mRNA-1;Parent=Msa0795910;Name=Msa0795910-mRNA-1;_AED=0.07;_eAED=0.07;_QI=254|1|1|1|1|1|7|446|270
chr5_3 exon 7921196 7921833 7921196 ID=Msa0795910-mRNA-1:exon:3309;Parent=Msa0795910-mRNA-1
chr5_3 exon 7922010 7922138 7922010 ID=Msa0795910-mRNA-1:exon:3308;Parent=Msa0795910-mRNA-1
chr5_3 exon 7922251 7922285 7922251 ID=Msa0795910-mRNA-1:exon:3307;Parent=Msa0795910-mRNA-1
chr5_3 exon 7922385 7922491 7922385 ID=Msa0795910-mRNA-1:exon:3306;Parent=Msa0795910-mRNA-1
chr5_3 exon 7922864 7922893 7922864 ID=Msa0795910-mRNA-1:exon:3305;Parent=Msa0795910-mRNA-1
chr5_3 exon 7922979 7923144 7922979 ID=Msa0795910-mRNA-1:exon:3304;Parent=Msa0795910-mRNA-1
chr5_3 exon 7923263 7923670 7923263 ID=Msa0795910-mRNA-1:exon:3303;Parent=Msa0795910-mRNA-1
chr5_3 five_prime_UTR 7923417 7923670 7923417 ID=Msa0795910-mRNA-1:five_prime_utr;Parent=Msa0795910-mRNA-1
chr5_3 CDS 7923263 7923416 7923263 ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3 CDS 7922979 7923144 7922979 ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3 CDS 7922864 7922893 7922864 ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3 CDS 7922385 7922491 7922385 ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3 CDS 7922251 7922285 7922251 ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3 CDS 7922010 7922138 7922010 ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3 CDS 7921642 7921833 7921642 ID=Msa0795910-mRNA-1:cds;Parent=Msa0795910-mRNA-1
chr5_3 three_prime_UTR 7921196 7921641 7921196 ID=Msa0795910-mRNA-1:three_prime_utr;Parent=Msa0795910-mRNA-1
Gene Sequence

>Msa0795910

ATGATGGCACTTAATTCATTCACACCACTTTCAATCAATTCTCACCATGTTTCTTCTTACCCATCAAGTTCCAAGGTTTCAAACACAATGCATTTTCATTCAAAGTCATCTCAAGTCATTTGCAAAATGAGCTTAAACAATAATCATCCTCAAGAGTCCAACAAGAACTGGGGGAAACTTGTTTCAGCCACGTTGGCAGCTGCTGTTATTGTTTTCAGCTCTGACATGTCTGCCCTTGCTGATCTTAACAAGTTTGAAGCTGAAGTGAGGGGTGAATTTGGTATTGGATCAGCTGCTCAATTTGGATCAGCAGACCTCAAGAAAACAGTGCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACATCTGCTGATATGAGAGAATCAGATTTTAGCGGTTCTACTTTCAATGGTGCATACATGGAGAAAGCTGTCGCATTCAAAGCAAATTTTACAGGTGCTGATTTGAGTGATACATTGATGGATCGCATGGTTCTTAATGAAGCCAATCTCACGAATGCCATTCTTTCTAGAACAGTCCTCACACGGAGTGACCTTGGAGGCGCCATCATTGAAGGCGCTGATTTTAGTGATGCTGTGTTGGACCTTCCCCAAAAACTGGCTTTATGCAAGTACGCTAGTGGCACAAATCCTGTAACAGGAGTAAGCACAAGAGTGAGTTTAGGTTGCGGAAACAAACGACGAAATGCTTATGGCACCCCATCCTCTCCATTGTTGAGTGCTCCACCACAGAAACTACTAGACCGAGATGGTTTCTGCGATGAAGCATCAGGCCTTTGCGACTCGAAATAG

Protein sequence

>Msa0795910

MMALNSFTPLSINSHHVSSYPSSSKVSNTMHFHSKSSQVICKMSLNNNHPQESNKNWGKLVSATLAAAVIVFSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCGNKRRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK*