AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1117770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117770 MtrunA17_Chr7g0255141 99.256 403 3 0 1 403 1 403 0.0 831
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117770 AT3G56940.1 85.366 410 52 4 1 403 1 409 0.0 695
Msa1117770 AT3G56940.2 91.566 332 28 0 72 403 1 332 0.0 641

Find 100 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAGAAACAAGGAGTTTA+AGG 0.171188 7_3:+66217692 Msa1117770:CDS
GCCATTTCTGCTGCCATAAT+TGG 0.175676 7_3:-66217372 None:intergenic
ACATATTTGTCTGAGAAAAT+TGG 0.198268 7_3:+66219485 Msa1117770:CDS
TGTTTCTTAGCTGTTGATTT+TGG 0.214202 7_3:+66220955 Msa1117770:three_prime_UTR
TGTAGCATAGAAAATAAATT+TGG 0.215744 7_3:-66219465 None:intergenic
CTTCAAACTCATCTTCATTA+AGG 0.226003 7_3:-66217626 None:intergenic
TCCAACTTTCGCTTGAACTC+TGG 0.251065 7_3:-66220475 None:intergenic
TATGATGAAACTGTTCTTCT+AGG 0.267498 7_3:-66217441 None:intergenic
GGGTTTATCTGATTTCAATT+TGG 0.291421 7_3:+66219391 Msa1117770:CDS
GTTGTTAAACACAAGTAAAT+TGG 0.291480 7_3:-66220983 None:intergenic
CTAGGAATGTTGCTGAGTTT+TGG 0.306052 7_3:-66217423 None:intergenic
CCTCACTCTTATATTCCTAT+TGG 0.309142 7_3:+66220905 Msa1117770:three_prime_UTR
TTGTTTGAGATGTCTGTATA+TGG 0.316017 7_3:-66219525 None:intergenic
CACCAATAGCAAGAATCTTC+TGG 0.328187 7_3:-66220516 None:intergenic
TGCCCTGGTGTCTGAGCTCT+TGG 0.335522 7_3:+66220591 Msa1117770:CDS
TCCAATTATGGCAGCAGAAA+TGG 0.336647 7_3:+66217371 Msa1117770:exon
GTTTCTACTTGTGGTATGAT+TGG 0.344845 7_3:-66217179 None:intergenic
GTAGGGATCAAAAGGAAATA+AGG 0.350102 7_3:-66220703 None:intergenic
TGTCAAAAGGGTTTCTTTGA+TGG 0.359839 7_3:-66217538 None:intergenic
TGAGTTTGAAGCTTTGCTTC+AGG 0.359858 7_3:+66217638 Msa1117770:CDS
AACCAGAAGATTCTTGCTAT+TGG 0.362875 7_3:+66220514 Msa1117770:CDS
TTAACGTTCAAAGATTTCAT+TGG 0.373482 7_3:+66217232 Msa1117770:five_prime_UTR
CCAACTTTCGCTTGAACTCT+GGG 0.378768 7_3:-66220474 None:intergenic
CAGTAGTGAAGAACTTTAAG+AGG 0.381376 7_3:+66220554 Msa1117770:CDS
TTTCAATTTGGCATTGGACT+TGG 0.383087 7_3:+66219403 Msa1117770:CDS
ACAGATTTCTATGAAGGAAT+TGG 0.383574 7_3:+66220191 Msa1117770:CDS
TGGAGTAGCAGACATTCTTA+TGG 0.384160 7_3:-66217466 None:intergenic
AGATTTCCCCGAGTTTGAAC+GGG 0.384488 7_3:+66220651 Msa1117770:CDS
CTCCATGCCTGTTCTCATCT+TGG 0.390251 7_3:-66219598 None:intergenic
TCTTGTACTGCTGAATTCTC+TGG 0.393467 7_3:+66217774 Msa1117770:CDS
TGTAGAATCTTGGTGTCAAA+AGG 0.394484 7_3:-66217551 None:intergenic
TGTTAATCTCAGTGTTGAAA+AGG 0.401359 7_3:-66217599 None:intergenic
GTAGCATAGAAAATAAATTT+GGG 0.422678 7_3:-66219464 None:intergenic
TTCTCAACATCAAGTACAGC+TGG 0.433804 7_3:-66220451 None:intergenic
TCTACGGATCCTGACTCAAT+TGG 0.440457 7_3:-66220631 None:intergenic
TGTCTGAGAAAATTGGATAC+TGG 0.442138 7_3:+66219492 Msa1117770:CDS
AGAGCTTGGAAGGAGGCTTA+AGG 0.444337 7_3:+66217812 Msa1117770:CDS
GTCTCGCTTCTTCTGTCTAT+CGG 0.446676 7_3:+66219685 Msa1117770:CDS
GGAAAATCCTCGCAGTTGTT+CGG 0.448271 7_3:-66220429 None:intergenic
TTCAATTTGGCATTGGACTT+GGG 0.448463 7_3:+66219404 Msa1117770:CDS
ATCTGATTTCAATTTGGCAT+TGG 0.448946 7_3:+66219397 Msa1117770:CDS
AAATCAGTTGTGTAGAATCT+TGG 0.450494 7_3:-66217561 None:intergenic
TTGTTGTATGTTTCTACTTG+TGG 0.453592 7_3:-66217188 None:intergenic
CAACGCACAGATTTCTATGA+AGG 0.458953 7_3:+66220185 Msa1117770:CDS
GTTGAAGTTGGTGTTGCTGT+TGG 0.460880 7_3:-66217486 None:intergenic
GAAGCTGCTGATAAACTTGA+TGG 0.462581 7_3:+66217714 Msa1117770:CDS
GATTCCACTGATTGCTGCCC+TGG 0.462886 7_3:+66220576 Msa1117770:CDS
ACTGGTGCCAAGATGAGAAC+AGG 0.463603 7_3:+66219591 Msa1117770:CDS
GAGAAAATCTCAGCCACCAC+AGG 0.468845 7_3:-66219170 None:intergenic
TGACATGCATGTCATAATTG+AGG 0.472656 7_3:+66220232 Msa1117770:CDS
TTTCTTCTCTACAAAGAGCT+TGG 0.477727 7_3:+66217798 Msa1117770:CDS
CGCTAGAGAGACCTTCCAAT+AGG 0.479284 7_3:-66220920 None:intergenic
TTCTCTACAAAGAGCTTGGA+AGG 0.481464 7_3:+66217802 Msa1117770:CDS
TCAACAAAGATCTGTCTAAG+AGG 0.485182 7_3:-66217738 None:intergenic
CAGCCAAGAGCTCAGACACC+AGG 0.485992 7_3:-66220594 None:intergenic
ACTTGTGGTATGATTGGTTG+TGG 0.487486 7_3:-66217173 None:intergenic
GTTAATCTCAGTGTTGAAAA+GGG 0.488825 7_3:-66217598 None:intergenic
AGGGATGAAGCTAGGCATGC+AGG 0.489165 7_3:+66219203 Msa1117770:CDS
CTGATGAAACCAATTGAGTC+AGG 0.490154 7_3:+66220622 Msa1117770:CDS
AGCCACAATTTCTCAATGAC+TGG 0.497869 7_3:+66219648 Msa1117770:CDS
ACATTACAGTAGGGATCAAA+AGG 0.504598 7_3:-66220711 None:intergenic
CCCAGAGTTCAAGCGAAAGT+TGG 0.508424 7_3:+66220474 Msa1117770:CDS
TAGATTTCCCCGAGTTTGAA+CGG 0.508881 7_3:+66220650 Msa1117770:CDS
ATGAGTTATTTATCAAGAGA+TGG 0.509659 7_3:+66220876 Msa1117770:three_prime_UTR
TTCAAACTCGGGGAAATCTA+CGG 0.515786 7_3:-66220647 None:intergenic
TTCCAGTCATTGAGAAATTG+TGG 0.534558 7_3:-66219650 None:intergenic
TCTGGTTTATCACCACCATC+CGG 0.544659 7_3:-66220498 None:intergenic
ACTCTTATATTCCTATTGGA+AGG 0.545087 7_3:+66220909 Msa1117770:three_prime_UTR
AACTAATAAGTATCTCATCA+TGG 0.547742 7_3:-66220786 None:intergenic
CAAGCGAAAGTTGGACCGGA+TGG 0.565023 7_3:+66220483 Msa1117770:CDS
GTAGAATCTTGGTGTCAAAA+GGG 0.566760 7_3:-66217550 None:intergenic
CAACAAAGATCTGTCTAAGA+GGG 0.572785 7_3:-66217737 None:intergenic
GGGATGAAGCTAGGCATGCA+GGG 0.572923 7_3:+66219204 Msa1117770:CDS
AATCTCAGCCACCACAGGGT+TGG 0.573147 7_3:-66219165 None:intergenic
AGTTCAAGCGAAAGTTGGAC+CGG 0.578756 7_3:+66220479 Msa1117770:CDS
TCTTTGTTGAATTTCTTGAG+AGG 0.587672 7_3:+66217751 Msa1117770:CDS
CTCAAGATGAACATTACAGT+AGG 0.588589 7_3:-66220721 None:intergenic
AGCCAAGAGCTCAGACACCA+GGG 0.597779 7_3:-66220593 None:intergenic
TGCCAAGATGAGAACAGGCA+TGG 0.599459 7_3:+66219596 Msa1117770:CDS
ACAATTTCTCAATGACTGGA+AGG 0.599992 7_3:+66219652 Msa1117770:CDS
GCGAAAGTTGGACCGGATGG+TGG 0.602636 7_3:+66220486 Msa1117770:CDS
GATTTCCCCGAGTTTGAACG+GGG 0.602852 7_3:+66220652 Msa1117770:CDS
TTGACAATCATTCAGATACA+TGG 0.607400 7_3:-66220165 None:intergenic
TGATGTCTAGGGATGAAGCT+AGG 0.613465 7_3:+66219195 Msa1117770:CDS
ATGGGATAACATTGGTACTG+AGG 0.630813 7_3:-66219551 None:intergenic
GGACTTGGGATTCTTGACAA+AGG 0.631481 7_3:+66219418 Msa1117770:CDS
ATGTTGTTGATGAGAACTTG+TGG 0.632335 7_3:-66217143 None:intergenic
GACACCAGGGCAGCAATCAG+TGG 0.632610 7_3:-66220580 None:intergenic
CCAATAGGAATATAAGAGTG+AGG 0.635602 7_3:-66220905 None:intergenic
TCAAGATGAACATTACAGTA+GGG 0.638985 7_3:-66220720 None:intergenic
TCTCAACATCAAGTACAGCT+GGG 0.645846 7_3:-66220450 None:intergenic
TCTACAAAGAGCTTGGAAGG+AGG 0.650294 7_3:+66217805 Msa1117770:CDS
AGAAAATCTCAGCCACCACA+GGG 0.658199 7_3:-66219169 None:intergenic
GCAGAAAACCAACCCTGTGG+TGG 0.678370 7_3:+66219157 Msa1117770:intron
ACTGCTGTCACGAAACAGTG+TGG 0.700205 7_3:+66220754 Msa1117770:three_prime_UTR
ATGACTGGAAGGCTAAGTTG+TGG 0.703656 7_3:+66219663 Msa1117770:CDS
ATGGCAGAAAACCAACCCTG+TGG 0.748810 7_3:+66219154 Msa1117770:intron
GTTAATTGAAACATGACACG+TGG 0.755014 7_3:-66217214 None:intergenic
AGACAAACCGAACAACTGCG+AGG 0.761394 7_3:+66220422 Msa1117770:intron
ATTTCCCCGAGTTTGAACGG+GGG 0.763129 7_3:+66220653 Msa1117770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATATTAATAATTTC+AGG + chr7_3:66217983-66218002 Msa1117770:intron 10.0%
!! TTGAAATATTAATAATTTCA+GGG + chr7_3:66217984-66218003 Msa1117770:intron 10.0%
!!! GTTTTTATTTTTATTTTTGT+GGG - chr7_3:66218588-66218607 None:intergenic 10.0%
!!! TGTTTTTATTTTTATTTTTG+TGG - chr7_3:66218589-66218608 None:intergenic 10.0%
!!! TCATTTATTTCTATTTTTAT+CGG - chr7_3:66218782-66218801 None:intergenic 10.0%
!!! TTTCATAATTTTATTTAGAT+AGG + chr7_3:66221011-66221030 Msa1117770:three_prime_UTR 10.0%
!!! AAGCTAATAAATTTTGAAAT+AGG + chr7_3:66217923-66217942 Msa1117770:intron 15.0%
!! TTAATCATTTACATATGTTA+AGG + chr7_3:66218674-66218693 Msa1117770:intron 15.0%
!!! ATGAATTTTAGAATTGTTTT+TGG + chr7_3:66218798-66218817 Msa1117770:intron 15.0%
!!! TGAATTTTAGAATTGTTTTT+GGG + chr7_3:66218799-66218818 Msa1117770:intron 15.0%
!! ATTGTAAATTTGCAATTTCA+AGG + chr7_3:66217955-66217974 Msa1117770:intron 20.0%
!! TTGTAAATTTGCAATTTCAA+GGG + chr7_3:66217956-66217975 Msa1117770:intron 20.0%
!!! TTTTTTTGTCTTCTATTCAT+TGG + chr7_3:66219107-66219126 Msa1117770:intron 20.0%
!! AAAAGAATATACGTTAGTTA+CGG + chr7_3:66219303-66219322 Msa1117770:intron 20.0%
!!! TATTCTTTTGATTTATATGC+AGG + chr7_3:66219357-66219376 Msa1117770:intron 20.0%
!! GTAGCATAGAAAATAAATTT+GGG - chr7_3:66219467-66219486 None:intergenic 20.0%
!! TGTAGCATAGAAAATAAATT+TGG - chr7_3:66219468-66219487 None:intergenic 20.0%
!!! TTCTCAAAGTACTTAAAAAT+GGG - chr7_3:66219572-66219591 None:intergenic 20.0%
!! TTTCAACTTAAGAAACTTAA+AGG - chr7_3:66219748-66219767 None:intergenic 20.0%
!!! TTGATAACTATGTTTAAGTA+GGG - chr7_3:66220122-66220141 None:intergenic 20.0%
!!! TTTGATAACTATGTTTAAGT+AGG - chr7_3:66220123-66220142 None:intergenic 20.0%
! TTAACGTTCAAAGATTTCAT+TGG + chr7_3:66217232-66217251 Msa1117770:five_prime_UTR 25.0%
!!! AAAGTTTTTTGCTCCAATTA+TGG + chr7_3:66217359-66217378 Msa1117770:exon 25.0%
!!! TTTGGTGTGAATTTTGAAAT+TGG - chr7_3:66217408-66217427 None:intergenic 25.0%
!! AACTCATTTTGTTAGAAACA+AGG + chr7_3:66217683-66217702 Msa1117770:CDS 25.0%
! AATTATGCTAAATTGAATGC+TGG - chr7_3:66217864-66217883 None:intergenic 25.0%
! AAATCATAGATTTAGCAACT+TGG + chr7_3:66217894-66217913 Msa1117770:intron 25.0%
!!! CAGTTCTTTGAACTTTTTTT+TGG + chr7_3:66218043-66218062 Msa1117770:intron 25.0%
! TGATAAAACCCAACTTAAAT+GGG - chr7_3:66218514-66218533 None:intergenic 25.0%
! ATGATAAAACCCAACTTAAA+TGG - chr7_3:66218515-66218534 None:intergenic 25.0%
!!! ATTTAAGTTGGGTTTTATCA+TGG + chr7_3:66218514-66218533 Msa1117770:intron 25.0%
!!! TTTAAGTTGGGTTTTATCAT+GGG + chr7_3:66218515-66218534 Msa1117770:intron 25.0%
! ACTTTACAATGAGAAGAATT+CGG - chr7_3:66219029-66219048 None:intergenic 25.0%
!! TATATGCAGGTTTTTGAATA+AGG + chr7_3:66219370-66219389 Msa1117770:intron 25.0%
!! ATATGCAGGTTTTTGAATAA+GGG + chr7_3:66219371-66219390 Msa1117770:intron 25.0%
! ACATATTTGTCTGAGAAAAT+TGG + chr7_3:66219485-66219504 Msa1117770:CDS 25.0%
! ACTTAAAAATGGGATAACAT+TGG - chr7_3:66219562-66219581 None:intergenic 25.0%
!! GTTCTCAAAGTACTTAAAAA+TGG - chr7_3:66219573-66219592 None:intergenic 25.0%
!!! TTTTTAAGTACTTTGAGAAC+TGG + chr7_3:66219573-66219592 Msa1117770:CDS 25.0%
! TCTCTGTCAAATTAAAGTAA+TGG + chr7_3:66220283-66220302 Msa1117770:intron 25.0%
! AGTTACTGTTATAAACACTT+AGG + chr7_3:66220313-66220332 Msa1117770:intron 25.0%
! AACTAATAAGTATCTCATCA+TGG - chr7_3:66220789-66220808 None:intergenic 25.0%
! ATGAGTTATTTATCAAGAGA+TGG + chr7_3:66220876-66220895 Msa1117770:three_prime_UTR 25.0%
! GTTGTTAAACACAAGTAAAT+TGG - chr7_3:66220986-66221005 None:intergenic 25.0%
! TTGTTGTATGTTTCTACTTG+TGG - chr7_3:66217191-66217210 None:intergenic 30.0%
TTGGAGCAAAAAACTTTGAT+GGG - chr7_3:66217356-66217375 None:intergenic 30.0%
ATTGGAGCAAAAAACTTTGA+TGG - chr7_3:66217357-66217376 None:intergenic 30.0%
TATGATGAAACTGTTCTTCT+AGG - chr7_3:66217444-66217463 None:intergenic 30.0%
AAATCAGTTGTGTAGAATCT+TGG - chr7_3:66217564-66217583 None:intergenic 30.0%
!! CACAACTGATTTTGATGAAA+TGG + chr7_3:66217572-66217591 Msa1117770:CDS 30.0%
! GTTAATCTCAGTGTTGAAAA+GGG - chr7_3:66217601-66217620 None:intergenic 30.0%
! TGTTAATCTCAGTGTTGAAA+AGG - chr7_3:66217602-66217621 None:intergenic 30.0%
CTTCAAACTCATCTTCATTA+AGG - chr7_3:66217629-66217648 None:intergenic 30.0%
TGTTAGAAACAAGGAGTTTA+AGG + chr7_3:66217692-66217711 Msa1117770:CDS 30.0%
TCTTTGTTGAATTTCTTGAG+AGG + chr7_3:66217751-66217770 Msa1117770:CDS 30.0%
TTTGGTCTGAATAGTATGTT+TGG + chr7_3:66218061-66218080 Msa1117770:intron 30.0%
TTGGTCTGAATAGTATGTTT+GGG + chr7_3:66218062-66218081 Msa1117770:intron 30.0%
! AACTCTAAGTACTAGGATTT+TGG + chr7_3:66218131-66218150 Msa1117770:intron 30.0%
! TTTCAAATGGTAATGAAGTG+TGG + chr7_3:66218381-66218400 Msa1117770:intron 30.0%
GTTGAAGAAGATAGATGATT+GGG + chr7_3:66218466-66218485 Msa1117770:intron 30.0%
! TATAGACAAGTAAAAGCACA+AGG - chr7_3:66219240-66219259 None:intergenic 30.0%
GGGTTTATCTGATTTCAATT+TGG + chr7_3:66219391-66219410 Msa1117770:CDS 30.0%
ATCTGATTTCAATTTGGCAT+TGG + chr7_3:66219397-66219416 Msa1117770:CDS 30.0%
! TTGTTTGAGATGTCTGTATA+TGG - chr7_3:66219528-66219547 None:intergenic 30.0%
CAAGAAAAATGTGATCTCTT+TGG - chr7_3:66220060-66220079 None:intergenic 30.0%
TAATGACCACAAACTCATAA+TGG - chr7_3:66220087-66220106 None:intergenic 30.0%
AGTTATCAAATTTGTGTTGC+AGG + chr7_3:66220133-66220152 Msa1117770:intron 30.0%
TTGACAATCATTCAGATACA+TGG - chr7_3:66220168-66220187 None:intergenic 30.0%
ACAGATTTCTATGAAGGAAT+TGG + chr7_3:66220191-66220210 Msa1117770:CDS 30.0%
! AGTTACTCAAGCTTCATTTT+GGG + chr7_3:66220389-66220408 Msa1117770:intron 30.0%
TCAAGATGAACATTACAGTA+GGG - chr7_3:66220723-66220742 None:intergenic 30.0%
ACTCTTATATTCCTATTGGA+AGG + chr7_3:66220909-66220928 Msa1117770:three_prime_UTR 30.0%
!!! TGTTTCTTAGCTGTTGATTT+TGG + chr7_3:66220955-66220974 Msa1117770:three_prime_UTR 30.0%
! ATGTTGTTGATGAGAACTTG+TGG - chr7_3:66217146-66217165 None:intergenic 35.0%
GTTTCTACTTGTGGTATGAT+TGG - chr7_3:66217182-66217201 None:intergenic 35.0%
GTTAATTGAAACATGACACG+TGG - chr7_3:66217217-66217236 None:intergenic 35.0%
!!! TTGCTTGGTTTTGTTGAAGT+TGG - chr7_3:66217501-66217520 None:intergenic 35.0%
!!! GTTTTGTTTGGTTTCTTGCT+TGG - chr7_3:66217516-66217535 None:intergenic 35.0%
!!! TCTTTGATGGCAGTTTTGTT+TGG - chr7_3:66217528-66217547 None:intergenic 35.0%
TGTCAAAAGGGTTTCTTTGA+TGG - chr7_3:66217541-66217560 None:intergenic 35.0%
!! GTAGAATCTTGGTGTCAAAA+GGG - chr7_3:66217553-66217572 None:intergenic 35.0%
!! TGTAGAATCTTGGTGTCAAA+AGG - chr7_3:66217554-66217573 None:intergenic 35.0%
CAACAAAGATCTGTCTAAGA+GGG - chr7_3:66217740-66217759 None:intergenic 35.0%
TCAACAAAGATCTGTCTAAG+AGG - chr7_3:66217741-66217760 None:intergenic 35.0%
TTTCTTCTCTACAAAGAGCT+TGG + chr7_3:66217798-66217817 Msa1117770:CDS 35.0%
TGATTGCAACTCTAAGTACT+AGG + chr7_3:66218124-66218143 Msa1117770:intron 35.0%
TTCATGGAATCATGGTACTT+CGG - chr7_3:66218304-66218323 None:intergenic 35.0%
! CGCTTGAAATCGATTTCAAA+TGG + chr7_3:66218368-66218387 Msa1117770:intron 35.0%
GGTTGAAGAAGATAGATGAT+TGG + chr7_3:66218465-66218484 Msa1117770:intron 35.0%
AAAACCCAACTTAAATGGGT+CGG - chr7_3:66218510-66218529 None:intergenic 35.0%
GAAACTGTTCAACCATCAAA+TGG + chr7_3:66218555-66218574 Msa1117770:intron 35.0%
! GGAAATGAGCAATAGTTTGT+TGG + chr7_3:66218820-66218839 Msa1117770:intron 35.0%
! TCATTGGCTGATATATTGCA+TGG + chr7_3:66219123-66219142 Msa1117770:intron 35.0%
! CATTGGCTGATATATTGCAT+GGG + chr7_3:66219124-66219143 Msa1117770:intron 35.0%
ATATTGCATGGGATTCGAAA+TGG + chr7_3:66219135-66219154 Msa1117770:intron 35.0%
! AGATTTTCTCTCTGATGTCT+AGG + chr7_3:66219183-66219202 Msa1117770:CDS 35.0%
! GATTTTCTCTCTGATGTCTA+GGG + chr7_3:66219184-66219203 Msa1117770:CDS 35.0%
! TTTCAATTTGGCATTGGACT+TGG + chr7_3:66219403-66219422 Msa1117770:CDS 35.0%
! TTCAATTTGGCATTGGACTT+GGG + chr7_3:66219404-66219423 Msa1117770:CDS 35.0%
TGTCTGAGAAAATTGGATAC+TGG + chr7_3:66219492-66219511 Msa1117770:CDS 35.0%
TTCCAGTCATTGAGAAATTG+TGG - chr7_3:66219653-66219672 None:intergenic 35.0%
ACAATTTCTCAATGACTGGA+AGG + chr7_3:66219652-66219671 Msa1117770:CDS 35.0%
GTAAATCTGATTCTGCATGT+TGG - chr7_3:66220014-66220033 None:intergenic 35.0%
ATGCAGAATCAGATTTACCT+TGG + chr7_3:66220016-66220035 Msa1117770:intron 35.0%
AAAAATGTGATCTCTTTGGC+TGG - chr7_3:66220056-66220075 None:intergenic 35.0%
TGTCTTCCATTATGAGTTTG+TGG + chr7_3:66220078-66220097 Msa1117770:intron 35.0%
TGACATGCATGTCATAATTG+AGG + chr7_3:66220232-66220251 Msa1117770:CDS 35.0%
! CAGTTACTCAAGCTTCATTT+TGG + chr7_3:66220388-66220407 Msa1117770:intron 35.0%
! AACCAGAAGATTCTTGCTAT+TGG + chr7_3:66220514-66220533 Msa1117770:CDS 35.0%
CAGTAGTGAAGAACTTTAAG+AGG + chr7_3:66220554-66220573 Msa1117770:CDS 35.0%
GTAGGGATCAAAAGGAAATA+AGG - chr7_3:66220706-66220725 None:intergenic 35.0%
ACATTACAGTAGGGATCAAA+AGG - chr7_3:66220714-66220733 None:intergenic 35.0%
CTCAAGATGAACATTACAGT+AGG - chr7_3:66220724-66220743 None:intergenic 35.0%
CCAATAGGAATATAAGAGTG+AGG - chr7_3:66220908-66220927 None:intergenic 35.0%
CCTCACTCTTATATTCCTAT+TGG + chr7_3:66220905-66220924 Msa1117770:three_prime_UTR 35.0%
! TGGCTTTCTTTTGCTCTCAT+TGG - chr7_3:66217126-66217145 None:intergenic 40.0%
! ACTTGTGGTATGATTGGTTG+TGG - chr7_3:66217176-66217195 None:intergenic 40.0%
TCCAATTATGGCAGCAGAAA+TGG + chr7_3:66217371-66217390 Msa1117770:exon 40.0%
! CTAGGAATGTTGCTGAGTTT+TGG - chr7_3:66217426-66217445 None:intergenic 40.0%
TGGAGTAGCAGACATTCTTA+TGG - chr7_3:66217469-66217488 None:intergenic 40.0%
! TGAGTTTGAAGCTTTGCTTC+AGG + chr7_3:66217638-66217657 Msa1117770:CDS 40.0%
GAAGCTGCTGATAAACTTGA+TGG + chr7_3:66217714-66217733 Msa1117770:CDS 40.0%
TCTTGTACTGCTGAATTCTC+TGG + chr7_3:66217774-66217793 Msa1117770:CDS 40.0%
TTCTCTACAAAGAGCTTGGA+AGG + chr7_3:66217802-66217821 Msa1117770:CDS 40.0%
TACGCAAAAGAACCGCAAAT+CGG - chr7_3:66218237-66218256 None:intergenic 40.0%
!!! TCTTTTGCGTATTGATTCGC+CGG + chr7_3:66218246-66218265 Msa1117770:intron 40.0%
CAAATGCGTTCATGGAATCA+TGG - chr7_3:66218312-66218331 None:intergenic 40.0%
! TCATCTTTCCAGTTTTCCTG+CGG + chr7_3:66218420-66218439 Msa1117770:intron 40.0%
AAACCCAACTTAAATGGGTC+GGG - chr7_3:66218509-66218528 None:intergenic 40.0%
GTGGGTCAAATTCCATTTGA+TGG - chr7_3:66218570-66218589 None:intergenic 40.0%
AGAAGAATTCGGTACGTATG+GGG - chr7_3:66219018-66219037 None:intergenic 40.0%
GAGAAGAATTCGGTACGTAT+GGG - chr7_3:66219019-66219038 None:intergenic 40.0%
TGAGAAGAATTCGGTACGTA+TGG - chr7_3:66219020-66219039 None:intergenic 40.0%
ATTGAGAATCATGCAACGCA+TGG + chr7_3:66219268-66219287 Msa1117770:intron 40.0%
TTGAGAATCATGCAACGCAT+GGG + chr7_3:66219269-66219288 Msa1117770:intron 40.0%
ATGGGATAACATTGGTACTG+AGG - chr7_3:66219554-66219573 None:intergenic 40.0%
AGCCACAATTTCTCAATGAC+TGG + chr7_3:66219648-66219667 Msa1117770:CDS 40.0%
GTATGTAACTCAGCACCAAT+CGG - chr7_3:66219786-66219805 None:intergenic 40.0%
ACCTTAACTGAGAATGCACA+TGG + chr7_3:66219816-66219835 Msa1117770:intron 40.0%
TCCATGTGCATTCTCAGTTA+AGG - chr7_3:66219820-66219839 None:intergenic 40.0%
CTATGTAGCACCAACACTTA+AGG + chr7_3:66219847-66219866 Msa1117770:intron 40.0%
ATGCCTTCAACCTTAAGTGT+TGG - chr7_3:66219860-66219879 None:intergenic 40.0%
TTGAATCTAACCACACGTGT+CGG - chr7_3:66219909-66219928 None:intergenic 40.0%
CAACGCACAGATTTCTATGA+AGG + chr7_3:66220185-66220204 Msa1117770:CDS 40.0%
TCTCAACATCAAGTACAGCT+GGG - chr7_3:66220453-66220472 None:intergenic 40.0%
TTCTCAACATCAAGTACAGC+TGG - chr7_3:66220454-66220473 None:intergenic 40.0%
CACCAATAGCAAGAATCTTC+TGG - chr7_3:66220519-66220538 None:intergenic 40.0%
CTGATGAAACCAATTGAGTC+AGG + chr7_3:66220622-66220641 Msa1117770:CDS 40.0%
TTCAAACTCGGGGAAATCTA+CGG - chr7_3:66220650-66220669 None:intergenic 40.0%
TAGATTTCCCCGAGTTTGAA+CGG + chr7_3:66220650-66220669 Msa1117770:CDS 40.0%
GCCATTTCTGCTGCCATAAT+TGG - chr7_3:66217375-66217394 None:intergenic 45.0%
!! GTTGAAGTTGGTGTTGCTGT+TGG - chr7_3:66217489-66217508 None:intergenic 45.0%
TCTACAAAGAGCTTGGAAGG+AGG + chr7_3:66217805-66217824 Msa1117770:CDS 45.0%
TTGGAAGGAGGCTTAAGGTT+TGG + chr7_3:66217817-66217836 Msa1117770:intron 45.0%
CAATTCGCGGTTCTCTAATG+GGG - chr7_3:66218203-66218222 None:intergenic 45.0%
CCAATTCGCGGTTCTCTAAT+GGG - chr7_3:66218204-66218223 None:intergenic 45.0%
ACCAATTCGCGGTTCTCTAA+TGG - chr7_3:66218205-66218224 None:intergenic 45.0%
ATGGTGCTCAAATGCGTTCA+TGG - chr7_3:66218320-66218339 None:intergenic 45.0%
GAGCTTAAAGCTTGCGTTCA+TGG - chr7_3:66218339-66218358 None:intergenic 45.0%
GAAGAATTCGGTACGTATGG+GGG - chr7_3:66219017-66219036 None:intergenic 45.0%
AGAAAATCTCAGCCACCACA+GGG - chr7_3:66219172-66219191 None:intergenic 45.0%
TGATGTCTAGGGATGAAGCT+AGG + chr7_3:66219195-66219214 Msa1117770:CDS 45.0%
TGAGAATCATGCAACGCATG+GGG + chr7_3:66219270-66219289 Msa1117770:intron 45.0%
GGACTTGGGATTCTTGACAA+AGG + chr7_3:66219418-66219437 Msa1117770:CDS 45.0%
ATGACTGGAAGGCTAAGTTG+TGG + chr7_3:66219663-66219682 Msa1117770:CDS 45.0%
GTCTCGCTTCTTCTGTCTAT+CGG + chr7_3:66219685-66219704 Msa1117770:CDS 45.0%
CCAATCGGAACTAGCTATTG+AGG - chr7_3:66219771-66219790 None:intergenic 45.0%
CCTCAATAGCTAGTTCCGAT+TGG + chr7_3:66219768-66219787 Msa1117770:intron 45.0%
GCACCAACACTTAAGGTTGA+AGG + chr7_3:66219854-66219873 Msa1117770:intron 45.0%
TACTTGTTCCGTGTCTGTGT+TGG + chr7_3:66219952-66219971 Msa1117770:intron 45.0%
ACAACCAACCAACACAGACA+CGG - chr7_3:66219963-66219982 None:intergenic 45.0%
!! TCTGTGTTGGTTGGTTGTGT+CGG + chr7_3:66219965-66219984 Msa1117770:intron 45.0%
TGGCATACTAAGGAATGCCA+AGG - chr7_3:66220036-66220055 None:intergenic 45.0%
TCTCTTTGGCTGGCATACTA+AGG - chr7_3:66220046-66220065 None:intergenic 45.0%
GGAAAATCCTCGCAGTTGTT+CGG - chr7_3:66220432-66220451 None:intergenic 45.0%
CCAACTTTCGCTTGAACTCT+GGG - chr7_3:66220477-66220496 None:intergenic 45.0%
TCCAACTTTCGCTTGAACTC+TGG - chr7_3:66220478-66220497 None:intergenic 45.0%
AGTTCAAGCGAAAGTTGGAC+CGG + chr7_3:66220479-66220498 Msa1117770:CDS 45.0%
! TCTGGTTTATCACCACCATC+CGG - chr7_3:66220501-66220520 None:intergenic 45.0%
TCTACGGATCCTGACTCAAT+TGG - chr7_3:66220634-66220653 None:intergenic 45.0%
AGATTTCCCCGAGTTTGAAC+GGG + chr7_3:66220651-66220670 Msa1117770:CDS 45.0%
AGAGCTTGGAAGGAGGCTTA+AGG + chr7_3:66217812-66217831 Msa1117770:CDS 50.0%
CCCATTAGAGAACCGCGAAT+TGG + chr7_3:66218201-66218220 Msa1117770:intron 50.0%
! TCTTTCCAGTTTTCCTGCGG+CGG + chr7_3:66218423-66218442 Msa1117770:intron 50.0%
! GGCTGCACTTCTGTTTTGCT+AGG + chr7_3:66218444-66218463 Msa1117770:intron 50.0%
TGGGTCGGGTGCAAACATAT+GGG - chr7_3:66218495-66218514 None:intergenic 50.0%
ATGGGTCGGGTGCAAACATA+TGG - chr7_3:66218496-66218515 None:intergenic 50.0%
TGCACCCGACCCATTTAAGT+TGG + chr7_3:66218502-66218521 Msa1117770:intron 50.0%
! GCACCCGACCCATTTAAGTT+GGG + chr7_3:66218503-66218522 Msa1117770:intron 50.0%
TATAGAGCTTCGGTACGCGT+CGG - chr7_3:66218994-66219013 None:intergenic 50.0%
! CGTATGGGGGTATAGAGCTT+CGG - chr7_3:66219004-66219023 None:intergenic 50.0%
ATGGCAGAAAACCAACCCTG+TGG + chr7_3:66219154-66219173 Msa1117770:intron 50.0%
GAGAAAATCTCAGCCACCAC+AGG - chr7_3:66219173-66219192 None:intergenic 50.0%
! ACTGGTGCCAAGATGAGAAC+AGG + chr7_3:66219591-66219610 Msa1117770:CDS 50.0%
TGCCAAGATGAGAACAGGCA+TGG + chr7_3:66219596-66219615 Msa1117770:CDS 50.0%
CTCCATGCCTGTTCTCATCT+TGG - chr7_3:66219601-66219620 None:intergenic 50.0%
! TGTTCCGTGTCTGTGTTGGT+TGG + chr7_3:66219956-66219975 Msa1117770:intron 50.0%
AGACAAACCGAACAACTGCG+AGG + chr7_3:66220422-66220441 Msa1117770:intron 50.0%
CCCAGAGTTCAAGCGAAAGT+TGG + chr7_3:66220474-66220493 Msa1117770:CDS 50.0%
GATTTCCCCGAGTTTGAACG+GGG + chr7_3:66220652-66220671 Msa1117770:CDS 50.0%
ATTTCCCCGAGTTTGAACGG+GGG + chr7_3:66220653-66220672 Msa1117770:CDS 50.0%
ACTGCTGTCACGAAACAGTG+TGG + chr7_3:66220754-66220773 Msa1117770:three_prime_UTR 50.0%
CGCTAGAGAGACCTTCCAAT+AGG - chr7_3:66220923-66220942 None:intergenic 50.0%
TGATTCGCCGGAATTCGTGC+CGG + chr7_3:66218258-66218277 Msa1117770:intron 55.0%
GCGAATTCCGGCACGAATTC+CGG - chr7_3:66218268-66218287 None:intergenic 55.0%
TCGCTGAGTTGCGCGAATTC+CGG - chr7_3:66218280-66218299 None:intergenic 55.0%
GTCGGGTGCAAACATATGGG+CGG - chr7_3:66218492-66218511 None:intergenic 55.0%
GCAGAAAACCAACCCTGTGG+TGG + chr7_3:66219157-66219176 Msa1117770:intron 55.0%
AATCTCAGCCACCACAGGGT+TGG - chr7_3:66219168-66219187 None:intergenic 55.0%
AGGGATGAAGCTAGGCATGC+AGG + chr7_3:66219203-66219222 Msa1117770:CDS 55.0%
GGGATGAAGCTAGGCATGCA+GGG + chr7_3:66219204-66219223 Msa1117770:CDS 55.0%
GAAGCTAGGCATGCAGGGTA+AGG + chr7_3:66219209-66219228 Msa1117770:intron 55.0%
CTATACGACACCGACACGTG+TGG + chr7_3:66219896-66219915 Msa1117770:intron 55.0%
CAAGCGAAAGTTGGACCGGA+TGG + chr7_3:66220483-66220502 Msa1117770:CDS 55.0%
! GATTCCACTGATTGCTGCCC+TGG + chr7_3:66220576-66220595 Msa1117770:CDS 55.0%
AGCCAAGAGCTCAGACACCA+GGG - chr7_3:66220596-66220615 None:intergenic 55.0%
ACAAGCCCCCGTTCAAACTC+GGG - chr7_3:66220661-66220680 None:intergenic 55.0%
CACAAGCCCCCGTTCAAACT+CGG - chr7_3:66220662-66220681 None:intergenic 55.0%
GGTACGCGCGAACCAATTCG+CGG - chr7_3:66218216-66218235 None:intergenic 60.0%
!! GGTTCGCGCGTACCGATTTG+CGG + chr7_3:66218222-66218241 Msa1117770:intron 60.0%
GCGAAAGTTGGACCGGATGG+TGG + chr7_3:66220486-66220505 Msa1117770:CDS 60.0%
GACACCAGGGCAGCAATCAG+TGG - chr7_3:66220583-66220602 None:intergenic 60.0%
TGCCCTGGTGTCTGAGCTCT+TGG + chr7_3:66220591-66220610 Msa1117770:CDS 60.0%
CAGCCAAGAGCTCAGACACC+AGG - chr7_3:66220597-66220616 None:intergenic 60.0%
CAAGCCCCCGTTCAAACTCG+GGG - chr7_3:66220660-66220679 None:intergenic 60.0%
TGCAGCCGCCGCAGGAAAAC+TGG - chr7_3:66218431-66218450 None:intergenic 65.0%
! AACAGAAGTGCAGCCGCCGC+AGG - chr7_3:66218439-66218458 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 66217102 66221046 66217102 ID=Msa1117770;Name=Msa1117770
chr7_3 mRNA 66217102 66221046 66217102 ID=Msa1117770-mRNA-1;Parent=Msa1117770;Name=Msa1117770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=276|1|1|1|1|1|5|359|403
chr7_3 exon 66217102 66217833 66217102 ID=Msa1117770-mRNA-1:exon:15986;Parent=Msa1117770-mRNA-1
chr7_3 exon 66219161 66219225 66219161 ID=Msa1117770-mRNA-1:exon:15987;Parent=Msa1117770-mRNA-1
chr7_3 exon 66219379 66219706 66219379 ID=Msa1117770-mRNA-1:exon:15988;Parent=Msa1117770-mRNA-1
chr7_3 exon 66220155 66220253 66220155 ID=Msa1117770-mRNA-1:exon:15989;Parent=Msa1117770-mRNA-1
chr7_3 exon 66220424 66221046 66220424 ID=Msa1117770-mRNA-1:exon:15990;Parent=Msa1117770-mRNA-1
chr7_3 five_prime_UTR 66217102 66217377 66217102 ID=Msa1117770-mRNA-1:five_prime_utr;Parent=Msa1117770-mRNA-1
chr7_3 CDS 66217378 66217833 66217378 ID=Msa1117770-mRNA-1:cds;Parent=Msa1117770-mRNA-1
chr7_3 CDS 66219161 66219225 66219161 ID=Msa1117770-mRNA-1:cds;Parent=Msa1117770-mRNA-1
chr7_3 CDS 66219379 66219706 66219379 ID=Msa1117770-mRNA-1:cds;Parent=Msa1117770-mRNA-1
chr7_3 CDS 66220155 66220253 66220155 ID=Msa1117770-mRNA-1:cds;Parent=Msa1117770-mRNA-1
chr7_3 CDS 66220424 66220687 66220424 ID=Msa1117770-mRNA-1:cds;Parent=Msa1117770-mRNA-1
chr7_3 three_prime_UTR 66220688 66221046 66220688 ID=Msa1117770-mRNA-1:three_prime_utr;Parent=Msa1117770-mRNA-1
Gene Sequence

>Msa1117770

ATGGCAGCAGAAATGGCTCTTGTGAAACCAATTTCAAAATTCACACCAAAACTCAGCAACATTCCTAGAAGAACAGTTTCATCATATTCCATAAGAATGTCTGCTACTCCAACAGCAACACCAACTTCAACAAAACCAAGCAAGAAACCAAACAAAACTGCCATCAAAGAAACCCTTTTGACACCAAGATTCTACACAACTGATTTTGATGAAATGGAGACCCTTTTCAACACTGAGATTAACAAGAACCTTAATGAAGATGAGTTTGAAGCTTTGCTTCAGGAATTCAAAACTGATTACAATCAAACTCATTTTGTTAGAAACAAGGAGTTTAAGGAAGCTGCTGATAAACTTGATGGCCCTCTTAGACAGATCTTTGTTGAATTTCTTGAGAGGTCTTGTACTGCTGAATTCTCTGGTTTTCTTCTCTACAAAGAGCTTGGAAGGAGGCTTAAGAAAACCAACCCTGTGGTGGCTGAGATTTTCTCTCTGATGTCTAGGGATGAAGCTAGGCATGCAGGGTTTTTGAATAAGGGTTTATCTGATTTCAATTTGGCATTGGACTTGGGATTCTTGACAAAGGCTAGAAAGTACACATTTTTCAAGCCCAAATTTATTTTCTATGCTACATATTTGTCTGAGAAAATTGGATACTGGAGATACATAACCATATACAGACATCTCAAACAAAATCCTCAGTACCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAAGATGAGAACAGGCATGGAGATTTCTTCTCTGCTTTGATGAAAGCACAGCCACAATTTCTCAATGACTGGAAGGCTAAGTTGTGGTCTCGCTTCTTCTGTCTATCGGTTTATGTCACCATGTATCTGAATGATTGTCAACGCACAGATTTCTATGAAGGAATTGGACTTAACACAAAAGAGTTTGACATGCATGTCATAATTGAGACAAACCGAACAACTGCGAGGATTTTCCCAGCTGTACTTGATGTTGAGAACCCAGAGTTCAAGCGAAAGTTGGACCGGATGGTGGTGATAAACCAGAAGATTCTTGCTATTGGTGAGAGTGATGACAATTCAGTAGTGAAGAACTTTAAGAGGATTCCACTGATTGCTGCCCTGGTGTCTGAGCTCTTGGCTGCGTATCTGATGAAACCAATTGAGTCAGGATCCGTAGATTTCCCCGAGTTTGAACGGGGGCTTGTGTACTAA

Protein sequence

>Msa1117770

MAAEMALVKPISKFTPKLSNIPRRTVSSYSIRMSATPTATPTSTKPSKKPNKTAIKETLLTPRFYTTDFDEMETLFNTEINKNLNEDEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKQNPQYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKILAIGESDDNSVVKNFKRIPLIAALVSELLAAYLMKPIESGSVDFPEFERGLVY*