AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833360 MtrunA17_Chr5g0398981 96.654 269 2 1 2 270 1 262 0.0 526
Msa0833360 MtrunA17_Chr3g0127151 28.571 196 122 4 48 230 49 239 4.22e-12 64.3
Msa0833360 MtrunA17_Chr3g0112251 37.398 123 71 3 114 230 101 223 1.69e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833360 AT1G12250.2 83.010 206 35 0 65 270 1 206 1.78e-126 358
Msa0833360 AT1G12250.1 68.794 282 73 4 2 270 1 280 2.21e-122 350
Msa0833360 AT1G12250.3 85.517 145 21 0 126 270 1 145 1.28e-89 262
Msa0833360 AT2G44920.2 36.364 132 73 4 105 230 97 223 1.51e-11 63.2

Find 84 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATTACAATTGCCTAAA+AGG 0.171877 5_4:+6516696 None:intergenic
TGACTTCACTAAATAGTTTC+TGG 0.211662 5_4:+6516866 None:intergenic
TAGAATCATGCTTCTTGTTT+TGG 0.226864 5_4:-6516802 Msa0833360:three_prime_UTR
CTTGTGCTTACTCCTGTTAC+AGG 0.233017 5_4:+6517202 None:intergenic
CTGCACTTTAATGTTGAAAT+TGG 0.250096 5_4:-6518922 Msa0833360:five_prime_UTR
ATTGGATCAGCTGCTCAATT+TGG 0.252631 5_4:-6518415 Msa0833360:CDS
TAGGCAATTGTAATTCTATA+AGG 0.272604 5_4:-6516691 Msa0833360:three_prime_UTR
CATATCAGCAGATGTGAAAT+TGG 0.284272 5_4:+6517885 None:intergenic
CATATTCTTGTACATATATC+AGG 0.285862 5_4:-6517012 Msa0833360:three_prime_UTR
TGCATGTGAATGAAAATTTC+AGG 0.287923 5_4:-6518284 Msa0833360:intron
GCTGAAGTGAGGGGTGAATT+TGG 0.317964 5_4:-6518439 Msa0833360:CDS
ATACCCAACACAGAACAAAT+AGG 0.326723 5_4:+6516907 None:intergenic
TACCCTATTTGTTCTGTGTT+GGG 0.344695 5_4:-6516910 Msa0833360:three_prime_UTR
ATTAAGTGCCATCATGTATA+AGG 0.345082 5_4:+6518823 None:intergenic
AACTTCTCCTTGCAGCAGTT+TGG 0.360649 5_4:-6519038 Msa0833360:five_prime_UTR
ATGTAGAGTCCAACAAGAAC+TGG 0.378810 5_4:-6518549 Msa0833360:intron
AAGAATGGCATTCGTGAGAT+TGG 0.392860 5_4:+6517524 None:intergenic
AACAAACGACGAAATGCTTA+TGG 0.399210 5_4:-6517160 Msa0833360:CDS
TACTTTCAATGGTGCATACA+TGG 0.411365 5_4:-6517839 Msa0833360:CDS
AAGCGTCGGGAAGATCTATA+TGG 0.420957 5_4:+6516612 None:intergenic
CTGATATATGTACAAGAATA+TGG 0.421229 5_4:+6517013 None:intergenic
AGTGGCACAAATCCTGTAAC+AGG 0.423388 5_4:-6517214 Msa0833360:CDS
GTAAGCACAAGAGTGAGTTT+AGG 0.427943 5_4:-6517190 Msa0833360:CDS
TTAAAATGTGTGAGCTTTCA+CGG 0.428150 5_4:-6519069 Msa0833360:five_prime_UTR
TTTAGCGGTTCTACTTTCAA+TGG 0.429969 5_4:-6517850 Msa0833360:CDS
CTACCCTATTTGTTCTGTGT+TGG 0.433045 5_4:-6516911 Msa0833360:three_prime_UTR
ATGCATTGTGTTTGAAACCT+TGG 0.441509 5_4:+6518745 None:intergenic
TTTGAAACCTTGGAACTTGA+TGG 0.446789 5_4:+6518755 None:intergenic
