AlfalfaGEDB | Msa0532750

M. sativa cultivar zhongmu-4 / Msa0532750

KEGG: K07071
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840
PFAM: PF01370.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532750	XP_003607078.1	92.251	271	6	1	1	256	1	271	1.56e-179	508

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532750	sp\|Q9SJU9\|GC1_ARATH	74.583	240	43	2	32	256	32	268	3.52e-124	360

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532750	G7JJX2	92.251	271	6	1	1	256	1	271	7.45e-180	508

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa0532750	0.804985	1.660911e-49	-8.615850e-47
Msa0002690	Msa0532750	0.845023	5.258435e-59	-8.615850e-47
Msa0002700	Msa0532750	0.840556	8.099078e-58	-8.615850e-47
Msa0004180	Msa0532750	0.835720	1.423535e-56	-8.615850e-47
Msa0005190	Msa0532750	0.816594	5.101620e-52	-8.615850e-47
Msa0007570	Msa0532750	0.829052	6.388006e-55	-8.615850e-47
Msa0007810	Msa0532750	0.804381	2.219753e-49	-8.615850e-47
Msa0008700	Msa0532750	0.839143	1.890377e-57	-8.615850e-47
Msa0011100	Msa0532750	0.809504	1.831031e-50	-8.615850e-47
Msa0014970	Msa0532750	0.805442	1.332053e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532750	MtrunA17_Chr4g0036031	92.251	271	6	1	1	256	1	271	0.0	508

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0532750	AT2G21280.1	74.583	240	43	2	32	256	32	268	3.58e-125	360
Msa0532750	AT2G21280.2	74.583	240	43	2	32	256	47	283	4.41e-125	360

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Find 136 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGCACAAGAATGAC+AGG	0.552676	4_1:+7298704	None:intergenic
AAGGTGAAGAGAAGGAGAGA+CGG	0.542928	4_1:+7303771	None:intergenic
AAGTACCAGATGGTCTTCTG+AGG	0.661589	4_1:-7301686	Msa0532750:intron
AATAACCTCAGAAGACCATC+TGG	0.519010	4_1:+7301681	None:intergenic
AATAGTTTACCTTTGTAGGA+TGG	0.497739	4_1:+7299782	None:intergenic
AATGCCACTGACATGTTGGA+AGG	0.613399	4_1:+7298880	None:intergenic
AATGTCATCCAGATGAATCC+AGG	0.554187	4_1:+7299835	None:intergenic
AATTGAAACTTACAAAGAGG+AGG	0.598172	4_1:+7303740	None:intergenic
ACAAAAGTGGCCAAACTCAA+TGG	0.547289	4_1:+7298730	None:intergenic
ACAGCCTTGAGTGCAAAGTC+AGG	0.498905	4_1:+7299178	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAAACTTACAAAGAGGA+GGG	+	chr4_1:7298727-7298746	None:intergenic	30.0%
AATTGAAACTTACAAAGAGG+AGG	+	chr4_1:7298728-7298747	None:intergenic	30.0%
CCAAATTATAGAACATACCT+TGG	+	chr4_1:7299001-7299020	None:intergenic	30.0%
CCAAGGTATGTTCTATAATT+TGG	-	chr4_1:7298998-7299017	Msa0532750:three_prime_UTR	30.0%
TTTGGATAAAATGTTGGACA+AGG	-	chr4_1:7299338-7299357	Msa0532750:three_prime_UTR	30.0%
CAAATGATCATATCTGTAAC+TGG	-	chr4_1:7299901-7299920	Msa0532750:intron	30.0%
CACATGATGCAAATATTTAC+CGG	+	chr4_1:7300206-7300225	None:intergenic	30.0%
ATTTAACTGAGTAAGCTTTG+AGG	+	chr4_1:7300611-7300630	None:intergenic	30.0%
TGAATACAATCTTTCCATTC+TGG	+	chr4_1:7300720-7300739	None:intergenic	30.0%
AGAATGGAAAGATTGTATTC+AGG	-	chr4_1:7300719-7300738	Msa0532750:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	7298484	7304003	7298484	ID=Msa0532750;Name=Msa0532750
chr4_1	mRNA	7298484	7304003	7298484	ID=Msa0532750-mRNA-1;Parent=Msa0532750;Name=Msa0532750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=170\|0.90\|0.91\|1\|0.90\|0.83\|12\|1169\|271
chr4_1	exon	7298484	7299066	7298484	ID=Msa0532750-mRNA-1:exon:2541;Parent=Msa0532750-mRNA-1
chr4_1	exon	7299156	7299862	7299156	ID=Msa0532750-mRNA-1:exon:2540;Parent=Msa0532750-mRNA-1
chr4_1	exon	7300139	7300154	7300139	ID=Msa0532750-mRNA-1:exon:2539;Parent=Msa0532750-mRNA-1
chr4_1	exon	7300437	7300539	7300437	ID=Msa0532750-mRNA-1:exon:2538;Parent=Msa0532750-mRNA-1
chr4_1	exon	7301033	7301094	7301033	ID=Msa0532750-mRNA-1:exon:2537;Parent=Msa0532750-mRNA-1
chr4_1	exon	7301289	7301367	7301289	ID=Msa0532750-mRNA-1:exon:2536;Parent=Msa0532750-mRNA-1
chr4_1	exon	7301543	7301587	7301543	ID=Msa0532750-mRNA-1:exon:2535;Parent=Msa0532750-mRNA-1
chr4_1	exon	7301687	7301805	7301687	ID=Msa0532750-mRNA-1:exon:2534;Parent=Msa0532750-mRNA-1
chr4_1	exon	7302064	7302123	7302064	ID=Msa0532750-mRNA-1:exon:2533;Parent=Msa0532750-mRNA-1
chr4_1	exon	7302517	7302592	7302517	ID=Msa0532750-mRNA-1:exon:2532;Parent=Msa0532750-mRNA-1
chr4_1	exon	7303485	7303538	7303485	ID=Msa0532750-mRNA-1:exon:2531;Parent=Msa0532750-mRNA-1
chr4_1	exon	7303753	7304003	7303753	ID=Msa0532750-mRNA-1:exon:2530;Parent=Msa0532750-mRNA-1
chr4_1	five_prime_UTR	7303834	7304003	7303834	ID=Msa0532750-mRNA-1:five_prime_utr;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7303753	7303833	7303753	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7303485	7303538	7303485	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7302517	7302592	7302517	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7302064	7302123	7302064	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7301687	7301805	7301687	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7301543	7301587	7301543	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7301289	7301367	7301289	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7301033	7301094	7301033	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7300437	7300539	7300437	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7300139	7300154	7300139	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	CDS	7299742	7299862	7299742	ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1	three_prime_UTR	7299156	7299741	7299156	ID=Msa0532750-mRNA-1:three_prime_utr;Parent=Msa0532750-mRNA-1
chr4_1	three_prime_UTR	7298484	7299066	7298484	ID=Msa0532750-mRNA-1:three_prime_utr;Parent=Msa0532750-mRNA-1

Gene Sequence

>Msa0532750

ATGGAAATCAGTAGAGCTACAGCTCTCACTTGGTCTCATACCGTCTCTCCTTCTCTTCACCTTCCTCAACCCCTCCTCTTTACCAGAGAGGCTAGGAGGTTCAGAGTTTGGTGTGACACTGATCAAGGCTCCAAGGGAGATCAAATGATCATATCTGTAACTGGAGCAACAGGTTTTATAGGTAAAAGATTGGTGCAAAAGCTGCAAGCAGAAAATCACAGAGTTCATGTCCTGACACGCTCTAAATCTAAAGCAGAACTAATTTTTCCGGTGAAAGACTTTCCAGGAGTCAAGATTGCAGGGGAACCAGAATGGAAAGATTGTATTCAGGGTTCAACAGGAGTTGTGAATTTGGCCGGATTGCCGATAAGTACCAGATGGTCTTCTGAGGTAAAGAAAGAAATCAAGCAGAGCAGGGTTAGAGTGACCTCAAAAGTTGTAGATTTGATAAAAAGGGCACCAGATGAAACTCGACCCAAAGTTTTGGTTAGTGCAACAGCTGTTGGTTATTATGGCACCAGTGAGACACAAGTCTTTGATGAACAAAGTCCATCAGGAAAGGATTATCTGGCTGAGGTTTGCAGAGAATGGGAATCAACGGCGCTAAAGGCTAATGGAGATGTTAGAGTGGCTCTAATTCGCATCGGTGTTGTTCTTGGTAAAGATGGTGGAGCATTAGGCTCTGGAAATCAATGGTTCTCCTGGATTCATCTGGATGACATTGTCAATTTAATATACGAAGCACTATCAAATCCATCCTACAAAGGTAAACTATTCACTTCCATATCAGAGAAAACAGGACTGTCAAATTCATAA

Protein sequence

>Msa0532750

MEISRATALTWSHTVSPSLHLPQPLLFTREARRFRVWCDTDQGSKGDQMIISVTGATGFIGKRLVQKLQAENHRVHVLTRSKSKAELIFPVKDFPGVKIAGEPEWKDCIQGSTGVVNLAGLPISTRWSSEVKKEIKQSRVRVTSKVVDLIKRAPDETRPKVLVSATAVGYYGTSETQVFDEQSPSGKDYLAEVCREWESTALKANGDVRVALIRIGVVLGKDGGALGSGNQWFSWIHLDDIVNLIYEALSNPSYKGKLFTSISEKTGLSNS*