AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473740 MtrunA17_Chr3g0129661 98.837 172 2 0 1 172 1 172 8.37e-125 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473740 AT5G64040.1 70.455 176 43 4 1 172 1 171 1.21e-82 241
Msa0473740 AT5G64040.2 66.667 147 40 4 1 143 1 142 6.41e-58 179

Find 64 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTTGCTCTTGATTCTT+TGG 0.156495 3_3:+76472179 None:intergenic
GAGAAATGCTCTTGCTTTAT+TGG 0.157047 3_3:-76472151 Msa0473740:CDS
GCTGCATCACCAGGGGTTTC+AGG 0.166988 3_3:-76472249 Msa0473740:CDS
GCTCTTGATTCTTTGGCTTC+AGG 0.250361 3_3:+76472186 None:intergenic
ACCATTCATTACAGAAGATT+TGG 0.264682 3_3:-76470324 Msa0473740:CDS
ATTAGGCATGCCTCTCCTTT+TGG 0.321597 3_3:-76470104 Msa0473740:three_prime_UTR
AACTTATTTGTTGCTTTACT+TGG 0.327510 3_3:-76470013 Msa0473740:three_prime_UTR
GTATAACTATATTATGGAAT+TGG 0.338714 3_3:+76469985 None:intergenic
GTGCCCTCTGCTGCATCACC+AGG 0.354143 3_3:-76472258 Msa0473740:CDS
CTTGTTGTATAACTATATTA+TGG 0.362427 3_3:+76469979 None:intergenic
GCCAGCATTGGCAGAAGAAT+TGG 0.362944 3_3:+76472095 None:intergenic
AGAGCATATACAGTGCAATT+TGG 0.365802 3_3:-76470510 Msa0473740:CDS
GCTTGTAGCTATGCCATATC+TGG 0.368961 3_3:-76472309 Msa0473740:CDS
CCTTCTGTTTAGCAAGATCT+TGG 0.372726 3_3:+76470454 None:intergenic
AGATTGCATTGATTTCCTAT+TGG 0.400341 3_3:+76472496 None:intergenic
AGAGAACAAGATTTGCCAAT+AGG 0.418223 3_3:-76472511 None:intergenic
TGGCAACCAGTGAAATTCTC+AGG 0.421964 3_3:+76470474 None:intergenic
TCTTGCAAAGTTTGCTCCAC+TGG 0.422179 3_3:+76470530 None:intergenic
CTGAAACAGCAGTGGTGAAA+AGG 0.440735 3_3:+76472121 None:intergenic
ATTGAGCTCAGCACCAGATA+TGG 0.446987 3_3:+76472296 None:intergenic
TTGTGGTTGGCGTGTGGATA+AGG 0.447550 3_3:+76472471 None:intergenic
TCCAATTCTTCTGCCAATGC+TGG 0.447703 3_3:-76472096 Msa0473740:CDS
ACTTGTTGAGCCTTGATCAA+TGG 0.461753 3_3:+76472216 None:intergenic
TCCAAATCTTCTGTAATGAA+TGG 0.478789 3_3:+76470323 None:intergenic
GATAACTTGAAAGGAGATGT+AGG 0.496797 3_3:-76469920 Msa0473740:three_prime_UTR
AAGTTCCCTGAGAATTTCAC+TGG 0.504808 3_3:-76470480 Msa0473740:CDS
CTTATGTTGCAAGGAACAAA+GGG 0.505444 3_3:+76472436 None:intergenic
TGCCCTCTGCTGCATCACCA+GGG 0.515970 3_3:-76472257 Msa0473740:CDS
GACTCTAGAAGAGTACCAAA+AGG 0.517836 3_3:+76470089 None:intergenic
TGCAAAGTTTGCTCCACTGG+TGG 0.527812 3_3:+76470533 None:intergenic
TTCATCAATAACGCCAGCAT+TGG 0.528232 3_3:+76472083 None:intergenic
GCCCTCTGCTGCATCACCAG+GGG 0.536993 3_3:-76472256 Msa0473740:CDS
TGAAACAGCAGTGGTGAAAA+GGG 0.537677 3_3:+76472122 None:intergenic
GGAACTTGAATGTGAAGGAA+AGG 0.538060 3_3:-76470303 Msa0473740:CDS
ACTTATGTTGCAAGGAACAA+AGG 0.551246 3_3:+76472435 None:intergenic
CATTGCAGCCATGTGTATTG+TGG 0.551968 3_3:+76472347 None:intergenic
AAGAACATTGTTGTGAATCA+CGG 0.553508 3_3:-76469959 Msa0473740:three_prime_UTR
TATCAAGCTACCATTGATCA+AGG 0.554113 3_3:-76472226 Msa0473740:CDS
AGAACATTGTTGTGAATCAC+GGG 0.556350 3_3:-76469958 Msa0473740:three_prime_UTR
TTAAGTCAACTTATGTTGCA+AGG 0.560354 3_3:+76472427 None:intergenic
AATCAAGAGCAAGTGATGGA+AGG 0.560441 3_3:-76472173 Msa0473740:CDS
AACCCCTGGTGATGCAGCAG+AGG 0.560571 3_3:+76472254 None:intergenic
GAGTTCGAAGATAACTTGAA+AGG 0.574788 3_3:-76469929 Msa0473740:three_prime_UTR
AAAGAATCAAGAGCAAGTGA+TGG 0.584476 3_3:-76472177 Msa0473740:CDS
AGCATTGGCAGAAGAATTGG+AGG 0.586473 3_3:+76472098 None:intergenic
AGGAATTGAATGACAAGAAG+AGG 0.586876 3_3:-76470560 Msa0473740:CDS
ACCCCTGGTGATGCAGCAGA+GGG 0.591324 3_3:+76472255 None:intergenic
CCAAGATCTTGCTAAACAGA+AGG 0.606505 3_3:-76470454 Msa0473740:intron
AAGAAGAGGCTAGCCACCAG+TGG 0.614610 3_3:-76470546 Msa0473740:CDS
GTGTAATCAAAGATTGTGGT+TGG 0.615544 3_3:+76472458 None:intergenic
TGAAAAGAGCAAGGCCAACA+AGG 0.620440 3_3:-76472055 Msa0473740:intron
GATTTGGAACTTGAATGTGA+AGG 0.620793 3_3:-76470308 Msa0473740:CDS
GGCAACCAGTGAAATTCTCA+GGG 0.626628 3_3:+76470475 None:intergenic
TAGAAGAGTACCAAAAGGAG+AGG 0.628978 3_3:+76470094 None:intergenic
AAGGGTGTAATCAAAGATTG+TGG 0.631735 3_3:+76472454 None:intergenic
CTAGTAATCCACAATACACA+TGG 0.633671 3_3:-76472355 Msa0473740:exon
CTTCTAGAGTCTTAACTGTG+TGG 0.634201 3_3:-76470077 Msa0473740:three_prime_UTR
CAAAGATTGTGGTTGGCGTG+TGG 0.640195 3_3:+76472465 None:intergenic
TGAATACCTTGAAAAGAGCA+AGG 0.648345 3_3:-76472064 Msa0473740:CDS
ATTTCAAAGAGAACAACACT+AGG 0.650345 3_3:+76470218 None:intergenic
GGAAAGGACAAATACAAGTG+TGG 0.658819 3_3:-76470287 Msa0473740:CDS
TGATGTGTATCAGAGTCCAA+AGG 0.665859 3_3:+76472395 None:intergenic
ATTGGAGGCTGAAACAGCAG+TGG 0.683074 3_3:+76472113 None:intergenic
AGCTTGATACCTGAAACCCC+TGG 0.689347 3_3:+76472240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACATAAATTTTTAAGTTT+GGG + chr3_3:76470755-76470774 None:intergenic 10.0%
!!! AAAACATAAATTTTTAAGTT+TGG + chr3_3:76470756-76470775 None:intergenic 10.0%
!!! AAAATATAAATTTTCAAGTT+CGG - chr3_3:76471194-76471213 Msa0473740:intron 10.0%
!! TAAAAAAAAATATTTACATG+GGG + chr3_3:76471476-76471495 None:intergenic 10.0%
!!! TCAAAACAATTTTTTTTTTA+CGG + chr3_3:76471506-76471525 None:intergenic 10.0%
!! AATCAAAAAAAAATATTTAC+AGG - chr3_3:76471640-76471659 Msa0473740:intron 10.0%
!! ATCAAAAAAAAATATTTACA+GGG - chr3_3:76471641-76471660 Msa0473740:intron 10.0%
!! TAAAAATTAAGAAAATTCAA+GGG + chr3_3:76471713-76471732 None:intergenic 10.0%
!! GTTATAAAAATGTTTAAATT+AGG - chr3_3:76472278-76472297 Msa0473740:CDS 10.0%
!!! AATTTTATTTTATTGTGAAA+TGG + chr3_3:76472366-76472385 None:intergenic 10.0%
!! TTCTTATTATAGGATAAAAT+TGG + chr3_3:76470421-76470440 None:intergenic 15.0%
!!! AACATAAATTTTTAAGTTTG+GGG + chr3_3:76470754-76470773 None:intergenic 15.0%
!! TATTAAAGACAAACAATTAA+CGG - chr3_3:76470799-76470818 Msa0473740:intron 15.0%
!! TTTAAATAAGTCATAAGTTA+TGG - chr3_3:76471034-76471053 Msa0473740:intron 15.0%
!!! AAATATAAATTTTCAAGTTC+GGG - chr3_3:76471195-76471214 Msa0473740:intron 15.0%
!!! AAAACAATTTTTTTTTTACG+GGG + chr3_3:76471504-76471523 None:intergenic 15.0%
!!! CAAAACAATTTTTTTTTTAC+GGG + chr3_3:76471505-76471524 None:intergenic 15.0%
!!! ATCAAAACAAAAAATTTTAC+CGG - chr3_3:76471612-76471631 Msa0473740:intron 15.0%
!! CTAAAAATTAAGAAAATTCA+AGG + chr3_3:76471714-76471733 None:intergenic 15.0%
!! AAAAATATGGTATATTATCA+AGG + chr3_3:76472220-76472239 None:intergenic 15.0%
!!! GACTTAATTTTTATTTCCTT+TGG - chr3_3:76469988-76470007 Msa0473740:three_prime_UTR 20.0%
!!! ATTTAAAAAAAGTACCTTGT+TGG + chr3_3:76470361-76470380 None:intergenic 20.0%
!! AAAAAAATAGCTTCTAACAA+GGG + chr3_3:76470391-76470410 None:intergenic 20.0%
!! AAAAAAAATAGCTTCTAACA+AGG + chr3_3:76470392-76470411 None:intergenic 20.0%
!!! ATAGCAGATTTTCTTATTAT+AGG + chr3_3:76470431-76470450 None:intergenic 20.0%
!! CATCCTTAATCAATTTATTA+TGG - chr3_3:76470541-76470560 Msa0473740:CDS 20.0%
!! ACTCCATAATAAATTGATTA+AGG + chr3_3:76470547-76470566 None:intergenic 20.0%
!! CAATTTATTATGGAGTAAAT+AGG - chr3_3:76470551-76470570 Msa0473740:CDS 20.0%
!!! ACATAAATTTTTAAGTTTGG+GGG + chr3_3:76470753-76470772 None:intergenic 20.0%
!!! TAATTCTGCATTATTTTTAG+AGG + chr3_3:76470861-76470880 None:intergenic 20.0%
!!! TTTGTTTTTGTTATGTCATT+TGG + chr3_3:76471072-76471091 None:intergenic 20.0%
!!! CTTTAATATCTTTTAAGCTA+AGG - chr3_3:76471162-76471181 Msa0473740:intron 20.0%
!!! AATATAAATTTTCAAGTTCG+GGG - chr3_3:76471196-76471215 Msa0473740:intron 20.0%
!! CACAAAATAAATGAGTAAAT+AGG + chr3_3:76471370-76471389 None:intergenic 20.0%
!!! TTACTCATTTATTTTGTGTA+TGG - chr3_3:76471372-76471391 Msa0473740:intron 20.0%
!!! TAGCCTTTTATATTGAATTT+TGG - chr3_3:76471407-76471426 Msa0473740:intron 20.0%
!!! AGCCTTTTATATTGAATTTT+GGG - chr3_3:76471408-76471427 Msa0473740:intron 20.0%
!! AACCCAAAATTCAATATAAA+AGG + chr3_3:76471413-76471432 None:intergenic 20.0%
!!! ATATTGAATTTTGGGTTAAT+AGG - chr3_3:76471416-76471435 Msa0473740:intron 20.0%
!!! AAACAATTTTTTTTTTACGG+GGG + chr3_3:76471503-76471522 None:intergenic 20.0%
!!! AAATAAAATCGGTTTTTGTT+TGG + chr3_3:76471545-76471564 None:intergenic 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG - chr3_3:76471574-76471593 Msa0473740:intron 20.0%
!!! TCAAAACAAAAAATTTTACC+GGG - chr3_3:76471613-76471632 Msa0473740:intron 20.0%
!! CGAACAAATAATATTATCAA+GGG + chr3_3:76471739-76471758 None:intergenic 20.0%
!!! CCTTGATAATATTATTTGTT+CGG - chr3_3:76471737-76471756 Msa0473740:intron 20.0%
!! AAAAATAATAAGATGCACTA+AGG - chr3_3:76471777-76471796 Msa0473740:intron 20.0%
!!! TTATTTTGACTGTATGTATA+TGG - chr3_3:76471813-76471832 Msa0473740:intron 20.0%
!! GAAAAAATAGCATTAGAAAA+TGG + chr3_3:76472034-76472053 None:intergenic 20.0%
!! AACAAAAATGCAGAAAAATA+TGG + chr3_3:76472233-76472252 None:intergenic 20.0%
!! GTATAACTATATTATGGAAT+TGG + chr3_3:76472417-76472436 None:intergenic 20.0%
!!! CTTGTTGTATAACTATATTA+TGG + chr3_3:76472423-76472442 None:intergenic 20.0%
! AAATTGATTAAGGATGTGAT+TGG + chr3_3:76470537-76470556 None:intergenic 25.0%
!! TTGACGAAACTTACAATTTT+GGG + chr3_3:76470585-76470604 None:intergenic 25.0%
!! ATTGACGAAACTTACAATTT+TGG + chr3_3:76471333-76471352 None:intergenic 25.0%
!!! TTGACGTTTTGTTAATTTCA+GGG + chr3_3:76470614-76470633 None:intergenic 25.0%
!!! ATTGACGTTTTGTTAATTTC+AGG + chr3_3:76470615-76470634 None:intergenic 25.0%
! TGACTAACAGAAAAATTTGA+CGG + chr3_3:76470679-76470698 None:intergenic 25.0%
!!! CTTTAATATCTTTTGAGTCA+AGG + chr3_3:76470787-76470806 None:intergenic 25.0%
! ACGGTTATCTTTACTATTTA+AGG - chr3_3:76470818-76470837 Msa0473740:intron 25.0%
! GTTAGAATTAATTGTTCATG+AGG - chr3_3:76470966-76470985 Msa0473740:intron 25.0%
! AATTAATTGTTCATGAGGAA+TGG - chr3_3:76470971-76470990 Msa0473740:intron 25.0%
! ATTAATTGTTCATGAGGAAT+GGG - chr3_3:76470972-76470991 Msa0473740:intron 25.0%
! TGACTCTTTCATTCTTAAAT+GGG + chr3_3:76471108-76471127 None:intergenic 25.0%
! ATGACTCTTTCATTCTTAAA+TGG + chr3_3:76471109-76471128 None:intergenic 25.0%
!!! ATATAAATTTTCAAGTTCGG+GGG - chr3_3:76471197-76471216 Msa0473740:intron 25.0%
! TGACTAACTGAAAAATTTGA+CGG - chr3_3:76471240-76471259 Msa0473740:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr3_3:76471276-76471295 Msa0473740:intron 25.0%
!!! ACGTTTTATTAATTTCAGAG+AGG - chr3_3:76471308-76471327 Msa0473740:intron 25.0%
!! CAAAACAAAAAATTTTACCG+GGG - chr3_3:76471614-76471633 Msa0473740:intron 25.0%
!! AAAACAAAAAATTTTACCGG+GGG - chr3_3:76471615-76471634 Msa0473740:intron 25.0%
!!! ATTTTTTTTTGATTTACCCC+CGG + chr3_3:76471634-76471653 None:intergenic 25.0%
! AATATTTACAGGGAAAAAAC+CGG - chr3_3:76471651-76471670 Msa0473740:intron 25.0%
! AAGAAAATTCAAGGGTTAAT+AGG + chr3_3:76471705-76471724 None:intergenic 25.0%
! CCGAACAAATAATATTATCA+AGG + chr3_3:76471740-76471759 None:intergenic 25.0%
! AGTGAAACAAAAGATGTTTA+TGG + chr3_3:76471982-76472001 None:intergenic 25.0%
! AATGGTAAATAGGAAAACTT+TGG + chr3_3:76472016-76472035 None:intergenic 25.0%
! AGCATTAGAAAATGGTAAAT+AGG + chr3_3:76472026-76472045 None:intergenic 25.0%
! TACTTTCTGCATAAATGAAA+AGG + chr3_3:76472056-76472075 None:intergenic 25.0%
!!! TTCTGCATTTTTGTTGTTAT+TGG - chr3_3:76472238-76472257 Msa0473740:CDS 25.0%
!!! AACTTATTTGTTGCTTTACT+TGG - chr3_3:76472386-76472405 Msa0473740:five_prime_UTR 25.0%
!! AGATTGCATTGATTTCCTAT+TGG + chr3_3:76469906-76469925 None:intergenic 30.0%
TTAAGTCAACTTATGTTGCA+AGG + chr3_3:76469975-76469994 None:intergenic 30.0%
GATAGCAAATCAAGTTATAG+CGG + chr3_3:76470504-76470523 None:intergenic 30.0%
!! GCTATAACTTGATTTGCTAT+CGG - chr3_3:76470503-76470522 Msa0473740:CDS 30.0%
! TGACGAAACTTACAATTTTG+GGG + chr3_3:76470584-76470603 None:intergenic 30.0%
!! TGACGTTTTGTTAATTTCAG+GGG + chr3_3:76470613-76470632 None:intergenic 30.0%
ATTAACGTTGTGCAATTTCA+CGG + chr3_3:76470643-76470662 None:intergenic 30.0%
TAACAGAAAAATTTGACGGA+GGG + chr3_3:76470675-76470694 None:intergenic 30.0%
!!! TATAAATTTTCAAGTTCGGG+GGG - chr3_3:76471198-76471217 Msa0473740:intron 30.0%
TAACTGAAAAATTTGACGGA+GGG - chr3_3:76471244-76471263 Msa0473740:intron 30.0%
GATTAACGTTATGCAATTTC+AGG - chr3_3:76471275-76471294 Msa0473740:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr3_3:76471277-76471296 Msa0473740:intron 30.0%
TGACGAAACTTACAATTTCA+TGG - chr3_3:76471335-76471354 Msa0473740:intron 30.0%
GACGAAACTTACAATTTCAT+GGG - chr3_3:76471336-76471355 Msa0473740:intron 30.0%
ACGAAACTTACAATTTCATG+GGG - chr3_3:76471337-76471356 Msa0473740:intron 30.0%
CGGAAATGACTTATATTACA+GGG + chr3_3:76471448-76471467 None:intergenic 30.0%
CCTGTAATATAAGTCATTTC+CGG - chr3_3:76471446-76471465 Msa0473740:intron 30.0%
AATATTTACATGGGGAAAAC+CGG + chr3_3:76471468-76471487 None:intergenic 30.0%
! GTTTTTACCTCCTGTAATAT+AGG + chr3_3:76471683-76471702 None:intergenic 30.0%
TTGTTCGGAGTATATTTGAA+AGG - chr3_3:76471752-76471771 Msa0473740:intron 30.0%
ACCATTCATTACAGAAGATT+TGG - chr3_3:76472075-76472094 Msa0473740:CDS 30.0%
TCCAAATCTTCTGTAATGAA+TGG + chr3_3:76472079-76472098 None:intergenic 30.0%
!! GTTCTAATGTTTTCTGGAAA+TGG - chr3_3:76472134-76472153 Msa0473740:CDS 30.0%
ATTTCAAAGAGAACAACACT+AGG + chr3_3:76472184-76472203 None:intergenic 30.0%
AAGAACATTGTTGTGAATCA+CGG - chr3_3:76472440-76472459 Msa0473740:five_prime_UTR 30.0%
GTGTAATCAAAGATTGTGGT+TGG + chr3_3:76469944-76469963 None:intergenic 35.0%
! AAGGGTGTAATCAAAGATTG+TGG + chr3_3:76469948-76469967 None:intergenic 35.0%
CTTATGTTGCAAGGAACAAA+GGG + chr3_3:76469966-76469985 None:intergenic 35.0%
ACTTATGTTGCAAGGAACAA+AGG + chr3_3:76469967-76469986 None:intergenic 35.0%
CTAGTAATCCACAATACACA+TGG - chr3_3:76470044-76470063 Msa0473740:three_prime_UTR 35.0%
TATCAAGCTACCATTGATCA+AGG - chr3_3:76470173-76470192 Msa0473740:three_prime_UTR 35.0%
ATCACTTGCTCTTGATTCTT+TGG + chr3_3:76470223-76470242 None:intergenic 35.0%
AAAGAATCAAGAGCAAGTGA+TGG - chr3_3:76470222-76470241 Msa0473740:three_prime_UTR 35.0%
GAGAAATGCTCTTGCTTTAT+TGG - chr3_3:76470248-76470267 Msa0473740:exon 35.0%
TGAATACCTTGAAAAGAGCA+AGG - chr3_3:76470335-76470354 Msa0473740:intron 35.0%
! GACGAAACTTACAATTTTGG+GGG + chr3_3:76470583-76470602 None:intergenic 35.0%
!! GACGTTTTGTTAATTTCAGG+GGG + chr3_3:76470612-76470631 None:intergenic 35.0%
AACAGAAAAATTTGACGGAG+GGG + chr3_3:76470674-76470693 None:intergenic 35.0%
CTAACAGAAAAATTTGACGG+AGG + chr3_3:76470676-76470695 None:intergenic 35.0%
! TGGCTTACTTTGTTGTGAAT+TGG - chr3_3:76471001-76471020 Msa0473740:intron 35.0%
CTAACTGAAAAATTTGACGG+AGG - chr3_3:76471243-76471262 Msa0473740:intron 35.0%
AACTGAAAAATTTGACGGAG+GGG - chr3_3:76471245-76471264 Msa0473740:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr3_3:76471278-76471297 Msa0473740:intron 35.0%
CGAAACTTACAATTTCATGG+GGG - chr3_3:76471338-76471357 Msa0473740:intron 35.0%
CCGGAAATGACTTATATTAC+AGG + chr3_3:76471449-76471468 None:intergenic 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG - chr3_3:76471519-76471538 Msa0473740:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG + chr3_3:76471586-76471605 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG + chr3_3:76471585-76471604 None:intergenic 35.0%
!! GGTTTTTGTTTGGCCTATTA+GGG + chr3_3:76471535-76471554 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG - chr3_3:76471583-76471602 Msa0473740:intron 35.0%
!! CGTTTTTGTTTGGCCTATTA+GGG - chr3_3:76471584-76471603 Msa0473740:intron 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr3_3:76471585-76471604 Msa0473740:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr3_3:76471586-76471605 Msa0473740:intron 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG + chr3_3:76471519-76471538 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG + chr3_3:76471673-76471692 None:intergenic 35.0%
GAAATGACCTATATTACAGG+AGG - chr3_3:76471673-76471692 Msa0473740:intron 35.0%
TGACTGTATGTATATGGTGT+AGG - chr3_3:76471819-76471838 Msa0473740:intron 35.0%
AGGAATTGAATGACAAGAAG+AGG - chr3_3:76471839-76471858 Msa0473740:intron 35.0%
AGAGCATATACAGTGCAATT+TGG - chr3_3:76471889-76471908 Msa0473740:intron 35.0%
! GATTTGGAACTTGAATGTGA+AGG - chr3_3:76472091-76472110 Msa0473740:CDS 35.0%
!!! AGTGTGGTTCTAATGTTTTC+TGG - chr3_3:76472128-76472147 Msa0473740:CDS 35.0%
AGAACATTGTTGTGAATCAC+GGG - chr3_3:76472441-76472460 Msa0473740:five_prime_UTR 35.0%
GAGTTCGAAGATAACTTGAA+AGG - chr3_3:76472470-76472489 Msa0473740:five_prime_UTR 35.0%
GATAACTTGAAAGGAGATGT+AGG - chr3_3:76472479-76472498 Msa0473740:five_prime_UTR 35.0%
TGATGTGTATCAGAGTCCAA+AGG + chr3_3:76470007-76470026 None:intergenic 40.0%
! ACTTGTTGAGCCTTGATCAA+TGG + chr3_3:76470186-76470205 None:intergenic 40.0%
! AATCAAGAGCAAGTGATGGA+AGG - chr3_3:76470226-76470245 Msa0473740:three_prime_UTR 40.0%
TGAAACAGCAGTGGTGAAAA+GGG + chr3_3:76470280-76470299 None:intergenic 40.0%
TTCATCAATAACGCCAGCAT+TGG + chr3_3:76470319-76470338 None:intergenic 40.0%
ACAGAAAAATTTGACGGAGG+GGG + chr3_3:76470673-76470692 None:intergenic 40.0%
ACATAAGTGCAAAACGTCAG+GGG + chr3_3:76470722-76470741 None:intergenic 40.0%
CACATAAGTGCAAAACGTCA+GGG + chr3_3:76470723-76470742 None:intergenic 40.0%
ACTGAAAAATTTGACGGAGG+GGG - chr3_3:76471246-76471265 Msa0473740:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG - chr3_3:76471279-76471298 Msa0473740:intron 40.0%
!! CGGTTTTTGTTTGGCCTATT+AGG + chr3_3:76471536-76471555 None:intergenic 40.0%
CCGGAAATGACCTATATTAC+AGG - chr3_3:76471670-76471689 Msa0473740:intron 40.0%
AAGTTCCCTGAGAATTTCAC+TGG - chr3_3:76471919-76471938 Msa0473740:intron 40.0%
CCTTCTGTTTAGCAAGATCT+TGG + chr3_3:76471948-76471967 None:intergenic 40.0%
CCAAGATCTTGCTAAACAGA+AGG - chr3_3:76471945-76471964 Msa0473740:intron 40.0%
GGAACTTGAATGTGAAGGAA+AGG - chr3_3:76472096-76472115 Msa0473740:CDS 40.0%
GGAAAGGACAAATACAAGTG+TGG - chr3_3:76472112-76472131 Msa0473740:CDS 40.0%
!! TAGAAGAGTACCAAAAGGAG+AGG + chr3_3:76472308-76472327 None:intergenic 40.0%
!! GACTCTAGAAGAGTACCAAA+AGG + chr3_3:76472313-76472332 None:intergenic 40.0%
!! CTTCTAGAGTCTTAACTGTG+TGG - chr3_3:76472322-76472341 Msa0473740:CDS 40.0%
CATTGCAGCCATGTGTATTG+TGG + chr3_3:76470055-76470074 None:intergenic 45.0%
GCTTGTAGCTATGCCATATC+TGG - chr3_3:76470090-76470109 Msa0473740:three_prime_UTR 45.0%
ATTGAGCTCAGCACCAGATA+TGG + chr3_3:76470106-76470125 None:intergenic 45.0%
! GCTCTTGATTCTTTGGCTTC+AGG + chr3_3:76470216-76470235 None:intergenic 45.0%
CTGAAACAGCAGTGGTGAAA+AGG + chr3_3:76470281-76470300 None:intergenic 45.0%
!! AGCATTGGCAGAAGAATTGG+AGG + chr3_3:76470304-76470323 None:intergenic 45.0%
TCCAATTCTTCTGCCAATGC+TGG - chr3_3:76470303-76470322 Msa0473740:CDS 45.0%
!!! TGTTGGCCTTGCTCTTTTCA+AGG + chr3_3:76470344-76470363 None:intergenic 45.0%
TGAAAAGAGCAAGGCCAACA+AGG - chr3_3:76470344-76470363 Msa0473740:intron 45.0%
AACGTTGTGCAATTTCACGG+AGG + chr3_3:76470640-76470659 None:intergenic 45.0%
CATAAGTGCAAAACGTCAGG+GGG + chr3_3:76470721-76470740 None:intergenic 45.0%
GCACATAAGTGCAAAACGTC+AGG + chr3_3:76470724-76470743 None:intergenic 45.0%
! TCTTGCAAAGTTTGCTCCAC+TGG + chr3_3:76471872-76471891 None:intergenic 45.0%
GGCAACCAGTGAAATTCTCA+GGG + chr3_3:76471927-76471946 None:intergenic 45.0%
TGGCAACCAGTGAAATTCTC+AGG + chr3_3:76471928-76471947 None:intergenic 45.0%
! ATTAGGCATGCCTCTCCTTT+TGG - chr3_3:76472295-76472314 Msa0473740:CDS 45.0%
!! ATAAAAAAAAATATTTACAT+GGG + chr3_3:76471477-76471496 None:intergenic 5.0%
!! AATAAAAAAAAATATTTACA+TGG + chr3_3:76471478-76471497 None:intergenic 5.0%
!! TTGAAAAAATAAAATAAAAT+CGG + chr3_3:76471556-76471575 None:intergenic 5.0%
TTGTGGTTGGCGTGTGGATA+AGG + chr3_3:76469931-76469950 None:intergenic 50.0%
CAAAGATTGTGGTTGGCGTG+TGG + chr3_3:76469937-76469956 None:intergenic 50.0%
AGCTTGATACCTGAAACCCC+TGG + chr3_3:76470162-76470181 None:intergenic 50.0%
ATTGGAGGCTGAAACAGCAG+TGG + chr3_3:76470289-76470308 None:intergenic 50.0%
!! GCCAGCATTGGCAGAAGAAT+TGG + chr3_3:76470307-76470326 None:intergenic 50.0%
TCATGAGGAATGGGTGTCTC+TGG - chr3_3:76470981-76471000 Msa0473740:intron 50.0%
! TGCAAAGTTTGCTCCACTGG+TGG + chr3_3:76471869-76471888 None:intergenic 50.0%
! AAGAAGAGGCTAGCCACCAG+TGG - chr3_3:76471853-76471872 Msa0473740:intron 55.0%
TGCCCTCTGCTGCATCACCA+GGG - chr3_3:76470142-76470161 Msa0473740:three_prime_UTR 60.0%
! ACCCCTGGTGATGCAGCAGA+GGG + chr3_3:76470147-76470166 None:intergenic 60.0%
! AACCCCTGGTGATGCAGCAG+AGG + chr3_3:76470148-76470167 None:intergenic 60.0%
GCTGCATCACCAGGGGTTTC+AGG - chr3_3:76470150-76470169 Msa0473740:three_prime_UTR 60.0%
GTGCCCTCTGCTGCATCACC+AGG - chr3_3:76470141-76470160 Msa0473740:three_prime_UTR 65.0%
GCCCTCTGCTGCATCACCAG+GGG - chr3_3:76470143-76470162 Msa0473740:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76469903 76472518 76469903 ID=Msa0473740;Name=Msa0473740
chr3_3 mRNA 76469903 76472518 76469903 ID=Msa0473740-mRNA-1;Parent=Msa0473740;Name=Msa0473740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=160|1|1|1|1|1|3|359|172
chr3_3 exon 76469903 76470351 76469903 ID=Msa0473740-mRNA-1:exon:20028;Parent=Msa0473740-mRNA-1
chr3_3 exon 76470455 76470580 76470455 ID=Msa0473740-mRNA-1:exon:20027;Parent=Msa0473740-mRNA-1
chr3_3 exon 76472056 76472518 76472056 ID=Msa0473740-mRNA-1:exon:20026;Parent=Msa0473740-mRNA-1
chr3_3 five_prime_UTR 76472359 76472518 76472359 ID=Msa0473740-mRNA-1:five_prime_utr;Parent=Msa0473740-mRNA-1
chr3_3 CDS 76472056 76472358 76472056 ID=Msa0473740-mRNA-1:cds;Parent=Msa0473740-mRNA-1
chr3_3 CDS 76470455 76470580 76470455 ID=Msa0473740-mRNA-1:cds;Parent=Msa0473740-mRNA-1
chr3_3 CDS 76470262 76470351 76470262 ID=Msa0473740-mRNA-1:cds;Parent=Msa0473740-mRNA-1
chr3_3 three_prime_UTR 76469903 76470261 76469903 ID=Msa0473740-mRNA-1:three_prime_utr;Parent=Msa0473740-mRNA-1
Gene Sequence

>Msa0473740

ATGGCTGCAATGAACTCAAGTGTATTAGCTTGTAGCTATGCCATATCTGGTGCTGAGCTCAATGCAAAGCTCATTTCAGTGCCCTCTGCTGCATCACCAGGGGTTTCAGGTATCAAGCTACCATTGATCAAGGCTCAACAAGTGAGAATTCCTGAAGCCAAAGAATCAAGAGCAAGTGATGGAAGGAGAAATGCTCTTGCTTTATTGGCTGCTACCCTTTTCACCACTGCTGTTTCAGCCTCCAATTCTTCTGCCAATGCTGGCGTTATTGATGAATACCTTGAAAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGCTAGCCACCAGTGGAGCAAACTTTGCAAGAGCATATACAGTGCAATTTGGTACTTGCAAGTTCCCTGAGAATTTCACTGGTTGCCAAGATCTTGCTAAACAGAAGAAAGTACCATTCATTACAGAAGATTTGGAACTTGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA

Protein sequence

>Msa0473740

MAAMNSSVLACSYAISGAELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESRASDGRRNALALLAATLFTTAVSASNSSANAGVIDEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW*