AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427230 MtrunA17_Chr3g0129661 98.837 172 2 0 1 172 1 172 8.37e-125 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427230 AT5G64040.1 70.455 176 43 4 1 172 1 171 1.21e-82 241
Msa0427230 AT5G64040.2 66.667 147 40 4 1 143 1 142 6.41e-58 179

Find 64 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTTGCTCTTGATTCTT+TGG 0.156495 3_2:+77925475 None:intergenic
GAGAAATGCTCTTGCTTTAT+TGG 0.157047 3_2:-77925447 Msa0427230:CDS
GCTGCATCACCAGGGGTTTC+AGG 0.166988 3_2:-77925545 Msa0427230:CDS
GCTCTTGATTCTTTGGCTTC+AGG 0.250361 3_2:+77925482 None:intergenic
ACCATTCATTACAGAAGATT+TGG 0.264682 3_2:-77923620 Msa0427230:CDS
ATTAGGCATGCCTCTCCTTT+TGG 0.321597 3_2:-77923400 Msa0427230:three_prime_UTR
AACTTATTTGTTGCTTTACT+TGG 0.327510 3_2:-77923309 Msa0427230:three_prime_UTR
GTATAACTATATTATGGAAT+TGG 0.338714 3_2:+77923281 None:intergenic
GTGCCCTCTGCTGCATCACC+AGG 0.354143 3_2:-77925554 Msa0427230:CDS
CTTGTTGTATAACTATATTA+TGG 0.362427 3_2:+77923275 None:intergenic
GCCAGCATTGGCAGAAGAAT+TGG 0.362944 3_2:+77925391 None:intergenic
AGAGCATATACAGTGCAATT+TGG 0.365802 3_2:-77923806 Msa0427230:CDS
GCTTGTAGCTATGCCATATC+TGG 0.368961 3_2:-77925605 Msa0427230:CDS
CCTTCTGTTTAGCAAGATCT+TGG 0.372726 3_2:+77923750 None:intergenic
AGATTGCATTGATTTCCTAT+TGG 0.400341 3_2:+77925792 None:intergenic
AGAGAACAAGATTTGCCAAT+AGG 0.418223 3_2:-77925807 None:intergenic
TGGCAACCAGTGAAATTCTC+AGG 0.421964 3_2:+77923770 None:intergenic
TCTTGCAAAGTTTGCTCCAC+TGG 0.422179 3_2:+77923826 None:intergenic
CTGAAACAGCAGTGGTGAAA+AGG 0.440735 3_2:+77925417 None:intergenic
ATTGAGCTCAGCACCAGATA+TGG 0.446987 3_2:+77925592 None:intergenic
TTGTGGTTGGCGTGTGGATA+AGG 0.447550 3_2:+77925767 None:intergenic
TCCAATTCTTCTGCCAATGC+TGG 0.447703 3_2:-77925392 Msa0427230:CDS
ACTTGTTGAGCCTTGATCAA+TGG 0.461753 3_2:+77925512 None:intergenic
TCCAAATCTTCTGTAATGAA+TGG 0.478789 3_2:+77923619 None:intergenic
GATAACTTGAAAGGAGATGT+AGG 0.496797 3_2:-77923216 Msa0427230:three_prime_UTR
AAGTTCCCTGAGAATTTCAC+TGG 0.504808 3_2:-77923776 Msa0427230:CDS
CTTATGTTGCAAGGAACAAA+GGG 0.505444 3_2:+77925732 None:intergenic
TGCCCTCTGCTGCATCACCA+GGG 0.515970 3_2:-77925553 Msa0427230:CDS
GACTCTAGAAGAGTACCAAA+AGG 0.517836 3_2:+77923385 None:intergenic
TGCAAAGTTTGCTCCACTGG+TGG 0.527812 3_2:+77923829 None:intergenic
TTCATCAATAACGCCAGCAT+TGG 0.528232 3_2:+77925379 None:intergenic
GCCCTCTGCTGCATCACCAG+GGG 0.536993 3_2:-77925552 Msa0427230:CDS
TGAAACAGCAGTGGTGAAAA+GGG 0.537677 3_2:+77925418 None:intergenic
GGAACTTGAATGTGAAGGAA+AGG 0.538060 3_2:-77923599 Msa0427230:CDS
ACTTATGTTGCAAGGAACAA+AGG 0.551246 3_2:+77925731 None:intergenic
CATTGCAGCCATGTGTATTG+TGG 0.551968 3_2:+77925643 None:intergenic
AAGAACATTGTTGTGAATCA+CGG 0.553508 3_2:-77923255 Msa0427230:three_prime_UTR
TATCAAGCTACCATTGATCA+AGG 0.554113 3_2:-77925522 Msa0427230:CDS
AGAACATTGTTGTGAATCAC+GGG 0.556350 3_2:-77923254 Msa0427230:three_prime_UTR
TTAAGTCAACTTATGTTGCA+AGG 0.560354 3_2:+77925723 None:intergenic
AATCAAGAGCAAGTGATGGA+AGG 0.560441 3_2:-77925469 Msa0427230:CDS
CTTCTAGAGTCTTGACTGTG+TGG 0.560442 3_2:-77923373 Msa0427230:three_prime_UTR
AACCCCTGGTGATGCAGCAG+AGG 0.560571 3_2:+77925550 None:intergenic
GAGTTCGAAGATAACTTGAA+AGG 0.574788 3_2:-77923225 Msa0427230:three_prime_UTR
AAAGAATCAAGAGCAAGTGA+TGG 0.584476 3_2:-77925473 Msa0427230:CDS
AGCATTGGCAGAAGAATTGG+AGG 0.586473 3_2:+77925394 None:intergenic
AGGAATTGAATGACAAGAAG+AGG 0.586876 3_2:-77923856 Msa0427230:CDS
ACCCCTGGTGATGCAGCAGA+GGG 0.591324 3_2:+77925551 None:intergenic
CCAAGATCTTGCTAAACAGA+AGG 0.606505 3_2:-77923750 Msa0427230:intron
AAGAAGAGGCTAGCCACCAG+TGG 0.614610 3_2:-77923842 Msa0427230:CDS
GTGTAATCAAAGATTGTGGT+TGG 0.615544 3_2:+77925754 None:intergenic
TGAAAAGAGCAAGGCCAACA+AGG 0.620440 3_2:-77925351 Msa0427230:intron
GATTTGGAACTTGAATGTGA+AGG 0.620793 3_2:-77923604 Msa0427230:CDS
GGCAACCAGTGAAATTCTCA+GGG 0.626628 3_2:+77923771 None:intergenic
TAGAAGAGTACCAAAAGGAG+AGG 0.628978 3_2:+77923390 None:intergenic
AAGGGTGTAATCAAAGATTG+TGG 0.631735 3_2:+77925750 None:intergenic
CTAGTAATCCACAATACACA+TGG 0.633671 3_2:-77925651 Msa0427230:exon
CAAAGATTGTGGTTGGCGTG+TGG 0.640195 3_2:+77925761 None:intergenic
TGAATACCTTGAAAAGAGCA+AGG 0.648345 3_2:-77925360 Msa0427230:CDS
ATTTCAAAGAGAACAACACT+AGG 0.650345 3_2:+77923514 None:intergenic
GGAAAGGACAAATACAAGTG+TGG 0.658819 3_2:-77923583 Msa0427230:CDS
TGATGTGTATCAGAGTCCAA+AGG 0.665859 3_2:+77925691 None:intergenic
ATTGGAGGCTGAAACAGCAG+TGG 0.683074 3_2:+77925409 None:intergenic
AGCTTGATACCTGAAACCCC+TGG 0.689347 3_2:+77925536 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACATAAATTTTTAAGTTT+GGG + chr3_2:77924051-77924070 None:intergenic 10.0%
!!! AAAACATAAATTTTTAAGTT+TGG + chr3_2:77924052-77924071 None:intergenic 10.0%
!!! AAAATATAAATTTTCAAGTT+CGG - chr3_2:77924490-77924509 Msa0427230:intron 10.0%
!! TAAAAAAAAATATTTACATG+GGG + chr3_2:77924772-77924791 None:intergenic 10.0%
!!! TCAAAACAATTTTTTTTTTA+CGG + chr3_2:77924802-77924821 None:intergenic 10.0%
!! AATCAAAAAAAAATATTTAC+AGG - chr3_2:77924936-77924955 Msa0427230:intron 10.0%
!! ATCAAAAAAAAATATTTACA+GGG - chr3_2:77924937-77924956 Msa0427230:intron 10.0%
!! TAAAAATTAAGAAAATTCAA+GGG + chr3_2:77925009-77925028 None:intergenic 10.0%
!! GTTATAAAAATGTTTAAATT+AGG - chr3_2:77925574-77925593 Msa0427230:CDS 10.0%
!!! AATTTTATTTTATTGTGAAA+TGG + chr3_2:77925662-77925681 None:intergenic 10.0%
!! TTCTTATTATAGGATAAAAT+TGG + chr3_2:77923717-77923736 None:intergenic 15.0%
!!! AACATAAATTTTTAAGTTTG+GGG + chr3_2:77924050-77924069 None:intergenic 15.0%
!! TATTAAAGACAAACAATTAA+CGG - chr3_2:77924095-77924114 Msa0427230:intron 15.0%
!! TTTAAATAAGTCATAAGTTA+TGG - chr3_2:77924330-77924349 Msa0427230:intron 15.0%
!!! AAATATAAATTTTCAAGTTC+GGG - chr3_2:77924491-77924510 Msa0427230:intron 15.0%
!!! AAAACAATTTTTTTTTTACG+GGG + chr3_2:77924800-77924819 None:intergenic 15.0%
!!! CAAAACAATTTTTTTTTTAC+GGG + chr3_2:77924801-77924820 None:intergenic 15.0%
!!! ATCAAAACAAAAAATTTTAC+CGG - chr3_2:77924908-77924927 Msa0427230:intron 15.0%
!! TCAAAAAAAAATATTTACAG+GGG - chr3_2:77924938-77924957 Msa0427230:intron 15.0%
!! CTAAAAATTAAGAAAATTCA+AGG + chr3_2:77925010-77925029 None:intergenic 15.0%
!! AAAAATATGGTATATTATCA+AGG + chr3_2:77925516-77925535 None:intergenic 15.0%
!!! GACTTAATTTTTATTTCCTT+TGG - chr3_2:77923284-77923303 Msa0427230:three_prime_UTR 20.0%
!!! ATTTAAAAAAAGTACCTTGT+TGG + chr3_2:77923657-77923676 None:intergenic 20.0%
!! AAAAAAATAGCTTCTAACAA+GGG + chr3_2:77923687-77923706 None:intergenic 20.0%
!! AAAAAAAATAGCTTCTAACA+AGG + chr3_2:77923688-77923707 None:intergenic 20.0%
!!! ATAGCAGATTTTCTTATTAT+AGG + chr3_2:77923727-77923746 None:intergenic 20.0%
!! CATCCTTAATCAATTTATTA+TGG - chr3_2:77923837-77923856 Msa0427230:CDS 20.0%
!! ACTCCATAATAAATTGATTA+AGG + chr3_2:77923843-77923862 None:intergenic 20.0%
!! CAATTTATTATGGAGTAAAT+AGG - chr3_2:77923847-77923866 Msa0427230:CDS 20.0%
!!! ACATAAATTTTTAAGTTTGG+GGG + chr3_2:77924049-77924068 None:intergenic 20.0%
!!! TAATTCTGCATTATTTTTAG+AGG + chr3_2:77924157-77924176 None:intergenic 20.0%
!!! TTTGTTTTTGTTATGTCATT+TGG + chr3_2:77924368-77924387 None:intergenic 20.0%
!!! AATATAAATTTTCAAGTTCG+GGG - chr3_2:77924492-77924511 Msa0427230:intron 20.0%
!! CACAAAATAAATGAGTAAAT+AGG + chr3_2:77924666-77924685 None:intergenic 20.0%
!!! TTACTCATTTATTTTGTGTA+TGG - chr3_2:77924668-77924687 Msa0427230:intron 20.0%
!!! TAGCCTTTTATATTGAATTT+TGG - chr3_2:77924703-77924722 Msa0427230:intron 20.0%
!!! AGCCTTTTATATTGAATTTT+GGG - chr3_2:77924704-77924723 Msa0427230:intron 20.0%
!! AACCCAAAATTCAATATAAA+AGG + chr3_2:77924709-77924728 None:intergenic 20.0%
!!! ATATTGAATTTTGGGTTAAT+AGG - chr3_2:77924712-77924731 Msa0427230:intron 20.0%
!!! AAACAATTTTTTTTTTACGG+GGG + chr3_2:77924799-77924818 None:intergenic 20.0%
!!! AAATAAAATCGGTTTTTGTT+TGG + chr3_2:77924841-77924860 None:intergenic 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG - chr3_2:77924870-77924889 Msa0427230:intron 20.0%
!!! TCAAAACAAAAAATTTTACC+GGG - chr3_2:77924909-77924928 Msa0427230:intron 20.0%
!! CGAACAAATAATATTATCAA+GGG + chr3_2:77925035-77925054 None:intergenic 20.0%
!!! CCTTGATAATATTATTTGTT+CGG - chr3_2:77925033-77925052 Msa0427230:intron 20.0%
!! AAAAATAATAAGATGCACTA+AGG - chr3_2:77925073-77925092 Msa0427230:intron 20.0%
!!! TTATTTTGACTGTATGTATA+TGG - chr3_2:77925109-77925128 Msa0427230:intron 20.0%
!! GAAAAAATAGCATTAGAAAA+TGG + chr3_2:77925330-77925349 None:intergenic 20.0%
!! AACAAAAATGCAGAAAAATA+TGG + chr3_2:77925529-77925548 None:intergenic 20.0%
!! GTATAACTATATTATGGAAT+TGG + chr3_2:77925713-77925732 None:intergenic 20.0%
!!! CTTGTTGTATAACTATATTA+TGG + chr3_2:77925719-77925738 None:intergenic 20.0%
! AAATTGATTAAGGATGTGAT+TGG + chr3_2:77923833-77923852 None:intergenic 25.0%
!! TTGACGAAACTTACAATTTT+GGG + chr3_2:77923881-77923900 None:intergenic 25.0%
!! ATTGACGAAACTTACAATTT+TGG + chr3_2:77924629-77924648 None:intergenic 25.0%
!!! TTGACGTTTTGTTAATTTCA+GGG + chr3_2:77923910-77923929 None:intergenic 25.0%
!!! ATTGACGTTTTGTTAATTTC+AGG + chr3_2:77923911-77923930 None:intergenic 25.0%
! TGACTAACAGAAAAATTTGA+CGG + chr3_2:77923975-77923994 None:intergenic 25.0%
!!! CTTTAATATCTTTTGAGTCA+AGG + chr3_2:77924083-77924102 None:intergenic 25.0%
! ACGGTTATCTTTACTATTTA+AGG - chr3_2:77924114-77924133 Msa0427230:intron 25.0%
! GTTAGAATTAATTGTTCATG+AGG - chr3_2:77924262-77924281 Msa0427230:intron 25.0%
! AATTAATTGTTCATGAGGAA+TGG - chr3_2:77924267-77924286 Msa0427230:intron 25.0%
! ATTAATTGTTCATGAGGAAT+GGG - chr3_2:77924268-77924287 Msa0427230:intron 25.0%
! TGACTCTTTCATTCTTAAAT+GGG + chr3_2:77924404-77924423 None:intergenic 25.0%
! ATGACTCTTTCATTCTTAAA+TGG + chr3_2:77924405-77924424 None:intergenic 25.0%
!! CTTTAATATCTTTTGAGCTA+AGG - chr3_2:77924458-77924477 Msa0427230:intron 25.0%
!!! ATATAAATTTTCAAGTTCGG+GGG - chr3_2:77924493-77924512 Msa0427230:intron 25.0%
! TGACTAACTGAAAAATTTGA+CGG - chr3_2:77924536-77924555 Msa0427230:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr3_2:77924572-77924591 Msa0427230:intron 25.0%
!!! ACGTTTTATTAATTTCAGAG+AGG - chr3_2:77924604-77924623 Msa0427230:intron 25.0%
!! CAAAACAAAAAATTTTACCG+GGG - chr3_2:77924910-77924929 Msa0427230:intron 25.0%
!! AAAACAAAAAATTTTACCGG+GGG - chr3_2:77924911-77924930 Msa0427230:intron 25.0%
!!! ATTTTTTTTTGATTTACCCC+CGG + chr3_2:77924930-77924949 None:intergenic 25.0%
! AAGAAAATTCAAGGGTTAAT+AGG + chr3_2:77925001-77925020 None:intergenic 25.0%
! CCGAACAAATAATATTATCA+AGG + chr3_2:77925036-77925055 None:intergenic 25.0%
! AGTGAAACAAAAGATGTTTA+TGG + chr3_2:77925278-77925297 None:intergenic 25.0%
! AATGGTAAATAGGAAAACTT+TGG + chr3_2:77925312-77925331 None:intergenic 25.0%
! AGCATTAGAAAATGGTAAAT+AGG + chr3_2:77925322-77925341 None:intergenic 25.0%
! TACTTTCTGCATAAATGAAA+AGG + chr3_2:77925352-77925371 None:intergenic 25.0%
!!! TTCTGCATTTTTGTTGTTAT+TGG - chr3_2:77925534-77925553 Msa0427230:CDS 25.0%
!!! AACTTATTTGTTGCTTTACT+TGG - chr3_2:77925682-77925701 Msa0427230:five_prime_UTR 25.0%
!! AGATTGCATTGATTTCCTAT+TGG + chr3_2:77923202-77923221 None:intergenic 30.0%
TTAAGTCAACTTATGTTGCA+AGG + chr3_2:77923271-77923290 None:intergenic 30.0%
GATAGCAAATCAAGTTATAG+CGG + chr3_2:77923800-77923819 None:intergenic 30.0%
!! GCTATAACTTGATTTGCTAT+CGG - chr3_2:77923799-77923818 Msa0427230:CDS 30.0%
! TGACGAAACTTACAATTTTG+GGG + chr3_2:77923880-77923899 None:intergenic 30.0%
!! TGACGTTTTGTTAATTTCAG+GGG + chr3_2:77923909-77923928 None:intergenic 30.0%
ATTAACGTTGTGCAATTTCA+CGG + chr3_2:77923939-77923958 None:intergenic 30.0%
!!! TATAAATTTTCAAGTTCGGG+GGG - chr3_2:77924494-77924513 Msa0427230:intron 30.0%
TAACTGAAAAATTTGACGGA+GGG - chr3_2:77924540-77924559 Msa0427230:intron 30.0%
GATTAACGTTATGCAATTTC+AGG - chr3_2:77924571-77924590 Msa0427230:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr3_2:77924573-77924592 Msa0427230:intron 30.0%
TGACGAAACTTACAATTTCA+TGG - chr3_2:77924631-77924650 Msa0427230:intron 30.0%
GACGAAACTTACAATTTCAT+GGG - chr3_2:77924632-77924651 Msa0427230:intron 30.0%
ACGAAACTTACAATTTCATG+GGG - chr3_2:77924633-77924652 Msa0427230:intron 30.0%
CGGAAATGACTTATATTACA+GGG + chr3_2:77924744-77924763 None:intergenic 30.0%
CCTGTAATATAAGTCATTTC+CGG - chr3_2:77924742-77924761 Msa0427230:intron 30.0%
AATATTTACATGGGGAAAAC+CGG + chr3_2:77924764-77924783 None:intergenic 30.0%
AATATTTACAGGGGAAAAAC+CGG - chr3_2:77924947-77924966 Msa0427230:intron 30.0%
! GTTTTTACCTCCTGTAATAT+AGG + chr3_2:77924979-77924998 None:intergenic 30.0%
TTGTTCGGAGTATATTTGAA+AGG - chr3_2:77925048-77925067 Msa0427230:intron 30.0%
ACCATTCATTACAGAAGATT+TGG - chr3_2:77925371-77925390 Msa0427230:CDS 30.0%
TCCAAATCTTCTGTAATGAA+TGG + chr3_2:77925375-77925394 None:intergenic 30.0%
!! GTTCTAATGTTTTCTGGAAA+TGG - chr3_2:77925430-77925449 Msa0427230:CDS 30.0%
ATTTCAAAGAGAACAACACT+AGG + chr3_2:77925480-77925499 None:intergenic 30.0%
AAGAACATTGTTGTGAATCA+CGG - chr3_2:77925736-77925755 Msa0427230:five_prime_UTR 30.0%
GTGTAATCAAAGATTGTGGT+TGG + chr3_2:77923240-77923259 None:intergenic 35.0%
! AAGGGTGTAATCAAAGATTG+TGG + chr3_2:77923244-77923263 None:intergenic 35.0%
CTTATGTTGCAAGGAACAAA+GGG + chr3_2:77923262-77923281 None:intergenic 35.0%
ACTTATGTTGCAAGGAACAA+AGG + chr3_2:77923263-77923282 None:intergenic 35.0%
CTAGTAATCCACAATACACA+TGG - chr3_2:77923340-77923359 Msa0427230:three_prime_UTR 35.0%
TATCAAGCTACCATTGATCA+AGG - chr3_2:77923469-77923488 Msa0427230:three_prime_UTR 35.0%
ATCACTTGCTCTTGATTCTT+TGG + chr3_2:77923519-77923538 None:intergenic 35.0%
AAAGAATCAAGAGCAAGTGA+TGG - chr3_2:77923518-77923537 Msa0427230:three_prime_UTR 35.0%
GAGAAATGCTCTTGCTTTAT+TGG - chr3_2:77923544-77923563 Msa0427230:exon 35.0%
TGAATACCTTGAAAAGAGCA+AGG - chr3_2:77923631-77923650 Msa0427230:intron 35.0%
! GACGAAACTTACAATTTTGG+GGG + chr3_2:77923879-77923898 None:intergenic 35.0%
!! GACGTTTTGTTAATTTCAGG+GGG + chr3_2:77923908-77923927 None:intergenic 35.0%
ACAGAAAAATTTGACGGAGA+GGG + chr3_2:77923969-77923988 None:intergenic 35.0%
AACAGAAAAATTTGACGGAG+AGG + chr3_2:77923970-77923989 None:intergenic 35.0%
! TGGCTTACTTTGTTGTGAAT+TGG - chr3_2:77924297-77924316 Msa0427230:intron 35.0%
CTAACTGAAAAATTTGACGG+AGG - chr3_2:77924539-77924558 Msa0427230:intron 35.0%
AACTGAAAAATTTGACGGAG+GGG - chr3_2:77924541-77924560 Msa0427230:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr3_2:77924574-77924593 Msa0427230:intron 35.0%
CGAAACTTACAATTTCATGG+GGG - chr3_2:77924634-77924653 Msa0427230:intron 35.0%
CCGGAAATGACTTATATTAC+AGG + chr3_2:77924745-77924764 None:intergenic 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG - chr3_2:77924815-77924834 Msa0427230:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG + chr3_2:77924882-77924901 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG + chr3_2:77924881-77924900 None:intergenic 35.0%
!! GGTTTTTGTTTGGCCTATTA+GGG + chr3_2:77924831-77924850 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG - chr3_2:77924879-77924898 Msa0427230:intron 35.0%
!! CGTTTTTGTTTGGCCTATTA+GGG - chr3_2:77924880-77924899 Msa0427230:intron 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr3_2:77924881-77924900 Msa0427230:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr3_2:77924882-77924901 Msa0427230:intron 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG + chr3_2:77924815-77924834 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG + chr3_2:77924969-77924988 None:intergenic 35.0%
GAAATGACCTATATTACAGG+AGG - chr3_2:77924969-77924988 Msa0427230:intron 35.0%
TGACTGTATGTATATGGTGT+AGG - chr3_2:77925115-77925134 Msa0427230:intron 35.0%
AGGAATTGAATGACAAGAAG+AGG - chr3_2:77925135-77925154 Msa0427230:intron 35.0%
AGAGCATATACAGTGCAATT+TGG - chr3_2:77925185-77925204 Msa0427230:intron 35.0%
! GATTTGGAACTTGAATGTGA+AGG - chr3_2:77925387-77925406 Msa0427230:CDS 35.0%
!!! AGTGTGGTTCTAATGTTTTC+TGG - chr3_2:77925424-77925443 Msa0427230:CDS 35.0%
AGAACATTGTTGTGAATCAC+GGG - chr3_2:77925737-77925756 Msa0427230:five_prime_UTR 35.0%
GAGTTCGAAGATAACTTGAA+AGG - chr3_2:77925766-77925785 Msa0427230:five_prime_UTR 35.0%
GATAACTTGAAAGGAGATGT+AGG - chr3_2:77925775-77925794 Msa0427230:five_prime_UTR 35.0%
TGATGTGTATCAGAGTCCAA+AGG + chr3_2:77923303-77923322 None:intergenic 40.0%
! ACTTGTTGAGCCTTGATCAA+TGG + chr3_2:77923482-77923501 None:intergenic 40.0%
! AATCAAGAGCAAGTGATGGA+AGG - chr3_2:77923522-77923541 Msa0427230:three_prime_UTR 40.0%
TGAAACAGCAGTGGTGAAAA+GGG + chr3_2:77923576-77923595 None:intergenic 40.0%
TTCATCAATAACGCCAGCAT+TGG + chr3_2:77923615-77923634 None:intergenic 40.0%
ACATAAGTGCAAAACGTCAG+GGG + chr3_2:77924018-77924037 None:intergenic 40.0%
CACATAAGTGCAAAACGTCA+GGG + chr3_2:77924019-77924038 None:intergenic 40.0%
ACTGAAAAATTTGACGGAGG+GGG - chr3_2:77924542-77924561 Msa0427230:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG - chr3_2:77924575-77924594 Msa0427230:intron 40.0%
!! CGGTTTTTGTTTGGCCTATT+AGG + chr3_2:77924832-77924851 None:intergenic 40.0%
CCGGAAATGACCTATATTAC+AGG - chr3_2:77924966-77924985 Msa0427230:intron 40.0%
AAGTTCCCTGAGAATTTCAC+TGG - chr3_2:77925215-77925234 Msa0427230:intron 40.0%
CCTTCTGTTTAGCAAGATCT+TGG + chr3_2:77925244-77925263 None:intergenic 40.0%
CCAAGATCTTGCTAAACAGA+AGG - chr3_2:77925241-77925260 Msa0427230:intron 40.0%
GGAACTTGAATGTGAAGGAA+AGG - chr3_2:77925392-77925411 Msa0427230:CDS 40.0%
GGAAAGGACAAATACAAGTG+TGG - chr3_2:77925408-77925427 Msa0427230:CDS 40.0%
!! TAGAAGAGTACCAAAAGGAG+AGG + chr3_2:77925604-77925623 None:intergenic 40.0%
!! GACTCTAGAAGAGTACCAAA+AGG + chr3_2:77925609-77925628 None:intergenic 40.0%
CATTGCAGCCATGTGTATTG+TGG + chr3_2:77923351-77923370 None:intergenic 45.0%
GCTTGTAGCTATGCCATATC+TGG - chr3_2:77923386-77923405 Msa0427230:three_prime_UTR 45.0%
ATTGAGCTCAGCACCAGATA+TGG + chr3_2:77923402-77923421 None:intergenic 45.0%
! GCTCTTGATTCTTTGGCTTC+AGG + chr3_2:77923512-77923531 None:intergenic 45.0%
CTGAAACAGCAGTGGTGAAA+AGG + chr3_2:77923577-77923596 None:intergenic 45.0%
!! AGCATTGGCAGAAGAATTGG+AGG + chr3_2:77923600-77923619 None:intergenic 45.0%
TCCAATTCTTCTGCCAATGC+TGG - chr3_2:77923599-77923618 Msa0427230:CDS 45.0%
!!! TGTTGGCCTTGCTCTTTTCA+AGG + chr3_2:77923640-77923659 None:intergenic 45.0%
TGAAAAGAGCAAGGCCAACA+AGG - chr3_2:77923640-77923659 Msa0427230:intron 45.0%
AACGTTGTGCAATTTCACGG+AGG + chr3_2:77923936-77923955 None:intergenic 45.0%
CATAAGTGCAAAACGTCAGG+GGG + chr3_2:77924017-77924036 None:intergenic 45.0%
GCACATAAGTGCAAAACGTC+AGG + chr3_2:77924020-77924039 None:intergenic 45.0%
! TCTTGCAAAGTTTGCTCCAC+TGG + chr3_2:77925168-77925187 None:intergenic 45.0%
GGCAACCAGTGAAATTCTCA+GGG + chr3_2:77925223-77925242 None:intergenic 45.0%
TGGCAACCAGTGAAATTCTC+AGG + chr3_2:77925224-77925243 None:intergenic 45.0%
! ATTAGGCATGCCTCTCCTTT+TGG - chr3_2:77925591-77925610 Msa0427230:CDS 45.0%
!! CTTCTAGAGTCTTGACTGTG+TGG - chr3_2:77925618-77925637 Msa0427230:CDS 45.0%
!! ATAAAAAAAAATATTTACAT+GGG + chr3_2:77924773-77924792 None:intergenic 5.0%
!! AATAAAAAAAAATATTTACA+TGG + chr3_2:77924774-77924793 None:intergenic 5.0%
!! TTGAAAAAATAAAATAAAAT+CGG + chr3_2:77924852-77924871 None:intergenic 5.0%
TTGTGGTTGGCGTGTGGATA+AGG + chr3_2:77923227-77923246 None:intergenic 50.0%
CAAAGATTGTGGTTGGCGTG+TGG + chr3_2:77923233-77923252 None:intergenic 50.0%
AGCTTGATACCTGAAACCCC+TGG + chr3_2:77923458-77923477 None:intergenic 50.0%
ATTGGAGGCTGAAACAGCAG+TGG + chr3_2:77923585-77923604 None:intergenic 50.0%
!! GCCAGCATTGGCAGAAGAAT+TGG + chr3_2:77923603-77923622 None:intergenic 50.0%
TCATGAGGAATGGGTGTCTC+TGG - chr3_2:77924277-77924296 Msa0427230:intron 50.0%
! TGCAAAGTTTGCTCCACTGG+TGG + chr3_2:77925165-77925184 None:intergenic 50.0%
! AAGAAGAGGCTAGCCACCAG+TGG - chr3_2:77925149-77925168 Msa0427230:intron 55.0%
TGCCCTCTGCTGCATCACCA+GGG - chr3_2:77923438-77923457 Msa0427230:three_prime_UTR 60.0%
! ACCCCTGGTGATGCAGCAGA+GGG + chr3_2:77923443-77923462 None:intergenic 60.0%
! AACCCCTGGTGATGCAGCAG+AGG + chr3_2:77923444-77923463 None:intergenic 60.0%
GCTGCATCACCAGGGGTTTC+AGG - chr3_2:77923446-77923465 Msa0427230:three_prime_UTR 60.0%
GTGCCCTCTGCTGCATCACC+AGG - chr3_2:77923437-77923456 Msa0427230:three_prime_UTR 65.0%
GCCCTCTGCTGCATCACCAG+GGG - chr3_2:77923439-77923458 Msa0427230:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 77923199 77925814 77923199 ID=Msa0427230;Name=Msa0427230
chr3_2 mRNA 77923199 77925814 77923199 ID=Msa0427230-mRNA-1;Parent=Msa0427230;Name=Msa0427230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=160|1|1|1|1|1|3|359|172
chr3_2 exon 77923199 77923647 77923199 ID=Msa0427230-mRNA-1:exon:20428;Parent=Msa0427230-mRNA-1
chr3_2 exon 77923751 77923876 77923751 ID=Msa0427230-mRNA-1:exon:20427;Parent=Msa0427230-mRNA-1
chr3_2 exon 77925352 77925814 77925352 ID=Msa0427230-mRNA-1:exon:20426;Parent=Msa0427230-mRNA-1
chr3_2 five_prime_UTR 77925655 77925814 77925655 ID=Msa0427230-mRNA-1:five_prime_utr;Parent=Msa0427230-mRNA-1
chr3_2 CDS 77925352 77925654 77925352 ID=Msa0427230-mRNA-1:cds;Parent=Msa0427230-mRNA-1
chr3_2 CDS 77923751 77923876 77923751 ID=Msa0427230-mRNA-1:cds;Parent=Msa0427230-mRNA-1
chr3_2 CDS 77923558 77923647 77923558 ID=Msa0427230-mRNA-1:cds;Parent=Msa0427230-mRNA-1
chr3_2 three_prime_UTR 77923199 77923557 77923199 ID=Msa0427230-mRNA-1:three_prime_utr;Parent=Msa0427230-mRNA-1
Gene Sequence

>Msa0427230

ATGGCTGCAATGAACTCAAGTGTATTAGCTTGTAGCTATGCCATATCTGGTGCTGAGCTCAATGCAAAGCTCATTTCAGTGCCCTCTGCTGCATCACCAGGGGTTTCAGGTATCAAGCTACCATTGATCAAGGCTCAACAAGTGAGAATTCCTGAAGCCAAAGAATCAAGAGCAAGTGATGGAAGGAGAAATGCTCTTGCTTTATTGGCTGCTACCCTTTTCACCACTGCTGTTTCAGCCTCCAATTCTTCTGCCAATGCTGGCGTTATTGATGAATACCTTGAAAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGCTAGCCACCAGTGGAGCAAACTTTGCAAGAGCATATACAGTGCAATTTGGTACTTGCAAGTTCCCTGAGAATTTCACTGGTTGCCAAGATCTTGCTAAACAGAAGAAAGTACCATTCATTACAGAAGATTTGGAACTTGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA

Protein sequence

>Msa0427230

MAAMNSSVLACSYAISGAELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESRASDGRRNALALLAATLFTTAVSASNSSANAGVIDEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW*