AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0330240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0330240 MtrunA17_Chr2g0312521 94.928 138 5 1 1 138 1 136 6.01e-88 252
Msa0330240 MtrunA17_Chr4g0053641 56.000 75 14 1 18 92 24 79 9.00e-20 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0330240 AT1G79040.1 71.127 142 35 3 1 138 1 140 3.01e-63 190

Find 75 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCGACTGGCTTGGCTATC+TGG 0.093434 2_4:+44472351 Msa0330240:CDS
TTGAACTAATCTAAGATTAA+TGG 0.187241 2_4:-44472815 None:intergenic
TAACATGTTGATAAACATTT+TGG 0.191956 2_4:-44472612 None:intergenic
CCATTTAAGTATTTAGTCTT+TGG 0.256901 2_4:+44472711 Msa0330240:three_prime_UTR
GTTGAGAAATCTTCAGTTAG+AGG 0.283121 2_4:+44470132 Msa0330240:CDS
CCAAAGACTAAATACTTAAA+TGG 0.283652 2_4:-44472711 None:intergenic
CAGTCCTTTGGGTCGTAGAT+AGG 0.323072 2_4:-44471740 None:intergenic
TATATAACCATGCATCTCTA+TGG 0.324691 2_4:+44472584 Msa0330240:three_prime_UTR
CCGGTTGGAGACCAGTCCTT+TGG 0.338674 2_4:-44471752 None:intergenic
CCAGATGGAAAAGATGCTTC+TGG 0.381325 2_4:+44470395 Msa0330240:CDS
ATTAAGACTGACACACCTTA+TGG 0.391389 2_4:+44470207 Msa0330240:CDS
AGTATTTAGTCTTTGGCTTA+CGG 0.392100 2_4:+44472718 Msa0330240:three_prime_UTR
GCATGAATGAAAATACCTAA+TGG 0.404950 2_4:-44473155 None:intergenic
GAGGACTACCTACCCTTTCA+AGG 0.407032 2_4:+44470151 Msa0330240:CDS
CGGTTGGAGACCAGTCCTTT+GGG 0.408090 2_4:-44471751 None:intergenic
CACCGTATTTGTCCACAAAC+TGG 0.410816 2_4:-44471302 None:intergenic
TGAAATGGCATCTTCAGTTA+TGG 0.416983 2_4:+44470071 Msa0330240:exon
AATACACCCGCGATCCCATT+AGG 0.421601 2_4:+44473140 Msa0330240:three_prime_UTR
CATGAATGAAAATACCTAAT+GGG 0.429707 2_4:-44473154 None:intergenic
TCCGACTGGCTTGGCTATCT+GGG 0.439109 2_4:+44472352 Msa0330240:CDS
ACCACTGGCAACAACTTTGA+AGG 0.450669 2_4:-44470175 None:intergenic
AAAGGGTGTTTACCAGTTTG+TGG 0.454085 2_4:+44471290 Msa0330240:CDS
CTCTTTGATAATACTAATGT+AGG 0.459828 2_4:+44472757 Msa0330240:three_prime_UTR
GTGCTAATGTTGATGGATAC+AGG 0.463270 2_4:+44471322 Msa0330240:CDS
AAATACGGTGCTAATGTTGA+TGG 0.464376 2_4:+44471315 Msa0330240:CDS
CTTAATCTTCTTGCCACCAC+TGG 0.469574 2_4:-44470190 None:intergenic
TACCAGTTTGTGGACAAATA+CGG 0.473942 2_4:+44471300 Msa0330240:CDS
TTATTAATTGCAGGTCCGAC+TGG 0.479017 2_4:+44472338 Msa0330240:intron
AACTTTGAAGGGCCTTGAAA+GGG 0.480906 2_4:-44470163 None:intergenic
ATCTGGGCAGTAACTCTAGC+TGG 0.496777 2_4:+44472368 Msa0330240:CDS
TTTCATGCTGTAAGCTGTCT+CGG 0.498626 2_4:+44472792 Msa0330240:three_prime_UTR
CCAAAGGACTGGTCTCCAAC+CGG 0.502102 2_4:+44471752 Msa0330240:CDS
CAAACAAACTCCACCGAGAT+CGG 0.503968 2_4:+44472862 Msa0330240:three_prime_UTR
ACTCTAGCTGGTCTTCTAGC+TGG 0.504630 2_4:+44472380 Msa0330240:CDS
TTTGTTTGTGCCACGTGGCA+TGG 0.508119 2_4:-44469961 None:intergenic
CAACTTTGAAGGGCCTTGAA+AGG 0.508466 2_4:-44470164 None:intergenic
AGTCCTTTGGGTCGTAGATA+GGG 0.509259 2_4:-44471739 None:intergenic
CACAATATTTATAGAACAGA+AGG 0.512290 2_4:-44472537 None:intergenic
TTCAAAGTTGTTGCCAGTGG+TGG 0.513402 2_4:+44470177 Msa0330240:CDS
AATTGCAGGTCCGACTGGCT+TGG 0.514526 2_4:+44472343 Msa0330240:intron
TGCTTCTGGCAGGAAACAAA+AGG 0.517286 2_4:+44470409 Msa0330240:CDS
AAATGTAAAGCACATAATGT+GGG 0.529451 2_4:+44472891 Msa0330240:three_prime_UTR
CAAACAAAATCACAAATCCT+TGG 0.531913 2_4:+44469976 Msa0330240:five_prime_UTR
ACACCAATAGCAATCTGAAA+AGG 0.531985 2_4:+44473041 Msa0330240:three_prime_UTR
AAAATGTAAAGCACATAATG+TGG 0.534848 2_4:+44472890 Msa0330240:three_prime_UTR
TGTTTATAAGTGATAGTCTA+CGG 0.536090 2_4:+44472658 Msa0330240:three_prime_UTR
ACAGTGAAACTGAAAGGAGT+TGG 0.536142 2_4:-44470111 None:intergenic
TTTAGGAACTGGAGGTGGCA+TGG 0.542136 2_4:+44470367 Msa0330240:intron
ATGGAAAAGATGCTTCTGGC+AGG 0.542571 2_4:+44470399 Msa0330240:CDS
AAAATACCTAATGGGATCGC+GGG 0.553240 2_4:-44473146 None:intergenic
TCTGTTCTATAAATATTGTG+TGG 0.554934 2_4:+44472540 Msa0330240:three_prime_UTR
CCCTTCAAAGTTGTTGCCAG+TGG 0.558879 2_4:+44470174 Msa0330240:CDS
TTCTCAACAGTGAAACTGAA+AGG 0.577494 2_4:-44470117 None:intergenic
CCACTGGCAACAACTTTGAA+GGG 0.578449 2_4:-44470174 None:intergenic
CTAGCTGGTCTTCTAGCTGG+TGG 0.579831 2_4:+44472383 Msa0330240:CDS
ATATACTCATCAATTACTTG+TGG 0.583157 2_4:+44472506 Msa0330240:three_prime_UTR
GGTGGCATGGCCTTGCCAGA+TGG 0.588864 2_4:+44470380 Msa0330240:CDS
TTGGTATGGGCAACAAAACA+AGG 0.588926 2_4:-44470031 None:intergenic
CTATCTACGACCCAAAGGAC+TGG 0.590400 2_4:+44471741 Msa0330240:CDS
GAAAATACCTAATGGGATCG+CGG 0.599166 2_4:-44473147 None:intergenic
GGTGAAGCCATAGAGATGCA+TGG 0.605619 2_4:-44472591 None:intergenic
TTGAAGGGCCTTGAAAGGGT+AGG 0.616076 2_4:-44470159 None:intergenic
ACCTCCAGTGTAGACATCAC+CGG 0.624297 2_4:-44471771 None:intergenic
GTATTATCAAAGAGATAACA+AGG 0.640449 2_4:-44472748 None:intergenic
CAGCCCTATCTACGACCCAA+AGG 0.645785 2_4:+44471736 Msa0330240:intron
CCAACCGGTGATGTCTACAC+TGG 0.647391 2_4:+44471767 Msa0330240:CDS
AAGCACTTGTGTTGTAGACA+AGG 0.648013 2_4:-44472412 None:intergenic
GCCCAGATAGCCAAGCCAGT+CGG 0.648776 2_4:-44472353 None:intergenic
ACCGGTGATGTCTACACTGG+AGG 0.649993 2_4:+44471770 Msa0330240:CDS
AATGTAAAGCACATAATGTG+GGG 0.654683 2_4:+44472892 Msa0330240:three_prime_UTR
CCAGTGTAGACATCACCGGT+TGG 0.671824 2_4:-44471767 None:intergenic
ACCATAAATTCCATGCCACG+TGG 0.692899 2_4:+44469951 None:intergenic
ACAAACTCCACCGAGATCGG+AGG 0.693791 2_4:+44472865 Msa0330240:three_prime_UTR
TTGTATTATATGCATCAGTG+TGG 0.704850 2_4:-44473079 None:intergenic
ATAATATAGAGTAGACACCA+AGG 0.730067 2_4:-44469993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTTTATTTTATTT+TGG + chr2_4:44470437-44470456 Msa0330240:intron 0.0%
!!! AATTTTGTTAATATGATTTT+AGG + chr2_4:44470350-44470369 Msa0330240:intron 10.0%
!!! TAGTTATAGATTATTTATTT+TGG + chr2_4:44470466-44470485 Msa0330240:intron 10.0%
!!! AATTTAATAAACTTTTTTTG+AGG + chr2_4:44470536-44470555 Msa0330240:intron 10.0%
!!! TAATTTAAACCTTTATTTAT+TGG + chr2_4:44470926-44470945 Msa0330240:intron 10.0%
!!! AATTTTTTTTTTGTATAAAG+TGG + chr2_4:44472090-44472109 Msa0330240:intron 10.0%
!!! CAAATTCTTTTTTTGATATT+TGG - chr2_4:44470053-44470072 None:intergenic 15.0%
!! ATCAAAAAAAGAATTTGAAA+TGG + chr2_4:44470056-44470075 Msa0330240:exon 15.0%
!! AATTGAACTAAGAAAAAAAA+AGG - chr2_4:44470247-44470266 None:intergenic 15.0%
!!! TTATAGATTATTTATTTTGG+TGG + chr2_4:44470469-44470488 Msa0330240:intron 15.0%
!! TATTTACTACCAATAAATAA+AGG - chr2_4:44470938-44470957 None:intergenic 15.0%
!!! TCTTAATTTCAATTTTATTC+AGG + chr2_4:44471266-44471285 Msa0330240:intron 15.0%
!!! CTTAATTTCAATTTTATTCA+GGG + chr2_4:44471267-44471286 Msa0330240:intron 15.0%
!!! AAATTACATTTTGAATAAGT+AGG - chr2_4:44471701-44471720 None:intergenic 15.0%
!!! TAACAAATTTTATTAATTGC+AGG + chr2_4:44472329-44472348 Msa0330240:intron 15.0%
!!! CTTTTTTTGATATTTGGTAT+GGG - chr2_4:44470047-44470066 None:intergenic 20.0%
!!! TCTTTTTTTGATATTTGGTA+TGG - chr2_4:44470048-44470067 None:intergenic 20.0%
!!! GGAATTTTATGTATTAACAT+AGG + chr2_4:44470490-44470509 Msa0330240:intron 20.0%
!! ATTATCAAGATTTATTTCCA+TGG + chr2_4:44470642-44470661 Msa0330240:intron 20.0%
!! TTATCAAGATTTATTTCCAT+GGG + chr2_4:44470643-44470662 Msa0330240:intron 20.0%
!!! ATTTTTTTGTTTTAATCCTC+TGG - chr2_4:44470673-44470692 None:intergenic 20.0%
!!! ATTTATTCAACTTTTAGCTT+TGG + chr2_4:44470710-44470729 Msa0330240:intron 20.0%
!! GATCTAATGAAATACATTAA+AGG + chr2_4:44471065-44471084 Msa0330240:intron 20.0%
!! AATAATAGATAACAATGTTC+TGG - chr2_4:44471169-44471188 None:intergenic 20.0%
!!! TTTCATTTTTTCTGAATTCT+AGG + chr2_4:44471353-44471372 Msa0330240:intron 20.0%
!! ATTAAACATGTAAACAAAAC+TGG - chr2_4:44471380-44471399 None:intergenic 20.0%
!! ACATGTTTAATAACATAGTT+AGG + chr2_4:44471389-44471408 Msa0330240:intron 20.0%
!! TGAAATAATTATGTCATTAG+AGG + chr2_4:44471412-44471431 Msa0330240:intron 20.0%
!!! TTTTTAAAACATTGCTTTAG+AGG - chr2_4:44471881-44471900 None:intergenic 20.0%
!!! TAAAGCAATGTTTTAAAAAC+TGG + chr2_4:44471882-44471901 Msa0330240:intron 20.0%
!!! TAACATGTTGATAAACATTT+TGG - chr2_4:44472615-44472634 None:intergenic 20.0%
!!! TTGAACTAATCTAAGATTAA+TGG - chr2_4:44472818-44472837 None:intergenic 20.0%
!!! GTTAATATGATTTTAGGAAC+TGG + chr2_4:44470356-44470375 Msa0330240:intron 25.0%
! GATAACTAAAATCTGACTTA+TGG - chr2_4:44470605-44470624 None:intergenic 25.0%
!! GTTTTTCATATAAGAAGAGA+GGG - chr2_4:44470765-44470784 None:intergenic 25.0%
!! AGTTTTTCATATAAGAAGAG+AGG - chr2_4:44470766-44470785 None:intergenic 25.0%
! CTCTTCTTATATGAAAAACT+TGG + chr2_4:44470766-44470785 Msa0330240:intron 25.0%
!!! AAGTAAGGTGGATTTTATAT+AGG + chr2_4:44471043-44471062 Msa0330240:intron 25.0%
!! TTTCAATTTTATTCAGGGAA+AGG + chr2_4:44471272-44471291 Msa0330240:intron 25.0%
!! TTCAATTTTATTCAGGGAAA+GGG + chr2_4:44471273-44471292 Msa0330240:intron 25.0%
! TTAAACAATCATGACATAAG+TGG + chr2_4:44471447-44471466 Msa0330240:intron 25.0%
! TAGGTCAAAGTCTATATAAT+TGG - chr2_4:44471682-44471701 None:intergenic 25.0%
!!! AGGTAAGAAACTTCTTTTTT+TGG + chr2_4:44471790-44471809 Msa0330240:intron 25.0%
!!! GGTAAGAAACTTCTTTTTTT+GGG + chr2_4:44471791-44471810 Msa0330240:intron 25.0%
! ATAAAATAGCATGAACTGTA+GGG + chr2_4:44471846-44471865 Msa0330240:intron 25.0%
!! TTTGTTATCATACTATTGCT+AGG - chr2_4:44472316-44472335 None:intergenic 25.0%
! ATATACTCATCAATTACTTG+TGG + chr2_4:44472506-44472525 Msa0330240:three_prime_UTR 25.0%
! CACAATATTTATAGAACAGA+AGG - chr2_4:44472540-44472559 None:intergenic 25.0%
! TCTGTTCTATAAATATTGTG+TGG + chr2_4:44472540-44472559 Msa0330240:three_prime_UTR 25.0%
! TGTTTATAAGTGATAGTCTA+CGG + chr2_4:44472658-44472677 Msa0330240:three_prime_UTR 25.0%
! CCAAAGACTAAATACTTAAA+TGG - chr2_4:44472714-44472733 None:intergenic 25.0%
!! CCATTTAAGTATTTAGTCTT+TGG + chr2_4:44472711-44472730 Msa0330240:three_prime_UTR 25.0%
! GTATTATCAAAGAGATAACA+AGG - chr2_4:44472751-44472770 None:intergenic 25.0%
!! CTCTTTGATAATACTAATGT+AGG + chr2_4:44472757-44472776 Msa0330240:three_prime_UTR 25.0%
! AAAATGTAAAGCACATAATG+TGG + chr2_4:44472890-44472909 Msa0330240:three_prime_UTR 25.0%
! AAATGTAAAGCACATAATGT+GGG + chr2_4:44472891-44472910 Msa0330240:three_prime_UTR 25.0%
! CATGAATGAAAATACCTAAT+GGG - chr2_4:44473157-44473176 None:intergenic 25.0%
CAAACAAAATCACAAATCCT+TGG + chr2_4:44469976-44469995 Msa0330240:five_prime_UTR 30.0%
ATAATATAGAGTAGACACCA+AGG - chr2_4:44469996-44470015 None:intergenic 30.0%
GTACTAATGAACTAACCATA+AGG - chr2_4:44470225-44470244 None:intergenic 30.0%
!! AATATGATTTTAGGAACTGG+AGG + chr2_4:44470359-44470378 Msa0330240:intron 30.0%
TATGTATTAACATAGGCTTG+TGG + chr2_4:44470497-44470516 Msa0330240:intron 30.0%
! TTGATAATTCGTAGTTCGAT+TGG - chr2_4:44470630-44470649 None:intergenic 30.0%
AGAATAAATAGTAGACCAAG+AGG - chr2_4:44470736-44470755 None:intergenic 30.0%
! GAAAAACTTGGTAGTTTCTA+AGG + chr2_4:44470778-44470797 Msa0330240:intron 30.0%
TAAGTAGAGAGTGATTCTTA+AGG + chr2_4:44470880-44470899 Msa0330240:intron 30.0%
AAGTAGAGAGTGATTCTTAA+GGG + chr2_4:44470881-44470900 Msa0330240:intron 30.0%
GTTTCTCACAAGATAAAGTA+AGG + chr2_4:44471028-44471047 Msa0330240:intron 30.0%
! TTGAGTGTCCCTTATATTTT+TGG + chr2_4:44471188-44471207 Msa0330240:intron 30.0%
! TGAGTGTCCCTTATATTTTT+GGG + chr2_4:44471189-44471208 Msa0330240:intron 30.0%
CAGAAAGCCCAAAAATATAA+GGG - chr2_4:44471199-44471218 None:intergenic 30.0%
TCAGAAAGCCCAAAAATATA+AGG - chr2_4:44471200-44471219 None:intergenic 30.0%
GCTCGTACATATAAAAAAGT+TGG + chr2_4:44471564-44471583 Msa0330240:intron 30.0%
GATAAAATAGCATGAACTGT+AGG + chr2_4:44471845-44471864 Msa0330240:intron 30.0%
AACATCAAGTCATCAACAAT+AGG - chr2_4:44472011-44472030 None:intergenic 30.0%
TGGATGTTTATTTACTTCAG+AGG + chr2_4:44472110-44472129 Msa0330240:intron 30.0%
ATGTTTATTTACTTCAGAGG+AGG + chr2_4:44472113-44472132 Msa0330240:intron 30.0%
TGTTTATTTACTTCAGAGGA+GGG + chr2_4:44472114-44472133 Msa0330240:intron 30.0%
!! TAGAGAGTAGTGTTTAGTTT+TGG + chr2_4:44472149-44472168 Msa0330240:intron 30.0%
AAATCTTTGTATAGCCAACA+CGG - chr2_4:44472256-44472275 None:intergenic 30.0%
TATATAACCATGCATCTCTA+TGG + chr2_4:44472584-44472603 Msa0330240:three_prime_UTR 30.0%
! AGTATTTAGTCTTTGGCTTA+CGG + chr2_4:44472718-44472737 Msa0330240:three_prime_UTR 30.0%
AATGTAAAGCACATAATGTG+GGG + chr2_4:44472892-44472911 Msa0330240:three_prime_UTR 30.0%
! TTACCTTTTCAGATTGCTAT+TGG - chr2_4:44473047-44473066 None:intergenic 30.0%
TTGTATTATATGCATCAGTG+TGG - chr2_4:44473082-44473101 None:intergenic 30.0%
GCATGAATGAAAATACCTAA+TGG - chr2_4:44473158-44473177 None:intergenic 30.0%
TGAAATGGCATCTTCAGTTA+TGG + chr2_4:44470071-44470090 Msa0330240:exon 35.0%
TTCTCAACAGTGAAACTGAA+AGG - chr2_4:44470120-44470139 None:intergenic 35.0%
GTTGAGAAATCTTCAGTTAG+AGG + chr2_4:44470132-44470151 Msa0330240:CDS 35.0%
ATTAAGACTGACACACCTTA+TGG + chr2_4:44470207-44470226 Msa0330240:CDS 35.0%
!! CTTGGTAGTTTCTAAGGTAT+TGG + chr2_4:44470784-44470803 Msa0330240:intron 35.0%
AACCACATAGGCTAATTGAA+AGG + chr2_4:44470837-44470856 Msa0330240:intron 35.0%
! ATCCTTTCAATTAGCCTATG+TGG - chr2_4:44470842-44470861 None:intergenic 35.0%
TCTCACAAGATAAAGTAAGG+TGG + chr2_4:44471031-44471050 Msa0330240:intron 35.0%
! TTTTGGGCTTTCTGAATTGT+TGG + chr2_4:44471205-44471224 Msa0330240:intron 35.0%
TACCAGTTTGTGGACAAATA+CGG + chr2_4:44471300-44471319 Msa0330240:CDS 35.0%
! AAATACGGTGCTAATGTTGA+TGG + chr2_4:44471315-44471334 Msa0330240:CDS 35.0%
CAAGACTAATGTCTCATGTT+TGG + chr2_4:44471529-44471548 Msa0330240:intron 35.0%
! GACTAATGTCTCTCATGTTT+TGG + chr2_4:44471628-44471647 Msa0330240:intron 35.0%
ATAGGGCTGCATAATAAAAC+AGG - chr2_4:44471725-44471744 None:intergenic 35.0%
ATAAGTTCAACTGGTCGAAT+TGG + chr2_4:44471914-44471933 Msa0330240:intron 35.0%
TAAGTTCAACTGGTCGAATT+GGG + chr2_4:44471915-44471934 Msa0330240:intron 35.0%
! CATGAGCGAAGATAGTTTTT+AGG - chr2_4:44472180-44472199 None:intergenic 35.0%
!!! CCTTCATTTTTAGAGCTACA+TGG - chr2_4:44472486-44472505 None:intergenic 35.0%
!! CCATGTAGCTCTAAAAATGA+AGG + chr2_4:44472483-44472502 Msa0330240:three_prime_UTR 35.0%
! CAATGCATGTTTTCTGTTCA+TGG - chr2_4:44472640-44472659 None:intergenic 35.0%
!! TACATTTTAACCTCCGATCT+CGG - chr2_4:44472878-44472897 None:intergenic 35.0%
!! GATAAATCTTTTGCTGACTG+AGG - chr2_4:44472947-44472966 None:intergenic 35.0%
ACACCAATAGCAATCTGAAA+AGG + chr2_4:44473041-44473060 Msa0330240:three_prime_UTR 35.0%
TTGGTATGGGCAACAAAACA+AGG - chr2_4:44470034-44470053 None:intergenic 40.0%
ACAGTGAAACTGAAAGGAGT+TGG - chr2_4:44470114-44470133 None:intergenic 40.0%
! AACTTTGAAGGGCCTTGAAA+GGG - chr2_4:44470166-44470185 None:intergenic 40.0%
!! ATGATTTTAGGAACTGGAGG+TGG + chr2_4:44470362-44470381 Msa0330240:intron 40.0%
!!! AACTTTTAGCTTTGGCCTCT+TGG + chr2_4:44470718-44470737 Msa0330240:intron 40.0%
CCTATGTGGTTGAGATGTTA+AGG - chr2_4:44470828-44470847 None:intergenic 40.0%
CCTTAACATCTCAACCACAT+AGG + chr2_4:44470825-44470844 Msa0330240:intron 40.0%
! GGCTTTCTGAATTGTTGGTT+TGG + chr2_4:44471210-44471229 Msa0330240:intron 40.0%
!! AAAGGGTGTTTACCAGTTTG+TGG + chr2_4:44471290-44471309 Msa0330240:CDS 40.0%
! GTGCTAATGTTGATGGATAC+AGG + chr2_4:44471322-44471341 Msa0330240:CDS 40.0%
GCATGAACTGTAGGGATTTA+TGG + chr2_4:44471854-44471873 Msa0330240:intron 40.0%
ATCGAGCTGATAAGTTCAAC+TGG + chr2_4:44471905-44471924 Msa0330240:intron 40.0%
AATTGGGAATCGTCTATCAC+TGG + chr2_4:44471931-44471950 Msa0330240:intron 40.0%
CAACTATTTCAAGACCGTGT+TGG + chr2_4:44472239-44472258 Msa0330240:intron 40.0%
TTATTAATTGCAGGTCCGAC+TGG + chr2_4:44472338-44472357 Msa0330240:intron 40.0%
AAGCACTTGTGTTGTAGACA+AGG - chr2_4:44472415-44472434 None:intergenic 40.0%
TTTCATGCTGTAAGCTGTCT+CGG + chr2_4:44472792-44472811 Msa0330240:three_prime_UTR 40.0%
AAAATACCTAATGGGATCGC+GGG - chr2_4:44473149-44473168 None:intergenic 40.0%
GAAAATACCTAATGGGATCG+CGG - chr2_4:44473150-44473169 None:intergenic 40.0%
!! GTGATTTTGTTTGTGCCACG+TGG - chr2_4:44469969-44469988 None:intergenic 45.0%
! CAACTTTGAAGGGCCTTGAA+AGG - chr2_4:44470167-44470186 None:intergenic 45.0%
CCACTGGCAACAACTTTGAA+GGG - chr2_4:44470177-44470196 None:intergenic 45.0%
ACCACTGGCAACAACTTTGA+AGG - chr2_4:44470178-44470197 None:intergenic 45.0%
TTCAAAGTTGTTGCCAGTGG+TGG + chr2_4:44470177-44470196 Msa0330240:CDS 45.0%
CTTAATCTTCTTGCCACCAC+TGG - chr2_4:44470193-44470212 None:intergenic 45.0%
! AGCATCTTTTCCATCTGGCA+AGG - chr2_4:44470393-44470412 None:intergenic 45.0%
!!! CCAGAAGCATCTTTTCCATC+TGG - chr2_4:44470398-44470417 None:intergenic 45.0%
CCAGATGGAAAAGATGCTTC+TGG + chr2_4:44470395-44470414 Msa0330240:CDS 45.0%
ATGGAAAAGATGCTTCTGGC+AGG + chr2_4:44470399-44470418 Msa0330240:CDS 45.0%
TGCTTCTGGCAGGAAACAAA+AGG + chr2_4:44470409-44470428 Msa0330240:CDS 45.0%
TATTTCCATGGGAACACCAG+AGG + chr2_4:44470654-44470673 Msa0330240:intron 45.0%
TTAATCCTCTGGTGTTCCCA+TGG - chr2_4:44470662-44470681 None:intergenic 45.0%
CACCGTATTTGTCCACAAAC+TGG - chr2_4:44471305-44471324 None:intergenic 45.0%
AGTCCTTTGGGTCGTAGATA+GGG - chr2_4:44471742-44471761 None:intergenic 45.0%
! GGAATCGTCTATCACTGGTT+CGG + chr2_4:44471936-44471955 Msa0330240:intron 45.0%
CAAACAAACTCCACCGAGAT+CGG + chr2_4:44472862-44472881 Msa0330240:three_prime_UTR 45.0%
!! ATTTTAACCTCCGATCTCGG+TGG - chr2_4:44472875-44472894 None:intergenic 45.0%
!! TCTTTTGCTGACTGAGGTTG+AGG - chr2_4:44472941-44472960 None:intergenic 45.0%
GAGGACTACCTACCCTTTCA+AGG + chr2_4:44470151-44470170 Msa0330240:CDS 50.0%
TTGAAGGGCCTTGAAAGGGT+AGG - chr2_4:44470162-44470181 None:intergenic 50.0%
CCCTTCAAAGTTGTTGCCAG+TGG + chr2_4:44470174-44470193 Msa0330240:CDS 50.0%
TTTAGGAACTGGAGGTGGCA+TGG + chr2_4:44470367-44470386 Msa0330240:intron 50.0%
CAGTCCTTTGGGTCGTAGAT+AGG - chr2_4:44471743-44471762 None:intergenic 50.0%
CTATCTACGACCCAAAGGAC+TGG + chr2_4:44471741-44471760 Msa0330240:CDS 50.0%
ACCTCCAGTGTAGACATCAC+CGG - chr2_4:44471774-44471793 None:intergenic 50.0%
ATCTGGGCAGTAACTCTAGC+TGG + chr2_4:44472368-44472387 Msa0330240:CDS 50.0%
!! ACTCTAGCTGGTCTTCTAGC+TGG + chr2_4:44472380-44472399 Msa0330240:CDS 50.0%
GGTGAAGCCATAGAGATGCA+TGG - chr2_4:44472594-44472613 None:intergenic 50.0%
AATACACCCGCGATCCCATT+AGG + chr2_4:44473140-44473159 Msa0330240:three_prime_UTR 50.0%
CAGCCCTATCTACGACCCAA+AGG + chr2_4:44471736-44471755 Msa0330240:intron 55.0%
CGGTTGGAGACCAGTCCTTT+GGG - chr2_4:44471754-44471773 None:intergenic 55.0%
!! CCAAAGGACTGGTCTCCAAC+CGG + chr2_4:44471752-44471771 Msa0330240:CDS 55.0%
CCAGTGTAGACATCACCGGT+TGG - chr2_4:44471770-44471789 None:intergenic 55.0%
CCAACCGGTGATGTCTACAC+TGG + chr2_4:44471767-44471786 Msa0330240:CDS 55.0%
ACCGGTGATGTCTACACTGG+AGG + chr2_4:44471770-44471789 Msa0330240:CDS 55.0%
! AATTGCAGGTCCGACTGGCT+TGG + chr2_4:44472343-44472362 Msa0330240:intron 55.0%
!! TCCGACTGGCTTGGCTATCT+GGG + chr2_4:44472352-44472371 Msa0330240:CDS 55.0%
!! CTAGCTGGTCTTCTAGCTGG+TGG + chr2_4:44472383-44472402 Msa0330240:CDS 55.0%
ACAAACTCCACCGAGATCGG+AGG + chr2_4:44472865-44472884 Msa0330240:three_prime_UTR 55.0%
CCGGTTGGAGACCAGTCCTT+TGG - chr2_4:44471755-44471774 None:intergenic 60.0%
!! GTCCGACTGGCTTGGCTATC+TGG + chr2_4:44472351-44472370 Msa0330240:CDS 60.0%
GCCCAGATAGCCAAGCCAGT+CGG - chr2_4:44472356-44472375 None:intergenic 60.0%
! GGTGGCATGGCCTTGCCAGA+TGG + chr2_4:44470380-44470399 Msa0330240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 44469963 44473177 44469963 ID=Msa0330240;Name=Msa0330240
chr2_4 mRNA 44469963 44473177 44469963 ID=Msa0330240-mRNA-1;Parent=Msa0330240;Name=Msa0330240-mRNA-1;_AED=0.15;_eAED=0.15;_QI=112|1|1|1|1|1|5|732|138
chr2_4 exon 44469963 44470228 44469963 ID=Msa0330240-mRNA-1:exon:13528;Parent=Msa0330240-mRNA-1
chr2_4 exon 44470372 44470430 44470372 ID=Msa0330240-mRNA-1:exon:13529;Parent=Msa0330240-mRNA-1
chr2_4 exon 44471288 44471343 44471288 ID=Msa0330240-mRNA-1:exon:13530;Parent=Msa0330240-mRNA-1
chr2_4 exon 44471739 44471791 44471739 ID=Msa0330240-mRNA-1:exon:13531;Parent=Msa0330240-mRNA-1
chr2_4 exon 44472351 44473177 44472351 ID=Msa0330240-mRNA-1:exon:13532;Parent=Msa0330240-mRNA-1
chr2_4 five_prime_UTR 44469963 44470074 44469963 ID=Msa0330240-mRNA-1:five_prime_utr;Parent=Msa0330240-mRNA-1
chr2_4 CDS 44470075 44470228 44470075 ID=Msa0330240-mRNA-1:cds;Parent=Msa0330240-mRNA-1
chr2_4 CDS 44470372 44470430 44470372 ID=Msa0330240-mRNA-1:cds;Parent=Msa0330240-mRNA-1
chr2_4 CDS 44471288 44471343 44471288 ID=Msa0330240-mRNA-1:cds;Parent=Msa0330240-mRNA-1
chr2_4 CDS 44471739 44471791 44471739 ID=Msa0330240-mRNA-1:cds;Parent=Msa0330240-mRNA-1
chr2_4 CDS 44472351 44472445 44472351 ID=Msa0330240-mRNA-1:cds;Parent=Msa0330240-mRNA-1
chr2_4 three_prime_UTR 44472446 44473177 44472446 ID=Msa0330240-mRNA-1:three_prime_utr;Parent=Msa0330240-mRNA-1
Gene Sequence

>Msa0330240

ATGGCATCTTCAGTTATGGCTTCTGTGAGTTTGAAACCAACTCCTTTCAGTTTCACTGTTGAGAAATCTTCAGTTAGAGGACTACCTACCCTTTCAAGGCCCTTCAAAGTTGTTGCCAGTGGTGGCAAGAAGATTAAGACTGACACACCTTATGGAACTGGAGGTGGCATGGCCTTGCCAGATGGAAAAGATGCTTCTGGCAGGAAACAAAAGGGAAAGGGTGTTTACCAGTTTGTGGACAAATACGGTGCTAATGTTGATGGATACAGCCCTATCTACGACCCAAAGGACTGGTCTCCAACCGGTGATGTCTACACTGGAGGTCCGACTGGCTTGGCTATCTGGGCAGTAACTCTAGCTGGTCTTCTAGCTGGTGGTGCACTCCTTGTCTACAACACAAGTGCTTTGTCACAATAG

Protein sequence

>Msa0330240

MASSVMASVSLKPTPFSFTVEKSSVRGLPTLSRPFKVVASGGKKIKTDTPYGTGGGMALPDGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYDPKDWSPTGDVYTGGPTGLAIWAVTLAGLLAGGALLVYNTSALSQ*