AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580410 MtrunA17_Chr5g0398981 96.654 269 2 1 2 270 1 262 0.0 526
Msa0580410 MtrunA17_Chr3g0127151 28.571 196 122 4 48 230 49 239 4.22e-12 64.3
Msa0580410 MtrunA17_Chr3g0112251 37.398 123 71 3 114 230 101 223 1.69e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580410 AT1G12250.2 83.010 206 35 0 65 270 1 206 1.78e-126 358
Msa0580410 AT1G12250.1 68.794 282 73 4 2 270 1 280 2.21e-122 350
Msa0580410 AT1G12250.3 85.517 145 21 0 126 270 1 145 1.28e-89 262
Msa0580410 AT2G44920.2 36.364 132 73 4 105 230 97 223 1.51e-11 63.2

Find 85 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATTACAATTGCCTAAA+AGG 0.171877 4_1:+85456384 None:intergenic
TGACTTCACTAAATAGTTTC+TGG 0.211662 4_1:+85456554 None:intergenic
TAGAATCATGCTTCTTGTTT+TGG 0.226864 4_1:-85456490 Msa0580410:three_prime_UTR
CTTGTGCTTACTCCTGTTAC+AGG 0.233017 4_1:+85456890 None:intergenic
CTGCACTTTAATGTTGAAAT+TGG 0.250096 4_1:-85458624 Msa0580410:five_prime_UTR
ATTGGATCAGCTGCTCAATT+TGG 0.252631 4_1:-85458117 Msa0580410:CDS
TAGGCAATTGTAATTCTATA+AGG 0.272604 4_1:-85456379 Msa0580410:three_prime_UTR
CATATCAGCAGATGTGAAAT+TGG 0.284272 4_1:+85457587 None:intergenic
CATATTCTTGTACATATATC+AGG 0.285862 4_1:-85456700 Msa0580410:three_prime_UTR
TGCATGTGAATGAAAATTTC+AGG 0.287923 4_1:-85457986 Msa0580410:intron
GCTGAAGTGAGGGGTGAATT+TGG 0.317964 4_1:-85458141 Msa0580410:CDS
ATACCCAACACAGAACAAAT+AGG 0.326723 4_1:+85456595 None:intergenic
TACCCTATTTGTTCTGTGTT+GGG 0.344695 4_1:-85456598 Msa0580410:three_prime_UTR
ATTAAGTGCCATCATGTATA+AGG 0.345082 4_1:+85458525 None:intergenic
AACTTCTCCTTGCAGCAGTT+TGG 0.360649 4_1:-85458740 Msa0580410:five_prime_UTR
ATGTAGAGTCCAACAAGAAC+TGG 0.378810 4_1:-85458251 Msa0580410:intron
AAGAATGGCATTCGTGAGAT+TGG 0.392860 4_1:+85457212 None:intergenic
AACAAACGACGAAATGCTTA+TGG 0.399210 4_1:-85456848 Msa0580410:CDS
TACTTTCAATGGTGCATACA+TGG 0.411365 4_1:-85457541 Msa0580410:CDS
AAGCGTCGGGAAGATCTATA+TGG 0.420957 4_1:+85456300 None:intergenic
CTGATATATGTACAAGAATA+TGG 0.421229 4_1:+85456701 None:intergenic
AGTGGCACAAATCCTGTAAC+AGG 0.423388 4_1:-85456902 Msa0580410:CDS
GTAAGCACAAGAGTGAGTTT+AGG 0.427943 4_1:-85456878 Msa0580410:CDS
TTAAAATGTGTGAGCTTTCA+CGG 0.428150 4_1:-85458771 Msa0580410:five_prime_UTR
TTTAGCGGTTCTACTTTCAA+TGG 0.429969 4_1:-85457552 Msa0580410:CDS
CTACCCTATTTGTTCTGTGT+TGG 0.433045 4_1:-85456599 Msa0580410:three_prime_UTR
ATGCATTGTGTTTGAAACCT+TGG 0.441509 4_1:+85458447 None:intergenic
TTTGAAACCTTGGAACTTGA+TGG 0.446789 4_1:+85458457 None:intergenic
CTTGGAGGCGCCATCATTGA+AGG 0.448018 4_1:-85457162 Msa0580410:CDS
TACCCAACACAGAACAAATA+GGG 0.452694 4_1:+85456596 None:intergenic
GTGAGGGGTGAATTTGGTAT+TGG 0.473683 4_1:-85458135 Msa0580410:CDS
TGCGACTCGAAATAGTTACT+TGG 0.477895 4_1:-85456743 Msa0580410:exon
ATCCACACACAGATTCAAAC+AGG 0.480012 4_1:+85456410 None:intergenic
GGTTTCTGCGATGAAGCATC+AGG 0.489768 4_1:-85456770 Msa0580410:CDS
AAAATCAGCGCCTTCAATGA+TGG 0.489950 4_1:+85457152 None:intergenic
ATGAGGAAGTAGATCTTACA+TGG 0.501856 4_1:+85456523 None:intergenic
CACTCAACAATGGAGAGGAT+GGG 0.509929 4_1:+85456822 None:intergenic
TGATTTGAGTGATACATTGA+TGG 0.510666 4_1:-85457382 Msa0580410:CDS
GTCCTCACACGGAGTGACCT+TGG 0.512623 4_1:-85457180 Msa0580410:CDS
GCACTCAACAATGGAGAGGA+TGG 0.517401 4_1:+85456821 None:intergenic
TTCTTACCCATCAAGTTCCA+AGG 0.522939 4_1:-85458464 Msa0580410:CDS
CTTCAATGATGGCGCCTCCA+AGG 0.525449 4_1:+85457163 None:intergenic
CAATTTCAACATTAAAGTGC+AGG 0.526052 4_1:+85458625 None:intergenic
TAAAATGTGTGAGCTTTCAC+GGG 0.533256 4_1:-85458770 Msa0580410:five_prime_UTR
GAGGACTGTTCTAGAAAGAA+TGG 0.538116 4_1:+85457197 None:intergenic
CAAGTTTGAAGCTGAAGTGA+GGG 0.545715 4_1:-85458151 Msa0580410:CDS
TGTAGAGTCCAACAAGAACT+GGG 0.551946 4_1:-85458250 Msa0580410:intron
AATATCTTCCTTATACATGA+TGG 0.554896 4_1:-85458533 Msa0580410:exon
CTCCAAGGTCACTCCGTGTG+AGG 0.564434 4_1:+85457178 None:intergenic
TAAAGTGCAGGAAGTGATTG+TGG 0.569334 4_1:+85458637 None:intergenic
TGGTGAGAATTGATTGAAAG+TGG 0.571719 4_1:+85458493 None:intergenic
TTCCTGTTTGAATCTGTGTG+TGG 0.573278 4_1:-85456412 Msa0580410:three_prime_UTR
GATTCTATATGCAGAAAATG+AGG 0.575957 4_1:+85456506 None:intergenic
TGTACAAGAATATGGTCTGA+TGG 0.577578 4_1:+85456709 None:intergenic
TTAAACAATAATCATCCTCA+AGG 0.584852 4_1:-85458385 Msa0580410:intron
TGATATTCTAATGAGCAATG+AGG 0.585986 4_1:+85458573 None:intergenic
TATATCAGGGACAACAATTG+AGG 0.586029 4_1:-85456686 Msa0580410:three_prime_UTR
ACTCAACAATGGAGAGGATG+GGG 0.589268 4_1:+85456823 None:intergenic
ACAAGTTTGAAGCTGAAGTG+AGG 0.602950 4_1:-85458152 Msa0580410:CDS
AAACTTGTTAAGATCAGCAA+GGG 0.603842 4_1:+85458167 None:intergenic
CTCACACGGAGTGACCTTGG+AGG 0.604487 4_1:-85457177 Msa0580410:CDS
GTAACTATTTCGAGTCGCAA+AGG 0.605296 4_1:+85456747 None:intergenic
CTTCATCGCAGAAACCATCT+CGG 0.606756 4_1:+85456777 None:intergenic
TTGAAACCTTGGAACTTGAT+GGG 0.610134 4_1:+85458458 None:intergenic
ACAAGAGTGAGTTTAGGTTG+CGG 0.613646 4_1:-85456872 Msa0580410:CDS
TTTCTAGAACAGTCCTCACA+CGG 0.614987 4_1:-85457191 Msa0580410:CDS
CAAAATTCCAAACTGCTGCA+AGG 0.615780 4_1:+85458733 None:intergenic
ATTCTAATGAGCAATGAGGA+AGG 0.615808 4_1:+85458577 None:intergenic
TGTGGTGGAGCACTCAACAA+TGG 0.624406 4_1:+85456812 None:intergenic
CGGTCTAGTAGTTTCTGTGG+TGG 0.624970 4_1:+85456797 None:intergenic
ATATTCTTGTACATATATCA+GGG 0.625549 4_1:-85456699 Msa0580410:three_prime_UTR
GCTTTATGCAAGTACGCTAG+TGG 0.631872 4_1:-85456920 Msa0580410:CDS
TGATACATTGATGGATCGCA+TGG 0.638959 4_1:-85457373 Msa0580410:intron
TTGATGGGTAAGAAGAAACA+TGG 0.640651 4_1:+85458473 None:intergenic
CAAACTTGTTAAGATCAGCA+AGG 0.646856 4_1:+85458166 None:intergenic
GAAACTTGTTTCAGCCACGT+TGG 0.648131 4_1:-85458226 Msa0580410:CDS
TAGAGTCCAACAAGAACTGG+GGG 0.661646 4_1:-85458248 Msa0580410:CDS
TCTCGGTCTAGTAGTTTCTG+TGG 0.670722 4_1:+85456794 None:intergenic
CAGAAACTACTAGACCGAGA+TGG 0.678877 4_1:-85456791 Msa0580410:CDS
AAGTTTGAAGCTGAAGTGAG+GGG 0.680605 4_1:-85458150 Msa0580410:CDS
GTAGAGTCCAACAAGAACTG+GGG 0.685567 4_1:-85458249 Msa0580410:intron
TGGAGCACTCAACAATGGAG+AGG 0.687911 4_1:+85456817 None:intergenic
AAGTACAAAAGTTTGACATG+TGG 0.694038 4_1:-85458706 Msa0580410:five_prime_UTR
TGAGGAAGTAGATCTTACAT+GGG 0.697423 4_1:+85456524 None:intergenic
AATAACAGCAGCTGCCAACG+TGG 0.709124 4_1:+85458212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTTTTTAATTTTGAT+TGG - chr4_1:85456742-85456761 Msa0580410:exon 10.0%
!!! TGTTATTTAAATTCTTTCTT+AGG - chr4_1:85457134-85457153 Msa0580410:CDS 15.0%
!! TAGCTTCTTAAAAAAAAAAA+CGG - chr4_1:85457281-85457300 Msa0580410:intron 15.0%
!! ACATATATTATATATAGAAG+TGG + chr4_1:85457369-85457388 None:intergenic 15.0%
!!! CTGAAATTATAATACTTTTT+AGG + chr4_1:85457620-85457639 None:intergenic 15.0%
!! TATTATTTGACTAATTATGT+AGG - chr4_1:85458134-85458153 Msa0580410:CDS 15.0%
!! ATGATAATTACTAATGCATT+AGG - chr4_1:85457044-85457063 Msa0580410:intron 20.0%
!! TGATAATTACTAATGCATTA+GGG - chr4_1:85457045-85457064 Msa0580410:intron 20.0%
!! GAAAGAATTTAAATAACACA+AGG + chr4_1:85457132-85457151 None:intergenic 20.0%
!! TTAATTAGTATGTGCTTAAT+TGG + chr4_1:85457174-85457193 None:intergenic 20.0%
!! TTATTATGTACAGAAGTTTA+GGG - chr4_1:85457424-85457443 Msa0580410:intron 20.0%
!! TTAGATTATGTCATGAATAT+AGG + chr4_1:85457451-85457470 None:intergenic 20.0%
!!! TCTCTGATTTTATTTATATC+CGG - chr4_1:85457798-85457817 Msa0580410:intron 20.0%
!! ATATTCTTGTACATATATCA+GGG - chr4_1:85458377-85458396 Msa0580410:intron 20.0%
!! TTCTAGTGTTATCCAATTTT+TGG + chr4_1:85456401-85456420 None:intergenic 25.0%
! AATATCTTCCTTATACATGA+TGG - chr4_1:85456543-85456562 Msa0580410:three_prime_UTR 25.0%
! TTAAACAATAATCATCCTCA+AGG - chr4_1:85456691-85456710 Msa0580410:three_prime_UTR 25.0%
! GTTATTATGTACAGAAGTTT+AGG - chr4_1:85457423-85457442 Msa0580410:intron 25.0%
! TTACAGGTATAAGTTAATAG+TGG - chr4_1:85457585-85457604 Msa0580410:CDS 25.0%
! AAAGCTCGAACAATAAAATT+TGG + chr4_1:85458012-85458031 None:intergenic 25.0%
! CTGATATATGTACAAGAATA+TGG + chr4_1:85458378-85458397 None:intergenic 25.0%
! CATATTCTTGTACATATATC+AGG - chr4_1:85458376-85458395 Msa0580410:intron 25.0%
! TAGAATTACAATTGCCTAAA+AGG + chr4_1:85458695-85458714 None:intergenic 25.0%
! TAGGCAATTGTAATTCTATA+AGG - chr4_1:85458697-85458716 Msa0580410:five_prime_UTR 25.0%
TTAAAATGTGTGAGCTTTCA+CGG - chr4_1:85456305-85456324 Msa0580410:three_prime_UTR 30.0%
AAGTACAAAAGTTTGACATG+TGG - chr4_1:85456370-85456389 Msa0580410:three_prime_UTR 30.0%
CAATTTCAACATTAAAGTGC+AGG + chr4_1:85456454-85456473 None:intergenic 30.0%
CTGCACTTTAATGTTGAAAT+TGG - chr4_1:85456452-85456471 Msa0580410:three_prime_UTR 30.0%
TGATATTCTAATGAGCAATG+AGG + chr4_1:85456506-85456525 None:intergenic 30.0%
ATTAAGTGCCATCATGTATA+AGG + chr4_1:85456554-85456573 None:intergenic 30.0%
TTGTAATGCAATGATGACTT+AGG - chr4_1:85456784-85456803 Msa0580410:CDS 30.0%
!! AAACTTGTTAAGATCAGCAA+GGG + chr4_1:85456912-85456931 None:intergenic 30.0%
AAATGAAAGAAACCAACTTG+AGG + chr4_1:85456994-85457013 None:intergenic 30.0%
TGCATGTGAATGAAAATTTC+AGG - chr4_1:85457090-85457109 Msa0580410:intron 30.0%
! TTTCAGGTAATCTTTCAATC+AGG - chr4_1:85457106-85457125 Msa0580410:intron 30.0%
! ATGAGAGAATCAGATTTTAG+CGG - chr4_1:85457509-85457528 Msa0580410:CDS 30.0%
! GCATTCAAAGCAAATTTTAC+AGG - chr4_1:85457569-85457588 Msa0580410:CDS 30.0%
TGATTTGAGTGATACATTGA+TGG - chr4_1:85457694-85457713 Msa0580410:intron 30.0%
TTTATATCCGGTTTCATGTT+TGG - chr4_1:85457810-85457829 Msa0580410:intron 30.0%
TTATATCCGGTTTCATGTTT+GGG - chr4_1:85457811-85457830 Msa0580410:intron 30.0%
GCATATAATGTATGTCAATG+TGG - chr4_1:85458057-85458076 Msa0580410:intron 30.0%
TGACTTCACTAAATAGTTTC+TGG + chr4_1:85458525-85458544 None:intergenic 30.0%
GATTCTATATGCAGAAAATG+AGG + chr4_1:85458573-85458592 None:intergenic 30.0%
!! TAGAATCATGCTTCTTGTTT+TGG - chr4_1:85458586-85458605 Msa0580410:five_prime_UTR 30.0%
TAAAATGTGTGAGCTTTCAC+GGG - chr4_1:85456306-85456325 Msa0580410:three_prime_UTR 35.0%
ATTCTAATGAGCAATGAGGA+AGG + chr4_1:85456502-85456521 None:intergenic 35.0%
TGGTGAGAATTGATTGAAAG+TGG + chr4_1:85456586-85456605 None:intergenic 35.0%
! TTGATGGGTAAGAAGAAACA+TGG + chr4_1:85456606-85456625 None:intergenic 35.0%
TTGAAACCTTGGAACTTGAT+GGG + chr4_1:85456621-85456640 None:intergenic 35.0%
! TTTGAAACCTTGGAACTTGA+TGG + chr4_1:85456622-85456641 None:intergenic 35.0%
! ATGCATTGTGTTTGAAACCT+TGG + chr4_1:85456632-85456651 None:intergenic 35.0%
GTATAGTACTACTAACCTTG+AGG + chr4_1:85456709-85456728 None:intergenic 35.0%
!! CAAACTTGTTAAGATCAGCA+AGG + chr4_1:85456913-85456932 None:intergenic 35.0%
CATTAGGGTTACTATAATGC+AGG - chr4_1:85457060-85457079 Msa0580410:intron 35.0%
! GAAATTGGCTCTTCTGTATA+AGG + chr4_1:85457477-85457496 None:intergenic 35.0%
CATATCAGCAGATGTGAAAT+TGG + chr4_1:85457492-85457511 None:intergenic 35.0%
TTTAGCGGTTCTACTTTCAA+TGG - chr4_1:85457524-85457543 Msa0580410:CDS 35.0%
TACTTTCAATGGTGCATACA+TGG - chr4_1:85457535-85457554 Msa0580410:CDS 35.0%
!!! TTTTTTGCGCGACATGTTTT+AGG - chr4_1:85457668-85457687 Msa0580410:intron 35.0%
TTGGGATGTACTATGTATAC+AGG - chr4_1:85457829-85457848 Msa0580410:intron 35.0%
!! TGATTTTAGTGATGCTGTGT+TGG - chr4_1:85457940-85457959 Msa0580410:intron 35.0%
TGTTCGAGCTTTCACATTAT+AGG - chr4_1:85458020-85458039 Msa0580410:intron 35.0%
GTTCGAGCTTTCACATTATA+GGG - chr4_1:85458021-85458040 Msa0580410:intron 35.0%
AACAAACGACGAAATGCTTA+TGG - chr4_1:85458228-85458247 Msa0580410:CDS 35.0%
TGTACAAGAATATGGTCTGA+TGG + chr4_1:85458370-85458389 None:intergenic 35.0%
TATATCAGGGACAACAATTG+AGG - chr4_1:85458390-85458409 Msa0580410:CDS 35.0%
! TTGAGGCTATGTGTGATTTT+TGG - chr4_1:85458407-85458426 Msa0580410:CDS 35.0%
TACCCTATTTGTTCTGTGTT+GGG - chr4_1:85458478-85458497 Msa0580410:CDS 35.0%
TACCCAACACAGAACAAATA+GGG + chr4_1:85458483-85458502 None:intergenic 35.0%
ATACCCAACACAGAACAAAT+AGG + chr4_1:85458484-85458503 None:intergenic 35.0%
TGAGGAAGTAGATCTTACAT+GGG + chr4_1:85458555-85458574 None:intergenic 35.0%
ATGAGGAAGTAGATCTTACA+TGG + chr4_1:85458556-85458575 None:intergenic 35.0%
CAAAATTCCAAACTGCTGCA+AGG + chr4_1:85456346-85456365 None:intergenic 40.0%
CATGTGGCGTTACCAAAAAT+TGG - chr4_1:85456386-85456405 Msa0580410:three_prime_UTR 40.0%
TAAAGTGCAGGAAGTGATTG+TGG + chr4_1:85456442-85456461 None:intergenic 40.0%
TTCTTACCCATCAAGTTCCA+AGG - chr4_1:85456612-85456631 Msa0580410:three_prime_UTR 40.0%
TTGGACTCTACATTAGCACA+TGG + chr4_1:85456818-85456837 None:intergenic 40.0%
ATGTAGAGTCCAACAAGAAC+TGG - chr4_1:85456825-85456844 Msa0580410:CDS 40.0%
TGTAGAGTCCAACAAGAACT+GGG - chr4_1:85456826-85456845 Msa0580410:CDS 40.0%
! ACAAGTTTGAAGCTGAAGTG+AGG - chr4_1:85456924-85456943 Msa0580410:intron 40.0%
! CAAGTTTGAAGCTGAAGTGA+GGG - chr4_1:85456925-85456944 Msa0580410:intron 40.0%
! AAGTTTGAAGCTGAAGTGAG+GGG - chr4_1:85456926-85456945 Msa0580410:intron 40.0%
ATTGGATCAGCTGCTCAATT+TGG - chr4_1:85456959-85456978 Msa0580410:intron 40.0%
AGTCGCTAATTTAACCCACT+TGG - chr4_1:85457194-85457213 Msa0580410:CDS 40.0%
GTCGCTAATTTAACCCACTT+GGG - chr4_1:85457195-85457214 Msa0580410:CDS 40.0%
CTAATTTAACCCACTTGGGT+TGG - chr4_1:85457199-85457218 Msa0580410:CDS 40.0%
! TGATACATTGATGGATCGCA+TGG - chr4_1:85457703-85457722 Msa0580410:intron 40.0%
GTACATCCCAAACATGAAAC+CGG + chr4_1:85457820-85457839 None:intergenic 40.0%
AAGAATGGCATTCGTGAGAT+TGG + chr4_1:85457867-85457886 None:intergenic 40.0%
!! GAGGACTGTTCTAGAAAGAA+TGG + chr4_1:85457882-85457901 None:intergenic 40.0%
!! TTTCTAGAACAGTCCTCACA+CGG - chr4_1:85457885-85457904 Msa0580410:intron 40.0%
AAAATCAGCGCCTTCAATGA+TGG + chr4_1:85457927-85457946 None:intergenic 40.0%
GCTTTCACATTATAGGGTCA+TGG - chr4_1:85458027-85458046 Msa0580410:intron 40.0%
!! ATGTGGTCAAAGCGTTTTCT+TGG - chr4_1:85458074-85458093 Msa0580410:intron 40.0%
ACTTATCGAGCTTATGACTG+AGG - chr4_1:85458103-85458122 Msa0580410:CDS 40.0%
GTAAGCACAAGAGTGAGTTT+AGG - chr4_1:85458198-85458217 Msa0580410:CDS 40.0%
!! ACAAGAGTGAGTTTAGGTTG+CGG - chr4_1:85458204-85458223 Msa0580410:CDS 40.0%
! GTAACTATTTCGAGTCGCAA+AGG + chr4_1:85458332-85458351 None:intergenic 40.0%
TGCGACTCGAAATAGTTACT+TGG - chr4_1:85458333-85458352 Msa0580410:intron 40.0%
CTACCCTATTTGTTCTGTGT+TGG - chr4_1:85458477-85458496 Msa0580410:CDS 40.0%
TTCCTGTTTGAATCTGTGTG+TGG - chr4_1:85458664-85458683 Msa0580410:five_prime_UTR 40.0%
ATCCACACACAGATTCAAAC+AGG + chr4_1:85458669-85458688 None:intergenic 40.0%
! TGTGTGTGGATCTTCCTTTT+AGG - chr4_1:85458678-85458697 Msa0580410:five_prime_UTR 40.0%
AACTTCTCCTTGCAGCAGTT+TGG - chr4_1:85456336-85456355 Msa0580410:three_prime_UTR 45.0%
GTAGAGTCCAACAAGAACTG+GGG - chr4_1:85456827-85456846 Msa0580410:CDS 45.0%
TAGAGTCCAACAAGAACTGG+GGG - chr4_1:85456828-85456847 Msa0580410:CDS 45.0%
AAGTTTCCCCCAGTTCTTGT+TGG + chr4_1:85456837-85456856 None:intergenic 45.0%
! GAAACTTGTTTCAGCCACGT+TGG - chr4_1:85456850-85456869 Msa0580410:CDS 45.0%
GTGAGGGGTGAATTTGGTAT+TGG - chr4_1:85456941-85456960 Msa0580410:intron 45.0%
! AGTGGTCGTACCAGTTTTTG+GGG + chr4_1:85457971-85457990 None:intergenic 45.0%
! CAGTGGTCGTACCAGTTTTT+GGG + chr4_1:85457972-85457991 None:intergenic 45.0%
! TCAGTGGTCGTACCAGTTTT+TGG + chr4_1:85457973-85457992 None:intergenic 45.0%
TTAGCGATCGATGCAATCAG+TGG + chr4_1:85457989-85458008 None:intergenic 45.0%
GCTTTATGCAAGTACGCTAG+TGG - chr4_1:85458156-85458175 Msa0580410:CDS 45.0%
AGTGGCACAAATCCTGTAAC+AGG - chr4_1:85458174-85458193 Msa0580410:CDS 45.0%
CTTGTGCTTACTCCTGTTAC+AGG + chr4_1:85458189-85458208 None:intergenic 45.0%
ACTCAACAATGGAGAGGATG+GGG + chr4_1:85458256-85458275 None:intergenic 45.0%
CACTCAACAATGGAGAGGAT+GGG + chr4_1:85458257-85458276 None:intergenic 45.0%
TCTCGGTCTAGTAGTTTCTG+TGG + chr4_1:85458285-85458304 None:intergenic 45.0%
CAGAAACTACTAGACCGAGA+TGG - chr4_1:85458285-85458304 Msa0580410:intron 45.0%
CTTCATCGCAGAAACCATCT+CGG + chr4_1:85458302-85458321 None:intergenic 45.0%
!! ATATTAATAGTTAATATATT+TGG - chr4_1:85457017-85457036 Msa0580410:intron 5.0%
!! TATTAATAGTTAATATATTT+GGG - chr4_1:85457018-85457037 Msa0580410:intron 5.0%
AATAACAGCAGCTGCCAACG+TGG + chr4_1:85456867-85456886 None:intergenic 50.0%
GCTGAAGTGAGGGGTGAATT+TGG - chr4_1:85456935-85456954 Msa0580410:intron 50.0%
TGGATCAGCAGACCTCAAGT+TGG - chr4_1:85456979-85456998 Msa0580410:intron 50.0%
!! TTTAACCCACTTGGGTTGGC+TGG - chr4_1:85457203-85457222 Msa0580410:CDS 50.0%
!! TTAACCCACTTGGGTTGGCT+GGG - chr4_1:85457204-85457223 Msa0580410:CDS 50.0%
TGTCTCAGGTTCGATTCTCC+CGG - chr4_1:85457236-85457255 Msa0580410:intron 50.0%
TAGCCCACACAAAGTAGCAC+CGG + chr4_1:85457258-85457277 None:intergenic 50.0%
GTTGGACCTTCCCCAAAAAC+TGG - chr4_1:85457958-85457977 Msa0580410:intron 50.0%
!! GTCGTACCAGTTTTTGGGGA+AGG + chr4_1:85457967-85457986 None:intergenic 50.0%
GCACTCAACAATGGAGAGGA+TGG + chr4_1:85458258-85458277 None:intergenic 50.0%
! TGGAGCACTCAACAATGGAG+AGG + chr4_1:85458262-85458281 None:intergenic 50.0%
! TGTGGTGGAGCACTCAACAA+TGG + chr4_1:85458267-85458286 None:intergenic 50.0%
CGGTCTAGTAGTTTCTGTGG+TGG + chr4_1:85458282-85458301 None:intergenic 50.0%
! GGTTTCTGCGATGAAGCATC+AGG - chr4_1:85458306-85458325 Msa0580410:intron 50.0%
AAGACCCAGCCAACCCAAGT+GGG + chr4_1:85457211-85457230 None:intergenic 55.0%
CTGGGTCTTGAGTGTGTCTC+AGG - chr4_1:85457222-85457241 Msa0580410:CDS 55.0%
!! TCTCCCGGTGCTACTTTGTG+TGG - chr4_1:85457251-85457270 Msa0580410:intron 55.0%
!! CTCCCGGTGCTACTTTGTGT+GGG - chr4_1:85457252-85457271 Msa0580410:intron 55.0%
AGCCCACACAAAGTAGCACC+GGG + chr4_1:85457257-85457276 None:intergenic 55.0%
! CTTCAATGATGGCGCCTCCA+AGG + chr4_1:85457916-85457935 None:intergenic 55.0%
!! CTTGGAGGCGCCATCATTGA+AGG - chr4_1:85457914-85457933 Msa0580410:intron 55.0%
CAAGACCCAGCCAACCCAAG+TGG + chr4_1:85457212-85457231 None:intergenic 60.0%
GTCCTCACACGGAGTGACCT+TGG - chr4_1:85457896-85457915 Msa0580410:intron 60.0%
CTCCAAGGTCACTCCGTGTG+AGG + chr4_1:85457901-85457920 None:intergenic 60.0%
CTCACACGGAGTGACCTTGG+AGG - chr4_1:85457899-85457918 Msa0580410:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 85456305 85458793 85456305 ID=Msa0580410;Name=Msa0580410
chr4_1 mRNA 85456305 85458793 85456305 ID=Msa0580410-mRNA-1;Parent=Msa0580410;Name=Msa0580410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=254|1|1|1|1|1|7|446|270
chr4_1 exon 85456305 85456942 85456305 ID=Msa0580410-mRNA-1:exon:31439;Parent=Msa0580410-mRNA-1
chr4_1 exon 85457119 85457247 85457119 ID=Msa0580410-mRNA-1:exon:31438;Parent=Msa0580410-mRNA-1
chr4_1 exon 85457374 85457408 85457374 ID=Msa0580410-mRNA-1:exon:31437;Parent=Msa0580410-mRNA-1
chr4_1 exon 85457508 85457614 85457508 ID=Msa0580410-mRNA-1:exon:31436;Parent=Msa0580410-mRNA-1
chr4_1 exon 85457987 85458016 85457987 ID=Msa0580410-mRNA-1:exon:31435;Parent=Msa0580410-mRNA-1
chr4_1 exon 85458102 85458267 85458102 ID=Msa0580410-mRNA-1:exon:31434;Parent=Msa0580410-mRNA-1
chr4_1 exon 85458386 85458793 85458386 ID=Msa0580410-mRNA-1:exon:31433;Parent=Msa0580410-mRNA-1
chr4_1 five_prime_UTR 85458540 85458793 85458540 ID=Msa0580410-mRNA-1:five_prime_utr;Parent=Msa0580410-mRNA-1
chr4_1 CDS 85458386 85458539 85458386 ID=Msa0580410-mRNA-1:cds;Parent=Msa0580410-mRNA-1
chr4_1 CDS 85458102 85458267 85458102 ID=Msa0580410-mRNA-1:cds;Parent=Msa0580410-mRNA-1
chr4_1 CDS 85457987 85458016 85457987 ID=Msa0580410-mRNA-1:cds;Parent=Msa0580410-mRNA-1
chr4_1 CDS 85457508 85457614 85457508 ID=Msa0580410-mRNA-1:cds;Parent=Msa0580410-mRNA-1
chr4_1 CDS 85457374 85457408 85457374 ID=Msa0580410-mRNA-1:cds;Parent=Msa0580410-mRNA-1
chr4_1 CDS 85457119 85457247 85457119 ID=Msa0580410-mRNA-1:cds;Parent=Msa0580410-mRNA-1
chr4_1 CDS 85456751 85456942 85456751 ID=Msa0580410-mRNA-1:cds;Parent=Msa0580410-mRNA-1
chr4_1 three_prime_UTR 85456305 85456750 85456305 ID=Msa0580410-mRNA-1:three_prime_utr;Parent=Msa0580410-mRNA-1
Gene Sequence

>Msa0580410

ATGATGGCACTTAATTCATTCACACCACTTTCAATCAATTCTCACCATGTTTCTTCTTACCCATCAAGTTCCAAGGTTTCAAACACAATGCATTTTCATTCAAAGTCATCTCAAGTCATTTGCAAAATGAGCTTAAACAATAATCATCCTCAAGAGTCCAACAAGAACTGGGGGAAACTTGTTTCAGCCACGTTGGCAGCTGCTGTTATTGTTTTCAGCTCTGACATGTCTGCCCTTGCTGATCTTAACAAGTTTGAAGCTGAAGTGAGGGGTGAATTTGGTATTGGATCAGCTGCTCAATTTGGATCAGCAGACCTCAAGAAAACAGTGCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACATCTGCTGATATGAGAGAATCAGATTTTAGCGGTTCTACTTTCAATGGTGCATACATGGAGAAAGCTGTCGCATTCAAAGCAAATTTTACAGGTGCTGATTTGAGTGATACATTGATGGATCGCATGGTTCTTAATGAAGCCAATCTCACGAATGCCATTCTTTCTAGAACAGTCCTCACACGGAGTGACCTTGGAGGCGCCATCATTGAAGGCGCTGATTTTAGTGATGCTGTGTTGGACCTTCCCCAAAAACTGGCTTTATGCAAGTACGCTAGTGGCACAAATCCTGTAACAGGAGTAAGCACAAGAGTGAGTTTAGGTTGCGGAAACAAACGACGAAATGCTTATGGCACCCCATCCTCTCCATTGTTGAGTGCTCCACCACAGAAACTACTAGACCGAGATGGTTTCTGCGATGAAGCATCAGGCCTTTGCGACTCGAAATAG

Protein sequence

>Msa0580410

MMALNSFTPLSINSHHVSSYPSSSKVSNTMHFHSKSSQVICKMSLNNNHPQESNKNWGKLVSATLAAAVIVFSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCGNKRRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK*