AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1308430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308430 MtrunA17_Chr8g0335111 98.276 232 4 0 1 232 1 232 1.25e-168 464
Msa1308430 MtrunA17_Chr3g0109401 29.524 105 74 0 127 231 73 177 2.14e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308430 AT4G05180.2 69.362 235 64 4 1 232 1 230 1.04e-110 317
Msa1308430 AT4G05180.1 69.362 235 64 4 1 232 1 230 1.04e-110 317
Msa1308430 AT4G21280.1 69.737 228 64 3 5 232 1 223 1.94e-105 304
Msa1308430 AT4G21280.2 69.432 229 64 4 5 232 1 224 1.27e-103 299
Msa1308430 AT3G01440.1 25.989 177 119 4 61 231 49 219 8.66e-11 60.1

Find 67 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATATGGCCAAGCTTTC+TGG 0.130603 8_4:+4714915 None:intergenic
TCACTTTATGCAATTCTTAA+TGG 0.159194 8_4:-4714060 Msa1308430:three_prime_UTR
AATGATGTTCTTAGCAAAAT+TGG 0.209646 8_4:-4714215 Msa1308430:CDS
GGTGGCCCTCCTCCACCTTC+TGG 0.276244 8_4:-4715870 Msa1308430:CDS
TCTTGTGTAAGCTTTGTCTA+TGG 0.296268 8_4:-4714169 Msa1308430:three_prime_UTR
GATATCCTGGAAGAGCTTTC+CGG 0.325246 8_4:+4714793 None:intergenic
AGGAGGGCCACCAACTTTAA+TGG 0.339587 8_4:+4715881 None:intergenic
TATGACAATAAAGAAGTAAT+GGG 0.354119 8_4:+4716194 None:intergenic
CGTAGATCATTCTGAAGATA+TGG 0.365781 8_4:+4714902 None:intergenic
GTGCTTGGTCTTGTTGCAAC+TGG 0.375439 8_4:-4715951 Msa1308430:CDS
CTTTGGCTTTGCAGAGATGA+TGG 0.383227 8_4:+4714844 None:intergenic
TGGTCTTGTTGCAACTGGTT+TGG 0.399632 8_4:-4715946 Msa1308430:CDS
ACTCACCGGAAAGCTCTTCC+AGG 0.411588 8_4:-4714798 Msa1308430:CDS
TTTCTTTCAATGGTAGGTTA+AGG 0.416462 8_4:+4715029 None:intergenic
GGCTCAAGCTATGGCATCAA+TGG 0.422031 8_4:-4716141 Msa1308430:CDS
GGAGGGCCACCAACTTTAAT+GGG 0.432194 8_4:+4715882 None:intergenic
TGTTAAAGCACAACAACAAC+AGG 0.432911 8_4:-4715991 Msa1308430:CDS
TTAACCTACCATTGAAAGAA+AGG 0.436888 8_4:-4715027 Msa1308430:CDS
TTGCAGAGATGATGGTGTTA+AGG 0.438783 8_4:+4714852 None:intergenic
GCTGCCTCAGTTGGTGTCAA+TGG 0.441161 8_4:+4714992 None:intergenic
AGGTAGAACCTTTCTTTCAA+TGG 0.442299 8_4:+4715019 None:intergenic
CTTTCCGGTGAGTTCCTTGA+GGG 0.450519 8_4:+4714808 None:intergenic
TTCAACTGAGTGGCTCAAAC+AGG 0.452409 8_4:-4716070 Msa1308430:CDS
AAGAAGTAATGGGGATGAAA+AGG 0.455959 8_4:+4716204 None:intergenic
GTCTCAGAGCTGGCTATCTT+CGG 0.456619 8_4:-4714880 Msa1308430:CDS
GCTCTTGCAGCTGCCTCAGT+TGG 0.457785 8_4:+4714983 None:intergenic
GCCATTCCCATTAAAGTTGG+TGG 0.462320 8_4:-4715888 Msa1308430:CDS
TACTTACATTGTCGATATCC+TGG 0.468976 8_4:+4714780 None:intergenic
AGGCCACCAGAAGGTGGAGG+AGG 0.471417 8_4:+4715864 None:intergenic
GGCCCTCCTCCACCTTCTGG+TGG 0.478722 8_4:-4715867 Msa1308430:CDS
CAAGCTATGGCATCAATGGC+TGG 0.483768 8_4:-4716137 Msa1308430:CDS
CTCTACAATGGCTCAAGCTA+TGG 0.486675 8_4:-4716150 Msa1308430:exon
CAAGTGGAAAATGTTAGATA+AGG 0.506588 8_4:-4716278 Msa1308430:five_prime_UTR
AGAACCTTTCTTTCAATGGT+AGG 0.507585 8_4:+4715023 None:intergenic
TGAGGCAGCTGCAAGAGCTA+AGG 0.508030 8_4:-4714978 Msa1308430:CDS
GCCACCAACTTTAATGGGAA+TGG 0.510062 8_4:+4715887 None:intergenic
TGTTCAAGCTGTTCTTGCTG+AGG 0.514649 8_4:-4715910 Msa1308430:CDS
AAGAACAGCTTGAACAAAAG+AGG 0.520210 8_4:+4715917 None:intergenic
TTCATCATCTCAAGCTGTGA+TGG 0.526246 8_4:-4716102 Msa1308430:CDS
TCAATGGCTGGTTGCTTACG+TGG 0.530127 8_4:-4716125 Msa1308430:CDS
GAGGCCATTCCCATTAAAGT+TGG 0.533037 8_4:-4715891 Msa1308430:CDS
AAAATTTGCTATAAGCAAGC+AGG 0.535603 8_4:-4714093 Msa1308430:three_prime_UTR
TTATGACAATAAAGAAGTAA+TGG 0.539084 8_4:+4716193 None:intergenic
AGTAGCAGAAGAGCAGTGCT+TGG 0.543090 8_4:-4715966 Msa1308430:CDS
AATGATCTACGTCTCAGAGC+TGG 0.548338 8_4:-4714890 Msa1308430:CDS
TAGTACTTCTCTGCATCTGA+GGG 0.548759 8_4:+4714260 None:intergenic
AGTTCATAGACCAGAAAGCT+TGG 0.554807 8_4:-4714925 Msa1308430:CDS
GGCCACCAGAAGGTGGAGGA+GGG 0.557926 8_4:+4715865 None:intergenic
TTGCTGATAATTAGATGACT+TGG 0.566702 8_4:-4714025 Msa1308430:three_prime_UTR
CAGTTGGTGTCAATGGTTGA+AGG 0.570020 8_4:+4714999 None:intergenic
ATAGTACTTCTCTGCATCTG+AGG 0.575292 8_4:+4714259 None:intergenic
ATGTGAAAATCAGAGCACTT+AGG 0.576849 8_4:+4713972 None:intergenic
TCATCTCAAGCTGTGATGGA+AGG 0.586825 8_4:-4716098 Msa1308430:CDS
CGAAGGCCACCAGAAGGTGG+AGG 0.590512 8_4:+4715861 None:intergenic
ATTCTTCTACTTCTCTACAA+TGG 0.604207 8_4:-4716162 Msa1308430:exon
AAATCCCTCAAGGAACTCAC+CGG 0.605407 8_4:-4714812 Msa1308430:CDS
GCTTTCCGGTGAGTTCCTTG+AGG 0.616393 8_4:+4714807 None:intergenic
CATGATCCAACTTATCCAAG+TGG 0.618047 8_4:-4716294 None:intergenic
ATGACAATAAAGAAGTAATG+GGG 0.618070 8_4:+4716195 None:intergenic
TTACGAAGGCCACCAGAAGG+TGG 0.625990 8_4:+4715858 None:intergenic
CATCATCTCTGCAAAGCCAA+AGG 0.627597 8_4:-4714843 Msa1308430:CDS
AACAGGTTGAACATGTTGCA+TGG 0.634835 8_4:-4716053 Msa1308430:CDS
GCATGGTAGCAACAGTAACA+AGG 0.637680 8_4:-4716036 Msa1308430:CDS
TACTTACGAAGGCCACCAGA+AGG 0.643651 8_4:+4715855 None:intergenic
AGTACTTCTCTGCATCTGAG+GGG 0.682536 8_4:+4714261 None:intergenic
GAAGGAAGTCTTCAACTGAG+TGG 0.698457 8_4:-4716080 Msa1308430:CDS
TCAACCATTGACACCAACTG+AGG 0.698559 8_4:-4714996 Msa1308430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACATTTATTAAGAATGA+TGG - chr8_4:4714493-4714512 Msa1308430:intron 15.0%
!!! TATACAATATTACATTTTCA+AGG - chr8_4:4715434-4715453 Msa1308430:intron 15.0%
!!! TTGTTTTTATTGTTTTAAGA+AGG - chr8_4:4716256-4716275 Msa1308430:five_prime_UTR 15.0%
!! TTTACATTTATTAAGAATGA+TGG - chr8_4:4714493-4714512 Msa1308430:intron 15.0%
!!! TATACAATATTACATTTTCA+AGG - chr8_4:4715434-4715453 Msa1308430:intron 15.0%
!!! TTGTTTTTATTGTTTTAAGA+AGG - chr8_4:4716256-4716275 Msa1308430:five_prime_UTR 15.0%
!! TATGACAATAAAGAAGTAAT+GGG + chr8_4:4714002-4714021 None:intergenic 20.0%
!! TTATGACAATAAAGAAGTAA+TGG + chr8_4:4714003-4714022 None:intergenic 20.0%
!! TTAAATATGAATACTTACGA+AGG + chr8_4:4714352-4714371 None:intergenic 20.0%
!!! TATTTTACCTCTAATTGTAA+TGG - chr8_4:4714530-4714549 Msa1308430:intron 20.0%
!! AAAAAAATGACTAAATTTGC+TGG + chr8_4:4714642-4714661 None:intergenic 20.0%
!!! ATGATATTGCTATTTGAATT+CGG - chr8_4:4714717-4714736 Msa1308430:intron 20.0%
!! TTACAAGAAAAGAAAGAAAT+AGG + chr8_4:4714949-4714968 None:intergenic 20.0%
!!! TTCAACATTCTAGAAATTAT+TGG + chr8_4:4715088-4715107 None:intergenic 20.0%
!!! ATGTTGAATTAACTGATTTA+TGG - chr8_4:4715100-4715119 Msa1308430:intron 20.0%
!!! ATTAACTGATTTATGGAATT+TGG - chr8_4:4715107-4715126 Msa1308430:intron 20.0%
!!! TAAATTTGTTGTTGTATTAC+TGG - chr8_4:4715459-4715478 Msa1308430:intron 20.0%
!! TAAATATCGATCTTAAAATC+AGG + chr8_4:4715600-4715619 None:intergenic 20.0%
!! TATGACAATAAAGAAGTAAT+GGG + chr8_4:4714002-4714021 None:intergenic 20.0%
!! TTATGACAATAAAGAAGTAA+TGG + chr8_4:4714003-4714022 None:intergenic 20.0%
!! TTAAATATGAATACTTACGA+AGG + chr8_4:4714352-4714371 None:intergenic 20.0%
!!! TATTTTACCTCTAATTGTAA+TGG - chr8_4:4714530-4714549 Msa1308430:intron 20.0%
!! AAAAAAATGACTAAATTTGC+TGG + chr8_4:4714642-4714661 None:intergenic 20.0%
!!! ATGATATTGCTATTTGAATT+CGG - chr8_4:4714717-4714736 Msa1308430:intron 20.0%
!! TTACAAGAAAAGAAAGAAAT+AGG + chr8_4:4714949-4714968 None:intergenic 20.0%
!!! TTCAACATTCTAGAAATTAT+TGG + chr8_4:4715088-4715107 None:intergenic 20.0%
!!! ATGTTGAATTAACTGATTTA+TGG - chr8_4:4715100-4715119 Msa1308430:intron 20.0%
!!! ATTAACTGATTTATGGAATT+TGG - chr8_4:4715107-4715126 Msa1308430:intron 20.0%
!!! TAAATTTGTTGTTGTATTAC+TGG - chr8_4:4715459-4715478 Msa1308430:intron 20.0%
!! TAAATATCGATCTTAAAATC+AGG + chr8_4:4715600-4715619 None:intergenic 20.0%
! ATGACAATAAAGAAGTAATG+GGG + chr8_4:4714001-4714020 None:intergenic 25.0%
! GTATTTATATTTGAGTCAAG+AGG + chr8_4:4714468-4714487 None:intergenic 25.0%
! TAGAATAGTAACATTAAGTG+TGG - chr8_4:4714584-4714603 Msa1308430:intron 25.0%
! AATGAAAGTTTGCAATTTCT+TGG + chr8_4:4714816-4714835 None:intergenic 25.0%
! TATTCTCCTATTAAGAACAT+CGG + chr8_4:4714902-4714921 None:intergenic 25.0%
! ATGTTCTTAATAGGAGAATA+CGG - chr8_4:4714902-4714921 Msa1308430:CDS 25.0%
!! ACATTCTAGAAATTATTGGA+TGG + chr8_4:4715084-4715103 None:intergenic 25.0%
! CTAAATTGATAAAGAGCTAT+CGG + chr8_4:4715838-4715857 None:intergenic 25.0%
! AATGATGTTCTTAGCAAAAT+TGG - chr8_4:4715978-4715997 Msa1308430:CDS 25.0%
! TCACTTTATGCAATTCTTAA+TGG - chr8_4:4716133-4716152 Msa1308430:CDS 25.0%
! ATGACAATAAAGAAGTAATG+GGG + chr8_4:4714001-4714020 None:intergenic 25.0%
! GTATTTATATTTGAGTCAAG+AGG + chr8_4:4714468-4714487 None:intergenic 25.0%
! TAGAATAGTAACATTAAGTG+TGG - chr8_4:4714584-4714603 Msa1308430:intron 25.0%
! AATGAAAGTTTGCAATTTCT+TGG + chr8_4:4714816-4714835 None:intergenic 25.0%
! TATTCTCCTATTAAGAACAT+CGG + chr8_4:4714902-4714921 None:intergenic 25.0%
! ATGTTCTTAATAGGAGAATA+CGG - chr8_4:4714902-4714921 Msa1308430:CDS 25.0%
!! ACATTCTAGAAATTATTGGA+TGG + chr8_4:4715084-4715103 None:intergenic 25.0%
! CTAAATTGATAAAGAGCTAT+CGG + chr8_4:4715838-4715857 None:intergenic 25.0%
! AATGATGTTCTTAGCAAAAT+TGG - chr8_4:4715978-4715997 Msa1308430:CDS 25.0%
! TCACTTTATGCAATTCTTAA+TGG - chr8_4:4716133-4716152 Msa1308430:CDS 25.0%
! CTTATCTAACATTTTCCACT+TGG + chr8_4:4713917-4713936 None:intergenic 30.0%
CAAGTGGAAAATGTTAGATA+AGG - chr8_4:4713915-4713934 Msa1308430:three_prime_UTR 30.0%
ATTCTTCTACTTCTCTACAA+TGG - chr8_4:4714031-4714050 Msa1308430:three_prime_UTR 30.0%
TGTTGTCAATTCAAGTAACA+TGG - chr8_4:4714419-4714438 Msa1308430:intron 30.0%
GAGATAACCATTACAATTAG+AGG + chr8_4:4714540-4714559 None:intergenic 30.0%
TATTCTAGCATTCAGAACAT+CGG - chr8_4:4714764-4714783 Msa1308430:intron 30.0%
AGAAATTATTGGATGGTAAC+TGG + chr8_4:4715077-4715096 None:intergenic 30.0%
TTTCTTTCAATGGTAGGTTA+AGG + chr8_4:4715167-4715186 None:intergenic 30.0%
TTAACCTACCATTGAAAGAA+AGG - chr8_4:4715166-4715185 Msa1308430:intron 30.0%
AGTTAATGTTGTCTCAATTG+CGG - chr8_4:4715768-4715787 Msa1308430:intron 30.0%
CGATAGCTCTTTATCAATTT+AGG - chr8_4:4715836-4715855 Msa1308430:intron 30.0%
! TCTTTATCAATTTAGGACTG+TGG - chr8_4:4715843-4715862 Msa1308430:intron 30.0%
!! AAAATTTGCTATAAGCAAGC+AGG - chr8_4:4716100-4716119 Msa1308430:CDS 30.0%
TTGCTGATAATTAGATGACT+TGG - chr8_4:4716168-4716187 Msa1308430:five_prime_UTR 30.0%
! TAACATTTTCCACTTGGATA+AGG + chr8_4:4713911-4713930 None:intergenic 30.0%
! CTTATCTAACATTTTCCACT+TGG + chr8_4:4713917-4713936 None:intergenic 30.0%
CAAGTGGAAAATGTTAGATA+AGG - chr8_4:4713915-4713934 Msa1308430:three_prime_UTR 30.0%
ATTCTTCTACTTCTCTACAA+TGG - chr8_4:4714031-4714050 Msa1308430:three_prime_UTR 30.0%
TGTTGTCAATTCAAGTAACA+TGG - chr8_4:4714419-4714438 Msa1308430:intron 30.0%
GAGATAACCATTACAATTAG+AGG + chr8_4:4714540-4714559 None:intergenic 30.0%
TATTCTAGCATTCAGAACAT+CGG - chr8_4:4714764-4714783 Msa1308430:intron 30.0%
AGAAATTATTGGATGGTAAC+TGG + chr8_4:4715077-4715096 None:intergenic 30.0%
TTTCTTTCAATGGTAGGTTA+AGG + chr8_4:4715167-4715186 None:intergenic 30.0%
TTAACCTACCATTGAAAGAA+AGG - chr8_4:4715166-4715185 Msa1308430:intron 30.0%
AGTTAATGTTGTCTCAATTG+CGG - chr8_4:4715768-4715787 Msa1308430:intron 30.0%
CGATAGCTCTTTATCAATTT+AGG - chr8_4:4715836-4715855 Msa1308430:intron 30.0%
! TCTTTATCAATTTAGGACTG+TGG - chr8_4:4715843-4715862 Msa1308430:intron 30.0%
!! AAAATTTGCTATAAGCAAGC+AGG - chr8_4:4716100-4716119 Msa1308430:CDS 30.0%
TTGCTGATAATTAGATGACT+TGG - chr8_4:4716168-4716187 Msa1308430:five_prime_UTR 30.0%
! AAGAAGTAATGGGGATGAAA+AGG + chr8_4:4713992-4714011 None:intergenic 35.0%
TGTTAAAGCACAACAACAAC+AGG - chr8_4:4714202-4714221 Msa1308430:exon 35.0%
AAGAACAGCTTGAACAAAAG+AGG + chr8_4:4714279-4714298 None:intergenic 35.0%
CAAGTAACATGGTAAAACCT+TGG - chr8_4:4714430-4714449 Msa1308430:intron 35.0%
ATCATTAGATCAAGACCGAA+CGG - chr8_4:4714789-4714808 Msa1308430:CDS 35.0%
GAACTTGATTCTGAATTGTC+CGG - chr8_4:4714859-4714878 Msa1308430:CDS 35.0%
ATTGTCCGGTCTTGATTAAA+TGG - chr8_4:4714873-4714892 Msa1308430:CDS 35.0%
AAATAGGTTTCCATGCAGTA+GGG + chr8_4:4714933-4714952 None:intergenic 35.0%
AGAACCTTTCTTTCAATGGT+AGG + chr8_4:4715173-4715192 None:intergenic 35.0%
AGGTAGAACCTTTCTTTCAA+TGG + chr8_4:4715177-4715196 None:intergenic 35.0%
! CGTAGATCATTCTGAAGATA+TGG + chr8_4:4715294-4715313 None:intergenic 35.0%
TACTTACATTGTCGATATCC+TGG + chr8_4:4715416-4715435 None:intergenic 35.0%
ACTGCAGATAATCACGTATT+TGG - chr8_4:4715501-4715520 Msa1308430:intron 35.0%
TCACGTATTTGGATTGCTTA+TGG - chr8_4:4715512-4715531 Msa1308430:intron 35.0%
CAGCAAATTGGTTGTAAAGT+TGG + chr8_4:4715684-4715703 None:intergenic 35.0%
CATTCATGTAGTCAGCAAAT+TGG + chr8_4:4715696-4715715 None:intergenic 35.0%
CAATCCAAATTCGAGAATCA+CGG - chr8_4:4715737-4715756 Msa1308430:intron 35.0%
GTTAACGACATAAAAACCCA+CGG - chr8_4:4715801-4715820 Msa1308430:intron 35.0%
! ATTTAGGACTGTGGAAAGAT+TGG - chr8_4:4715852-4715871 Msa1308430:intron 35.0%
! TCTTGTGTAAGCTTTGTCTA+TGG - chr8_4:4716024-4716043 Msa1308430:CDS 35.0%
! ATGTGAAAATCAGAGCACTT+AGG + chr8_4:4716224-4716243 None:intergenic 35.0%
AGAAGGTGAGAACAAAAAGA+AGG - chr8_4:4716273-4716292 Msa1308430:five_prime_UTR 35.0%
! AAGAAGTAATGGGGATGAAA+AGG + chr8_4:4713992-4714011 None:intergenic 35.0%
TGTTAAAGCACAACAACAAC+AGG - chr8_4:4714202-4714221 Msa1308430:exon 35.0%
AAGAACAGCTTGAACAAAAG+AGG + chr8_4:4714279-4714298 None:intergenic 35.0%
CAAGTAACATGGTAAAACCT+TGG - chr8_4:4714430-4714449 Msa1308430:intron 35.0%
ATCATTAGATCAAGACCGAA+CGG - chr8_4:4714789-4714808 Msa1308430:CDS 35.0%
GAACTTGATTCTGAATTGTC+CGG - chr8_4:4714859-4714878 Msa1308430:CDS 35.0%
ATTGTCCGGTCTTGATTAAA+TGG - chr8_4:4714873-4714892 Msa1308430:CDS 35.0%
AAATAGGTTTCCATGCAGTA+GGG + chr8_4:4714933-4714952 None:intergenic 35.0%
AGAACCTTTCTTTCAATGGT+AGG + chr8_4:4715173-4715192 None:intergenic 35.0%
AGGTAGAACCTTTCTTTCAA+TGG + chr8_4:4715177-4715196 None:intergenic 35.0%
! CGTAGATCATTCTGAAGATA+TGG + chr8_4:4715294-4715313 None:intergenic 35.0%
TACTTACATTGTCGATATCC+TGG + chr8_4:4715416-4715435 None:intergenic 35.0%
ACTGCAGATAATCACGTATT+TGG - chr8_4:4715501-4715520 Msa1308430:intron 35.0%
TCACGTATTTGGATTGCTTA+TGG - chr8_4:4715512-4715531 Msa1308430:intron 35.0%
CAGCAAATTGGTTGTAAAGT+TGG + chr8_4:4715684-4715703 None:intergenic 35.0%
CATTCATGTAGTCAGCAAAT+TGG + chr8_4:4715696-4715715 None:intergenic 35.0%
CAATCCAAATTCGAGAATCA+CGG - chr8_4:4715737-4715756 Msa1308430:intron 35.0%
GTTAACGACATAAAAACCCA+CGG - chr8_4:4715801-4715820 Msa1308430:intron 35.0%
! ATTTAGGACTGTGGAAAGAT+TGG - chr8_4:4715852-4715871 Msa1308430:intron 35.0%
! TCTTGTGTAAGCTTTGTCTA+TGG - chr8_4:4716024-4716043 Msa1308430:CDS 35.0%
! ATGTGAAAATCAGAGCACTT+AGG + chr8_4:4716224-4716243 None:intergenic 35.0%
AGAAGGTGAGAACAAAAAGA+AGG - chr8_4:4716273-4716292 Msa1308430:five_prime_UTR 35.0%
TTCATCATCTCAAGCTGTGA+TGG - chr8_4:4714091-4714110 Msa1308430:three_prime_UTR 40.0%
! AACAGGTTGAACATGTTGCA+TGG - chr8_4:4714140-4714159 Msa1308430:three_prime_UTR 40.0%
AGAGGCAGTAACATATACCA+AGG + chr8_4:4714450-4714469 None:intergenic 40.0%
ACACACAACATGGATGAGAT+GGG - chr8_4:4714694-4714713 Msa1308430:intron 40.0%
AATTCGGAGTACATGCAGTT+AGG - chr8_4:4714733-4714752 Msa1308430:intron 40.0%
TTGCAATTTCTTGGACCGTT+CGG + chr8_4:4714807-4714826 None:intergenic 40.0%
! GGTTGCCATTTAATCAAGAC+CGG + chr8_4:4714881-4714900 None:intergenic 40.0%
TGGCAACCGATGTTCTTAAT+AGG - chr8_4:4714893-4714912 Msa1308430:CDS 40.0%
GAAATAGGTTTCCATGCAGT+AGG + chr8_4:4714934-4714953 None:intergenic 40.0%
GATTTATGGAATTTGGCAGC+TGG - chr8_4:4715114-4715133 Msa1308430:intron 40.0%
AGTTCATAGACCAGAAAGCT+TGG - chr8_4:4715268-4715287 Msa1308430:intron 40.0%
! TTGCAGAGATGATGGTGTTA+AGG + chr8_4:4715344-4715363 None:intergenic 40.0%
!!! AGGGATTTTTTCTGGTCCTT+TGG + chr8_4:4715369-4715388 None:intergenic 40.0%
!!! GTTCCTTGAGGGATTTTTTC+TGG + chr8_4:4715377-4715396 None:intergenic 40.0%
ATCTGCAGTCTCAAGAACTT+CGG + chr8_4:4715490-4715509 None:intergenic 40.0%
TTGACCGTGATTCTCGAATT+TGG + chr8_4:4715744-4715763 None:intergenic 40.0%
! TTTTCTTCTTTGTTCCCAGC+TGG - chr8_4:4715887-4715906 Msa1308430:CDS 40.0%
! TTTTGCTGCATAATCCAGCT+GGG + chr8_4:4715904-4715923 None:intergenic 40.0%
TAGTACTTCTCTGCATCTGA+GGG + chr8_4:4715936-4715955 None:intergenic 40.0%
ATAGTACTTCTCTGCATCTG+AGG + chr8_4:4715937-4715956 None:intergenic 40.0%
TTCATCATCTCAAGCTGTGA+TGG - chr8_4:4714091-4714110 Msa1308430:three_prime_UTR 40.0%
! AACAGGTTGAACATGTTGCA+TGG - chr8_4:4714140-4714159 Msa1308430:three_prime_UTR 40.0%
AGAGGCAGTAACATATACCA+AGG + chr8_4:4714450-4714469 None:intergenic 40.0%
ACACACAACATGGATGAGAT+GGG - chr8_4:4714694-4714713 Msa1308430:intron 40.0%
AATTCGGAGTACATGCAGTT+AGG - chr8_4:4714733-4714752 Msa1308430:intron 40.0%
TTGCAATTTCTTGGACCGTT+CGG + chr8_4:4714807-4714826 None:intergenic 40.0%
! GGTTGCCATTTAATCAAGAC+CGG + chr8_4:4714881-4714900 None:intergenic 40.0%
TGGCAACCGATGTTCTTAAT+AGG - chr8_4:4714893-4714912 Msa1308430:CDS 40.0%
GAAATAGGTTTCCATGCAGT+AGG + chr8_4:4714934-4714953 None:intergenic 40.0%
GATTTATGGAATTTGGCAGC+TGG - chr8_4:4715114-4715133 Msa1308430:intron 40.0%
AGTTCATAGACCAGAAAGCT+TGG - chr8_4:4715268-4715287 Msa1308430:intron 40.0%
! TTGCAGAGATGATGGTGTTA+AGG + chr8_4:4715344-4715363 None:intergenic 40.0%
!!! AGGGATTTTTTCTGGTCCTT+TGG + chr8_4:4715369-4715388 None:intergenic 40.0%
!!! GTTCCTTGAGGGATTTTTTC+TGG + chr8_4:4715377-4715396 None:intergenic 40.0%
ATCTGCAGTCTCAAGAACTT+CGG + chr8_4:4715490-4715509 None:intergenic 40.0%
TTGACCGTGATTCTCGAATT+TGG + chr8_4:4715744-4715763 None:intergenic 40.0%
! TTTTCTTCTTTGTTCCCAGC+TGG - chr8_4:4715887-4715906 Msa1308430:CDS 40.0%
! TTTTGCTGCATAATCCAGCT+GGG + chr8_4:4715904-4715923 None:intergenic 40.0%
TAGTACTTCTCTGCATCTGA+GGG + chr8_4:4715936-4715955 None:intergenic 40.0%
ATAGTACTTCTCTGCATCTG+AGG + chr8_4:4715937-4715956 None:intergenic 40.0%
CTCTACAATGGCTCAAGCTA+TGG - chr8_4:4714043-4714062 Msa1308430:three_prime_UTR 45.0%
! TCATCTCAAGCTGTGATGGA+AGG - chr8_4:4714095-4714114 Msa1308430:three_prime_UTR 45.0%
GAAGGAAGTCTTCAACTGAG+TGG - chr8_4:4714113-4714132 Msa1308430:three_prime_UTR 45.0%
TTCAACTGAGTGGCTCAAAC+AGG - chr8_4:4714123-4714142 Msa1308430:three_prime_UTR 45.0%
GCATGGTAGCAACAGTAACA+AGG - chr8_4:4714157-4714176 Msa1308430:three_prime_UTR 45.0%
!! TGGTCTTGTTGCAACTGGTT+TGG - chr8_4:4714247-4714266 Msa1308430:CDS 45.0%
TGTTCAAGCTGTTCTTGCTG+AGG - chr8_4:4714283-4714302 Msa1308430:CDS 45.0%
GAGGCCATTCCCATTAAAGT+TGG - chr8_4:4714302-4714321 Msa1308430:intron 45.0%
GCCATTCCCATTAAAGTTGG+TGG - chr8_4:4714305-4714324 Msa1308430:intron 45.0%
GCCACCAACTTTAATGGGAA+TGG + chr8_4:4714309-4714328 None:intergenic 45.0%
! GAGAGTACACACACACAACA+TGG - chr8_4:4714684-4714703 Msa1308430:intron 45.0%
CACACACAACATGGATGAGA+TGG - chr8_4:4714693-4714712 Msa1308430:intron 45.0%
!! CAGTTGGTGTCAATGGTTGA+AGG + chr8_4:4715197-4715216 None:intergenic 45.0%
TCAACCATTGACACCAACTG+AGG - chr8_4:4715197-4715216 Msa1308430:intron 45.0%
GAAGATATGGCCAAGCTTTC+TGG + chr8_4:4715281-4715300 None:intergenic 45.0%
AATGATCTACGTCTCAGAGC+TGG - chr8_4:4715303-4715322 Msa1308430:intron 45.0%
!! CTTTGGCTTTGCAGAGATGA+TGG + chr8_4:4715352-4715371 None:intergenic 45.0%
CATCATCTCTGCAAAGCCAA+AGG - chr8_4:4715350-4715369 Msa1308430:intron 45.0%
GGACCAGAAAAAATCCCTCA+AGG - chr8_4:4715371-4715390 Msa1308430:intron 45.0%
AAATCCCTCAAGGAACTCAC+CGG - chr8_4:4715381-4715400 Msa1308430:intron 45.0%
GATATCCTGGAAGAGCTTTC+CGG + chr8_4:4715403-4715422 None:intergenic 45.0%
TCATGCAGTCAGCACATTTG+TGG - chr8_4:4715551-4715570 Msa1308430:intron 45.0%
GTCAGCACATTTGTGGTTGA+TGG - chr8_4:4715558-4715577 Msa1308430:intron 45.0%
!! TGTGGTTGATGGATCGAGAT+TGG - chr8_4:4715569-4715588 Msa1308430:intron 45.0%
TCTCGAATTTGGATTGCCTG+CGG + chr8_4:4715733-4715752 None:intergenic 45.0%
! CTTTTGCTGCATAATCCAGC+TGG + chr8_4:4715905-4715924 None:intergenic 45.0%
AGTACTTCTCTGCATCTGAG+GGG + chr8_4:4715935-4715954 None:intergenic 45.0%
CTCTACAATGGCTCAAGCTA+TGG - chr8_4:4714043-4714062 Msa1308430:three_prime_UTR 45.0%
! TCATCTCAAGCTGTGATGGA+AGG - chr8_4:4714095-4714114 Msa1308430:three_prime_UTR 45.0%
GAAGGAAGTCTTCAACTGAG+TGG - chr8_4:4714113-4714132 Msa1308430:three_prime_UTR 45.0%
TTCAACTGAGTGGCTCAAAC+AGG - chr8_4:4714123-4714142 Msa1308430:three_prime_UTR 45.0%
GCATGGTAGCAACAGTAACA+AGG - chr8_4:4714157-4714176 Msa1308430:three_prime_UTR 45.0%
!! TGGTCTTGTTGCAACTGGTT+TGG - chr8_4:4714247-4714266 Msa1308430:CDS 45.0%
TGTTCAAGCTGTTCTTGCTG+AGG - chr8_4:4714283-4714302 Msa1308430:CDS 45.0%
GAGGCCATTCCCATTAAAGT+TGG - chr8_4:4714302-4714321 Msa1308430:intron 45.0%
GCCATTCCCATTAAAGTTGG+TGG - chr8_4:4714305-4714324 Msa1308430:intron 45.0%
GCCACCAACTTTAATGGGAA+TGG + chr8_4:4714309-4714328 None:intergenic 45.0%
! GAGAGTACACACACACAACA+TGG - chr8_4:4714684-4714703 Msa1308430:intron 45.0%
CACACACAACATGGATGAGA+TGG - chr8_4:4714693-4714712 Msa1308430:intron 45.0%
!! CAGTTGGTGTCAATGGTTGA+AGG + chr8_4:4715197-4715216 None:intergenic 45.0%
TCAACCATTGACACCAACTG+AGG - chr8_4:4715197-4715216 Msa1308430:intron 45.0%
GAAGATATGGCCAAGCTTTC+TGG + chr8_4:4715281-4715300 None:intergenic 45.0%
AATGATCTACGTCTCAGAGC+TGG - chr8_4:4715303-4715322 Msa1308430:intron 45.0%
!! CTTTGGCTTTGCAGAGATGA+TGG + chr8_4:4715352-4715371 None:intergenic 45.0%
CATCATCTCTGCAAAGCCAA+AGG - chr8_4:4715350-4715369 Msa1308430:intron 45.0%
GGACCAGAAAAAATCCCTCA+AGG - chr8_4:4715371-4715390 Msa1308430:intron 45.0%
AAATCCCTCAAGGAACTCAC+CGG - chr8_4:4715381-4715400 Msa1308430:intron 45.0%
GATATCCTGGAAGAGCTTTC+CGG + chr8_4:4715403-4715422 None:intergenic 45.0%
TCATGCAGTCAGCACATTTG+TGG - chr8_4:4715551-4715570 Msa1308430:intron 45.0%
GTCAGCACATTTGTGGTTGA+TGG - chr8_4:4715558-4715577 Msa1308430:intron 45.0%
!! TGTGGTTGATGGATCGAGAT+TGG - chr8_4:4715569-4715588 Msa1308430:intron 45.0%
TCTCGAATTTGGATTGCCTG+CGG + chr8_4:4715733-4715752 None:intergenic 45.0%
! CTTTTGCTGCATAATCCAGC+TGG + chr8_4:4715905-4715924 None:intergenic 45.0%
AGTACTTCTCTGCATCTGAG+GGG + chr8_4:4715935-4715954 None:intergenic 45.0%
GGCTCAAGCTATGGCATCAA+TGG - chr8_4:4714052-4714071 Msa1308430:three_prime_UTR 50.0%
CAAGCTATGGCATCAATGGC+TGG - chr8_4:4714056-4714075 Msa1308430:three_prime_UTR 50.0%
! TCAATGGCTGGTTGCTTACG+TGG - chr8_4:4714068-4714087 Msa1308430:three_prime_UTR 50.0%
AGTAGCAGAAGAGCAGTGCT+TGG - chr8_4:4714227-4714246 Msa1308430:CDS 50.0%
!! GTGCTTGGTCTTGTTGCAAC+TGG - chr8_4:4714242-4714261 Msa1308430:CDS 50.0%
GGAGGGCCACCAACTTTAAT+GGG + chr8_4:4714314-4714333 None:intergenic 50.0%
AGGAGGGCCACCAACTTTAA+TGG + chr8_4:4714315-4714334 None:intergenic 50.0%
TACTTACGAAGGCCACCAGA+AGG + chr8_4:4714341-4714360 None:intergenic 50.0%
TACGGTGAATCCCTACTGCA+TGG - chr8_4:4714920-4714939 Msa1308430:CDS 50.0%
GTCTCAGAGCTGGCTATCTT+CGG - chr8_4:4715313-4715332 Msa1308430:intron 50.0%
CTTTCCGGTGAGTTCCTTGA+GGG + chr8_4:4715388-4715407 None:intergenic 50.0%
GGCTCAAGCTATGGCATCAA+TGG - chr8_4:4714052-4714071 Msa1308430:three_prime_UTR 50.0%
CAAGCTATGGCATCAATGGC+TGG - chr8_4:4714056-4714075 Msa1308430:three_prime_UTR 50.0%
! TCAATGGCTGGTTGCTTACG+TGG - chr8_4:4714068-4714087 Msa1308430:three_prime_UTR 50.0%
AGTAGCAGAAGAGCAGTGCT+TGG - chr8_4:4714227-4714246 Msa1308430:CDS 50.0%
!! GTGCTTGGTCTTGTTGCAAC+TGG - chr8_4:4714242-4714261 Msa1308430:CDS 50.0%
GGAGGGCCACCAACTTTAAT+GGG + chr8_4:4714314-4714333 None:intergenic 50.0%
AGGAGGGCCACCAACTTTAA+TGG + chr8_4:4714315-4714334 None:intergenic 50.0%
TACTTACGAAGGCCACCAGA+AGG + chr8_4:4714341-4714360 None:intergenic 50.0%
TACGGTGAATCCCTACTGCA+TGG - chr8_4:4714920-4714939 Msa1308430:CDS 50.0%
GTCTCAGAGCTGGCTATCTT+CGG - chr8_4:4715313-4715332 Msa1308430:intron 50.0%
CTTTCCGGTGAGTTCCTTGA+GGG + chr8_4:4715388-4715407 None:intergenic 50.0%
TTACGAAGGCCACCAGAAGG+TGG + chr8_4:4714338-4714357 None:intergenic 55.0%
!! GCTGCCTCAGTTGGTGTCAA+TGG + chr8_4:4715204-4715223 None:intergenic 55.0%
TGAGGCAGCTGCAAGAGCTA+AGG - chr8_4:4715215-4715234 Msa1308430:intron 55.0%
GCTTTCCGGTGAGTTCCTTG+AGG + chr8_4:4715389-4715408 None:intergenic 55.0%
ACTCACCGGAAAGCTCTTCC+AGG - chr8_4:4715395-4715414 Msa1308430:intron 55.0%
!! GTGCTGACTGCATGAATGCG+TGG + chr8_4:4715546-4715565 None:intergenic 55.0%
TGCATGAGATTGCTAGCCGC+AGG - chr8_4:4715714-4715733 Msa1308430:intron 55.0%
TCTCAATTGCGGTCACGCTG+TGG - chr8_4:4715779-4715798 Msa1308430:intron 55.0%
ATCGGATTACGCAGCACCGT+GGG + chr8_4:4715820-4715839 None:intergenic 55.0%
TATCGGATTACGCAGCACCG+TGG + chr8_4:4715821-4715840 None:intergenic 55.0%
TTACGAAGGCCACCAGAAGG+TGG + chr8_4:4714338-4714357 None:intergenic 55.0%
!! GCTGCCTCAGTTGGTGTCAA+TGG + chr8_4:4715204-4715223 None:intergenic 55.0%
TGAGGCAGCTGCAAGAGCTA+AGG - chr8_4:4715215-4715234 Msa1308430:intron 55.0%
GCTTTCCGGTGAGTTCCTTG+AGG + chr8_4:4715389-4715408 None:intergenic 55.0%
ACTCACCGGAAAGCTCTTCC+AGG - chr8_4:4715395-4715414 Msa1308430:intron 55.0%
!! GTGCTGACTGCATGAATGCG+TGG + chr8_4:4715546-4715565 None:intergenic 55.0%
TGCATGAGATTGCTAGCCGC+AGG - chr8_4:4715714-4715733 Msa1308430:intron 55.0%
TCTCAATTGCGGTCACGCTG+TGG - chr8_4:4715779-4715798 Msa1308430:intron 55.0%
ATCGGATTACGCAGCACCGT+GGG + chr8_4:4715820-4715839 None:intergenic 55.0%
TATCGGATTACGCAGCACCG+TGG + chr8_4:4715821-4715840 None:intergenic 55.0%
GCTCTTGCAGCTGCCTCAGT+TGG + chr8_4:4715213-4715232 None:intergenic 60.0%
GCTCTTGCAGCTGCCTCAGT+TGG + chr8_4:4715213-4715232 None:intergenic 60.0%
GGCCACCAGAAGGTGGAGGA+GGG + chr8_4:4714331-4714350 None:intergenic 65.0%
AGGCCACCAGAAGGTGGAGG+AGG + chr8_4:4714332-4714351 None:intergenic 65.0%
CGAAGGCCACCAGAAGGTGG+AGG + chr8_4:4714335-4714354 None:intergenic 65.0%
GGCCACCAGAAGGTGGAGGA+GGG + chr8_4:4714331-4714350 None:intergenic 65.0%
AGGCCACCAGAAGGTGGAGG+AGG + chr8_4:4714332-4714351 None:intergenic 65.0%
CGAAGGCCACCAGAAGGTGG+AGG + chr8_4:4714335-4714354 None:intergenic 65.0%
GGTGGCCCTCCTCCACCTTC+TGG - chr8_4:4714323-4714342 Msa1308430:intron 70.0%
GGCCCTCCTCCACCTTCTGG+TGG - chr8_4:4714326-4714345 Msa1308430:intron 70.0%
GGTGGCCCTCCTCCACCTTC+TGG - chr8_4:4714323-4714342 Msa1308430:intron 70.0%
GGCCCTCCTCCACCTTCTGG+TGG - chr8_4:4714326-4714345 Msa1308430:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 4713909 4716306 4713909 ID=Msa1308430;Name=Msa1308430
chr8_4 mRNA 4713909 4716306 4713909 ID=Msa1308430-mRNA-1;Parent=Msa1308430;Name=Msa1308430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=141|1|1|1|1|1|3|302|232
chr8_4 exon 4713909 4714309 4713909 ID=Msa1308430-mRNA-1:exon:1431;Parent=Msa1308430-mRNA-1
chr8_4 exon 4714787 4715082 4714787 ID=Msa1308430-mRNA-1:exon:1430;Parent=Msa1308430-mRNA-1
chr8_4 exon 4715862 4716306 4715862 ID=Msa1308430-mRNA-1:exon:1429;Parent=Msa1308430-mRNA-1
chr8_4 five_prime_UTR 4716166 4716306 4716166 ID=Msa1308430-mRNA-1:five_prime_utr;Parent=Msa1308430-mRNA-1
chr8_4 CDS 4715862 4716165 4715862 ID=Msa1308430-mRNA-1:cds;Parent=Msa1308430-mRNA-1
chr8_4 CDS 4714787 4715082 4714787 ID=Msa1308430-mRNA-1:cds;Parent=Msa1308430-mRNA-1
chr8_4 CDS 4714211 4714309 4714211 ID=Msa1308430-mRNA-1:cds;Parent=Msa1308430-mRNA-1
chr8_4 three_prime_UTR 4713909 4714210 4713909 ID=Msa1308430-mRNA-1:three_prime_utr;Parent=Msa1308430-mRNA-1
Gene Sequence

>Msa1308430

ATGGCTCAAGCTATGGCATCAATGGCTGGTTGCTTACGTGGTTCATCATCTCAAGCTGTGATGGAAGGAAGTCTTCAACTGAGTGGCTCAAACAGGTTGAACATGTTGCATGGTAGCAACAGTAACAAGGTTACACGTTCATCAGTGACAGTTGTTAAAGCACAACAACAACAGGAAAGTAGCAGAAGAGCAGTGCTTGGTCTTGTTGCAACTGGTTTGGTTTCTTCCTCTTTTGTTCAAGCTGTTCTTGCTGAGGCCATTCCCATTAAAGTTGGTGGCCCTCCTCCACCTTCTGGTGGCCTTCCTGGAACACTGAACTCAGATGAAGCAAGAGACCTTAACCTACCATTGAAAGAAAGGTTCTACCTTCAACCATTGACACCAACTGAGGCAGCTGCAAGAGCTAAGGAGTCAGCAAAAGAAATTGTTGCTGCTAAGAAGTTCATAGACCAGAAAGCTTGGCCATATCTTCAGAATGATCTACGTCTCAGAGCTGGCTATCTTCGGTATGACCTTAACACCATCATCTCTGCAAAGCCAAAGGACCAGAAAAAATCCCTCAAGGAACTCACCGGAAAGCTCTTCCAGGATATCGACAATCTGGATTATGCAGCAAAAGTTAAGAGCCCCTCAGATGCAGAGAAGTACTATGCTATAGCTGTATCTACTCTGAATGATGTTCTTAGCAAAATTGGTTAA

Protein sequence

>Msa1308430

MAQAMASMAGCLRGSSSQAVMEGSLQLSGSNRLNMLHGSNSNKVTRSSVTVVKAQQQQESSRRAVLGLVATGLVSSSFVQAVLAEAIPIKVGGPPPPSGGLPGTLNSDEARDLNLPLKERFYLQPLTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTIISAKPKDQKKSLKELTGKLFQDIDNLDYAAKVKSPSDAEKYYAIAVSTLNDVLSKIG*