AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479360 MtrunA17_Chr3g0142181 96.606 383 8 1 1 383 5 382 0.0 738
Msa0479360 MtrunA17_Chr4g0024991 61.264 364 137 2 6 369 6 365 8.72e-143 410
Msa0479360 MtrunA17_Chr4g0075171 49.724 362 175 3 16 376 12 367 1.87e-113 335
Msa0479360 MtrunA17_Chr4g0056691 42.249 329 177 6 54 378 189 508 2.82e-78 251
Msa0479360 MtrunA17_Chr6g0462881 41.718 326 177 6 56 378 233 548 1.11e-75 245
Msa0479360 MtrunA17_Chr6g0462891 41.104 326 179 6 56 378 242 557 1.07e-74 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479360 AT1G62280.1 56.764 377 149 7 1 377 1 363 3.30e-144 414
Msa0479360 AT1G62262.1 56.065 371 142 5 1 371 1 350 3.27e-142 409
Msa0479360 AT4G27970.3 42.025 326 172 7 58 378 1 314 6.15e-76 239
Msa0479360 AT4G27970.5 42.025 326 172 7 58 378 1 314 6.15e-76 239
Msa0479360 AT5G24030.1 41.463 328 175 7 56 378 263 578 1.22e-74 244
Msa0479360 AT4G27970.1 41.768 328 174 7 56 378 148 463 1.72e-74 240
Msa0479360 AT4G27970.6 41.768 328 174 7 56 378 148 463 1.72e-74 240
Msa0479360 AT1G12480.1 42.727 330 175 7 54 378 191 511 1.19e-70 231
Msa0479360 AT5G24030.2 43.651 252 130 5 56 305 263 504 3.17e-60 202
Msa0479360 AT4G27970.4 44.309 246 125 5 56 299 148 383 4.70e-58 194
Msa0479360 AT4G27970.2 44.309 246 125 5 56 299 148 383 4.70e-58 194

Find 73 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTACTTATTTAATTCTA+TGG 0.220811 3_3:+84323033 Msa0479360:CDS
ATTAGGGATGGTGCATTATT+TGG 0.229252 3_3:+84323244 Msa0479360:CDS
TTTATCGGTAATAGGGAATT+TGG 0.236056 3_3:+84323163 Msa0479360:CDS
ACAAGTCATTTATCGGTAAT+AGG 0.252404 3_3:+84323155 Msa0479360:CDS
AGAGAATGAGCATTAGAATA+TGG 0.254966 3_3:-84324897 None:intergenic
ACTTGTTAAGGATCTTATTA+AGG 0.267921 3_3:-84322679 None:intergenic
GACAAGCTCAATGTTTGATT+TGG 0.274170 3_3:-84322589 None:intergenic
AATTAAATAAGTAATGGTTT+TGG 0.294154 3_3:-84323027 None:intergenic
TGTTTGATTTGGAAATTTCT+TGG 0.315791 3_3:-84322578 None:intergenic
GTTGAATTAAACAGGTTTGC+AGG 0.323138 3_3:+84324752 Msa0479360:intron
GATTTGCTTGTGTCGTTTGT+TGG 0.331802 3_3:-84322786 None:intergenic
TTCTTGTTCTTTGCAGCACC+TGG 0.340908 3_3:+84323338 Msa0479360:CDS
GTTCTCGACGTTAAAATTTA+CGG 0.348977 3_3:+84323080 Msa0479360:CDS
CCAGTGACATGAAGAGGAAT+AGG 0.350256 3_3:-84323433 None:intergenic
AGCACCTGGTGTGGCTAGTC+TGG 0.355273 3_3:+84323352 Msa0479360:CDS
CAAGTCATTTATCGGTAATA+GGG 0.357344 3_3:+84323156 Msa0479360:CDS
AGCGCAAGCTGCAGCAGAAA+TGG 0.373631 3_3:+84323190 Msa0479360:CDS
CTTGCAATGGGATCGTTATC+TGG 0.374425 3_3:-84324988 None:intergenic
GCCATAGCAAGTACGGTAAC+AGG 0.385140 3_3:-84324835 None:intergenic
GCAAAGAACAAGAAGAAAAC+TGG 0.389582 3_3:-84323329 None:intergenic
TTCAGAATTAGCCTCTCATT+TGG 0.402241 3_3:+84322729 Msa0479360:CDS
TTCTCATAGATCTCTTGAAT+AGG 0.405405 3_3:-84324780 None:intergenic
TTGGTGGCCAAGCATTACTA+TGG 0.413564 3_3:+84322748 Msa0479360:CDS
CTGGTGTGGCTAGTCTGGCT+TGG 0.416273 3_3:+84323357 Msa0479360:CDS
TACTTATTTAATTCTATGGT+GGG 0.421001 3_3:+84323037 Msa0479360:CDS
TACGGTCAGTGGTTTACTAA+AGG 0.421425 3_3:+84323098 Msa0479360:CDS
TCTCATAGATCTCTTGAATA+GGG 0.431380 3_3:-84324779 None:intergenic
ACGGTCAGTGGTTTACTAAA+GGG 0.432203 3_3:+84323099 Msa0479360:CDS
GTTTGATTTGGAAATTTCTT+GGG 0.435748 3_3:-84322577 None:intergenic
TATTCTAATGCTCATTCTCT+TGG 0.436966 3_3:+84324900 Msa0479360:CDS
TCCTGTTACCGTACTTGCTA+TGG 0.437754 3_3:+84324834 Msa0479360:CDS
GAATCCGACAAGTCATTTAT+CGG 0.442075 3_3:+84323148 Msa0479360:CDS
CTGGCTTGGGAATCTATTGT+TGG 0.443643 3_3:+84323371 Msa0479360:CDS
TGGTGTGGCTAGTCTGGCTT+GGG 0.445650 3_3:+84323358 Msa0479360:CDS
CCTATTCCTCTTCATGTCAC+TGG 0.453775 3_3:+84323433 Msa0479360:CDS
ATTACCGATAAATGACTTGT+CGG 0.460048 3_3:-84323152 None:intergenic
GAGAATGAGCATTAGAATAT+GGG 0.464878 3_3:-84324896 None:intergenic
GCGCAAGCTGCAGCAGAAAT+GGG 0.477434 3_3:+84323191 Msa0479360:CDS
ATCGTCTTCCTGCGTTGTTA+AGG 0.478539 3_3:+84323306 Msa0479360:CDS
ACACTTTATCAAAGGTTGTC+TGG 0.479220 3_3:+84323278 Msa0479360:CDS
TCGGTAATAGGGAATTTGGT+TGG 0.484237 3_3:+84323167 Msa0479360:CDS
CCATAGAATTAAATAAGTAA+TGG 0.499411 3_3:-84323033 None:intergenic
AACAATGAGGATGCTTGCAA+TGG 0.505203 3_3:-84325001 None:intergenic
AGAATTAGCCTCTCATTTGG+TGG 0.507666 3_3:+84322732 Msa0479360:CDS
ACGTTAAAATTTACGGTCAG+TGG 0.514110 3_3:+84323087 Msa0479360:CDS
ATAGATCTCTTGAATAGGGC+TGG 0.514231 3_3:-84324775 None:intergenic
CAGTGACATGAAGAGGAATA+GGG 0.514535 3_3:-84323432 None:intergenic
TGTAGAAGCCATAGCAAGTA+CGG 0.530020 3_3:-84324842 None:intergenic
ACAATGAGGATGCTTGCAAT+GGG 0.531962 3_3:-84325000 None:intergenic
AATAGAAACCATGAAATCCA+TGG 0.536211 3_3:-84322978 None:intergenic
TTACTTATTTAATTCTATGG+TGG 0.536757 3_3:+84323036 Msa0479360:CDS
AAGGTTTAATGTTGCATGGT+GGG 0.544626 3_3:+84324801 Msa0479360:CDS
TATATACCAGTGACATGAAG+AGG 0.567022 3_3:-84323439 None:intergenic
AAGCTGCAGCAGAAATGGGT+TGG 0.584214 3_3:+84323195 Msa0479360:CDS
AGCAAGTACGGTAACAGGAA+AGG 0.591295 3_3:-84324830 None:intergenic
TGTTTGTGACACTTTATCAA+AGG 0.592867 3_3:+84323270 Msa0479360:CDS
TATTCAAGAGATCTATGAGA+AGG 0.595617 3_3:+84324782 Msa0479360:CDS
TTTAACGTCGAGAACAACCA+CGG 0.596366 3_3:-84323072 None:intergenic
GTTCTTTGCAGCACCTGGTG+TGG 0.596453 3_3:+84323343 Msa0479360:CDS
CAAGCCAGACTAGCCACACC+AGG 0.597287 3_3:-84323356 None:intergenic
AGTACTATGAAAACAGAGGA+AGG 0.598002 3_3:-84322831 None:intergenic
GAAGAATTCTTACACCATGT+AGG 0.606055 3_3:+84322936 Msa0479360:CDS
AGTGGTTTACTAAAGGGAAG+AGG 0.608283 3_3:+84323105 Msa0479360:CDS
AATAAATGAATTAAACAATG+AGG 0.610002 3_3:-84325014 None:intergenic
AATTATGCACAACAAGTCAA+AGG 0.620636 3_3:+84324865 Msa0479360:CDS
TGAGAAGGTTTAATGTTGCA+TGG 0.624928 3_3:+84324797 Msa0479360:CDS
ATGCTTGGCCACCAAATGAG+AGG 0.628009 3_3:-84322740 None:intergenic
AAAGATAGTTAACTCCTACA+TGG 0.643665 3_3:-84322950 None:intergenic
TTAACGTCGAGAACAACCAC+GGG 0.646771 3_3:-84323071 None:intergenic
CTTTATCAAAGGTTGTCTGG+TGG 0.678296 3_3:+84323281 Msa0479360:CDS
AAAACTGGCCTTAACAACGC+AGG 0.680269 3_3:-84323314 None:intergenic
GAAGGTTTAATGTTGCATGG+TGG 0.712532 3_3:+84324800 Msa0479360:CDS
CCATAGTACTATGAAAACAG+AGG 0.718627 3_3:-84322835 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAATATTTCAAAATTG+AGG + chr3_3:84323788-84323807 Msa0479360:intron 10.0%
!!! AATTAGTATTTTGAATTATA+TGG + chr3_3:84324494-84324513 Msa0479360:intron 10.0%
!! ATGTAACTTAATTAATTATT+AGG - chr3_3:84324687-84324706 None:intergenic 10.0%
!! TAAATATTAATCAATATTTC+AGG - chr3_3:84324726-84324745 None:intergenic 10.0%
!!! TTTTTTTAGTATACTTGTTA+AGG - chr3_3:84322694-84322713 None:intergenic 15.0%
!!! ATGTTTATTTTTCTTTAAGA+TGG + chr3_3:84322908-84322927 Msa0479360:CDS 15.0%
!!! ATTAAATAAGTAATGGTTTT+GGG - chr3_3:84323029-84323048 None:intergenic 15.0%
!!! AATTAAATAAGTAATGGTTT+TGG - chr3_3:84323030-84323049 None:intergenic 15.0%
!!! AATAAATGATGATTTTGTAA+AGG - chr3_3:84323537-84323556 None:intergenic 15.0%
!! AACAATTTATAATATAGTCA+TGG + chr3_3:84323653-84323672 Msa0479360:intron 15.0%
!!! TATAAAGTCACTTATAATTT+TGG + chr3_3:84323685-84323704 Msa0479360:intron 15.0%
!! AATAAATCATTATCTTCATA+GGG - chr3_3:84323768-84323787 None:intergenic 15.0%
!! AAATAAATCATTATCTTCAT+AGG - chr3_3:84323769-84323788 None:intergenic 15.0%
!! TTTGTACCAAAAAAAAAATA+AGG - chr3_3:84324335-84324354 None:intergenic 15.0%
!!! TATTTTTTTTTTGGTACAAA+TGG + chr3_3:84324335-84324354 Msa0479360:intron 15.0%
!! ATTAAGTTACATAAAATTCA+AGG + chr3_3:84324695-84324714 Msa0479360:intron 15.0%
!! TAATTTATGTTGAATTAAAC+AGG + chr3_3:84324744-84324763 Msa0479360:intron 15.0%
!! AGAAAAATAAACATCTTAAG+AGG - chr3_3:84322902-84322921 None:intergenic 20.0%
!! CCATAGAATTAAATAAGTAA+TGG - chr3_3:84323036-84323055 None:intergenic 20.0%
!! CCATTACTTATTTAATTCTA+TGG + chr3_3:84323033-84323052 Msa0479360:CDS 20.0%
!! TTACTTATTTAATTCTATGG+TGG + chr3_3:84323036-84323055 Msa0479360:CDS 20.0%
!! TACTTATTTAATTCTATGGT+GGG + chr3_3:84323037-84323056 Msa0479360:CDS 20.0%
!! ATCATCATTTATTAATGATG+TGG + chr3_3:84323544-84323563 Msa0479360:intron 20.0%
!!! TTTTACAAAGTATGATAGAA+AGG + chr3_3:84323600-84323619 Msa0479360:intron 20.0%
!! AACAACTACAGTTTAAATTA+GGG - chr3_3:84323720-84323739 None:intergenic 20.0%
!!! TTTTACAAAAAAATTCTGGT+AGG + chr3_3:84324200-84324219 Msa0479360:intron 20.0%
!! CATGTACTTATAAATTGATA+GGG - chr3_3:84324247-84324266 None:intergenic 20.0%
!!! AAAGGTCCTTATTTTTTTTT+TGG + chr3_3:84324326-84324345 Msa0479360:intron 20.0%
!! AAATTCAAACTTATCAATTG+AGG - chr3_3:84324541-84324560 None:intergenic 20.0%
!!! GTTTGATTTGGAAATTTCTT+GGG - chr3_3:84322580-84322599 None:intergenic 25.0%
!!! TGTTTGATTTGGAAATTTCT+TGG - chr3_3:84322581-84322600 None:intergenic 25.0%
!! ACTTGTTAAGGATCTTATTA+AGG - chr3_3:84322682-84322701 None:intergenic 25.0%
! ATACTAAAAAAACTTCATGC+AGG + chr3_3:84322702-84322721 Msa0479360:CDS 25.0%
! CAACAACTACAGTTTAAATT+AGG - chr3_3:84323721-84323740 None:intergenic 25.0%
! TCAACAAAGTTGTCATTAAA+TGG - chr3_3:84324004-84324023 None:intergenic 25.0%
! TCATTTCTATTAGACAAAAC+AGG + chr3_3:84324156-84324175 Msa0479360:intron 25.0%
!! GGCTTTTTACAAAAAAATTC+TGG + chr3_3:84324196-84324215 Msa0479360:intron 25.0%
! GCATGTACTTATAAATTGAT+AGG - chr3_3:84324248-84324267 None:intergenic 25.0%
!!! TTTTTTTGGTACAAATGGAA+AGG + chr3_3:84324340-84324359 Msa0479360:intron 25.0%
! CAAGTAACTGTCAATTAATA+AGG - chr3_3:84324367-84324386 None:intergenic 25.0%
! TTGATAAGTTTGAATTTACC+CGG + chr3_3:84324544-84324563 Msa0479360:intron 25.0%
!!! TAGAGATTAATCTTTAGAAC+CGG - chr3_3:84324566-84324585 None:intergenic 25.0%
! TTAATCTCTACATAGAGAAT+AGG + chr3_3:84324576-84324595 Msa0479360:intron 25.0%
!!! AGGTTGATTTTTGGTTATTG+TGG - chr3_3:84322638-84322657 None:intergenic 30.0%
! ATGTTTTCCATAGTAATGCT+TGG - chr3_3:84322758-84322777 None:intergenic 30.0%
AAAGATAGTTAACTCCTACA+TGG - chr3_3:84322953-84322972 None:intergenic 30.0%
AATAGAAACCATGAAATCCA+TGG - chr3_3:84322981-84323000 None:intergenic 30.0%
GTTCTCGACGTTAAAATTTA+CGG + chr3_3:84323080-84323099 Msa0479360:CDS 30.0%
! ATTACCGATAAATGACTTGT+CGG - chr3_3:84323155-84323174 None:intergenic 30.0%
ACAAGTCATTTATCGGTAAT+AGG + chr3_3:84323155-84323174 Msa0479360:CDS 30.0%
CAAGTCATTTATCGGTAATA+GGG + chr3_3:84323156-84323175 Msa0479360:CDS 30.0%
TTTATCGGTAATAGGGAATT+TGG + chr3_3:84323163-84323182 Msa0479360:CDS 30.0%
!! CTGTGTGTTTGTTTTCATTA+GGG + chr3_3:84323228-84323247 Msa0479360:CDS 30.0%
TGTTTGTGACACTTTATCAA+AGG + chr3_3:84323270-84323289 Msa0479360:CDS 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3_3:84324055-84324074 Msa0479360:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - chr3_3:84324127-84324146 None:intergenic 30.0%
TAGGGACATTCTATATTGTA+CGG - chr3_3:84324229-84324248 None:intergenic 30.0%
! CTTGATTTTGTGCTGTAATT+TGG + chr3_3:84324290-84324309 Msa0479360:intron 30.0%
TAGATAACATGACTTGACAT+TGG - chr3_3:84324446-84324465 None:intergenic 30.0%
ACTTATCAATTGAGGTTAAG+TGG - chr3_3:84324533-84324552 None:intergenic 30.0%
!! AGAGATTAATCTTTAGAACC+GGG - chr3_3:84324565-84324584 None:intergenic 30.0%
TCTCATAGATCTCTTGAATA+GGG - chr3_3:84324782-84324801 None:intergenic 30.0%
TTCTCATAGATCTCTTGAAT+AGG - chr3_3:84324783-84324802 None:intergenic 30.0%
TATTCAAGAGATCTATGAGA+AGG + chr3_3:84324782-84324801 Msa0479360:CDS 30.0%
AATTATGCACAACAAGTCAA+AGG + chr3_3:84324865-84324884 Msa0479360:CDS 30.0%
GAGAATGAGCATTAGAATAT+GGG - chr3_3:84324899-84324918 None:intergenic 30.0%
AGAGAATGAGCATTAGAATA+TGG - chr3_3:84324900-84324919 None:intergenic 30.0%
TATTCTAATGCTCATTCTCT+TGG + chr3_3:84324900-84324919 Msa0479360:CDS 30.0%
GACAAGCTCAATGTTTGATT+TGG - chr3_3:84322592-84322611 None:intergenic 35.0%
!! CCATTAACGAGGTTGATTTT+TGG - chr3_3:84322647-84322666 None:intergenic 35.0%
CCAAAAATCAACCTCGTTAA+TGG + chr3_3:84322644-84322663 Msa0479360:CDS 35.0%
! TTCAGAATTAGCCTCTCATT+TGG + chr3_3:84322729-84322748 Msa0479360:CDS 35.0%
AGTACTATGAAAACAGAGGA+AGG - chr3_3:84322834-84322853 None:intergenic 35.0%
CCATAGTACTATGAAAACAG+AGG - chr3_3:84322838-84322857 None:intergenic 35.0%
! CCTCTGTTTTCATAGTACTA+TGG + chr3_3:84322835-84322854 Msa0479360:CDS 35.0%
GAAGAATTCTTACACCATGT+AGG + chr3_3:84322936-84322955 Msa0479360:CDS 35.0%
! TTAACTATCTTTTCGCTCCA+TGG + chr3_3:84322961-84322980 Msa0479360:CDS 35.0%
!!! AATTCTATGGTGGGTTTTCA+CGG + chr3_3:84323046-84323065 Msa0479360:CDS 35.0%
ACGTTAAAATTTACGGTCAG+TGG + chr3_3:84323087-84323106 Msa0479360:CDS 35.0%
!!! GAAGAGGTCATTTTTAACGA+CGG + chr3_3:84323121-84323140 Msa0479360:CDS 35.0%
GAATCCGACAAGTCATTTAT+CGG + chr3_3:84323148-84323167 Msa0479360:CDS 35.0%
!! GCTGTGTGTTTGTTTTCATT+AGG + chr3_3:84323227-84323246 Msa0479360:CDS 35.0%
!! GTGTTTGTTTTCATTAGGGA+TGG + chr3_3:84323232-84323251 Msa0479360:CDS 35.0%
ATTAGGGATGGTGCATTATT+TGG + chr3_3:84323244-84323263 Msa0479360:CDS 35.0%
ACACTTTATCAAAGGTTGTC+TGG + chr3_3:84323278-84323297 Msa0479360:CDS 35.0%
GCAAAGAACAAGAAGAAAAC+TGG - chr3_3:84323332-84323351 None:intergenic 35.0%
TATATACCAGTGACATGAAG+AGG - chr3_3:84323442-84323461 None:intergenic 35.0%
GTAAACCTTGTCATTACTTG+AGG - chr3_3:84323841-84323860 None:intergenic 35.0%
AGCAAGAAGTGAGAAAAACA+AGG - chr3_3:84324030-84324049 None:intergenic 35.0%
!! TTGTTTTTCTCACTTCTTGC+TGG + chr3_3:84324029-84324048 Msa0479360:intron 35.0%
TTCTTGCTGGTCAAAAACAA+TGG + chr3_3:84324042-84324061 Msa0479360:intron 35.0%
AGAGAGAAAAAGGAAAAGAG+AGG + chr3_3:84324065-84324084 Msa0479360:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + chr3_3:84324122-84324141 Msa0479360:intron 35.0%
!! AAAGCCAATAGTGTTGACTA+AGG - chr3_3:84324182-84324201 None:intergenic 35.0%
TGTAATTTGGACGTACAAGA+TGG + chr3_3:84324303-84324322 Msa0479360:intron 35.0%
GTTGAATTAAACAGGTTTGC+AGG + chr3_3:84324752-84324771 Msa0479360:intron 35.0%
TGAGAAGGTTTAATGTTGCA+TGG + chr3_3:84324797-84324816 Msa0479360:CDS 35.0%
AAGGTTTAATGTTGCATGGT+GGG + chr3_3:84324801-84324820 Msa0479360:CDS 35.0%
! TCGTTTTCTGACCATTAACG+AGG - chr3_3:84322658-84322677 None:intergenic 40.0%
! AGAATTAGCCTCTCATTTGG+TGG + chr3_3:84322732-84322751 Msa0479360:CDS 40.0%
!! GATTTGCTTGTGTCGTTTGT+TGG - chr3_3:84322789-84322808 None:intergenic 40.0%
! TTTTCGCTCCATGGATTTCA+TGG + chr3_3:84322970-84322989 Msa0479360:CDS 40.0%
!!! ATGGTTTTGGGAGCTATGAA+TGG - chr3_3:84323017-84323036 None:intergenic 40.0%
TTTAACGTCGAGAACAACCA+CGG - chr3_3:84323075-84323094 None:intergenic 40.0%
TACGGTCAGTGGTTTACTAA+AGG + chr3_3:84323098-84323117 Msa0479360:CDS 40.0%
ACGGTCAGTGGTTTACTAAA+GGG + chr3_3:84323099-84323118 Msa0479360:CDS 40.0%
AGTGGTTTACTAAAGGGAAG+AGG + chr3_3:84323105-84323124 Msa0479360:CDS 40.0%
TCGGTAATAGGGAATTTGGT+TGG + chr3_3:84323167-84323186 Msa0479360:CDS 40.0%
CTTTATCAAAGGTTGTCTGG+TGG + chr3_3:84323281-84323300 Msa0479360:CDS 40.0%
!! GGACAAAAAGAAGAGCATCT+TGG - chr3_3:84323414-84323433 None:intergenic 40.0%
CAGTGACATGAAGAGGAATA+GGG - chr3_3:84323435-84323454 None:intergenic 40.0%
CTCTTCCTCAAGTAATGACA+AGG + chr3_3:84323833-84323852 Msa0479360:intron 40.0%
GTAATGACAAGGTTTACAGC+TGG + chr3_3:84323844-84323863 Msa0479360:intron 40.0%
TTTGGACGTACAAGATGGAA+AGG + chr3_3:84324308-84324327 Msa0479360:intron 40.0%
GTTGGACAGATTGTAGGAAA+AGG - chr3_3:84324422-84324441 None:intergenic 40.0%
ATTGGAGTTGGACAGATTGT+AGG - chr3_3:84324428-84324447 None:intergenic 40.0%
ACATGACTTGACATTGGAGT+TGG - chr3_3:84324440-84324459 None:intergenic 40.0%
ATAGATCTCTTGAATAGGGC+TGG - chr3_3:84324778-84324797 None:intergenic 40.0%
GAAGGTTTAATGTTGCATGG+TGG + chr3_3:84324800-84324819 Msa0479360:CDS 40.0%
TGTAGAAGCCATAGCAAGTA+CGG - chr3_3:84324845-84324864 None:intergenic 40.0%
ACAATGAGGATGCTTGCAAT+GGG - chr3_3:84325003-84325022 None:intergenic 40.0%
AACAATGAGGATGCTTGCAA+TGG - chr3_3:84325004-84325023 None:intergenic 40.0%
! TTGGTGGCCAAGCATTACTA+TGG + chr3_3:84322748-84322767 Msa0479360:CDS 45.0%
TTAACGTCGAGAACAACCAC+GGG - chr3_3:84323074-84323093 None:intergenic 45.0%
ATCGTCTTCCTGCGTTGTTA+AGG + chr3_3:84323306-84323325 Msa0479360:CDS 45.0%
!! AAAACTGGCCTTAACAACGC+AGG - chr3_3:84323317-84323336 None:intergenic 45.0%
TTCTTGTTCTTTGCAGCACC+TGG + chr3_3:84323338-84323357 Msa0479360:CDS 45.0%
!! CTGGCTTGGGAATCTATTGT+TGG + chr3_3:84323371-84323390 Msa0479360:CDS 45.0%
CCAGTGACATGAAGAGGAAT+AGG - chr3_3:84323436-84323455 None:intergenic 45.0%
CCTATTCCTCTTCATGTCAC+TGG + chr3_3:84323433-84323452 Msa0479360:CDS 45.0%
CAGGCCTTAGTCAACACTAT+TGG + chr3_3:84324175-84324194 Msa0479360:intron 45.0%
AGCAAGTACGGTAACAGGAA+AGG - chr3_3:84324833-84324852 None:intergenic 45.0%
! TCCTGTTACCGTACTTGCTA+TGG + chr3_3:84324834-84324853 Msa0479360:CDS 45.0%
CTTGCAATGGGATCGTTATC+TGG - chr3_3:84324991-84325010 None:intergenic 45.0%
ATGCTTGGCCACCAAATGAG+AGG - chr3_3:84322743-84322762 None:intergenic 50.0%
AAGCTGCAGCAGAAATGGGT+TGG + chr3_3:84323195-84323214 Msa0479360:CDS 50.0%
GCCATAGCAAGTACGGTAAC+AGG - chr3_3:84324838-84324857 None:intergenic 50.0%
AGCGCAAGCTGCAGCAGAAA+TGG + chr3_3:84323190-84323209 Msa0479360:CDS 55.0%
GCGCAAGCTGCAGCAGAAAT+GGG + chr3_3:84323191-84323210 Msa0479360:CDS 55.0%
GTTCTTTGCAGCACCTGGTG+TGG + chr3_3:84323343-84323362 Msa0479360:CDS 55.0%
!! TGGTGTGGCTAGTCTGGCTT+GGG + chr3_3:84323358-84323377 Msa0479360:CDS 55.0%
! GTGGGTTTTCACGGTTCCCG+TGG + chr3_3:84323055-84323074 Msa0479360:CDS 60.0%
! AGCACCTGGTGTGGCTAGTC+TGG + chr3_3:84323352-84323371 Msa0479360:CDS 60.0%
! CAAGCCAGACTAGCCACACC+AGG - chr3_3:84323359-84323378 None:intergenic 60.0%
!! CTGGTGTGGCTAGTCTGGCT+TGG + chr3_3:84323357-84323376 Msa0479360:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84322564 84325026 84322564 ID=Msa0479360;Name=Msa0479360
chr3_3 mRNA 84322564 84325026 84322564 ID=Msa0479360-mRNA-1;Parent=Msa0479360;Name=Msa0479360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|383
chr3_3 exon 84322564 84323454 84322564 ID=Msa0479360-mRNA-1:exon:23901;Parent=Msa0479360-mRNA-1
chr3_3 exon 84324766 84325026 84324766 ID=Msa0479360-mRNA-1:exon:23902;Parent=Msa0479360-mRNA-1
chr3_3 CDS 84322564 84323454 84322564 ID=Msa0479360-mRNA-1:cds;Parent=Msa0479360-mRNA-1
chr3_3 CDS 84324766 84325026 84324766 ID=Msa0479360-mRNA-1:cds;Parent=Msa0479360-mRNA-1
Gene Sequence

>Msa0479360

ATGGAATGTGCAACCCAAGAAATTTCCAAATCAAACATTGAGCTTGTCATCATAGAAAAAAACATCACGAACCACAATAACCAAAAATCAACCTCGTTAATGGTCAGAAAACGATCCTTAATAAGATCCTTAACAAGTATACTAAAAAAACTTCATGCAGGTTATTTCAGAATTAGCCTCTCATTTGGTGGCCAAGCATTACTATGGAAAACATTAATTGATCCAACAAACGACACAAGCAAATCAAGACACATGCTTAGCATGCTTCCTTCCTCTGTTTTCATAGTACTATGGTCTATGTCTCTTTTTATACTCGCATTACTCTCTCTTCTTTACCTCTTAAGATGTTTATTTTTCTTTAAGATGGTAAAAGAAGAATTCTTACACCATGTAGGAGTTAACTATCTTTTCGCTCCATGGATTTCATGGTTTCTATTACTTCAATCAGCACCATTCATAGCTCCCAAAACCATTACTTATTTAATTCTATGGTGGGTTTTCACGGTTCCCGTGGTTGTTCTCGACGTTAAAATTTACGGTCAGTGGTTTACTAAAGGGAAGAGGTCATTTTTAACGACGGTAGCGAATCCGACAAGTCATTTATCGGTAATAGGGAATTTGGTTGGAGCGCAAGCTGCAGCAGAAATGGGTTGGAAAGAAAGTGCTGTGTGTTTGTTTTCATTAGGGATGGTGCATTATTTGGTGTTGTTTGTGACACTTTATCAAAGGTTGTCTGGTGGTGATCGTCTTCCTGCGTTGTTAAGGCCAGTTTTCTTCTTGTTCTTTGCAGCACCTGGTGTGGCTAGTCTGGCTTGGGAATCTATTGTTGGAGATTTTGATACTCTTTCCAAGATGCTCTTCTTTTTGTCCCTATTCCTCTTCATGTCACTGGTTTGCAGGCCAGCCCTATTCAAGAGATCTATGAGAAGGTTTAATGTTGCATGGTGGGCTTACTCCTTTCCTGTTACCGTACTTGCTATGGCTTCTACAAATTATGCACAACAAGTCAAAGGAACTGTTTCCCATATTCTAATGCTCATTCTCTTGGCACTTTCTGTTCTTGTCTCTGTTTCTCTCACATTGTTCACTTTGCTCAACTCTAAGATGCTTCTACCAGATAACGATCCCATTGCAAGCATCCTCATTGTTTAA

Protein sequence

>Msa0479360

MECATQEISKSNIELVIIEKNITNHNNQKSTSLMVRKRSLIRSLTSILKKLHAGYFRISLSFGGQALLWKTLIDPTNDTSKSRHMLSMLPSSVFIVLWSMSLFILALLSLLYLLRCLFFFKMVKEEFLHHVGVNYLFAPWISWFLLLQSAPFIAPKTITYLILWWVFTVPVVVLDVKIYGQWFTKGKRSFLTTVANPTSHLSVIGNLVGAQAAAEMGWKESAVCLFSLGMVHYLVLFVTLYQRLSGGDRLPALLRPVFFLFFAAPGVASLAWESIVGDFDTLSKMLFFLSLFLFMSLVCRPALFKRSMRRFNVAWWAYSFPVTVLAMASTNYAQQVKGTVSHILMLILLALSVLVSVSLTLFTLLNSKMLLPDNDPIASILIV*