AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0547810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547810 MtrunA17_Chr4g0030601 89.260 419 18 1 1 392 46 464 0.0 762
Msa0547810 MtrunA17_Chr4g0030581 82.904 427 38 2 1 392 46 472 0.0 706
Msa0547810 MtrunA17_Chr4g0030591 77.103 428 62 2 1 392 46 473 0.0 665
Msa0547810 MtrunA17_Chr2g0327721 65.176 425 108 3 2 387 47 470 0.0 577
Msa0547810 MtrunA17_Chr1g0212951 50.356 421 165 2 2 378 48 468 5.05e-154 443
Msa0547810 MtrunA17_Chr7g0276251 43.266 349 188 3 9 354 145 486 5.05e-96 296
Msa0547810 MtrunA17_Chr4g0063011 40.217 368 207 3 20 379 125 487 2.04e-92 286
Msa0547810 MtrunA17_Chr1g0188051 39.891 366 207 3 24 381 141 501 6.30e-90 280
Msa0547810 MtrunA17_Chr2g0306781 40.437 366 205 3 24 381 34 394 9.95e-89 274
Msa0547810 MtrunA17_Chr1g0166191 39.891 366 207 3 24 381 147 507 1.44e-88 277
Msa0547810 MtrunA17_Chr5g0423521 38.315 368 193 3 23 361 125 487 2.00e-87 273
Msa0547810 MtrunA17_Chr1g0209881 37.228 368 197 3 23 361 125 487 5.20e-87 272
Msa0547810 MtrunA17_Chr4g0035081 38.587 368 192 3 23 361 137 499 3.95e-86 270
Msa0547810 MtrunA17_Chr3g0136561 39.528 339 196 2 23 354 527 863 9.49e-84 273
Msa0547810 MtrunA17_Chr2g0277841 41.088 331 191 2 24 354 86 412 1.18e-81 257
Msa0547810 MtrunA17_Chr6g0480561 39.759 332 194 4 24 354 102 428 2.32e-78 249
Msa0547810 MtrunA17_Chr7g0250661 42.857 287 152 2 103 381 2 284 2.83e-77 241
Msa0547810 MtrunA17_Chr7g0276241 47.619 252 123 3 103 354 2 244 2.89e-77 241
Msa0547810 MtrunA17_Chr2g0282281 37.391 345 206 3 9 352 135 470 1.10e-74 240
Msa0547810 MtrunA17_Chr2g0295781 38.235 306 183 2 51 354 111 412 3.39e-73 235
Msa0547810 MtrunA17_Chr1g0204301 38.922 334 194 5 24 354 120 446 7.96e-73 235
Msa0547810 MtrunA17_Chr3g0115021 36.061 330 205 2 24 353 121 444 4.73e-69 225
Msa0547810 MtrunA17_Chr3g0115041 36.061 330 205 2 24 353 121 444 5.04e-69 225
Msa0547810 MtrunA17_Chr6g0469631 36.061 330 205 2 24 353 120 443 1.06e-62 209
Msa0547810 MtrunA17_Chr6g0461631 39.382 259 133 4 137 381 3 251 9.66e-56 184
Msa0547810 MtrunA17_Chr4g0026871 44.503 191 101 3 165 354 1 187 5.04e-47 160
Msa0547810 MtrunA17_Chr4g0026791 43.716 183 98 3 165 346 1 179 2.51e-43 149
Msa0547810 MtrunA17_Chr4g0026721 41.322 121 67 2 234 354 3 119 1.07e-24 99.0
Msa0547810 MtrunA17_Chr6g0461621 33.333 132 84 3 10 138 88 218 3.00e-16 77.4
Msa0547810 MtrunA17_Chr4g0026861 31.132 106 72 1 33 138 109 213 5.33e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547810 AT1G07720.2 65.349 430 108 4 1 389 89 518 0.0 571
Msa0547810 AT1G07720.1 65.349 430 108 4 1 389 46 475 0.0 570
Msa0547810 AT2G28630.2 63.403 429 116 4 1 389 46 473 0.0 565
Msa0547810 AT2G28630.1 63.403 429 116 4 1 389 46 473 0.0 565
Msa0547810 AT5G04530.1 51.351 407 168 3 2 378 49 455 7.84e-154 442
Msa0547810 AT1G01120.1 42.433 337 185 3 20 354 156 485 1.83e-94 293
Msa0547810 AT2G46720.1 42.515 334 183 3 23 354 97 423 7.05e-92 284
Msa0547810 AT1G25450.1 42.470 332 186 2 23 354 121 447 6.67e-91 282
Msa0547810 AT2G26640.1 39.730 370 210 3 20 381 134 498 3.22e-90 281
Msa0547810 AT1G04220.1 40.974 349 193 5 13 354 129 471 5.98e-89 278
Msa0547810 AT5G43760.1 39.793 387 209 7 13 381 135 515 6.84e-89 278
Msa0547810 AT2G16280.1 41.471 340 194 2 15 354 137 471 9.31e-89 278
Msa0547810 AT1G68530.1 38.043 368 194 3 23 361 126 488 5.98e-88 275
Msa0547810 AT4G34510.1 42.216 334 185 3 23 354 119 446 1.39e-87 274
Msa0547810 AT1G19440.1 38.482 382 195 5 12 361 138 511 1.50e-86 272
Msa0547810 AT3G10280.1 41.018 334 181 4 23 354 97 416 4.15e-85 266
Msa0547810 AT4G34250.1 40.510 353 181 5 5 354 122 448 6.26e-85 267
Msa0547810 AT2G15090.1 39.084 371 184 6 24 361 115 476 1.93e-84 265
Msa0547810 AT4G34520.1 41.617 334 185 3 24 354 125 451 7.78e-84 265
Msa0547810 AT1G71160.1 38.820 322 191 2 33 354 94 409 3.50e-78 248
Msa0547810 AT2G26250.1 34.511 368 218 2 9 354 144 510 7.87e-78 250
Msa0547810 AT5G49070.1 37.243 341 209 4 15 354 80 416 4.25e-71 230
Msa0547810 AT3G52160.2 33.841 328 181 3 27 354 16 307 1.02e-62 205
Msa0547810 AT3G52160.1 33.841 328 181 3 27 354 129 420 1.37e-61 205
Msa0547810 AT1G68530.2 38.326 227 139 1 23 249 126 351 8.43e-54 182
Msa0547810 AT5G49070.2 34.419 215 140 1 34 248 99 312 1.03e-33 128

Find 76 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTTGTTGGCAATATTT+TGG 0.090289 4_1:-41252514 None:intergenic
AAGTATACTTCTGTTCTTTA+AGG 0.095484 4_1:-41252328 None:intergenic
AATCAGAAGAACAGAAAATT+TGG 0.156705 4_1:+41251801 Msa0547810:CDS
CGGCCTTCAAAGACGTTTCT+TGG 0.212496 4_1:-41251892 None:intergenic
GAGAAACAAGTTAGCACTTT+TGG 0.230981 4_1:+41252191 Msa0547810:CDS
TCATTGCCAGTATACCAATT+TGG 0.269157 4_1:-41252234 None:intergenic
AACCTAAGTATTTCCTTTGT+TGG 0.270627 4_1:-41252525 None:intergenic
TAATTATCCACCAAAGTCTT+TGG 0.310010 4_1:+41253026 Msa0547810:CDS
GGCCTTCAAAGACGTTTCTT+GGG 0.332403 4_1:-41251891 None:intergenic
TCAGGAAGTTCATAATTGTT+AGG 0.335455 4_1:-41253096 None:intergenic
GTCTTTGGTCAATCCTTTCA+TGG 0.341262 4_1:+41253041 Msa0547810:CDS
CAGAGTCTCTCTGTCCAAAT+TGG 0.352442 4_1:+41252220 Msa0547810:CDS
AGTAGCTTGTGGTATGTGTT+AGG 0.359473 4_1:+41252762 Msa0547810:CDS
CGATGTAGTGTCATCCTTGC+TGG 0.365030 4_1:-41252720 None:intergenic
AGATCCCGTCGTTCAGTGTT+GGG 0.365852 4_1:-41251924 None:intergenic
AAAGCAGTGATTGATGGAAT+TGG 0.371201 4_1:+41252663 Msa0547810:CDS
CAGCCTCACTTAAGAAAATC+AGG 0.372574 4_1:-41253114 None:intergenic
GACGACAAGAACATCAATTT+CGG 0.379107 4_1:-41252013 None:intergenic
CTCTGTCCAAATTGGTATAC+TGG 0.380545 4_1:+41252228 Msa0547810:CDS
TCACCATTGAATTTCAAAAC+TGG 0.383289 4_1:+41252609 Msa0547810:CDS
AATCCTTTCATGGAGAAGTA+TGG 0.384841 4_1:+41253051 Msa0547810:CDS
GGTAGGCTTGGTGTTCACTT+AGG 0.408733 4_1:+41252432 Msa0547810:CDS
AGGATGACACTACATCGTTT+TGG 0.417938 4_1:+41252726 Msa0547810:CDS
GGAGGAAAAGCAGTGATTGA+TGG 0.421764 4_1:+41252657 Msa0547810:CDS
GTAGGCTTGGTGTTCACTTA+GGG 0.439135 4_1:+41252433 Msa0547810:CDS
CACAACTTACAATGGCTTTG+AGG 0.439424 4_1:-41251846 None:intergenic
ATCAGAAGAACAGAAAATTT+GGG 0.439708 4_1:+41251802 Msa0547810:CDS
CACTCAAAAGGAAGATGAGC+AGG 0.441650 4_1:+41252410 Msa0547810:CDS
GCCCCAAGAAACGTCTTTGA+AGG 0.464018 4_1:+41251889 Msa0547810:CDS
GTAGCTTGTGGTATGTGTTA+GGG 0.465874 4_1:+41252763 Msa0547810:CDS
TGCCAACAAAGGAAATACTT+AGG 0.467344 4_1:+41252523 Msa0547810:CDS
TTACACTTGCTGCACTCAAA+AGG 0.470098 4_1:+41252398 Msa0547810:CDS
GAGATCCCGTCGTTCAGTGT+TGG 0.492490 4_1:-41251925 None:intergenic
GCCATTGTAAGTTGTGGCAT+TGG 0.492812 4_1:+41251853 Msa0547810:CDS
GAAGATGAGCAGGGTAGGCT+TGG 0.501327 4_1:+41252420 Msa0547810:CDS
AGTGTACAATCTCACCGCTA+TGG 0.508010 4_1:+41252113 Msa0547810:CDS
TTTCATGGAGAAGTATGGTT+GGG 0.519323 4_1:+41253056 Msa0547810:CDS
AAAGGATTGACCAAAGACTT+TGG 0.522713 4_1:-41253036 None:intergenic
GCAAGTGTAAGAGTCATCTC+TGG 0.525576 4_1:-41252385 None:intergenic
TCAGTGTTGGGGATCCTTCG+CGG 0.526616 4_1:-41251912 None:intergenic
GTGTACAATCTCACCGCTAT+GGG 0.526782 4_1:+41252114 Msa0547810:CDS
AAGAAACTTAAGAAAACTAG+TGG 0.529244 4_1:+41252567 Msa0547810:CDS
GTGGTATGTGTTAGGGTACA+TGG 0.531641 4_1:+41252770 Msa0547810:CDS
AACGTCTTTGAAGGCCGCGA+AGG 0.538270 4_1:+41251898 Msa0547810:CDS
CAACCATACTTCTCCATGAA+AGG 0.543653 4_1:-41253054 None:intergenic
CTCAAAGCCATTGTAAGTTG+TGG 0.544372 4_1:+41251847 Msa0547810:CDS
GATCCCCAACACTGAACGAC+GGG 0.545206 4_1:+41251920 Msa0547810:CDS
AAGAACATCAATTTCGGAAG+GGG 0.550157 4_1:-41252007 None:intergenic
CCAACACAAGATAGAATGCT+AGG 0.550403 4_1:+41251757 None:intergenic
GCCTTCAAAGACGTTTCTTG+GGG 0.552622 4_1:-41251890 None:intergenic
ATGATTCGCGACGATAAAGA+AGG 0.560777 4_1:-41252060 None:intergenic
ACCCAAAATATTGCCAACAA+AGG 0.563268 4_1:+41252512 Msa0547810:CDS
GCATTGCAAAACTTCTATCA+AGG 0.565531 4_1:+41251974 Msa0547810:CDS
CTTTCATGGAGAAGTATGGT+TGG 0.572414 4_1:+41253055 Msa0547810:CDS
GCCAATGCCACAACTTACAA+TGG 0.575890 4_1:-41251854 None:intergenic
GATCCCGTCGTTCAGTGTTG+GGG 0.581474 4_1:-41251923 None:intergenic
AAAAGGAAGATGAGCAGGGT+AGG 0.586228 4_1:+41252415 Msa0547810:CDS
AAGAGTCATCTCTGGCGCCA+TGG 0.588455 4_1:-41252377 None:intergenic
AATATGATCTTGAGCCAGCA+AGG 0.598452 4_1:+41252706 Msa0547810:CDS
TGGTTGGGTCAATGAAGTTG+AGG 0.602405 4_1:+41253071 Msa0547810:CDS
GAACCGCGCAACCTCCAGAA+CGG 0.607926 4_1:-41252287 None:intergenic
TCCAGAACGGAAAAGACAGT+TGG 0.608061 4_1:-41252274 None:intergenic
AACGGAAAAGACAGTTGGCT+AGG 0.609214 4_1:-41252269 None:intergenic
CAAGAACATCAATTTCGGAA+GGG 0.610099 4_1:-41252008 None:intergenic
ACAAGAACATCAATTTCGGA+AGG 0.613595 4_1:-41252009 None:intergenic
GGATTGACCAAAGACTTTGG+TGG 0.615272 4_1:-41253033 None:intergenic
TTTCCGTTCTGGAGGTTGCG+CGG 0.616901 4_1:+41252284 Msa0547810:CDS
ACACTTCTGCTAGTAGCTTG+TGG 0.618863 4_1:+41252751 Msa0547810:CDS
CGACGATAAAGAAGGAAGAA+CGG 0.620250 4_1:-41252052 None:intergenic
AAACTTAAGAAAACTAGTGG+AGG 0.638676 4_1:+41252570 Msa0547810:CDS
CAACACAAGATAGAATGCTA+GGG 0.644647 4_1:+41251758 None:intergenic
TGTTTAGTACGAACGCACCA+TGG 0.650389 4_1:+41252360 Msa0547810:CDS
ACTCAAAAGGAAGATGAGCA+GGG 0.674433 4_1:+41252411 Msa0547810:CDS
GGATCCCCAACACTGAACGA+CGG 0.688356 4_1:+41251919 Msa0547810:CDS
ATGCTAGGGACTGAGTTCTG+TGG 0.689203 4_1:+41251772 Msa0547810:CDS
ACTAGCACTGCAACCCATAG+CGG 0.719332 4_1:-41252127 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGCTTTTGTTGATAATTTA+AGG + chr4_1:41252481-41252500 Msa0547810:CDS 20.0%
!!! AGCTTTTGTTGATAATTTAA+GGG + chr4_1:41252482-41252501 Msa0547810:CDS 20.0%
!!! AAGCTTTTGTTGATAATTTA+AGG + chr4_1:41252481-41252500 Msa0547810:CDS 20.0%
!!! AGCTTTTGTTGATAATTTAA+GGG + chr4_1:41252482-41252501 Msa0547810:CDS 20.0%
! AATCAGAAGAACAGAAAATT+TGG + chr4_1:41251801-41251820 Msa0547810:CDS 25.0%
! ATCAGAAGAACAGAAAATTT+GGG + chr4_1:41251802-41251821 Msa0547810:CDS 25.0%
! AAGTATACTTCTGTTCTTTA+AGG - chr4_1:41252331-41252350 None:intergenic 25.0%
! AAGAAACTTAAGAAAACTAG+TGG + chr4_1:41252567-41252586 Msa0547810:CDS 25.0%
!! AGAGTTTTTATGATAAGCTT+TGG + chr4_1:41252822-41252841 Msa0547810:intron 25.0%
! NNNNTGAAGATGCAAATGTT+TGG + chr4_1:41252989-41253008 Msa0547810:intron 25.0%
! NNNTGAAGATGCAAATGTTT+GGG + chr4_1:41252990-41253009 Msa0547810:intron 25.0%
! AATCAGAAGAACAGAAAATT+TGG + chr4_1:41251801-41251820 Msa0547810:CDS 25.0%
! ATCAGAAGAACAGAAAATTT+GGG + chr4_1:41251802-41251821 Msa0547810:CDS 25.0%
! AAGTATACTTCTGTTCTTTA+AGG - chr4_1:41252331-41252350 None:intergenic 25.0%
! AAGAAACTTAAGAAAACTAG+TGG + chr4_1:41252567-41252586 Msa0547810:CDS 25.0%
!! AGAGTTTTTATGATAAGCTT+TGG + chr4_1:41252822-41252841 Msa0547810:intron 25.0%
! NNNNTGAAGATGCAAATGTT+TGG + chr4_1:41252989-41253008 Msa0547810:intron 25.0%
! NNNTGAAGATGCAAATGTTT+GGG + chr4_1:41252990-41253009 Msa0547810:intron 25.0%
! TCCTTTGTTGGCAATATTTT+GGG - chr4_1:41252516-41252535 None:intergenic 30.0%
! TTCCTTTGTTGGCAATATTT+TGG - chr4_1:41252517-41252536 None:intergenic 30.0%
AACCTAAGTATTTCCTTTGT+TGG - chr4_1:41252528-41252547 None:intergenic 30.0%
AAACTTAAGAAAACTAGTGG+AGG + chr4_1:41252570-41252589 Msa0547810:CDS 30.0%
TCACCATTGAATTTCAAAAC+TGG + chr4_1:41252609-41252628 Msa0547810:CDS 30.0%
!!! ACACCAGTTTTGAAATTCAA+TGG - chr4_1:41252615-41252634 None:intergenic 30.0%
GCAAAAAAGAGGCTAAAAAA+AGG + chr4_1:41252795-41252814 Msa0547810:CDS 30.0%
TCAAATGCAATAGTTGCTTA+TGG + chr4_1:41252853-41252872 Msa0547810:intron 30.0%
CAAATGCAATAGTTGCTTAT+GGG + chr4_1:41252854-41252873 Msa0547810:intron 30.0%
TAATTATCCACCAAAGTCTT+TGG + chr4_1:41253026-41253045 Msa0547810:CDS 30.0%
TCAGGAAGTTCATAATTGTT+AGG - chr4_1:41253099-41253118 None:intergenic 30.0%
! TCCTTTGTTGGCAATATTTT+GGG - chr4_1:41252516-41252535 None:intergenic 30.0%
! TTCCTTTGTTGGCAATATTT+TGG - chr4_1:41252517-41252536 None:intergenic 30.0%
AACCTAAGTATTTCCTTTGT+TGG - chr4_1:41252528-41252547 None:intergenic 30.0%
AAACTTAAGAAAACTAGTGG+AGG + chr4_1:41252570-41252589 Msa0547810:CDS 30.0%
TCACCATTGAATTTCAAAAC+TGG + chr4_1:41252609-41252628 Msa0547810:CDS 30.0%
!!! ACACCAGTTTTGAAATTCAA+TGG - chr4_1:41252615-41252634 None:intergenic 30.0%
GCAAAAAAGAGGCTAAAAAA+AGG + chr4_1:41252795-41252814 Msa0547810:CDS 30.0%
TCAAATGCAATAGTTGCTTA+TGG + chr4_1:41252853-41252872 Msa0547810:intron 30.0%
CAAATGCAATAGTTGCTTAT+GGG + chr4_1:41252854-41252873 Msa0547810:intron 30.0%
TAATTATCCACCAAAGTCTT+TGG + chr4_1:41253026-41253045 Msa0547810:CDS 30.0%
TCAGGAAGTTCATAATTGTT+AGG - chr4_1:41253099-41253118 None:intergenic 30.0%
GCATTGCAAAACTTCTATCA+AGG + chr4_1:41251974-41251993 Msa0547810:CDS 35.0%
AAGAACATCAATTTCGGAAG+GGG - chr4_1:41252010-41252029 None:intergenic 35.0%
CAAGAACATCAATTTCGGAA+GGG - chr4_1:41252011-41252030 None:intergenic 35.0%
ACAAGAACATCAATTTCGGA+AGG - chr4_1:41252012-41252031 None:intergenic 35.0%
GACGACAAGAACATCAATTT+CGG - chr4_1:41252016-41252035 None:intergenic 35.0%
! GAGAAACAAGTTAGCACTTT+TGG + chr4_1:41252191-41252210 Msa0547810:CDS 35.0%
TCATTGCCAGTATACCAATT+TGG - chr4_1:41252237-41252256 None:intergenic 35.0%
!!! AAAGCTTTTGTTGCTGCTTT+TGG - chr4_1:41252468-41252487 None:intergenic 35.0%
ACCCAAAATATTGCCAACAA+AGG + chr4_1:41252512-41252531 Msa0547810:CDS 35.0%
TGCCAACAAAGGAAATACTT+AGG + chr4_1:41252523-41252542 Msa0547810:CDS 35.0%
AAAGCAGTGATTGATGGAAT+TGG + chr4_1:41252663-41252682 Msa0547810:CDS 35.0%
! TTTATGATAAGCTTTGGTGC+TGG + chr4_1:41252828-41252847 Msa0547810:intron 35.0%
AAAGGATTGACCAAAGACTT+TGG - chr4_1:41253039-41253058 None:intergenic 35.0%
AATCCTTTCATGGAGAAGTA+TGG + chr4_1:41253051-41253070 Msa0547810:CDS 35.0%
! TTTCATGGAGAAGTATGGTT+GGG + chr4_1:41253056-41253075 Msa0547810:CDS 35.0%
GCATTGCAAAACTTCTATCA+AGG + chr4_1:41251974-41251993 Msa0547810:CDS 35.0%
AAGAACATCAATTTCGGAAG+GGG - chr4_1:41252010-41252029 None:intergenic 35.0%
CAAGAACATCAATTTCGGAA+GGG - chr4_1:41252011-41252030 None:intergenic 35.0%
ACAAGAACATCAATTTCGGA+AGG - chr4_1:41252012-41252031 None:intergenic 35.0%
GACGACAAGAACATCAATTT+CGG - chr4_1:41252016-41252035 None:intergenic 35.0%
! GAGAAACAAGTTAGCACTTT+TGG + chr4_1:41252191-41252210 Msa0547810:CDS 35.0%
TCATTGCCAGTATACCAATT+TGG - chr4_1:41252237-41252256 None:intergenic 35.0%
!!! AAAGCTTTTGTTGCTGCTTT+TGG - chr4_1:41252468-41252487 None:intergenic 35.0%
ACCCAAAATATTGCCAACAA+AGG + chr4_1:41252512-41252531 Msa0547810:CDS 35.0%
TGCCAACAAAGGAAATACTT+AGG + chr4_1:41252523-41252542 Msa0547810:CDS 35.0%
AAAGCAGTGATTGATGGAAT+TGG + chr4_1:41252663-41252682 Msa0547810:CDS 35.0%
! TTTATGATAAGCTTTGGTGC+TGG + chr4_1:41252828-41252847 Msa0547810:intron 35.0%
AAAGGATTGACCAAAGACTT+TGG - chr4_1:41253039-41253058 None:intergenic 35.0%
AATCCTTTCATGGAGAAGTA+TGG + chr4_1:41253051-41253070 Msa0547810:CDS 35.0%
! TTTCATGGAGAAGTATGGTT+GGG + chr4_1:41253056-41253075 Msa0547810:CDS 35.0%
! CACAACTTACAATGGCTTTG+AGG - chr4_1:41251849-41251868 None:intergenic 40.0%
CTCAAAGCCATTGTAAGTTG+TGG + chr4_1:41251847-41251866 Msa0547810:CDS 40.0%
CGACGATAAAGAAGGAAGAA+CGG - chr4_1:41252055-41252074 None:intergenic 40.0%
ATGATTCGCGACGATAAAGA+AGG - chr4_1:41252063-41252082 None:intergenic 40.0%
CTCTGTCCAAATTGGTATAC+TGG + chr4_1:41252228-41252247 Msa0547810:CDS 40.0%
! TTACACTTGCTGCACTCAAA+AGG + chr4_1:41252398-41252417 Msa0547810:CDS 40.0%
ACTCAAAAGGAAGATGAGCA+GGG + chr4_1:41252411-41252430 Msa0547810:CDS 40.0%
!! GATCATTTTTGTCTCCACAC+AGG + chr4_1:41252636-41252655 Msa0547810:CDS 40.0%
AATATGATCTTGAGCCAGCA+AGG + chr4_1:41252706-41252725 Msa0547810:CDS 40.0%
! AGGATGACACTACATCGTTT+TGG + chr4_1:41252726-41252745 Msa0547810:CDS 40.0%
! AGTAGCTTGTGGTATGTGTT+AGG + chr4_1:41252762-41252781 Msa0547810:CDS 40.0%
! GTAGCTTGTGGTATGTGTTA+GGG + chr4_1:41252763-41252782 Msa0547810:CDS 40.0%
GGTACATGGAAGCAAAAAAG+AGG + chr4_1:41252784-41252803 Msa0547810:CDS 40.0%
GTCTTTGGTCAATCCTTTCA+TGG + chr4_1:41253041-41253060 Msa0547810:CDS 40.0%
CAACCATACTTCTCCATGAA+AGG - chr4_1:41253057-41253076 None:intergenic 40.0%
! CTTTCATGGAGAAGTATGGT+TGG + chr4_1:41253055-41253074 Msa0547810:CDS 40.0%
! CACAACTTACAATGGCTTTG+AGG - chr4_1:41251849-41251868 None:intergenic 40.0%
CTCAAAGCCATTGTAAGTTG+TGG + chr4_1:41251847-41251866 Msa0547810:CDS 40.0%
CGACGATAAAGAAGGAAGAA+CGG - chr4_1:41252055-41252074 None:intergenic 40.0%
ATGATTCGCGACGATAAAGA+AGG - chr4_1:41252063-41252082 None:intergenic 40.0%
CTCTGTCCAAATTGGTATAC+TGG + chr4_1:41252228-41252247 Msa0547810:CDS 40.0%
! TTACACTTGCTGCACTCAAA+AGG + chr4_1:41252398-41252417 Msa0547810:CDS 40.0%
ACTCAAAAGGAAGATGAGCA+GGG + chr4_1:41252411-41252430 Msa0547810:CDS 40.0%
!! GATCATTTTTGTCTCCACAC+AGG + chr4_1:41252636-41252655 Msa0547810:CDS 40.0%
AATATGATCTTGAGCCAGCA+AGG + chr4_1:41252706-41252725 Msa0547810:CDS 40.0%
! AGGATGACACTACATCGTTT+TGG + chr4_1:41252726-41252745 Msa0547810:CDS 40.0%
! AGTAGCTTGTGGTATGTGTT+AGG + chr4_1:41252762-41252781 Msa0547810:CDS 40.0%
! GTAGCTTGTGGTATGTGTTA+GGG + chr4_1:41252763-41252782 Msa0547810:CDS 40.0%
GGTACATGGAAGCAAAAAAG+AGG + chr4_1:41252784-41252803 Msa0547810:CDS 40.0%
GTCTTTGGTCAATCCTTTCA+TGG + chr4_1:41253041-41253060 Msa0547810:CDS 40.0%
CAACCATACTTCTCCATGAA+AGG - chr4_1:41253057-41253076 None:intergenic 40.0%
! CTTTCATGGAGAAGTATGGT+TGG + chr4_1:41253055-41253074 Msa0547810:CDS 40.0%
GCCATTGTAAGTTGTGGCAT+TGG + chr4_1:41251853-41251872 Msa0547810:CDS 45.0%
GCCAATGCCACAACTTACAA+TGG - chr4_1:41251857-41251876 None:intergenic 45.0%
GCCTTCAAAGACGTTTCTTG+GGG - chr4_1:41251893-41251912 None:intergenic 45.0%
GGCCTTCAAAGACGTTTCTT+GGG - chr4_1:41251894-41251913 None:intergenic 45.0%
AGTGTACAATCTCACCGCTA+TGG + chr4_1:41252113-41252132 Msa0547810:CDS 45.0%
GTGTACAATCTCACCGCTAT+GGG + chr4_1:41252114-41252133 Msa0547810:CDS 45.0%
CAGAGTCTCTCTGTCCAAAT+TGG + chr4_1:41252220-41252239 Msa0547810:CDS 45.0%
AACGGAAAAGACAGTTGGCT+AGG - chr4_1:41252272-41252291 None:intergenic 45.0%
TCCAGAACGGAAAAGACAGT+TGG - chr4_1:41252277-41252296 None:intergenic 45.0%
! AACTGTCTTTTCCGTTCTGG+AGG + chr4_1:41252276-41252295 Msa0547810:CDS 45.0%
TGTTTAGTACGAACGCACCA+TGG + chr4_1:41252360-41252379 Msa0547810:CDS 45.0%
GCAAGTGTAAGAGTCATCTC+TGG - chr4_1:41252388-41252407 None:intergenic 45.0%
CACTCAAAAGGAAGATGAGC+AGG + chr4_1:41252410-41252429 Msa0547810:CDS 45.0%
AAAAGGAAGATGAGCAGGGT+AGG + chr4_1:41252415-41252434 Msa0547810:CDS 45.0%
!! GTAGGCTTGGTGTTCACTTA+GGG + chr4_1:41252433-41252452 Msa0547810:CDS 45.0%
! CATTTTTGTCTCCACACAGG+AGG + chr4_1:41252639-41252658 Msa0547810:CDS 45.0%
GGAGGAAAAGCAGTGATTGA+TGG + chr4_1:41252657-41252676 Msa0547810:CDS 45.0%
ACACTTCTGCTAGTAGCTTG+TGG + chr4_1:41252751-41252770 Msa0547810:CDS 45.0%
GTGGTATGTGTTAGGGTACA+TGG + chr4_1:41252770-41252789 Msa0547810:CDS 45.0%
GGATTGACCAAAGACTTTGG+TGG - chr4_1:41253036-41253055 None:intergenic 45.0%
TGGTTGGGTCAATGAAGTTG+AGG + chr4_1:41253071-41253090 Msa0547810:CDS 45.0%
GCCATTGTAAGTTGTGGCAT+TGG + chr4_1:41251853-41251872 Msa0547810:CDS 45.0%
GCCAATGCCACAACTTACAA+TGG - chr4_1:41251857-41251876 None:intergenic 45.0%
GCCTTCAAAGACGTTTCTTG+GGG - chr4_1:41251893-41251912 None:intergenic 45.0%
GGCCTTCAAAGACGTTTCTT+GGG - chr4_1:41251894-41251913 None:intergenic 45.0%
AGTGTACAATCTCACCGCTA+TGG + chr4_1:41252113-41252132 Msa0547810:CDS 45.0%
GTGTACAATCTCACCGCTAT+GGG + chr4_1:41252114-41252133 Msa0547810:CDS 45.0%
CAGAGTCTCTCTGTCCAAAT+TGG + chr4_1:41252220-41252239 Msa0547810:CDS 45.0%
AACGGAAAAGACAGTTGGCT+AGG - chr4_1:41252272-41252291 None:intergenic 45.0%
TCCAGAACGGAAAAGACAGT+TGG - chr4_1:41252277-41252296 None:intergenic 45.0%
! AACTGTCTTTTCCGTTCTGG+AGG + chr4_1:41252276-41252295 Msa0547810:CDS 45.0%
TGTTTAGTACGAACGCACCA+TGG + chr4_1:41252360-41252379 Msa0547810:CDS 45.0%
GCAAGTGTAAGAGTCATCTC+TGG - chr4_1:41252388-41252407 None:intergenic 45.0%
CACTCAAAAGGAAGATGAGC+AGG + chr4_1:41252410-41252429 Msa0547810:CDS 45.0%
AAAAGGAAGATGAGCAGGGT+AGG + chr4_1:41252415-41252434 Msa0547810:CDS 45.0%
!! GTAGGCTTGGTGTTCACTTA+GGG + chr4_1:41252433-41252452 Msa0547810:CDS 45.0%
! CATTTTTGTCTCCACACAGG+AGG + chr4_1:41252639-41252658 Msa0547810:CDS 45.0%
GGAGGAAAAGCAGTGATTGA+TGG + chr4_1:41252657-41252676 Msa0547810:CDS 45.0%
ACACTTCTGCTAGTAGCTTG+TGG + chr4_1:41252751-41252770 Msa0547810:CDS 45.0%
GTGGTATGTGTTAGGGTACA+TGG + chr4_1:41252770-41252789 Msa0547810:CDS 45.0%
GGATTGACCAAAGACTTTGG+TGG - chr4_1:41253036-41253055 None:intergenic 45.0%
TGGTTGGGTCAATGAAGTTG+AGG + chr4_1:41253071-41253090 Msa0547810:CDS 45.0%
ATGCTAGGGACTGAGTTCTG+TGG + chr4_1:41251772-41251791 Msa0547810:CDS 50.0%
GCCCCAAGAAACGTCTTTGA+AGG + chr4_1:41251889-41251908 Msa0547810:CDS 50.0%
CGGCCTTCAAAGACGTTTCT+TGG - chr4_1:41251895-41251914 None:intergenic 50.0%
AGATCCCGTCGTTCAGTGTT+GGG - chr4_1:41251927-41251946 None:intergenic 50.0%
ACTAGCACTGCAACCCATAG+CGG - chr4_1:41252130-41252149 None:intergenic 50.0%
! GCCAACTGTCTTTTCCGTTC+TGG + chr4_1:41252273-41252292 Msa0547810:CDS 50.0%
!! GGTAGGCTTGGTGTTCACTT+AGG + chr4_1:41252432-41252451 Msa0547810:CDS 50.0%
!! TCACTGCTTTTCCTCCTGTG+TGG - chr4_1:41252653-41252672 None:intergenic 50.0%
CGATGTAGTGTCATCCTTGC+TGG - chr4_1:41252723-41252742 None:intergenic 50.0%
ATGCTAGGGACTGAGTTCTG+TGG + chr4_1:41251772-41251791 Msa0547810:CDS 50.0%
GCCCCAAGAAACGTCTTTGA+AGG + chr4_1:41251889-41251908 Msa0547810:CDS 50.0%
CGGCCTTCAAAGACGTTTCT+TGG - chr4_1:41251895-41251914 None:intergenic 50.0%
AGATCCCGTCGTTCAGTGTT+GGG - chr4_1:41251927-41251946 None:intergenic 50.0%
ACTAGCACTGCAACCCATAG+CGG - chr4_1:41252130-41252149 None:intergenic 50.0%
! GCCAACTGTCTTTTCCGTTC+TGG + chr4_1:41252273-41252292 Msa0547810:CDS 50.0%
!! GGTAGGCTTGGTGTTCACTT+AGG + chr4_1:41252432-41252451 Msa0547810:CDS 50.0%
!! TCACTGCTTTTCCTCCTGTG+TGG - chr4_1:41252653-41252672 None:intergenic 50.0%
CGATGTAGTGTCATCCTTGC+TGG - chr4_1:41252723-41252742 None:intergenic 50.0%
! AACGTCTTTGAAGGCCGCGA+AGG + chr4_1:41251898-41251917 Msa0547810:CDS 55.0%
! TCAGTGTTGGGGATCCTTCG+CGG - chr4_1:41251915-41251934 None:intergenic 55.0%
GGATCCCCAACACTGAACGA+CGG + chr4_1:41251919-41251938 Msa0547810:CDS 55.0%
GATCCCCAACACTGAACGAC+GGG + chr4_1:41251920-41251939 Msa0547810:CDS 55.0%
GATCCCGTCGTTCAGTGTTG+GGG - chr4_1:41251926-41251945 None:intergenic 55.0%
GAGATCCCGTCGTTCAGTGT+TGG - chr4_1:41251928-41251947 None:intergenic 55.0%
!! TTTCCGTTCTGGAGGTTGCG+CGG + chr4_1:41252284-41252303 Msa0547810:CDS 55.0%
AAGAGTCATCTCTGGCGCCA+TGG - chr4_1:41252380-41252399 None:intergenic 55.0%
GAAGATGAGCAGGGTAGGCT+TGG + chr4_1:41252420-41252439 Msa0547810:CDS 55.0%
! AACGTCTTTGAAGGCCGCGA+AGG + chr4_1:41251898-41251917 Msa0547810:CDS 55.0%
! TCAGTGTTGGGGATCCTTCG+CGG - chr4_1:41251915-41251934 None:intergenic 55.0%
GGATCCCCAACACTGAACGA+CGG + chr4_1:41251919-41251938 Msa0547810:CDS 55.0%
GATCCCCAACACTGAACGAC+GGG + chr4_1:41251920-41251939 Msa0547810:CDS 55.0%
GATCCCGTCGTTCAGTGTTG+GGG - chr4_1:41251926-41251945 None:intergenic 55.0%
GAGATCCCGTCGTTCAGTGT+TGG - chr4_1:41251928-41251947 None:intergenic 55.0%
!! TTTCCGTTCTGGAGGTTGCG+CGG + chr4_1:41252284-41252303 Msa0547810:CDS 55.0%
AAGAGTCATCTCTGGCGCCA+TGG - chr4_1:41252380-41252399 None:intergenic 55.0%
GAAGATGAGCAGGGTAGGCT+TGG + chr4_1:41252420-41252439 Msa0547810:CDS 55.0%
GAACCGCGCAACCTCCAGAA+CGG - chr4_1:41252290-41252309 None:intergenic 60.0%
GAACCGCGCAACCTCCAGAA+CGG - chr4_1:41252290-41252309 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 41251772 41253131 41251772 ID=Msa0547810;Name=Msa0547810
chr4_1 mRNA 41251772 41253131 41251772 ID=Msa0547810-mRNA-1;Parent=Msa0547810;Name=Msa0547810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|392
chr4_1 exon 41251772 41252816 41251772 ID=Msa0547810-mRNA-1:exon:10579;Parent=Msa0547810-mRNA-1
chr4_1 exon 41252998 41253131 41252998 ID=Msa0547810-mRNA-1:exon:10580;Parent=Msa0547810-mRNA-1
chr4_1 CDS 41251772 41252816 41251772 ID=Msa0547810-mRNA-1:cds;Parent=Msa0547810-mRNA-1
chr4_1 CDS 41252998 41253131 41252998 ID=Msa0547810-mRNA-1:cds;Parent=Msa0547810-mRNA-1
Gene Sequence

>Msa0547810

ATGCTAGGGACTGAGTTCTGTGGCAAAGTAATCAGAAGAACAGAAAATTTGGGTATAGATGAATACAAATTTCTCCTCAAAGCCATTGTAAGTTGTGGCATTGGCGAACAAACTTACGCCCCAAGAAACGTCTTTGAAGGCCGCGAAGGATCCCCAACACTGAACGACGGGATCTCAGAGATGCAAGAATTTTTTGACGACAGCATTGCAAAACTTCTATCAAGGTCAGCGATTTCCCCTTCCGAAATTGATGTTCTTGTCGTCAACATCTCAATGCTCTCCGTTCTTCCTTCTTTATCGTCGCGAATCATTAATCGTTACAAAATGAGACATGACATAAAAGTGTACAATCTCACCGCTATGGGTTGCAGTGCTAGTCTTATATCATTAGATATTGTTAAAAACATTTTCAAATCACAGAGAAACAAGTTAGCACTTTTGGTCACATCAGAGTCTCTCTGTCCAAATTGGTATACTGGCAATGATAAATCAATGATCCTAGCCAACTGTCTTTTCCGTTCTGGAGGTTGCGCGGTTCTTTTGACAAACAAAAGATCCTTAAAGAACAGAAGTATACTTAAATTGAAGTGTTTAGTACGAACGCACCATGGCGCCAGAGATGACTCTTACACTTGCTGCACTCAAAAGGAAGATGAGCAGGGTAGGCTTGGTGTTCACTTAGGGAAAACTCTTCCAAAAGCAGCAACAAAAGCTTTTGTTGATAATTTAAGGGTAATTTCACCCAAAATATTGCCAACAAAGGAAATACTTAGGTTTCTTGTTGTGACACTTTTTAAGAAACTTAAGAAAACTAGTGGAGGAACAATTACTAAAAAATCACCATTGAATTTCAAAACTGGTGTTGATCATTTTTGTCTCCACACAGGAGGAAAAGCAGTGATTGATGGAATTGGAATGAGTTTAGATCTAAGTGAATATGATCTTGAGCCAGCAAGGATGACACTACATCGTTTTGGTAACACTTCTGCTAGTAGCTTGTGGTATGTGTTAGGGTACATGGAAGCAAAAAAGAGGCTAAAAAAAGATGCAAATGTTTGGGAAGATTGTATTGATAATTATCCACCAAAGTCTTTGGTCAATCCTTTCATGGAGAAGTATGGTTGGGTCAATGAAGTTGAGGATCCTAACAATTATGAACTTCCTGATTTTCTTAAGTGA

Protein sequence

>Msa0547810

MLGTEFCGKVIRRTENLGIDEYKFLLKAIVSCGIGEQTYAPRNVFEGREGSPTLNDGISEMQEFFDDSIAKLLSRSAISPSEIDVLVVNISMLSVLPSLSSRIINRYKMRHDIKVYNLTAMGCSASLISLDIVKNIFKSQRNKLALLVTSESLCPNWYTGNDKSMILANCLFRSGGCAVLLTNKRSLKNRSILKLKCLVRTHHGARDDSYTCCTQKEDEQGRLGVHLGKTLPKAATKAFVDNLRVISPKILPTKEILRFLVVTLFKKLKKTSGGTITKKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKDANVWEDCIDNYPPKSLVNPFMEKYGWVNEVEDPNNYELPDFLK*