AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0005190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005190 MtrunA17_Chr1g0151461 94.754 305 13 2 1 302 1 305 0.0 539
Msa0005190 MtrunA17_Chr4g0071301 44.037 109 40 4 105 213 134 221 7.84e-17 79.7
Msa0005190 MtrunA17_Chr2g0299081 37.321 209 88 7 105 300 115 293 4.86e-16 77.0
Msa0005190 MtrunA17_Chr4g0068031 62.500 48 18 0 181 228 27 74 5.27e-16 73.6
Msa0005190 MtrunA17_Chr7g0271861 69.444 36 11 0 184 219 22 57 6.47e-13 64.7
Msa0005190 MtrunA17_Chr5g0404131 57.692 52 19 1 172 220 177 228 3.26e-12 65.9
Msa0005190 MtrunA17_Chr8g0373231 63.158 38 14 0 183 220 124 161 7.63e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005190 AT5G56860.1 42.748 131 48 6 105 217 142 263 8.32e-19 86.3
Msa0005190 AT5G49300.1 66.667 45 15 0 180 224 32 76 5.40e-17 76.6
Msa0005190 AT4G26150.1 43.243 111 36 4 105 215 147 230 3.18e-16 78.6
Msa0005190 AT5G26930.1 66.667 42 14 0 180 221 22 63 8.43e-16 72.8
Msa0005190 AT3G06740.1 66.667 42 14 0 181 222 38 79 1.59e-14 70.1
Msa0005190 AT4G16141.1 68.293 41 13 0 181 221 34 74 3.08e-14 70.5
Msa0005190 AT3G16870.1 57.143 56 20 1 181 236 39 90 4.64e-14 69.7
Msa0005190 AT4G36620.1 58.333 48 20 0 180 227 71 118 2.78e-12 65.1
Msa0005190 AT2G18380.1 64.286 42 14 1 184 224 92 133 5.11e-12 64.3
Msa0005190 AT5G25830.1 50.000 52 26 0 168 219 203 254 2.97e-11 63.5
Msa0005190 AT3G50870.1 58.696 46 18 1 183 227 151 196 4.71e-11 62.8

Find 72 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGTTTGGTCTCATTAT+TGG 0.223553 1_1:-7640424 None:intergenic
CCCACCTTCTTTAACTTACT+TGG 0.224103 1_1:+7639453 Msa0005190:CDS
CAGGAGAAATATTGAAGAAT+TGG 0.252897 1_1:-7639416 None:intergenic
CAATATTTCTCCTGTTAATC+AGG 0.271245 1_1:+7639425 Msa0005190:CDS
TGACCTTGTAGTAAGGAATT+AGG 0.293931 1_1:-7639390 None:intergenic
ATGATGAAACCTAGTAATTA+TGG 0.301261 1_1:+7640490 Msa0005190:CDS
TTGTTACCGCTGTTACTACT+AGG 0.336848 1_1:-7640556 None:intergenic
TGTTACTACTAGGGCTTGTT+TGG 0.337618 1_1:-7640546 None:intergenic
CACTCCTCCATAGTGGGGTA+TGG 0.338618 1_1:-7640612 None:intergenic
GTCCAAGAAATCAAAATATA+AGG 0.340331 1_1:+7640518 Msa0005190:CDS
TTTGCAATGCTTGTGGAATC+AGG 0.357272 1_1:+7641236 Msa0005190:CDS
TTTAACTTACTTGGAGACTT+TGG 0.370727 1_1:+7639462 Msa0005190:CDS
TCATCATAATCATAATCTAA+TGG 0.373491 1_1:-7641448 None:intergenic
GTGGGAGTGTCCTGATTAAC+AGG 0.382047 1_1:-7639435 None:intergenic
CACAAATTTATCATCATCCT+TGG 0.395360 1_1:+7640291 Msa0005190:CDS
AGCAACGGCGGCACGACTTC+TGG 0.401059 1_1:+7641474 Msa0005190:CDS
TAATTACTAGGTTTCATCAT+TGG 0.409747 1_1:-7640487 None:intergenic
CCTGGTGGATTCAGAGAAAC+AGG 0.414838 1_1:-7639366 None:intergenic
GTGGCTGCAATATTGTTGTT+TGG 0.421269 1_1:-7640436 None:intergenic
GGCTGAAGCTGCCAATGGTT+TGG 0.422143 1_1:+7641282 Msa0005190:CDS
TTCATCAAGTGAGTCAGTTA+TGG 0.431248 1_1:+7640246 Msa0005190:CDS
TTGATGAATTATAGAGTTGT+TGG 0.441916 1_1:-7640231 None:intergenic
CGAATTACCTTTGGACCCAT+AGG 0.444966 1_1:-7640637 None:intergenic
GGACTAGTACCATAATTACT+AGG 0.449247 1_1:-7640499 None:intergenic
ACTATGGAGGAGTGGCCCTA+TGG 0.450797 1_1:+7640621 Msa0005190:CDS
CTTCTGGTGGATATATCTTC+TGG 0.451597 1_1:+7641490 Msa0005190:CDS
ACAGCGGTAACAACACCGTT+AGG 0.456940 1_1:+7640566 Msa0005190:CDS
CTATGGAGGAGTGGCCCTAT+GGG 0.464867 1_1:+7640622 Msa0005190:CDS
TTTATCATCATCCTTGGAGC+TGG 0.479939 1_1:+7640297 Msa0005190:CDS
CTTGATAGCTTTGTCAGTAG+TGG 0.482210 1_1:-7640455 None:intergenic
AGAAAATCATGATCATCATC+AGG 0.482702 1_1:+7639485 Msa0005190:CDS
ACTCCTCCATAGTGGGGTAT+GGG 0.482841 1_1:-7640611 None:intergenic
GTACATCCCATACCCCACTA+TGG 0.488777 1_1:+7640605 Msa0005190:CDS
TTCTTAGTCTTGAATTGTGT+AGG 0.495944 1_1:-7641343 None:intergenic
TCCAAGTAAGTTAAAGAAGG+TGG 0.507265 1_1:-7639454 None:intergenic
GCTGCTATCTTCCAGCTCCA+AGG 0.513483 1_1:-7640308 None:intergenic
TGGTCTCATTATTGGAGTTG+TGG 0.515285 1_1:-7640416 None:intergenic
AAGCTGGCATTTCATCATGA+TGG 0.517666 1_1:+7640190 Msa0005190:CDS
TCAGGCAGAGAAAGGCAAGA+AGG 0.520139 1_1:+7641254 Msa0005190:CDS
CAGGCAGAGAAAGGCAAGAA+GGG 0.526577 1_1:+7641255 Msa0005190:CDS
GAATTACCTTTGGACCCATA+GGG 0.528192 1_1:-7640636 None:intergenic
TGAGTCACGGGTCTGAGAGA+TGG 0.533532 1_1:+7640338 Msa0005190:CDS
ATTACTTTAGGATCATAAGC+TGG 0.534318 1_1:+7640174 Msa0005190:intron
AGGGGATGTAGCCAAACCAT+TGG 0.539225 1_1:-7641293 None:intergenic
CCTGTTTCTCTGAATCCACC+AGG 0.540643 1_1:+7639366 Msa0005190:CDS
CAGTCACTTTGCAATGCTTG+TGG 0.543553 1_1:+7641229 Msa0005190:intron
CAGCGGTAACAACACCGTTA+GGG 0.546032 1_1:+7640567 Msa0005190:CDS
ACCATTGGCAGCTTCAGCCA+TGG 0.551217 1_1:-7641278 None:intergenic
TTGTGGAATCAGGCAGAGAA+AGG 0.551715 1_1:+7641246 Msa0005190:CDS
GTCTCCAAGTAAGTTAAAGA+AGG 0.552424 1_1:-7639457 None:intergenic
TAGGGCCACTCCTCCATAGT+GGG 0.558056 1_1:-7640618 None:intergenic
TGTTACCGCTGTTACTACTA+GGG 0.563428 1_1:-7640555 None:intergenic
ATAGGGCCACTCCTCCATAG+TGG 0.566452 1_1:-7640619 None:intergenic
ATTCAGAGAAACAGGAGTCA+TGG 0.574562 1_1:-7639358 None:intergenic
CCAAGTAAGTTAAAGAAGGT+GGG 0.576247 1_1:-7639453 None:intergenic
AGAAGTAGTTGAAGTTGTAG+AGG 0.579757 1_1:-7641383 None:intergenic
GAGAAAGGCAAGAAGGGCCA+TGG 0.585866 1_1:+7641261 Msa0005190:CDS
GAGTGGCCCTATGGGTCCAA+AGG 0.590272 1_1:+7640630 Msa0005190:CDS
GATGGATGTCTTCAAAGATG+AGG 0.603732 1_1:+7640356 Msa0005190:CDS
GGTCCTAATTCCTTACTACA+AGG 0.608365 1_1:+7639387 Msa0005190:CDS
TGATTATGATGAAGCAGCAA+CGG 0.614524 1_1:+7641459 Msa0005190:CDS
GCCATGGCTGAAGCTGCCAA+TGG 0.619219 1_1:+7641277 Msa0005190:CDS
AACGGCGGCACGACTTCTGG+TGG 0.640817 1_1:+7641477 Msa0005190:CDS
ACAATCAGAACAAACCCTAA+CGG 0.645452 1_1:-7640581 None:intergenic
AGTAAGGAATTAGGACCTGG+TGG 0.650702 1_1:-7639381 None:intergenic
ACAATTCAAGACTAAGAACA+AGG 0.668290 1_1:+7641348 Msa0005190:CDS
CATACCCCACTATGGAGGAG+TGG 0.671274 1_1:+7640613 Msa0005190:CDS
TGTAGTAAGGAATTAGGACC+TGG 0.677396 1_1:-7639384 None:intergenic
CATCCCATACCCCACTATGG+AGG 0.682705 1_1:+7640608 Msa0005190:CDS
TTATGATGAAGCAGCAACGG+CGG 0.694941 1_1:+7641462 Msa0005190:CDS
AGGGCCACTCCTCCATAGTG+GGG 0.711722 1_1:-7640617 None:intergenic
ACAAGCCCTAGTAGTAACAG+CGG 0.724459 1_1:+7640550 Msa0005190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATATATTATTAAAACA+TGG - chr1_1:7639839-7639858 None:intergenic 10.0%
!! CTTTATATAATGATATAATT+TGG + chr1_1:7639888-7639907 Msa0005190:intron 10.0%
!!! ATTAATATATTTTTTTTGTG+GGG - chr1_1:7640786-7640805 None:intergenic 10.0%
!! ATTAATATTTATTGTTCATA+AGG + chr1_1:7640800-7640819 Msa0005190:intron 10.0%
!! TTAATATTTATTGTTCATAA+GGG + chr1_1:7640801-7640820 Msa0005190:intron 10.0%
!! TGATAAAATATTTGTATTAA+AGG - chr1_1:7640887-7640906 None:intergenic 10.0%
!! TAATTAAAAAGATAAAATAG+AGG - chr1_1:7640984-7641003 None:intergenic 10.0%
!! AATCAAATTAAGTTTAATTA+TGG - chr1_1:7641157-7641176 None:intergenic 10.0%
!! ATCTATATATTATTAAAACA+TGG - chr1_1:7639839-7639858 None:intergenic 10.0%
!! CTTTATATAATGATATAATT+TGG + chr1_1:7639888-7639907 Msa0005190:intron 10.0%
!!! ATTAATATATTTTTTTTGTG+GGG - chr1_1:7640786-7640805 None:intergenic 10.0%
!! ATTAATATTTATTGTTCATA+AGG + chr1_1:7640800-7640819 Msa0005190:intron 10.0%
!! TTAATATTTATTGTTCATAA+GGG + chr1_1:7640801-7640820 Msa0005190:intron 10.0%
!! TGATAAAATATTTGTATTAA+AGG - chr1_1:7640887-7640906 None:intergenic 10.0%
!! TAATTAAAAAGATAAAATAG+AGG - chr1_1:7640984-7641003 None:intergenic 10.0%
!! AATCAAATTAAGTTTAATTA+TGG - chr1_1:7641157-7641176 None:intergenic 10.0%
!!! ATCTTTAAAAAAAACAAAAG+GGG - chr1_1:7639715-7639734 None:intergenic 15.0%
!!! CATCTTTAAAAAAAACAAAA+GGG - chr1_1:7639716-7639735 None:intergenic 15.0%
!!! ACATCTTTAAAAAAAACAAA+AGG - chr1_1:7639717-7639736 None:intergenic 15.0%
!! AATAATAACATATACATCAA+AGG - chr1_1:7640069-7640088 None:intergenic 15.0%
!!! GATATTAATAATTTTTGAGA+TGG - chr1_1:7640761-7640780 None:intergenic 15.0%
!!! TGTTTTTGTAAGAATTTTTA+TGG - chr1_1:7640853-7640872 None:intergenic 15.0%
!!! ATCTTTAAAAAAAACAAAAG+GGG - chr1_1:7639715-7639734 None:intergenic 15.0%
!!! CATCTTTAAAAAAAACAAAA+GGG - chr1_1:7639716-7639735 None:intergenic 15.0%
!!! ACATCTTTAAAAAAAACAAA+AGG - chr1_1:7639717-7639736 None:intergenic 15.0%
!! AATAATAACATATACATCAA+AGG - chr1_1:7640069-7640088 None:intergenic 15.0%
!!! GATATTAATAATTTTTGAGA+TGG - chr1_1:7640761-7640780 None:intergenic 15.0%
!!! TGTTTTTGTAAGAATTTTTA+TGG - chr1_1:7640853-7640872 None:intergenic 15.0%
!! AAAGAGAAGTAAAAAACAAA+GGG - chr1_1:7639527-7639546 None:intergenic 20.0%
!! AAAAGAGAAGTAAAAAACAA+AGG - chr1_1:7639528-7639547 None:intergenic 20.0%
!! TAGATTAATAATCAGATCAT+AGG - chr1_1:7639914-7639933 None:intergenic 20.0%
!! AAAAAATTATAGAAGAGACA+AGG - chr1_1:7639959-7639978 None:intergenic 20.0%
!!! TACCTTATATTTTGATTTCT+TGG - chr1_1:7640523-7640542 None:intergenic 20.0%
!!! CGATAAATGATAAATTTTAG+TGG - chr1_1:7640727-7640746 None:intergenic 20.0%
!! ATTTGTATTAAAGGAAGTAA+AGG - chr1_1:7640878-7640897 None:intergenic 20.0%
!! TCATCATAATCATAATCTAA+TGG - chr1_1:7641451-7641470 None:intergenic 20.0%
!! AAAGAGAAGTAAAAAACAAA+GGG - chr1_1:7639527-7639546 None:intergenic 20.0%
!! AAAAGAGAAGTAAAAAACAA+AGG - chr1_1:7639528-7639547 None:intergenic 20.0%
!! TAGATTAATAATCAGATCAT+AGG - chr1_1:7639914-7639933 None:intergenic 20.0%
!! AAAAAATTATAGAAGAGACA+AGG - chr1_1:7639959-7639978 None:intergenic 20.0%
!!! TACCTTATATTTTGATTTCT+TGG - chr1_1:7640523-7640542 None:intergenic 20.0%
!!! CGATAAATGATAAATTTTAG+TGG - chr1_1:7640727-7640746 None:intergenic 20.0%
!! ATTTGTATTAAAGGAAGTAA+AGG - chr1_1:7640878-7640897 None:intergenic 20.0%
!! TCATCATAATCATAATCTAA+TGG - chr1_1:7641451-7641470 None:intergenic 20.0%
! TCAAAACAACACAATTACTA+TGG - chr1_1:7639769-7639788 None:intergenic 25.0%
!!! CTCTTTGATTTGATTACTTT+AGG + chr1_1:7640162-7640181 Msa0005190:intron 25.0%
! TTGATGAATTATAGAGTTGT+TGG - chr1_1:7640234-7640253 None:intergenic 25.0%
! TAATTACTAGGTTTCATCAT+TGG - chr1_1:7640490-7640509 None:intergenic 25.0%
! ATGATGAAACCTAGTAATTA+TGG + chr1_1:7640490-7640509 Msa0005190:CDS 25.0%
! GTCCAAGAAATCAAAATATA+AGG + chr1_1:7640518-7640537 Msa0005190:CDS 25.0%
! ATACGAAAGAATAGTGAATA+AGG - chr1_1:7640673-7640692 None:intergenic 25.0%
! ACTATTCTTTCGTATTAAAG+TGG + chr1_1:7640678-7640697 Msa0005190:intron 25.0%
! TAAAAAGATAAAATAGAGGC+AGG - chr1_1:7640980-7640999 None:intergenic 25.0%
! TAGTTAACATGAAAACATGT+TGG + chr1_1:7641204-7641223 Msa0005190:intron 25.0%
!!! TCTTAAGCACTTTAGTTTTA+GGG - chr1_1:7641315-7641334 None:intergenic 25.0%
!!! ATCTTAAGCACTTTAGTTTT+AGG - chr1_1:7641316-7641335 None:intergenic 25.0%
! TCAAAACAACACAATTACTA+TGG - chr1_1:7639769-7639788 None:intergenic 25.0%
!!! CTCTTTGATTTGATTACTTT+AGG + chr1_1:7640162-7640181 Msa0005190:intron 25.0%
! TTGATGAATTATAGAGTTGT+TGG - chr1_1:7640234-7640253 None:intergenic 25.0%
! TAATTACTAGGTTTCATCAT+TGG - chr1_1:7640490-7640509 None:intergenic 25.0%
! ATGATGAAACCTAGTAATTA+TGG + chr1_1:7640490-7640509 Msa0005190:CDS 25.0%
! GTCCAAGAAATCAAAATATA+AGG + chr1_1:7640518-7640537 Msa0005190:CDS 25.0%
! ATACGAAAGAATAGTGAATA+AGG - chr1_1:7640673-7640692 None:intergenic 25.0%
! ACTATTCTTTCGTATTAAAG+TGG + chr1_1:7640678-7640697 Msa0005190:intron 25.0%
! TAAAAAGATAAAATAGAGGC+AGG - chr1_1:7640980-7640999 None:intergenic 25.0%
! TAGTTAACATGAAAACATGT+TGG + chr1_1:7641204-7641223 Msa0005190:intron 25.0%
!!! TCTTAAGCACTTTAGTTTTA+GGG - chr1_1:7641315-7641334 None:intergenic 25.0%
!!! ATCTTAAGCACTTTAGTTTT+AGG - chr1_1:7641316-7641335 None:intergenic 25.0%
CAGGAGAAATATTGAAGAAT+TGG - chr1_1:7639419-7639438 None:intergenic 30.0%
CAATATTTCTCCTGTTAATC+AGG + chr1_1:7639425-7639444 Msa0005190:CDS 30.0%
! TTTAACTTACTTGGAGACTT+TGG + chr1_1:7639462-7639481 Msa0005190:CDS 30.0%
AGAAAATCATGATCATCATC+AGG + chr1_1:7639485-7639504 Msa0005190:CDS 30.0%
AAACAACACAATTACTATGG+TGG - chr1_1:7639766-7639785 None:intergenic 30.0%
!!! TTTTGAAACAAGAGAACGTT+TGG + chr1_1:7639783-7639802 Msa0005190:intron 30.0%
!! ATTACTTTAGGATCATAAGC+TGG + chr1_1:7640174-7640193 Msa0005190:intron 30.0%
CACAAATTTATCATCATCCT+TGG + chr1_1:7640291-7640310 Msa0005190:CDS 30.0%
!! TTGTTGTTTGGTCTCATTAT+TGG - chr1_1:7640427-7640446 None:intergenic 30.0%
AAAGAATAGTGAATAAGGCT+GGG - chr1_1:7640668-7640687 None:intergenic 30.0%
! TTTAGTGGATCATAACAACA+AGG - chr1_1:7640712-7640731 None:intergenic 30.0%
TTCATAAGGGATGTCAAATA+TGG + chr1_1:7640814-7640833 Msa0005190:intron 30.0%
!!! CTTAAGCACTTTAGTTTTAG+GGG - chr1_1:7641314-7641333 None:intergenic 30.0%
!! TTCTTAGTCTTGAATTGTGT+AGG - chr1_1:7641346-7641365 None:intergenic 30.0%
ACAATTCAAGACTAAGAACA+AGG + chr1_1:7641348-7641367 Msa0005190:CDS 30.0%
CAGGAGAAATATTGAAGAAT+TGG - chr1_1:7639419-7639438 None:intergenic 30.0%
CAATATTTCTCCTGTTAATC+AGG + chr1_1:7639425-7639444 Msa0005190:CDS 30.0%
! TTTAACTTACTTGGAGACTT+TGG + chr1_1:7639462-7639481 Msa0005190:CDS 30.0%
AGAAAATCATGATCATCATC+AGG + chr1_1:7639485-7639504 Msa0005190:CDS 30.0%
AAACAACACAATTACTATGG+TGG - chr1_1:7639766-7639785 None:intergenic 30.0%
!!! TTTTGAAACAAGAGAACGTT+TGG + chr1_1:7639783-7639802 Msa0005190:intron 30.0%
!! ATTACTTTAGGATCATAAGC+TGG + chr1_1:7640174-7640193 Msa0005190:intron 30.0%
CACAAATTTATCATCATCCT+TGG + chr1_1:7640291-7640310 Msa0005190:CDS 30.0%
!! TTGTTGTTTGGTCTCATTAT+TGG - chr1_1:7640427-7640446 None:intergenic 30.0%
AAAGAATAGTGAATAAGGCT+GGG - chr1_1:7640668-7640687 None:intergenic 30.0%
! TTTAGTGGATCATAACAACA+AGG - chr1_1:7640712-7640731 None:intergenic 30.0%
TTCATAAGGGATGTCAAATA+TGG + chr1_1:7640814-7640833 Msa0005190:intron 30.0%
!!! CTTAAGCACTTTAGTTTTAG+GGG - chr1_1:7641314-7641333 None:intergenic 30.0%
!! TTCTTAGTCTTGAATTGTGT+AGG - chr1_1:7641346-7641365 None:intergenic 30.0%
ACAATTCAAGACTAAGAACA+AGG + chr1_1:7641348-7641367 Msa0005190:CDS 30.0%
TGACCTTGTAGTAAGGAATT+AGG - chr1_1:7639393-7639412 None:intergenic 35.0%
!!! TTGGTTTTGACCTTGTAGTA+AGG - chr1_1:7639400-7639419 None:intergenic 35.0%
CCAAGTAAGTTAAAGAAGGT+GGG - chr1_1:7639456-7639475 None:intergenic 35.0%
TCCAAGTAAGTTAAAGAAGG+TGG - chr1_1:7639457-7639476 None:intergenic 35.0%
GTCTCCAAGTAAGTTAAAGA+AGG - chr1_1:7639460-7639479 None:intergenic 35.0%
TTCATCAAGTGAGTCAGTTA+TGG + chr1_1:7640246-7640265 Msa0005190:CDS 35.0%
! GGACTAGTACCATAATTACT+AGG - chr1_1:7640502-7640521 None:intergenic 35.0%
ACAATCAGAACAAACCCTAA+CGG - chr1_1:7640584-7640603 None:intergenic 35.0%
TGGGATTAACGAATTACCTT+TGG - chr1_1:7640649-7640668 None:intergenic 35.0%
GAAAGAATAGTGAATAAGGC+TGG - chr1_1:7640669-7640688 None:intergenic 35.0%
AGAAGTAGTTGAAGTTGTAG+AGG - chr1_1:7641386-7641405 None:intergenic 35.0%
TGATTATGATGAAGCAGCAA+CGG + chr1_1:7641459-7641478 Msa0005190:CDS 35.0%
TGACCTTGTAGTAAGGAATT+AGG - chr1_1:7639393-7639412 None:intergenic 35.0%
!!! TTGGTTTTGACCTTGTAGTA+AGG - chr1_1:7639400-7639419 None:intergenic 35.0%
CCAAGTAAGTTAAAGAAGGT+GGG - chr1_1:7639456-7639475 None:intergenic 35.0%
TCCAAGTAAGTTAAAGAAGG+TGG - chr1_1:7639457-7639476 None:intergenic 35.0%
GTCTCCAAGTAAGTTAAAGA+AGG - chr1_1:7639460-7639479 None:intergenic 35.0%
TTCATCAAGTGAGTCAGTTA+TGG + chr1_1:7640246-7640265 Msa0005190:CDS 35.0%
! GGACTAGTACCATAATTACT+AGG - chr1_1:7640502-7640521 None:intergenic 35.0%
ACAATCAGAACAAACCCTAA+CGG - chr1_1:7640584-7640603 None:intergenic 35.0%
TGGGATTAACGAATTACCTT+TGG - chr1_1:7640649-7640668 None:intergenic 35.0%
GAAAGAATAGTGAATAAGGC+TGG - chr1_1:7640669-7640688 None:intergenic 35.0%
AGAAGTAGTTGAAGTTGTAG+AGG - chr1_1:7641386-7641405 None:intergenic 35.0%
TGATTATGATGAAGCAGCAA+CGG + chr1_1:7641459-7641478 Msa0005190:CDS 35.0%
TGTAGTAAGGAATTAGGACC+TGG - chr1_1:7639387-7639406 None:intergenic 40.0%
GGTCCTAATTCCTTACTACA+AGG + chr1_1:7639387-7639406 Msa0005190:CDS 40.0%
! CCCACCTTCTTTAACTTACT+TGG + chr1_1:7639453-7639472 Msa0005190:CDS 40.0%
TGAAACAAGAGAACGTTTGG+TGG + chr1_1:7639786-7639805 Msa0005190:intron 40.0%
AAGCTGGCATTTCATCATGA+TGG + chr1_1:7640190-7640209 Msa0005190:CDS 40.0%
TTTATCATCATCCTTGGAGC+TGG + chr1_1:7640297-7640316 Msa0005190:CDS 40.0%
AGCAGCAAAAAGATGAGTCA+CGG + chr1_1:7640325-7640344 Msa0005190:CDS 40.0%
GATGGATGTCTTCAAAGATG+AGG + chr1_1:7640356-7640375 Msa0005190:CDS 40.0%
TGGTCTCATTATTGGAGTTG+TGG - chr1_1:7640419-7640438 None:intergenic 40.0%
! GTGGCTGCAATATTGTTGTT+TGG - chr1_1:7640439-7640458 None:intergenic 40.0%
!! CTTGATAGCTTTGTCAGTAG+TGG - chr1_1:7640458-7640477 None:intergenic 40.0%
! TGTTACTACTAGGGCTTGTT+TGG - chr1_1:7640549-7640568 None:intergenic 40.0%
TGTTACCGCTGTTACTACTA+GGG - chr1_1:7640558-7640577 None:intergenic 40.0%
TTGTTACCGCTGTTACTACT+AGG - chr1_1:7640559-7640578 None:intergenic 40.0%
GAATTACCTTTGGACCCATA+GGG - chr1_1:7640639-7640658 None:intergenic 40.0%
TTTGCAATGCTTGTGGAATC+AGG + chr1_1:7641236-7641255 Msa0005190:CDS 40.0%
! CTTCTGGTGGATATATCTTC+TGG + chr1_1:7641490-7641509 Msa0005190:CDS 40.0%
TGTAGTAAGGAATTAGGACC+TGG - chr1_1:7639387-7639406 None:intergenic 40.0%
GGTCCTAATTCCTTACTACA+AGG + chr1_1:7639387-7639406 Msa0005190:CDS 40.0%
! CCCACCTTCTTTAACTTACT+TGG + chr1_1:7639453-7639472 Msa0005190:CDS 40.0%
TGAAACAAGAGAACGTTTGG+TGG + chr1_1:7639786-7639805 Msa0005190:intron 40.0%
AAGCTGGCATTTCATCATGA+TGG + chr1_1:7640190-7640209 Msa0005190:CDS 40.0%
TTTATCATCATCCTTGGAGC+TGG + chr1_1:7640297-7640316 Msa0005190:CDS 40.0%
AGCAGCAAAAAGATGAGTCA+CGG + chr1_1:7640325-7640344 Msa0005190:CDS 40.0%
GATGGATGTCTTCAAAGATG+AGG + chr1_1:7640356-7640375 Msa0005190:CDS 40.0%
TGGTCTCATTATTGGAGTTG+TGG - chr1_1:7640419-7640438 None:intergenic 40.0%
! GTGGCTGCAATATTGTTGTT+TGG - chr1_1:7640439-7640458 None:intergenic 40.0%
!! CTTGATAGCTTTGTCAGTAG+TGG - chr1_1:7640458-7640477 None:intergenic 40.0%
! TGTTACTACTAGGGCTTGTT+TGG - chr1_1:7640549-7640568 None:intergenic 40.0%
TGTTACCGCTGTTACTACTA+GGG - chr1_1:7640558-7640577 None:intergenic 40.0%
TTGTTACCGCTGTTACTACT+AGG - chr1_1:7640559-7640578 None:intergenic 40.0%
GAATTACCTTTGGACCCATA+GGG - chr1_1:7640639-7640658 None:intergenic 40.0%
TTTGCAATGCTTGTGGAATC+AGG + chr1_1:7641236-7641255 Msa0005190:CDS 40.0%
! CTTCTGGTGGATATATCTTC+TGG + chr1_1:7641490-7641509 Msa0005190:CDS 40.0%
AGTAAGGAATTAGGACCTGG+TGG - chr1_1:7639384-7639403 None:intergenic 45.0%
GCAGCAAAAAGATGAGTCAC+GGG + chr1_1:7640326-7640345 Msa0005190:CDS 45.0%
ACAAGCCCTAGTAGTAACAG+CGG + chr1_1:7640550-7640569 Msa0005190:CDS 45.0%
CGAATTACCTTTGGACCCAT+AGG - chr1_1:7640640-7640659 None:intergenic 45.0%
! CAGTCACTTTGCAATGCTTG+TGG + chr1_1:7641229-7641248 Msa0005190:intron 45.0%
TTGTGGAATCAGGCAGAGAA+AGG + chr1_1:7641246-7641265 Msa0005190:CDS 45.0%
TTATGATGAAGCAGCAACGG+CGG + chr1_1:7641462-7641481 Msa0005190:CDS 45.0%
AGTAAGGAATTAGGACCTGG+TGG - chr1_1:7639384-7639403 None:intergenic 45.0%
GCAGCAAAAAGATGAGTCAC+GGG + chr1_1:7640326-7640345 Msa0005190:CDS 45.0%
ACAAGCCCTAGTAGTAACAG+CGG + chr1_1:7640550-7640569 Msa0005190:CDS 45.0%
CGAATTACCTTTGGACCCAT+AGG - chr1_1:7640640-7640659 None:intergenic 45.0%
! CAGTCACTTTGCAATGCTTG+TGG + chr1_1:7641229-7641248 Msa0005190:intron 45.0%
TTGTGGAATCAGGCAGAGAA+AGG + chr1_1:7641246-7641265 Msa0005190:CDS 45.0%
TTATGATGAAGCAGCAACGG+CGG + chr1_1:7641462-7641481 Msa0005190:CDS 45.0%
!!! TATTAATATATTTTTTTTGT+GGG - chr1_1:7640787-7640806 None:intergenic 5.0%
!!! ATATTAATATATTTTTTTTG+TGG - chr1_1:7640788-7640807 None:intergenic 5.0%
!!! TAATTTTTATTATTATATCA+CGG + chr1_1:7641070-7641089 Msa0005190:intron 5.0%
!!! TATTAATATATTTTTTTTGT+GGG - chr1_1:7640787-7640806 None:intergenic 5.0%
!!! ATATTAATATATTTTTTTTG+TGG - chr1_1:7640788-7640807 None:intergenic 5.0%
!!! TAATTTTTATTATTATATCA+CGG + chr1_1:7641070-7641089 Msa0005190:intron 5.0%
!! CCTGGTGGATTCAGAGAAAC+AGG - chr1_1:7639369-7639388 None:intergenic 50.0%
! CCTGTTTCTCTGAATCCACC+AGG + chr1_1:7639366-7639385 Msa0005190:CDS 50.0%
!! GTGGGAGTGTCCTGATTAAC+AGG - chr1_1:7639438-7639457 None:intergenic 50.0%
ACAGCGGTAACAACACCGTT+AGG + chr1_1:7640566-7640585 Msa0005190:CDS 50.0%
CAGCGGTAACAACACCGTTA+GGG + chr1_1:7640567-7640586 Msa0005190:CDS 50.0%
GTACATCCCATACCCCACTA+TGG + chr1_1:7640605-7640624 Msa0005190:CDS 50.0%
! ACTCCTCCATAGTGGGGTAT+GGG - chr1_1:7640614-7640633 None:intergenic 50.0%
TCAGGCAGAGAAAGGCAAGA+AGG + chr1_1:7641254-7641273 Msa0005190:CDS 50.0%
CAGGCAGAGAAAGGCAAGAA+GGG + chr1_1:7641255-7641274 Msa0005190:CDS 50.0%
AGGGGATGTAGCCAAACCAT+TGG - chr1_1:7641296-7641315 None:intergenic 50.0%
!! CCTGGTGGATTCAGAGAAAC+AGG - chr1_1:7639369-7639388 None:intergenic 50.0%
! CCTGTTTCTCTGAATCCACC+AGG + chr1_1:7639366-7639385 Msa0005190:CDS 50.0%
!! GTGGGAGTGTCCTGATTAAC+AGG - chr1_1:7639438-7639457 None:intergenic 50.0%
ACAGCGGTAACAACACCGTT+AGG + chr1_1:7640566-7640585 Msa0005190:CDS 50.0%
CAGCGGTAACAACACCGTTA+GGG + chr1_1:7640567-7640586 Msa0005190:CDS 50.0%
GTACATCCCATACCCCACTA+TGG + chr1_1:7640605-7640624 Msa0005190:CDS 50.0%
! ACTCCTCCATAGTGGGGTAT+GGG - chr1_1:7640614-7640633 None:intergenic 50.0%
TCAGGCAGAGAAAGGCAAGA+AGG + chr1_1:7641254-7641273 Msa0005190:CDS 50.0%
CAGGCAGAGAAAGGCAAGAA+GGG + chr1_1:7641255-7641274 Msa0005190:CDS 50.0%
AGGGGATGTAGCCAAACCAT+TGG - chr1_1:7641296-7641315 None:intergenic 50.0%
GCTGCTATCTTCCAGCTCCA+AGG - chr1_1:7640311-7640330 None:intergenic 55.0%
TGAGTCACGGGTCTGAGAGA+TGG + chr1_1:7640338-7640357 Msa0005190:CDS 55.0%
CATCCCATACCCCACTATGG+AGG + chr1_1:7640608-7640627 Msa0005190:CDS 55.0%
! CACTCCTCCATAGTGGGGTA+TGG - chr1_1:7640615-7640634 None:intergenic 55.0%
CATACCCCACTATGGAGGAG+TGG + chr1_1:7640613-7640632 Msa0005190:CDS 55.0%
TAGGGCCACTCCTCCATAGT+GGG - chr1_1:7640621-7640640 None:intergenic 55.0%
ATAGGGCCACTCCTCCATAG+TGG - chr1_1:7640622-7640641 None:intergenic 55.0%
ACTATGGAGGAGTGGCCCTA+TGG + chr1_1:7640621-7640640 Msa0005190:CDS 55.0%
CTATGGAGGAGTGGCCCTAT+GGG + chr1_1:7640622-7640641 Msa0005190:CDS 55.0%
GAGAAAGGCAAGAAGGGCCA+TGG + chr1_1:7641261-7641280 Msa0005190:CDS 55.0%
ACCATTGGCAGCTTCAGCCA+TGG - chr1_1:7641281-7641300 None:intergenic 55.0%
GGCTGAAGCTGCCAATGGTT+TGG + chr1_1:7641282-7641301 Msa0005190:CDS 55.0%
GCTGCTATCTTCCAGCTCCA+AGG - chr1_1:7640311-7640330 None:intergenic 55.0%
TGAGTCACGGGTCTGAGAGA+TGG + chr1_1:7640338-7640357 Msa0005190:CDS 55.0%
CATCCCATACCCCACTATGG+AGG + chr1_1:7640608-7640627 Msa0005190:CDS 55.0%
! CACTCCTCCATAGTGGGGTA+TGG - chr1_1:7640615-7640634 None:intergenic 55.0%
CATACCCCACTATGGAGGAG+TGG + chr1_1:7640613-7640632 Msa0005190:CDS 55.0%
TAGGGCCACTCCTCCATAGT+GGG - chr1_1:7640621-7640640 None:intergenic 55.0%
ATAGGGCCACTCCTCCATAG+TGG - chr1_1:7640622-7640641 None:intergenic 55.0%
ACTATGGAGGAGTGGCCCTA+TGG + chr1_1:7640621-7640640 Msa0005190:CDS 55.0%
CTATGGAGGAGTGGCCCTAT+GGG + chr1_1:7640622-7640641 Msa0005190:CDS 55.0%
GAGAAAGGCAAGAAGGGCCA+TGG + chr1_1:7641261-7641280 Msa0005190:CDS 55.0%
ACCATTGGCAGCTTCAGCCA+TGG - chr1_1:7641281-7641300 None:intergenic 55.0%
GGCTGAAGCTGCCAATGGTT+TGG + chr1_1:7641282-7641301 Msa0005190:CDS 55.0%
AGGGCCACTCCTCCATAGTG+GGG - chr1_1:7640620-7640639 None:intergenic 60.0%
GAGTGGCCCTATGGGTCCAA+AGG + chr1_1:7640630-7640649 Msa0005190:CDS 60.0%
GCCATGGCTGAAGCTGCCAA+TGG + chr1_1:7641277-7641296 Msa0005190:CDS 60.0%
AGGGCCACTCCTCCATAGTG+GGG - chr1_1:7640620-7640639 None:intergenic 60.0%
GAGTGGCCCTATGGGTCCAA+AGG + chr1_1:7640630-7640649 Msa0005190:CDS 60.0%
GCCATGGCTGAAGCTGCCAA+TGG + chr1_1:7641277-7641296 Msa0005190:CDS 60.0%
AGCAACGGCGGCACGACTTC+TGG + chr1_1:7641474-7641493 Msa0005190:CDS 65.0%
AACGGCGGCACGACTTCTGG+TGG + chr1_1:7641477-7641496 Msa0005190:CDS 65.0%
AGCAACGGCGGCACGACTTC+TGG + chr1_1:7641474-7641493 Msa0005190:CDS 65.0%
AACGGCGGCACGACTTCTGG+TGG + chr1_1:7641477-7641496 Msa0005190:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7639360 7641525 7639360 ID=Msa0005190;Name=Msa0005190
chr1_1 mRNA 7639360 7641525 7639360 ID=Msa0005190-mRNA-1;Parent=Msa0005190;Name=Msa0005190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0|1|1|1|3|0|302
chr1_1 exon 7639360 7639506 7639360 ID=Msa0005190-mRNA-1:exon:2716;Parent=Msa0005190-mRNA-1
chr1_1 exon 7640184 7640651 7640184 ID=Msa0005190-mRNA-1:exon:2717;Parent=Msa0005190-mRNA-1
chr1_1 exon 7641232 7641525 7641232 ID=Msa0005190-mRNA-1:exon:2718;Parent=Msa0005190-mRNA-1
chr1_1 CDS 7639360 7639506 7639360 ID=Msa0005190-mRNA-1:cds;Parent=Msa0005190-mRNA-1
chr1_1 CDS 7640184 7640651 7640184 ID=Msa0005190-mRNA-1:cds;Parent=Msa0005190-mRNA-1
chr1_1 CDS 7641232 7641525 7641232 ID=Msa0005190-mRNA-1:cds;Parent=Msa0005190-mRNA-1
Gene Sequence

>Msa0005190

ATGACTCCTGTTTCTCTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCTTCAATATTTCTCCTGTTAATCAGGACACTCCCACCTTCTTTAACTTACTTGGAGACTTTGGAGAAAATCATGATCATCATCAGGATCATAAGCTGGCATTTCATCATGATGGATCATCATCAAGCAATCACCAACAACTCTATAATTCATCAAGTGAGTCAGTTATGGTTGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTGGAAGATAGCAGCAAAAAGATGAGTCACGGGTCTGAGAGATGGATGTCTTCAAAGATGAGGTTGATGAATAAAATGATCAACAAAACTGCTACTGTTGCCACAACTCCAATAATGAGACCAAACAACAATATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAAACCTAGTAATTATGGTACTAGTCCAAGAAATCAAAATATAAGGTACAACCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTACATCCCATACCCCACTATGGAGGAGTGGCCCTATGGGTCCAAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGTTTGGCTACATCCCCTAAAACTAAAGTGCTTAAGATAAAGAAGCCTACACAATTCAAGACTAAGAACAAGGCTTCTACTAGTACCTCTACAACTTCAACTACTTCTGCTAGCTCATCATCTCAAGATGTGAAGAAACTTGAATCTTTTCCATTAGATTATGATTATGATGAAGCAGCAACGGCGGCACGACTTCTGGTGGATATATCTTCTGGTGTTACTTATTGA

Protein sequence

>Msa0005190

MTPVSLNPPGPNSLLQGQNQFFNISPVNQDTPTFFNLLGDFGENHDHHQDHKLAFHHDGSSSSNHQQLYNSSSESVMVDSSSARDTNLSSSLELEDSSKKMSHGSERWMSSKMRLMNKMINKTATVATTPIMRPNNNIAATTDKAIKTTTPMMKPSNYGTSPRNQNIRYNQTSPSSNSGNNTVRVCSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKTKVLKIKKPTQFKTKNKASTSTSTTSTTSASSSSQDVKKLESFPLDYDYDEAATAARLLVDISSGVTY*