CTTGGAGGCGCCATCATTGA+AGG 0.448018 5_4:-6517474 Msa0833360:CDS
TACCCAACACAGAACAAATA+GGG 0.452694 5_4:+6516908 None:intergenic
GTGAGGGGTGAATTTGGTAT+TGG 0.473683 5_4:-6518433 Msa0833360:CDS
TGCGACTCGAAATAGTTACT+TGG 0.477895 5_4:-6517055 Msa0833360:exon
ATCCACACACAGATTCAAAC+AGG 0.480012 5_4:+6516722 None:intergenic
GGTTTCTGCGATGAAGCATC+AGG 0.489768 5_4:-6517082 Msa0833360:CDS
AAAATCAGCGCCTTCAATGA+TGG 0.489950 5_4:+6517464 None:intergenic
ATGAGGAAGTAGATCTTACA+TGG 0.501856 5_4:+6516835 None:intergenic
CACTCAACAATGGAGAGGAT+GGG 0.509929 5_4:+6517134 None:intergenic
TGATTTGAGTGATACATTGA+TGG 0.510666 5_4:-6517680 Msa0833360:CDS
GTCCTCACACGGAGTGACCT+TGG 0.512623 5_4:-6517492 Msa0833360:CDS
GCACTCAACAATGGAGAGGA+TGG 0.517401 5_4:+6517133 None:intergenic
TTCTTACCCATCAAGTTCCA+AGG 0.522939 5_4:-6518762 Msa0833360:CDS
CTTCAATGATGGCGCCTCCA+AGG 0.525449 5_4:+6517475 None:intergenic
CAATTTCAACATTAAAGTGC+AGG 0.526052 5_4:+6518923 None:intergenic
TAAAATGTGTGAGCTTTCAC+GGG 0.533256 5_4:-6519068 Msa0833360:five_prime_UTR
GAGGACTGTTCTAGAAAGAA+TGG 0.538116 5_4:+6517509 None:intergenic
CAAGTTTGAAGCTGAAGTGA+GGG 0.545715 5_4:-6518449 Msa0833360:CDS
TGTAGAGTCCAACAAGAACT+GGG 0.551946 5_4:-6518548 Msa0833360:intron
AATATCTTCCTTATACATGA+TGG 0.554896 5_4:-6518831 Msa0833360:exon
CTCCAAGGTCACTCCGTGTG+AGG 0.564434 5_4:+6517490 None:intergenic
TAAAGTGCAGGAAGTGATTG+TGG 0.569334 5_4:+6518935 None:intergenic
TGGTGAGAATTGATTGAAAG+TGG 0.571719 5_4:+6518791 None:intergenic
TTCCTGTTTGAATCTGTGTG+TGG 0.573278 5_4:-6516724 Msa0833360:three_prime_UTR
GATTCTATATGCAGAAAATG+AGG 0.575957 5_4:+6516818 None:intergenic
TGTACAAGAATATGGTCTGA+TGG 0.577578 5_4:+6517021 None:intergenic
TTAAACAATAATCATCCTCA+AGG 0.584852 5_4:-6518683 Msa0833360:intron
TGATATTCTAATGAGCAATG+AGG 0.585986 5_4:+6518871 None:intergenic
TATATCAGGGACAACAATTG+AGG 0.586029 5_4:-6516998 Msa0833360:three_prime_UTR
ACTCAACAATGGAGAGGATG+GGG 0.589268 5_4:+6517135 None:intergenic
ACAAGTTTGAAGCTGAAGTG+AGG 0.602950 5_4:-6518450 Msa0833360:CDS
AAACTTGTTAAGATCAGCAA+GGG 0.603842 5_4:+6518465 None:intergenic
CTCACACGGAGTGACCTTGG+AGG 0.604487 5_4:-6517489 Msa0833360:CDS
GTAACTATTTCGAGTCGCAA+AGG 0.605296 5_4:+6517059 None:intergenic
CTTCATCGCAGAAACCATCT+CGG 0.606756 5_4:+6517089 None:intergenic
TTGAAACCTTGGAACTTGAT+GGG 0.610134 5_4:+6518756 None:intergenic
ACAAGAGTGAGTTTAGGTTG+CGG 0.613646 5_4:-6517184 Msa0833360:CDS
TTTCTAGAACAGTCCTCACA+CGG 0.614987 5_4:-6517503 Msa0833360:CDS
CAAAATTCCAAACTGCTGCA+AGG 0.615780 5_4:+6519031 None:intergenic
ATTCTAATGAGCAATGAGGA+AGG 0.615808 5_4:+6518875 None:intergenic
TGTGGTGGAGCACTCAACAA+TGG 0.624406 5_4:+6517124 None:intergenic
CGGTCTAGTAGTTTCTGTGG+TGG 0.624970 5_4:+6517109 None:intergenic
ATATTCTTGTACATATATCA+GGG 0.625549 5_4:-6517011 Msa0833360:three_prime_UTR
GCTTTATGCAAGTACGCTAG+TGG 0.631872 5_4:-6517232 Msa0833360:CDS
TGATACATTGATGGATCGCA+TGG 0.638959 5_4:-6517671 Msa0833360:intron
TTGATGGGTAAGAAGAAACA+TGG 0.640651 5_4:+6518771 None:intergenic
CAAACTTGTTAAGATCAGCA+AGG 0.646856 5_4:+6518464 None:intergenic
GAAACTTGTTTCAGCCACGT+TGG 0.648131 5_4:-6518524 Msa0833360:CDS
TAGAGTCCAACAAGAACTGG+GGG 0.661646 5_4:-6518546 Msa0833360:CDS
TCTCGGTCTAGTAGTTTCTG+TGG 0.670722 5_4:+6517106 None:intergenic
CAGAAACTACTAGACCGAGA+TGG 0.678877 5_4:-6517103 Msa0833360:CDS
AAGTTTGAAGCTGAAGTGAG+GGG 0.680605 5_4:-6518448 Msa0833360:CDS
GTAGAGTCCAACAAGAACTG+GGG 0.685567 5_4:-6518547 Msa0833360:intron
TGGAGCACTCAACAATGGAG+AGG 0.687911 5_4:+6517129 None:intergenic
TGAGGAAGTAGATCTTACAT+GGG 0.697423 5_4:+6516836 None:intergenic
AATAACAGCAGCTGCCAACG+TGG 0.709124 5_4:+6518510 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTTTTTAATTTTGAT+TGG - chr5_4:6517054-6517073 Msa0833360:exon 10.0%
!!! TGTTATTTAAATTCTTTCTT+AGG - chr5_4:6517446-6517465 Msa0833360:CDS 15.0%
!! TAGCTTCTTAAAAAAAAAAA+CGG - chr5_4:6517593-6517612 Msa0833360:intron 15.0%
!! ACATATATTATATATAGAAG+TGG + chr5_4:6517681-6517700 None:intergenic 15.0%
!!! CTGAAATTATAATACTTTTT+AGG + chr5_4:6517932-6517951 None:intergenic 15.0%
!! TATTATTTGACTAATTATGT+AGG - chr5_4:6518432-6518451 Msa0833360:CDS 15.0%
!! ATGATAATTACTAATGCATT+AGG - chr5_4:6517356-6517375 Msa0833360:intron 20.0%
!! TGATAATTACTAATGCATTA+GGG - chr5_4:6517357-6517376 Msa0833360:intron 20.0%
!! GAAAGAATTTAAATAACACA+AGG + chr5_4:6517444-6517463 None:intergenic 20.0%
!! TTAATTAGTATGTGCTTAAT+TGG + chr5_4:6517486-6517505 None:intergenic 20.0%
!! TTAGATTATGTCATGAATAT+AGG + chr5_4:6517763-6517782 None:intergenic 20.0%
!!! TCTCTGATTTTATTTATATC+CGG - chr5_4:6518096-6518115 Msa0833360:intron 20.0%
!! ATATTCTTGTACATATATCA+GGG - chr5_4:6518675-6518694 Msa0833360:intron 20.0%
! AAGTACAAAAATTTGACATG+TGG - chr5_4:6516682-6516701 Msa0833360:three_prime_UTR 25.0%
!! TTCTAGTGTTATCCAATTTT+TGG + chr5_4:6516713-6516732 None:intergenic 25.0%
! AATATCTTCCTTATACATGA+TGG - chr5_4:6516855-6516874 Msa0833360:three_prime_UTR 25.0%
! TTAAACAATAATCATCCTCA+AGG - chr5_4:6517003-6517022 Msa0833360:three_prime_UTR 25.0%
! TTATTATGTACCGAAGTTTA+GGG - chr5_4:6517736-6517755 Msa0833360:intron 25.0%
! TTACAGGTATAAGTTAATAG+TGG - chr5_4:6517897-6517916 Msa0833360:intron 25.0%
! AAAGCTCGAACAATAAAATT+TGG + chr5_4:6518310-6518329 None:intergenic 25.0%
! CTGATATATGTACAAGAATA+TGG + chr5_4:6518676-6518695 None:intergenic 25.0%
! CATATTCTTGTACATATATC+AGG - chr5_4:6518674-6518693 Msa0833360:intron 25.0%
! TAGAATTACAATTGCCTAAA+AGG + chr5_4:6518993-6519012 None:intergenic 25.0%
! TAGGCAATTGTAATTCTATA+AGG - chr5_4:6518995-6519014 Msa0833360:five_prime_UTR 25.0%
TTAAAATGTGTGAGCTTTCA+CGG - chr5_4:6516617-6516636 Msa0833360:three_prime_UTR 30.0%
CAATTTCAACATTAAAGTGC+AGG + chr5_4:6516766-6516785 None:intergenic 30.0%
CTGCACTTTAATGTTGAAAT+TGG - chr5_4:6516764-6516783 Msa0833360:three_prime_UTR 30.0%
TGATATTCTAATGAGCAATG+AGG + chr5_4:6516818-6516837 None:intergenic 30.0%
ATTAAGTGCCATCATGTATA+AGG + chr5_4:6516866-6516885 None:intergenic 30.0%
TTGTAATGCAATGATGACTT+AGG - chr5_4:6517096-6517115 Msa0833360:CDS 30.0%
!! AAACTTGTTAAGATCAGCAA+GGG + chr5_4:6517224-6517243 None:intergenic 30.0%
AAATGAAAGAAACCAACTTG+AGG + chr5_4:6517306-6517325 None:intergenic 30.0%
TGCATGTGAATGAAAATTTC+AGG - chr5_4:6517402-6517421 Msa0833360:intron 30.0%
! TTTCAGGTAATCTTTCAATC+AGG - chr5_4:6517418-6517437 Msa0833360:intron 30.0%
GTTATTATGTACCGAAGTTT+AGG - chr5_4:6517735-6517754 Msa0833360:intron 30.0%
! ATGAGAGAATCAGATTTTAG+CGG - chr5_4:6517821-6517840 Msa0833360:CDS 30.0%
! GCATTCAAAGCAAATTTTAC+AGG - chr5_4:6517881-6517900 Msa0833360:CDS 30.0%
TGATTTGAGTGATACATTGA+TGG - chr5_4:6518006-6518025 Msa0833360:intron 30.0%
TTTATATCCGGTTTCATGTT+TGG - chr5_4:6518108-6518127 Msa0833360:intron 30.0%
TTATATCCGGTTTCATGTTT+GGG - chr5_4:6518109-6518128 Msa0833360:intron 30.0%
GCATATAATGTATGTCAATG+TGG - chr5_4:6518355-6518374 Msa0833360:intron 30.0%
TGACTTCACTAAATAGTTTC+TGG + chr5_4:6518823-6518842 None:intergenic 30.0%
GATTCTATATGCAGAAAATG+AGG + chr5_4:6518871-6518890 None:intergenic 30.0%
!! TAGAATCATGCTTCTTGTTT+TGG - chr5_4:6518884-6518903 Msa0833360:five_prime_UTR 30.0%
TAAAATGTGTGAGCTTTCAC+GGG - chr5_4:6516618-6516637 Msa0833360:three_prime_UTR 35.0%
ATTCTAATGAGCAATGAGGA+AGG + chr5_4:6516814-6516833 None:intergenic 35.0%
TGGTGAGAATTGATTGAAAG+TGG + chr5_4:6516898-6516917 None:intergenic 35.0%
! TTGATGGGTAAGAAGAAACA+TGG + chr5_4:6516918-6516937 None:intergenic 35.0%
TTGAAACCTTGGAACTTGAT+GGG + chr5_4:6516933-6516952 None:intergenic 35.0%
! TTTGAAACCTTGGAACTTGA+TGG + chr5_4:6516934-6516953 None:intergenic 35.0%
! ATGCATTGTGTTTGAAACCT+TGG + chr5_4:6516944-6516963 None:intergenic 35.0%
GTATAGTACTACTAACCTTG+AGG + chr5_4:6517021-6517040 None:intergenic 35.0%
!! CAAACTTGTTAAGATCAGCA+AGG + chr5_4:6517225-6517244 None:intergenic 35.0%
CATTAGGGTTACTATAATGC+AGG - chr5_4:6517372-6517391 Msa0833360:intron 35.0%
GAATATAGGTCCCTAAACTT+CGG + chr5_4:6517749-6517768 None:intergenic 35.0%
! GAAATTGGCTCTTCTGTATA+AGG + chr5_4:6517789-6517808 None:intergenic 35.0%
CATATCAGCAGATGTGAAAT+TGG + chr5_4:6517804-6517823 None:intergenic 35.0%
TTTAGCGGTTCTACTTTCAA+TGG - chr5_4:6517836-6517855 Msa0833360:CDS 35.0%
TACTTTCAATGGTGCATACA+TGG - chr5_4:6517847-6517866 Msa0833360:CDS 35.0%
!!! TTTTTTGCGCGACATGTTTT+AGG - chr5_4:6517980-6517999 Msa0833360:intron 35.0%
TTGGGATGTACTATGTATAC+AGG - chr5_4:6518127-6518146 Msa0833360:intron 35.0%
!! TGATTTTAGTGATGCTGTGT+TGG - chr5_4:6518238-6518257 Msa0833360:intron 35.0%
TGTTCGAGCTTTCACATTAT+AGG - chr5_4:6518318-6518337 Msa0833360:intron 35.0%
GTTCGAGCTTTCACATTATA+GGG - chr5_4:6518319-6518338 Msa0833360:intron 35.0%
AACAAACGACGAAATGCTTA+TGG - chr5_4:6518526-6518545 Msa0833360:CDS 35.0%
TGTACAAGAATATGGTCTGA+TGG + chr5_4:6518668-6518687 None:intergenic 35.0%
TATATCAGGGACAACAATTG+AGG - chr5_4:6518688-6518707 Msa0833360:CDS 35.0%
! TTGAGGCTATGTGTGATTTT+TGG - chr5_4:6518705-6518724 Msa0833360:CDS 35.0%
TACCCTATTTGTTCTGTGTT+GGG - chr5_4:6518776-6518795 Msa0833360:CDS 35.0%
TACCCAACACAGAACAAATA+GGG + chr5_4:6518781-6518800 None:intergenic 35.0%
ATACCCAACACAGAACAAAT+AGG + chr5_4:6518782-6518801 None:intergenic 35.0%
TGAGGAAGTAGATCTTACAT+GGG + chr5_4:6518853-6518872 None:intergenic 35.0%
ATGAGGAAGTAGATCTTACA+TGG + chr5_4:6518854-6518873 None:intergenic 35.0%
CAAAATTCCAAACTGCTGCA+AGG + chr5_4:6516658-6516677 None:intergenic 40.0%
CATGTGGCGTTACCAAAAAT+TGG - chr5_4:6516698-6516717 Msa0833360:three_prime_UTR 40.0%
TAAAGTGCAGGAAGTGATTG+TGG + chr5_4:6516754-6516773 None:intergenic 40.0%
TTCTTACCCATCAAGTTCCA+AGG - chr5_4:6516924-6516943 Msa0833360:three_prime_UTR 40.0%
TTGGACTCTACATTAGCACA+TGG + chr5_4:6517130-6517149 None:intergenic 40.0%
ATGTAGAGTCCAACAAGAAC+TGG - chr5_4:6517137-6517156 Msa0833360:CDS 40.0%
TGTAGAGTCCAACAAGAACT+GGG - chr5_4:6517138-6517157 Msa0833360:CDS 40.0%
! ACAAGTTTGAAGCTGAAGTG+AGG - chr5_4:6517236-6517255 Msa0833360:intron 40.0%
! CAAGTTTGAAGCTGAAGTGA+GGG - chr5_4:6517237-6517256 Msa0833360:intron 40.0%
! AAGTTTGAAGCTGAAGTGAG+GGG - chr5_4:6517238-6517257 Msa0833360:intron 40.0%
ATTGGATCAGCTGCTCAATT+TGG - chr5_4:6517271-6517290 Msa0833360:intron 40.0%
AGTCGCTAATTTAACCCACT+TGG - chr5_4:6517506-6517525 Msa0833360:CDS 40.0%
GTCGCTAATTTAACCCACTT+GGG - chr5_4:6517507-6517526 Msa0833360:CDS 40.0%
CTAATTTAACCCACTTGGGT+TGG - chr5_4:6517511-6517530 Msa0833360:CDS 40.0%
! TGATACATTGATGGATCGCA+TGG - chr5_4:6518015-6518034 Msa0833360:intron 40.0%
GTACATCCCAAACATGAAAC+CGG + chr5_4:6518118-6518137 None:intergenic 40.0%
AAGAATGGCATTCGTGAGAT+TGG + chr5_4:6518165-6518184 None:intergenic 40.0%
!! GAGGACTGTTCTAGAAAGAA+TGG + chr5_4:6518180-6518199 None:intergenic 40.0%
!! TTTCTAGAACAGTCCTCACA+CGG - chr5_4:6518183-6518202 Msa0833360:intron 40.0%
AAAATCAGCGCCTTCAATGA+TGG + chr5_4:6518225-6518244 None:intergenic 40.0%
GCTTTCACATTATAGGGTCA+TGG - chr5_4:6518325-6518344 Msa0833360:intron 40.0%
!! ATGTGGTCAAAGCGTTTTCT+TGG - chr5_4:6518372-6518391 Msa0833360:intron 40.0%
ACTTATCGAGCTTATGACTG+AGG - chr5_4:6518401-6518420 Msa0833360:CDS 40.0%
GTAAGCACAAGAGTGAGTTT+AGG - chr5_4:6518496-6518515 Msa0833360:CDS 40.0%
!! ACAAGAGTGAGTTTAGGTTG+CGG - chr5_4:6518502-6518521 Msa0833360:CDS 40.0%
! GTAACTATTTCGAGTCGCAA+AGG + chr5_4:6518630-6518649 None:intergenic 40.0%
TGCGACTCGAAATAGTTACT+TGG - chr5_4:6518631-6518650 Msa0833360:intron 40.0%
CTACCCTATTTGTTCTGTGT+TGG - chr5_4:6518775-6518794 Msa0833360:CDS 40.0%
TTCCTGTTTGAATCTGTGTG+TGG - chr5_4:6518962-6518981 Msa0833360:five_prime_UTR 40.0%
ATCCACACACAGATTCAAAC+AGG + chr5_4:6518967-6518986 None:intergenic 40.0%
! TGTGTGTGGATCTTCCTTTT+AGG - chr5_4:6518976-6518995 Msa0833360:five_prime_UTR 40.0%
AACTTCTCCTTGCAGCAGTT+TGG - chr5_4:6516648-6516667 Msa0833360:three_prime_UTR 45.0%
GTAGAGTCCAACAAGAACTG+GGG - chr5_4:6517139-6517158 Msa0833360:CDS 45.0%
TAGAGTCCAACAAGAACTGG+GGG - chr5_4:6517140-6517159 Msa0833360:CDS 45.0%
AAGTTTCCCCCAGTTCTTGT+TGG + chr5_4:6517149-6517168 None:intergenic 45.0%
! GAAACTTGTTTCAGCCACGT+TGG - chr5_4:6517162-6517181 Msa0833360:CDS 45.0%
GTGAGGGGTGAATTTGGTAT+TGG - chr5_4:6517253-6517272 Msa0833360:intron 45.0%
! AGTGGTCGTACCAGTTTTTG+GGG + chr5_4:6518269-6518288 None:intergenic 45.0%
! CAGTGGTCGTACCAGTTTTT+GGG + chr5_4:6518270-6518289 None:intergenic 45.0%
! TCAGTGGTCGTACCAGTTTT+TGG + chr5_4:6518271-6518290 None:intergenic 45.0%
TTAGCGATCGATGCAATCAG+TGG + chr5_4:6518287-6518306 None:intergenic 45.0%
GCTTTATGCAAGTACGCTAG+TGG - chr5_4:6518454-6518473 Msa0833360:CDS 45.0%
AGTGGCACAAATCCTGTAAC+AGG - chr5_4:6518472-6518491 Msa0833360:CDS 45.0%
CTTGTGCTTACTCCTGTTAC+AGG + chr5_4:6518487-6518506 None:intergenic 45.0%
ACTCAACAATGGAGAGGATG+GGG + chr5_4:6518554-6518573 None:intergenic 45.0%
CACTCAACAATGGAGAGGAT+GGG + chr5_4:6518555-6518574 None:intergenic 45.0%
TCTCGGTCTAGTAGTTTCTG+TGG + chr5_4:6518583-6518602 None:intergenic 45.0%
CAGAAACTACTAGACCGAGA+TGG - chr5_4:6518583-6518602 Msa0833360:intron 45.0%
CTTCATCGCAGAAACCATCT+CGG + chr5_4:6518600-6518619 None:intergenic 45.0%
!! ATATTAATAGTTAATATATT+TGG - chr5_4:6517329-6517348 Msa0833360:intron 5.0%
!! TATTAATAGTTAATATATTT+GGG - chr5_4:6517330-6517349 Msa0833360:intron 5.0%
AATAACAGCAGCTGCCAACG+TGG + chr5_4:6517179-6517198 None:intergenic 50.0%
GCTGAAGTGAGGGGTGAATT+TGG - chr5_4:6517247-6517266 Msa0833360:intron 50.0%
TGGATCAGCAGACCTCAAGT+TGG - chr5_4:6517291-6517310 Msa0833360:intron 50.0%
!! TTTAACCCACTTGGGTTGGC+TGG - chr5_4:6517515-6517534 Msa0833360:CDS 50.0%
!! TTAACCCACTTGGGTTGGCT+GGG - chr5_4:6517516-6517535 Msa0833360:CDS 50.0%
TGTCTCAGGTTCGATTCTCC+CGG - chr5_4:6517548-6517567 Msa0833360:intron 50.0%
TAGCCCACACAAAGTAGCAC+CGG + chr5_4:6517570-6517589 None:intergenic 50.0%
GTTGGACCTTCCCCAAAAAC+TGG - chr5_4:6518256-6518275 Msa0833360:intron 50.0%
!! GTCGTACCAGTTTTTGGGGA+AGG + chr5_4:6518265-6518284 None:intergenic 50.0%
GCACTCAACAATGGAGAGGA+TGG + chr5_4:6518556-6518575 None:intergenic 50.0%
! TGGAGCACTCAACAATGGAG+AGG + chr5_4:6518560-6518579 None:intergenic 50.0%
! TGTGGTGGAGCACTCAACAA+TGG + chr5_4:6518565-6518584 None:intergenic 50.0%
CGGTCTAGTAGTTTCTGTGG+TGG + chr5_4:6518580-6518599 None:intergenic 50.0%
! GGTTTCTGCGATGAAGCATC+AGG - chr5_4:6518604-6518623 Msa0833360:intron 50.0%
AAGACCCAGCCAACCCAAGT+GGG + chr5_4:6517523-6517542 None:intergenic 55.0%
CTGGGTCTTGAGTGTGTCTC+AGG - chr5_4:6517534-6517553 Msa0833360:CDS 55.0%
!! TCTCCCGGTGCTACTTTGTG+TGG - chr5_4:6517563-6517582 Msa0833360:intron 55.0%
!! CTCCCGGTGCTACTTTGTGT+GGG - chr5_4:6517564-6517583 Msa0833360:intron 55.0%
AGCCCACACAAAGTAGCACC+GGG + chr5_4:6517569-6517588 None:intergenic 55.0%
! CTTCAATGATGGCGCCTCCA+AGG + chr5_4:6518214-6518233 None:intergenic 55.0%
!! CTTGGAGGCGCCATCATTGA+AGG - chr5_4:6518212-6518231 Msa0833360:intron 55.0%
CAAGACCCAGCCAACCCAAG+TGG + chr5_4:6517524-6517543 None:intergenic 60.0%
GTCCTCACACGGAGTGACCT+TGG - chr5_4:6518194-6518213 Msa0833360:intron 60.0%
CTCCAAGGTCACTCCGTGTG+AGG + chr5_4:6518199-6518218 None:intergenic 60.0%
CTCACACGGAGTGACCTTGG+AGG - chr5_4:6518197-6518216 Msa0833360:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6516617 6519091 6516617 ID=Msa0833360;Name=Msa0833360
chr5_4 mRNA 6516617 6519091 6516617 ID=Msa0833360-mRNA-1;Parent=Msa0833360;Name=Msa0833360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=254|1|1|1|1|1|7|446|270
chr5_4 exon 6516617 6517254 6516617 ID=Msa0833360-mRNA-1:exon:2886;Parent=Msa0833360-mRNA-1
chr5_4 exon 6517431 6517559 6517431 ID=Msa0833360-mRNA-1:exon:2885;Parent=Msa0833360-mRNA-1
chr5_4 exon 6517672 6517706 6517672 ID=Msa0833360-mRNA-1:exon:2884;Parent=Msa0833360-mRNA-1
chr5_4 exon 6517806 6517912 6517806 ID=Msa0833360-mRNA-1:exon:2883;Parent=Msa0833360-mRNA-1
chr5_4 exon 6518285 6518314 6518285 ID=Msa0833360-mRNA-1:exon:2882;Parent=Msa0833360-mRNA-1
chr5_4 exon 6518400 6518565 6518400 ID=Msa0833360-mRNA-1:exon:2881;Parent=Msa0833360-mRNA-1
chr5_4 exon 6518684 6519091 6518684 ID=Msa0833360-mRNA-1:exon:2880;Parent=Msa0833360-mRNA-1
chr5_4 five_prime_UTR 6518838 6519091 6518838 ID=Msa0833360-mRNA-1:five_prime_utr;Parent=Msa0833360-mRNA-1
chr5_4 CDS 6518684 6518837 6518684 ID=Msa0833360-mRNA-1:cds;Parent=Msa0833360-mRNA-1
chr5_4 CDS 6518400 6518565 6518400 ID=Msa0833360-mRNA-1:cds;Parent=Msa0833360-mRNA-1
chr5_4 CDS 6518285 6518314 6518285 ID=Msa0833360-mRNA-1:cds;Parent=Msa0833360-mRNA-1
chr5_4 CDS 6517806 6517912 6517806 ID=Msa0833360-mRNA-1:cds;Parent=Msa0833360-mRNA-1
chr5_4 CDS 6517672 6517706 6517672 ID=Msa0833360-mRNA-1:cds;Parent=Msa0833360-mRNA-1
chr5_4 CDS 6517431 6517559 6517431 ID=Msa0833360-mRNA-1:cds;Parent=Msa0833360-mRNA-1
chr5_4 CDS 6517063 6517254 6517063 ID=Msa0833360-mRNA-1:cds;Parent=Msa0833360-mRNA-1
chr5_4 three_prime_UTR 6516617 6517062 6516617 ID=Msa0833360-mRNA-1:three_prime_utr;Parent=Msa0833360-mRNA-1
Gene Sequence

>Msa0833360

ATGATGGCACTTAATTCATTCACACCACTTTCAATCAATTCTCACCATGTTTCTTCTTACCCATCAAGTTCCAAGGTTTCAAACACAATGCATTTTCATTCAAAGTCATCTCAAGTCATTTGCAAAATGAGCTTAAACAATAATCATCCTCAAGAGTCCAACAAGAACTGGGGGAAACTTGTTTCAGCCACGTTGGCAGCTGCTGTTATTGTTTTCAGCTCTGACATGTCTGCCCTTGCTGATCTTAACAAGTTTGAAGCTGAAGTGAGGGGTGAATTTGGTATTGGATCAGCTGCTCAATTTGGATCAGCAGACCTCAAGAAAACAGTGCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACATCTGCTGATATGAGAGAATCAGATTTTAGCGGTTCTACTTTCAATGGTGCATACATGGAGAAAGCTGTCGCATTCAAAGCAAATTTTACAGGTGCTGATTTGAGTGATACATTGATGGATCGCATGGTTCTTAATGAAGCCAATCTCACGAATGCCATTCTTTCTAGAACAGTCCTCACACGGAGTGACCTTGGAGGCGCCATCATTGAAGGCGCTGATTTTAGTGATGCTGTGTTGGACCTTCCCCAAAAACTGGCTTTATGCAAGTACGCTAGTGGCACAAATCCTGTAACAGGAGTAAGCACAAGAGTGAGTTTAGGTTGCGGAAACAAACGACGAAATGCTTATGGCACCCCATCCTCTCCATTGTTGAGTGCTCCACCACAGAAACTACTAGACCGAGATGGTTTCTGCGATGAAGCATCAGGCCTTTGCGACTCGAAATAG

Protein sequence

>Msa0833360

MMALNSFTPLSINSHHVSSYPSSSKVSNTMHFHSKSSQVICKMSLNNNHPQESNKNWGKLVSATLAAAVIVFSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCGNKRRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK*