AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532750 MtrunA17_Chr4g0036031 92.251 271 6 1 1 256 1 271 0.0 508
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532750 AT2G21280.1 74.583 240 43 2 32 256 32 268 3.58e-125 360
Msa0532750 AT2G21280.2 74.583 240 43 2 32 256 47 283 4.41e-125 360

Find 136 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGAAATAATTGCTTTA+AGG 0.095577 4_1:+7298964 None:intergenic
ATTAACTGGTGCCTGGAATT+TGG 0.192009 4_1:-7299322 Msa0532750:three_prime_UTR
GCAACAGCTGTTGGTTATTA+TGG 0.218240 4_1:-7301288 Msa0532750:intron
TGTTTATGAATCTTTGTATT+AGG 0.227706 4_1:-7299295 Msa0532750:three_prime_UTR
TGGTTTCTTCGTGGTTAATT+TGG 0.243842 4_1:+7303958 None:intergenic
ATGTCATATTCTTTATTCTT+TGG 0.250448 4_1:-7298923 Msa0532750:three_prime_UTR
GAATGAGAAACCCAGCTTCT+TGG 0.260914 4_1:+7299010 None:intergenic
TTCAACAGGAGTTGTGAATT+TGG 0.265572 4_1:-7301722 Msa0532750:CDS
TGAATACAATCTTTCCATTC+TGG 0.270270 4_1:+7301748 None:intergenic
TCAAGAAATAATTGCTTTAA+GGG 0.286542 4_1:+7298965 None:intergenic
CGAACAGCTGGGAAATGTTT+TGG 0.287512 4_1:-7299224 Msa0532750:three_prime_UTR
AGGTTGTAGATTTGATAAAA+AGG 0.289421 4_1:-7301347 Msa0532750:CDS
ATAACTTAGTCTTGATTAAC+TGG 0.291144 4_1:-7299336 Msa0532750:three_prime_UTR
ATGCACTAAACTTAATTTGC+AGG 0.299769 4_1:+7298574 None:intergenic
TATTCTTTATTCTTTGGAAT+TGG 0.299844 4_1:-7298917 Msa0532750:three_prime_UTR
TTTGCACTCAAGGCTGTTCT+TGG 0.310048 4_1:-7299172 Msa0532750:three_prime_UTR
TATTCTTCTGCCATTGAGTT+TGG 0.313578 4_1:-7298740 Msa0532750:three_prime_UTR
TCGGACAGTCGCACGGGATT+TGG 0.324179 4_1:+7299253 None:intergenic
ATTCGCATCGGTGTTGTTCT+TGG 0.330353 4_1:-7300457 Msa0532750:CDS
CATTCATTTGTGCTCCATAA+TGG 0.341940 4_1:+7299620 None:intergenic
AGTGAATAGTTTACCTTTGT+AGG 0.347670 4_1:+7299778 None:intergenic
ATGAATGATTTGATGAGTTT+AGG 0.355754 4_1:-7299604 Msa0532750:three_prime_UTR
TGAAACTCGACCCAAAGTTT+TGG 0.356246 4_1:-7301316 Msa0532750:CDS
GTCCGAATTGTGCGAACAGC+TGG 0.359974 4_1:-7299236 Msa0532750:three_prime_UTR
AGGCTAGGAGGTTCAGAGTT+TGG 0.361453 4_1:-7303509 Msa0532750:CDS
ATAGCAAAAGATTAATCTTA+TGG 0.363791 4_1:-7303830 Msa0532750:exon
GGTAAAGATGGTGGAGCATT+AGG 0.364438 4_1:-7300436 Msa0532750:intron
TGATGAGTTTAGGCCATGTT+TGG 0.373776 4_1:-7299594 Msa0532750:three_prime_UTR
CTTTAGATTTAGAGCGTGTC+AGG 0.375570 4_1:+7302082 None:intergenic
TCCATCAGGAAAGGATTATC+TGG 0.378597 4_1:-7301038 Msa0532750:CDS
TCTTTCTTCAAATTGACAAT+AGG 0.382025 4_1:-7298818 Msa0532750:three_prime_UTR
GATTGTATTCAGGGTTCAAC+AGG 0.387898 4_1:-7301736 Msa0532750:CDS
CAAATGATCATATCTGTAAC+TGG 0.388348 4_1:-7302564 Msa0532750:CDS
AGAATGGAAAGATTGTATTC+AGG 0.393704 4_1:-7301746 Msa0532750:CDS
CGGGCAAGTTGACGGGGAAA+TGG 0.397716 4_1:+7299678 None:intergenic
TGTTGCACTAACCAAAACTT+TGG 0.399793 4_1:+7301305 None:intergenic
TCATTGAGATTATTCTTGTA+TGG 0.400953 4_1:+7303938 None:intergenic
GAAGACCATCTGGTACTTAT+CGG 0.402363 4_1:+7301691 None:intergenic
TTTCCAGGAGTCAAGATTGC+AGG 0.404234 4_1:-7301775 Msa0532750:CDS
TCCCAGCTGTTCGCACAATT+CGG 0.406560 4_1:+7299234 None:intergenic
GCAAGCGCGGGCAAGTTGAC+GGG 0.417643 4_1:+7299671 None:intergenic
CAGGTTCTCCTGGATTCATC+TGG 0.421588 4_1:-7299843 Msa0532750:CDS
GAATGGAAAGATTGTATTCA+GGG 0.421699 4_1:-7301745 Msa0532750:CDS
GGCAAGCGCGGGCAAGTTGA+CGG 0.423868 4_1:+7299670 None:intergenic
TCCCCTGCAATCTTGACTCC+TGG 0.430807 4_1:+7301772 None:intergenic
TCAACGGCGCTAAAGGCTAA+TGG 0.436080 4_1:-7300499 Msa0532750:CDS
ATATCTGTAACTGGAGCAAC+AGG 0.436339 4_1:-7302555 Msa0532750:CDS
AGAAAGAAATCAAGCAGAGC+AGG 0.436371 4_1:-7301561 Msa0532750:CDS
TTTGTATTAGGTGTTATCAA+TGG 0.439150 4_1:-7299283 Msa0532750:three_prime_UTR
ACAGTGATATACTACCATTA+TGG 0.443020 4_1:-7299634 Msa0532750:three_prime_UTR
GCTGTCTTCAAAAGCTATCC+TGG 0.444284 4_1:-7299479 Msa0532750:three_prime_UTR
GGGTCGTCCCTCATGGCTGC+CGG 0.447733 4_1:-7299203 Msa0532750:three_prime_UTR
ACTTTGGGTCGAGTTTCATC+TGG 0.454504 4_1:+7301321 None:intergenic
TCCTACTCAAGCCAAGAAGC+TGG 0.458174 4_1:-7299021 Msa0532750:three_prime_UTR
ATAAACATGATCCAAATTCC+AGG 0.458615 4_1:+7299311 None:intergenic
TTTCCAGTGAAAGACTTTCC+AGG 0.460284 4_1:-7301790 Msa0532750:intron
TCTGAACCTCCTAGCCTCTC+TGG 0.462277 4_1:+7303515 None:intergenic
GGTTGAGGAAGGTGAAGAGA+AGG 0.463816 4_1:+7303763 None:intergenic
ATCAAAGACTTGTGTCTCAC+TGG 0.467847 4_1:+7301069 None:intergenic
TACATAAATACTAACATGAC+AGG 0.475006 4_1:+7299559 None:intergenic
GGTGCCTGACTTTGCACTCA+AGG 0.476036 4_1:-7299182 Msa0532750:three_prime_UTR
ATGGGAATCAACGGCGCTAA+AGG 0.476364 4_1:-7300506 Msa0532750:CDS
TTTGATGAACAAAGTCCATC+AGG 0.481117 4_1:-7301052 Msa0532750:CDS
AGTCTTGATTAACTGGTGCC+TGG 0.490156 4_1:-7299329 Msa0532750:three_prime_UTR
AATAGTTTACCTTTGTAGGA+TGG 0.497739 4_1:+7299782 None:intergenic
TCTGGTACTTATCGGCAATC+CGG 0.498322 4_1:+7301699 None:intergenic
TGTAAAGCGCGGGCAAGCGC+GGG 0.498353 4_1:+7299659 None:intergenic
ACAGCCTTGAGTGCAAAGTC+AGG 0.498905 4_1:+7299178 None:intergenic
GTGTAAAGCGCGGGCAAGCG+CGG 0.504494 4_1:+7299658 None:intergenic
GTTGCACTAACCAAAACTTT+GGG 0.504995 4_1:+7301306 None:intergenic
ACAGGAGTTGTGAATTTGGC+CGG 0.506650 4_1:-7301718 Msa0532750:CDS
CTCAAGGCTGTTCTTGGAGA+AGG 0.507833 4_1:-7299166 Msa0532750:three_prime_UTR
ACTTCCATATCAGAGAAAAC+AGG 0.515212 4_1:-7299758 Msa0532750:CDS
AATAACCTCAGAAGACCATC+TGG 0.519010 4_1:+7301681 None:intergenic
CACAATTCGGACAGTCGCAC+GGG 0.519157 4_1:+7299247 None:intergenic
ATTCTTGTATGGTTTCTTCG+TGG 0.522476 4_1:+7303949 None:intergenic
AGATTGCAGGGGAACCAGAA+TGG 0.527962 4_1:-7301762 Msa0532750:CDS
TCAGGCACCGGCAGCCATGA+GGG 0.532338 4_1:+7299196 None:intergenic
TTGGTTAGTGCAACAGCTGT+TGG 0.534466 4_1:-7301297 Msa0532750:CDS
ATAAGTGGTGGATATGGAAA+TGG 0.535178 4_1:-7303995 None:intergenic
TATGGAAATGGTGGTTGTTG+TGG 0.542627 4_1:-7303983 Msa0532750:five_prime_UTR
AAGGTGAAGAGAAGGAGAGA+CGG 0.542928 4_1:+7303771 None:intergenic
GCCAGATAATCCTTTCCTGA+TGG 0.543384 4_1:+7301037 None:intergenic
CTCTAGGCTCTGGAAATCAA+TGG 0.544607 4_1:-7300138 Msa0532750:intron
CTTACAAAGAGGAGGGGTTG+AGG 0.546078 4_1:+7303748 None:intergenic
CCTACTCAAGCCAAGAAGCT+GGG 0.546377 4_1:-7299020 Msa0532750:three_prime_UTR
ACAAAAGTGGCCAAACTCAA+TGG 0.547289 4_1:+7298730 None:intergenic
GGTGTTGTTCTTGGTAAAGA+TGG 0.549228 4_1:-7300448 Msa0532750:CDS
TTGAGTGCAAAGTCAGGCAC+CGG 0.549528 4_1:+7299184 None:intergenic
TTCCAGGAGTCAAGATTGCA+GGG 0.551258 4_1:-7301774 Msa0532750:CDS
AAACTTGGCACAAGAATGAC+AGG 0.552676 4_1:+7298704 None:intergenic
AATGTCATCCAGATGAATCC+AGG 0.554187 4_1:+7299835 None:intergenic
GTTTGGTGTGACACTGATCA+AGG 0.555857 4_1:-7303492 Msa0532750:CDS
CAAGCGCGGGCAAGTTGACG+GGG 0.558730 4_1:+7299672 None:intergenic
ATTGAAACTTACAAAGAGGA+GGG 0.571016 4_1:+7303741 None:intergenic
GAAAGAAATCAAGCAGAGCA+GGG 0.571813 4_1:-7301560 Msa0532750:CDS
GTAGAGCTACAGCTCTCACT+TGG 0.575595 4_1:-7303801 Msa0532750:CDS
GAATGACAGGTGGACAAAAG+TGG 0.577331 4_1:+7298717 None:intergenic
TTTACTAGACCAGAGAGGCT+AGG 0.580323 4_1:-7303524 Msa0532750:intron
AGGAAAGGATTATCTGGCTG+AGG 0.580461 4_1:-7301032 Msa0532750:intron
TTGGTGCAAAAGCTGCAAGC+AGG 0.582005 4_1:-7302516 Msa0532750:intron
CAAAGAGGAGGGGTTGAGGA+AGG 0.589876 4_1:+7303752 None:intergenic
ATTCAAATATTCATATGTGA+AGG 0.592790 4_1:-7298991 Msa0532750:three_prime_UTR
TCCGAATTGTGCGAACAGCT+GGG 0.594868 4_1:-7299235 Msa0532750:three_prime_UTR
AATTGAAACTTACAAAGAGG+AGG 0.598172 4_1:+7303740 None:intergenic
ATCACTGTAGTGTAAAGCGC+GGG 0.598437 4_1:+7299649 None:intergenic
TCAATGGCAGAAGAATATAG+AGG 0.600057 4_1:+7298746 None:intergenic
AGTGGTGGATATGGAAATGG+TGG 0.602083 4_1:-7303992 None:intergenic
TTGCAGAGAATGGGAATCAA+CGG 0.604714 4_1:-7300515 Msa0532750:CDS
GCACAATTCGGACAGTCGCA+CGG 0.605041 4_1:+7299246 None:intergenic
TGAACAAAGTCCATCAGGAA+AGG 0.605642 4_1:-7301047 Msa0532750:CDS
GTCAGGCACCGGCAGCCATG+AGG 0.608739 4_1:+7299195 None:intergenic
TGACACTGATCAAGGCTCCA+AGG 0.608870 4_1:-7303484 Msa0532750:intron
ACTAGACCAGAGAGGCTAGG+AGG 0.612928 4_1:-7303521 Msa0532750:intron
AATGCCACTGACATGTTGGA+AGG 0.613399 4_1:+7298880 None:intergenic
ATGTCAGTGGCATTCATCAA+CGG 0.614254 4_1:-7298871 Msa0532750:three_prime_UTR
GTTGTTCTTGGTAAAGATGG+TGG 0.616711 4_1:-7300445 Msa0532750:CDS
GGAAATAAATTATCCAAACA+TGG 0.617826 4_1:+7299581 None:intergenic
CCCAGCTTCTTGGCTTGAGT+AGG 0.629518 4_1:+7299020 None:intergenic
GATGAATGCCACTGACATGT+TGG 0.633783 4_1:+7298876 None:intergenic
CAACCCTTCCAACATGTCAG+TGG 0.637551 4_1:-7298884 Msa0532750:three_prime_UTR
GGCTAATGGAGATGTTAGAG+TGG 0.643529 4_1:-7300485 Msa0532750:CDS
CTATCAAATCCATCCTACAA+AGG 0.644854 4_1:-7299791 Msa0532750:CDS
AGAGTGGCTCTAATTCGCAT+CGG 0.649797 4_1:-7300469 Msa0532750:CDS
TTGAAACTTACAAAGAGGAG+GGG 0.652849 4_1:+7303742 None:intergenic
GATTGCCGATAAGTACCAGA+TGG 0.655738 4_1:-7301696 Msa0532750:CDS
TATCACTGTAGTGTAAAGCG+CGG 0.656628 4_1:+7299648 None:intergenic
AAGTACCAGATGGTCTTCTG+AGG 0.661589 4_1:-7301686 Msa0532750:intron
ATGTTGGAAGGGTTGATGCA+AGG 0.664486 4_1:+7298892 None:intergenic
ACATAAATACTAACATGACA+GGG 0.666719 4_1:+7299560 None:intergenic
TCTTGGAGAAGGTGCTACTG+TGG 0.672114 4_1:-7299155 Msa0532750:intron
TGTTGCTGAGAATTAACAAG+AGG 0.676253 4_1:-7303891 Msa0532750:five_prime_UTR
TCCAGGAGTCAAGATTGCAG+GGG 0.681901 4_1:-7301773 Msa0532750:CDS
ATGCCACTGACATGTTGGAA+GGG 0.683373 4_1:+7298881 None:intergenic
GTTGCTGAGAATTAACAAGA+GGG 0.684708 4_1:-7303890 Msa0532750:five_prime_UTR
CTTGGCACAAGAATGACAGG+TGG 0.700422 4_1:+7298707 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTAAAATAAAATTTT+AGG - chr4_1:7302746-7302765 Msa0532750:intron 0.0%
!!! TTTTTTTTTTTTTTTTTGCA+TGG + chr4_1:7301694-7301713 None:intergenic 10.0%
!!! TAATATTTTGGATAAAATGT+TGG - chr4_1:7299332-7299351 Msa0532750:three_prime_UTR 15.0%
!! AAAATCATGTTTAAATAGTA+TGG - chr4_1:7299454-7299473 Msa0532750:three_prime_UTR 15.0%
!!! GTTCCAATTAAATATTTTAT+TGG - chr4_1:7299560-7299579 Msa0532750:three_prime_UTR 15.0%
!! ATTTATTTGTTTATCATAGA+AGG - chr4_1:7300086-7300105 Msa0532750:intron 15.0%
!!! TATATATTTTGAAACATAAG+AGG + chr4_1:7300149-7300168 None:intergenic 15.0%
!! AGAATTCAAATGATATAAAT+AGG + chr4_1:7300286-7300305 None:intergenic 15.0%
!!! TTTTGATCTTTTGAAAAAAT+TGG + chr4_1:7300506-7300525 None:intergenic 15.0%
!! ATAGCAAAAGATTAATCTTA+TGG - chr4_1:7298635-7298654 Msa0532750:three_prime_UTR 20.0%
!!! AGTTTCAATTTTCATTTTCT+CGG - chr4_1:7298738-7298757 Msa0532750:three_prime_UTR 20.0%
!! AAAAATACAATGATTGATCA+CGG - chr4_1:7299263-7299282 Msa0532750:three_prime_UTR 20.0%
!!! TGAGGTGAAATTTAATATTT+TGG - chr4_1:7299320-7299339 Msa0532750:three_prime_UTR 20.0%
!! TAATTAGTCAAAGTTTAAAG+AGG + chr4_1:7299395-7299414 None:intergenic 20.0%
!! CAGCCAATAAAATATTTAAT+TGG + chr4_1:7299566-7299585 None:intergenic 20.0%
!!! TGAGGCAAAATTTAATATTT+TGG + chr4_1:7299739-7299758 None:intergenic 20.0%
!!! TTATCTCTGGTTTTTATTAT+TGG - chr4_1:7299826-7299845 Msa0532750:CDS 20.0%
!! GTATAAATGTACTAAAAAAC+GGG + chr4_1:7300035-7300054 None:intergenic 20.0%
!! GGTATAAATGTACTAAAAAA+CGG + chr4_1:7300036-7300055 None:intergenic 20.0%
!! TTAATCGGTTAATTCTTAAT+TGG - chr4_1:7300650-7300669 Msa0532750:intron 20.0%
!! TTAAATAATATTCCCTCAAT+TGG + chr4_1:7300961-7300980 None:intergenic 20.0%
!! AATTCAATTTACTAATGTCA+TGG - chr4_1:7302520-7302539 Msa0532750:CDS 20.0%
!! TGTTTATGAATCTTTGTATT+AGG - chr4_1:7303170-7303189 Msa0532750:intron 20.0%
!! TCAAGAAATAATTGCTTTAA+GGG + chr4_1:7303503-7303522 None:intergenic 20.0%
!! TTCAAGAAATAATTGCTTTA+AGG + chr4_1:7303504-7303523 None:intergenic 20.0%
!! ATGTCATATTCTTTATTCTT+TGG - chr4_1:7303542-7303561 Msa0532750:intron 20.0%
!!! TATTCTTTATTCTTTGGAAT+TGG - chr4_1:7303548-7303567 Msa0532750:intron 20.0%
! TCATTGAGATTATTCTTGTA+TGG + chr4_1:7298530-7298549 None:intergenic 25.0%
! GAAAATTGAAACTTACAAAG+AGG + chr4_1:7298731-7298750 None:intergenic 25.0%
! GAAAAGAAGTCAAATCAAAT+GGG + chr4_1:7299029-7299048 None:intergenic 25.0%
! TGAAAAGAAGTCAAATCAAA+TGG + chr4_1:7299030-7299049 None:intergenic 25.0%
!! TAAAGTTTTACTTCATGCTA+AGG - chr4_1:7299062-7299081 Msa0532750:intron 25.0%
!! ATTCATATTCGGTGATAAAT+GGG + chr4_1:7299527-7299546 None:intergenic 25.0%
! TGTTGAGTATGATTCATATT+CGG + chr4_1:7299538-7299557 None:intergenic 25.0%
! TTGGCTAATAATCTATTGTA+AGG + chr4_1:7299656-7299675 None:intergenic 25.0%
! ATTATTAGCCAAGTATAAAG+AGG - chr4_1:7299664-7299683 Msa0532750:three_prime_UTR 25.0%
! AAATGTTCAAAGTTTATCTC+TGG - chr4_1:7299813-7299832 Msa0532750:CDS 25.0%
!!! AGGTTTTATAGGTAAAAGAT+TGG - chr4_1:7299930-7299949 Msa0532750:intron 25.0%
! ATTATGAAGCAAATGTAGAA+AGG + chr4_1:7300007-7300026 None:intergenic 25.0%
!!! ATGATATATATGAGAGCATT+GGG + chr4_1:7300068-7300087 None:intergenic 25.0%
!! AATGATATATATGAGAGCAT+TGG + chr4_1:7300069-7300088 None:intergenic 25.0%
! ATATAACGTTATAGATTTCG+AGG - chr4_1:7300164-7300183 Msa0532750:intron 25.0%
!! TAAAGCAGAACTAATTTTTC+CGG - chr4_1:7300401-7300420 Msa0532750:intron 25.0%
! TAATATATTACCTTCTTACC+CGG + chr4_1:7300423-7300442 None:intergenic 25.0%
! GATAAAGGTAAGTTAGATTT+AGG + chr4_1:7300534-7300553 None:intergenic 25.0%
! ATATGGTGCTTATAAGATAA+AGG + chr4_1:7300549-7300568 None:intergenic 25.0%
! ATACTCCACTCTAAATTAAT+CGG - chr4_1:7300635-7300654 Msa0532750:intron 25.0%
! ATTAACCGATTAATTTAGAG+TGG + chr4_1:7300643-7300662 None:intergenic 25.0%
! ATTTATTCATTTCATTGCGA+AGG - chr4_1:7301098-7301117 Msa0532750:intron 25.0%
! AGGTTGTAGATTTGATAAAA+AGG - chr4_1:7301118-7301137 Msa0532750:intron 25.0%
! GGTTGTAGATTTGATAAAAA+GGG - chr4_1:7301119-7301138 Msa0532750:intron 25.0%
!! GTTAGAAAATGTATTGCTTT+TGG - chr4_1:7301291-7301310 Msa0532750:CDS 25.0%
!! TCTGATAATCCTCTATATTT+TGG - chr4_1:7301721-7301740 Msa0532750:CDS 25.0%
!! CTGATAATCCTCTATATTTT+GGG - chr4_1:7301722-7301741 Msa0532750:CDS 25.0%
! TGATTACATGTTATTAACTG+AGG - chr4_1:7301778-7301797 Msa0532750:CDS 25.0%
! AGGTTCAAAGATGTAATTAT+CGG + chr4_1:7302162-7302181 None:intergenic 25.0%
! NNNNNNNNNNTTAGCTGCAG+AGG + chr4_1:7302182-7302201 None:intergenic 25.0%
!!! TGTATAAGTATTGGATTAAG+AGG + chr4_1:7302398-7302417 None:intergenic 25.0%
! TGTAGTAGAAAATTGTTTGA+TGG + chr4_1:7302425-7302444 None:intergenic 25.0%
!! TTGTTTACGTCTTAATTTTG+AGG - chr4_1:7302565-7302584 Msa0532750:CDS 25.0%
!!! TCTTTTTTGTTTTTCCATAC+AGG - chr4_1:7302603-7302622 Msa0532750:intron 25.0%
! ATGAATGATTTGATGAGTTT+AGG - chr4_1:7302861-7302880 Msa0532750:intron 25.0%
! GGAAATAAATTATCCAAACA+TGG + chr4_1:7302887-7302906 None:intergenic 25.0%
! ACATAAATACTAACATGACA+GGG + chr4_1:7302908-7302927 None:intergenic 25.0%
! TACATAAATACTAACATGAC+AGG + chr4_1:7302909-7302928 None:intergenic 25.0%
!!! ATAACTTAGTCTTGATTAAC+TGG - chr4_1:7303129-7303148 Msa0532750:intron 25.0%
!! TTTGTATTAGGTGTTATCAA+TGG - chr4_1:7303182-7303201 Msa0532750:intron 25.0%
! TTCATATTAGAAGATCGATA+TGG + chr4_1:7303369-7303388 None:intergenic 25.0%
! TCTTTCTTCAAATTGACAAT+AGG - chr4_1:7303647-7303666 Msa0532750:intron 25.0%
! GCAATACTGATATAAAAACT+TGG + chr4_1:7303779-7303798 None:intergenic 25.0%
ATTGAAACTTACAAAGAGGA+GGG + chr4_1:7298727-7298746 None:intergenic 30.0%
AATTGAAACTTACAAAGAGG+AGG + chr4_1:7298728-7298747 None:intergenic 30.0%
CCAAATTATAGAACATACCT+TGG + chr4_1:7299001-7299020 None:intergenic 30.0%
CCAAGGTATGTTCTATAATT+TGG - chr4_1:7298998-7299017 Msa0532750:three_prime_UTR 30.0%
! GTTTGTTAGCATAGAAAATC+CGG - chr4_1:7299217-7299236 Msa0532750:three_prime_UTR 30.0%
!! TTATCTTCTTACTTTAGAGC+CGG + chr4_1:7299239-7299258 None:intergenic 30.0%
TTTGGATAAAATGTTGGACA+AGG - chr4_1:7299338-7299357 Msa0532750:three_prime_UTR 30.0%
!! AAGGTACAAGAGTTGATATT+TGG - chr4_1:7299357-7299376 Msa0532750:three_prime_UTR 30.0%
! GATTCATATTCGGTGATAAA+TGG + chr4_1:7299528-7299547 None:intergenic 30.0%
CAAATGATCATATCTGTAAC+TGG - chr4_1:7299901-7299920 Msa0532750:intron 30.0%
! TTTATCATAGAAGGTGCATT+GGG - chr4_1:7300095-7300114 Msa0532750:intron 30.0%
CACATGATGCAAATATTTAC+CGG + chr4_1:7300206-7300225 None:intergenic 30.0%
! AAAGCAGAACTAATTTTTCC+GGG - chr4_1:7300402-7300421 Msa0532750:intron 30.0%
!! ACATGTTTTTGCAAAATGTG+AGG + chr4_1:7300466-7300485 None:intergenic 30.0%
ATTTAACTGAGTAAGCTTTG+AGG + chr4_1:7300611-7300630 None:intergenic 30.0%
TGAATACAATCTTTCCATTC+TGG + chr4_1:7300720-7300739 None:intergenic 30.0%
AGAATGGAAAGATTGTATTC+AGG - chr4_1:7300719-7300738 Msa0532750:intron 30.0%
GAATGGAAAGATTGTATTCA+GGG - chr4_1:7300720-7300739 Msa0532750:intron 30.0%
!! AACCAAACTAGTTCTAAGTA+AGG + chr4_1:7300859-7300878 None:intergenic 30.0%
! TTCTTTGTTTGCTAATGCTT+AGG - chr4_1:7300878-7300897 Msa0532750:intron 30.0%
CAGATGTTGAATAAATGCTT+TGG - chr4_1:7301269-7301288 Msa0532750:intron 30.0%
!! ATTTTTCAGCAAAGCAAACT+TGG + chr4_1:7301532-7301551 None:intergenic 30.0%
ATGTCTTTCCCAAAATATAG+AGG + chr4_1:7301733-7301752 None:intergenic 30.0%
TAGTGAAATGATAGACTGAT+TGG + chr4_1:7301876-7301895 None:intergenic 30.0%
CATTTCACTATGTGCAATTA+TGG - chr4_1:7301886-7301905 Msa0532750:intron 30.0%
TACTAACCACTTATCCATTT+AGG - chr4_1:7302059-7302078 Msa0532750:intron 30.0%
ATAAAGCCTAAATGGATAAG+TGG + chr4_1:7302068-7302087 None:intergenic 30.0%
ACTTATCCATTTAGGCTTTA+TGG - chr4_1:7302067-7302086 Msa0532750:CDS 30.0%
! CTTATCCATTTAGGCTTTAT+GGG - chr4_1:7302068-7302087 Msa0532750:CDS 30.0%
! TTATCCATTTAGGCTTTATG+GGG - chr4_1:7302069-7302088 Msa0532750:CDS 30.0%
ACTATAATGAAACCTTTACG+AGG + chr4_1:7302373-7302392 None:intergenic 30.0%
GATGGATGTTGTATAAGTAT+TGG + chr4_1:7302407-7302426 None:intergenic 30.0%
! TTTTCTACTACAATACATCC+TGG - chr4_1:7302433-7302452 Msa0532750:intron 30.0%
CAACTCTAAATTGCAAAACA+TGG - chr4_1:7302477-7302496 Msa0532750:intron 30.0%
CTAAATTGCAAAACATGGTA+TGG - chr4_1:7302482-7302501 Msa0532750:intron 30.0%
!!! ATTTTGAGGTAGTCACATTT+CGG - chr4_1:7302579-7302598 Msa0532750:intron 30.0%
AATAGTTTACCTTTGTAGGA+TGG + chr4_1:7302686-7302705 None:intergenic 30.0%
AGTGAATAGTTTACCTTTGT+AGG + chr4_1:7302690-7302709 None:intergenic 30.0%
ACAGTGATATACTACCATTA+TGG - chr4_1:7302831-7302850 Msa0532750:intron 30.0%
!!! TAAACATTTTGAGACTCTTC+AGG + chr4_1:7303076-7303095 None:intergenic 30.0%
ATAAACATGATCCAAATTCC+AGG + chr4_1:7303157-7303176 None:intergenic 30.0%
!! ATGCACTAAACTTAATTTGC+AGG + chr4_1:7303894-7303913 None:intergenic 30.0%
TGGTTTCTTCGTGGTTAATT+TGG + chr4_1:7298510-7298529 None:intergenic 35.0%
ATTCTTGTATGGTTTCTTCG+TGG + chr4_1:7298519-7298538 None:intergenic 35.0%
TGTTGCTGAGAATTAACAAG+AGG - chr4_1:7298574-7298593 Msa0532750:three_prime_UTR 35.0%
GTTGCTGAGAATTAACAAGA+GGG - chr4_1:7298575-7298594 Msa0532750:three_prime_UTR 35.0%
TTGAAACTTACAAAGAGGAG+GGG + chr4_1:7298726-7298745 None:intergenic 35.0%
!! GAAATTGTTTGTAGCCTTGT+AGG + chr4_1:7298906-7298925 None:intergenic 35.0%
! TTCATTTTACTAGACCAGAG+AGG - chr4_1:7298936-7298955 Msa0532750:three_prime_UTR 35.0%
TTGTGTGAAAACACCTAACT+TGG - chr4_1:7299164-7299183 Msa0532750:three_prime_UTR 35.0%
TGTGTGAAAACACCTAACTT+GGG - chr4_1:7299165-7299184 Msa0532750:three_prime_UTR 35.0%
TATCAATCCTAACCCAAGTT+AGG + chr4_1:7299180-7299199 None:intergenic 35.0%
!! TTTTATTGGCTGCAGTTTCA+TGG - chr4_1:7299574-7299593 Msa0532750:three_prime_UTR 35.0%
GTAGCTAATTAATCCAGCTA+CGG + chr4_1:7299608-7299627 None:intergenic 35.0%
AGCTCATTCCTCTTTATACT+TGG + chr4_1:7299675-7299694 None:intergenic 35.0%
! GTTTATCATAGAAGGTGCAT+TGG - chr4_1:7300094-7300113 Msa0532750:intron 35.0%
! TTATCATAGAAGGTGCATTG+GGG - chr4_1:7300096-7300115 Msa0532750:intron 35.0%
CGGTAAATATTTGCATCATG+TGG - chr4_1:7300204-7300223 Msa0532750:intron 35.0%
! ACTAATTTTTCCGGGTAAGA+AGG - chr4_1:7300410-7300429 Msa0532750:intron 35.0%
ATAAGCACCATATCTGTTGT+TGG - chr4_1:7300556-7300575 Msa0532750:intron 35.0%
AAACCAACCAACAACAGATA+TGG + chr4_1:7300566-7300585 None:intergenic 35.0%
TTCAACAGGAGTTGTGAATT+TGG - chr4_1:7300743-7300762 Msa0532750:intron 35.0%
TGCCTTACTTAGAACTAGTT+TGG - chr4_1:7300854-7300873 Msa0532750:intron 35.0%
TAAGTGCACATTCCAATTGA+GGG - chr4_1:7300946-7300965 Msa0532750:intron 35.0%
GAATAAATCAGCAGCAGAAT+AGG + chr4_1:7301086-7301105 None:intergenic 35.0%
GTTGCACTAACCAAAACTTT+GGG + chr4_1:7301162-7301181 None:intergenic 35.0%
TGTTGCACTAACCAAAACTT+TGG + chr4_1:7301163-7301182 None:intergenic 35.0%
CTTTCTACTTAATTATGCCC+AGG - chr4_1:7301371-7301390 Msa0532750:intron 35.0%
TTTGATGAACAAAGTCCATC+AGG - chr4_1:7301413-7301432 Msa0532750:intron 35.0%
TCACAACAATTATTTCGTCG+TGG + chr4_1:7301761-7301780 None:intergenic 35.0%
ATATGCCTAATTAGAACCAG+TGG + chr4_1:7301834-7301853 None:intergenic 35.0%
!!! TTTTCAGGTTTGCAGAGAAT+GGG - chr4_1:7301941-7301960 Msa0532750:intron 35.0%
AATGGATAAGTGGTTAGTAC+TGG + chr4_1:7302058-7302077 None:intergenic 35.0%
! TCAGTTTCTTTTCCTCGTAA+AGG - chr4_1:7302358-7302377 Msa0532750:intron 35.0%
TGCAATTTAGAAAACACACC+AGG + chr4_1:7302454-7302473 None:intergenic 35.0%
CTATCAAATCCATCCTACAA+AGG - chr4_1:7302674-7302693 Msa0532750:intron 35.0%
ACTTCCATATCAGAGAAAAC+AGG - chr4_1:7302707-7302726 Msa0532750:intron 35.0%
CATTCATTTGTGCTCCATAA+TGG + chr4_1:7302848-7302867 None:intergenic 35.0%
!! CTTATTTTCATAAGCTCTCC+AGG + chr4_1:7303007-7303026 None:intergenic 35.0%
ATCGATATGGATAGATGACA+TGG + chr4_1:7303356-7303375 None:intergenic 35.0%
GAGATTAACAGTGCATTTCA+TGG + chr4_1:7303394-7303413 None:intergenic 35.0%
TCAATGGCAGAAGAATATAG+AGG + chr4_1:7303722-7303741 None:intergenic 35.0%
TATTCTTCTGCCATTGAGTT+TGG - chr4_1:7303725-7303744 Msa0532750:intron 35.0%
ACAACTATGAACATCGACAC+TGG + chr4_1:7298868-7298887 None:intergenic 40.0%
CGTATCTTACTATGCCTACA+AGG - chr4_1:7298889-7298908 Msa0532750:three_prime_UTR 40.0%
GAAAACACCTAACTTGGGTT+AGG - chr4_1:7299170-7299189 Msa0532750:three_prime_UTR 40.0%
AAATTTCACCTCAGTGTGTC+TGG + chr4_1:7299313-7299332 None:intergenic 40.0%
CTAATTAATCCAGCTACGGA+TGG + chr4_1:7299604-7299623 None:intergenic 40.0%
! AAATTTTGCCTCAGCATGTC+TGG - chr4_1:7299746-7299765 Msa0532750:CDS 40.0%
ATATCTGTAACTGGAGCAAC+AGG - chr4_1:7299910-7299929 Msa0532750:intron 40.0%
!! ACTGGAGCAACAGGTTTTAT+AGG - chr4_1:7299919-7299938 Msa0532750:intron 40.0%
!! GAGAGCATTGGGAAAATGTT+AGG + chr4_1:7300057-7300076 None:intergenic 40.0%
AGGCTCTTGAGTTAAAAGAC+CGG - chr4_1:7300184-7300203 Msa0532750:intron 40.0%
! CTTTAGATTTAGAGCGTGTC+AGG + chr4_1:7300386-7300405 None:intergenic 40.0%
TTTCCAGTGAAAGACTTTCC+AGG - chr4_1:7300675-7300694 Msa0532750:intron 40.0%
GATTGTATTCAGGGTTCAAC+AGG - chr4_1:7300729-7300748 Msa0532750:intron 40.0%
GAAGACCATCTGGTACTTAT+CGG + chr4_1:7300777-7300796 None:intergenic 40.0%
AATAACCTCAGAAGACCATC+TGG + chr4_1:7300787-7300806 None:intergenic 40.0%
TACTCCCACTATTTCCATGT+TGG - chr4_1:7300820-7300839 Msa0532750:intron 40.0%
AGAAAGAAATCAAGCAGAGC+AGG - chr4_1:7300904-7300923 Msa0532750:intron 40.0%
GAAAGAAATCAAGCAGAGCA+GGG - chr4_1:7300905-7300924 Msa0532750:intron 40.0%
!! GGAATGTGCACTTACTTTTG+AGG + chr4_1:7300940-7300959 None:intergenic 40.0%
GTAAGTGCACATTCCAATTG+AGG - chr4_1:7300945-7300964 Msa0532750:intron 40.0%
! TGAAACTCGACCCAAAGTTT+TGG - chr4_1:7301149-7301168 Msa0532750:intron 40.0%
! GCAACAGCTGTTGGTTATTA+TGG - chr4_1:7301177-7301196 Msa0532750:intron 40.0%
AACCAGTAGAGAACCAGTTT+GGG + chr4_1:7301215-7301234 None:intergenic 40.0%
ATCAAAGACTTGTGTCTCAC+TGG + chr4_1:7301399-7301418 None:intergenic 40.0%
TGAACAAAGTCCATCAGGAA+AGG - chr4_1:7301418-7301437 Msa0532750:intron 40.0%
TCCATCAGGAAAGGATTATC+TGG - chr4_1:7301427-7301446 Msa0532750:intron 40.0%
ATGTTGAACCTCCTAACAGA+TGG - chr4_1:7301627-7301646 Msa0532750:intron 40.0%
CTATGATTCCATCTGTTAGG+AGG + chr4_1:7301638-7301657 None:intergenic 40.0%
CTCCTAACAGATGGAATCAT+AGG - chr4_1:7301636-7301655 Msa0532750:intron 40.0%
AGCCTATGATTCCATCTGTT+AGG + chr4_1:7301641-7301660 None:intergenic 40.0%
AGATGGAATCATAGGCTATG+AGG - chr4_1:7301644-7301663 Msa0532750:intron 40.0%
! TAATTAGAACCAGTGGACTC+TGG + chr4_1:7301827-7301846 None:intergenic 40.0%
!! AGAGTCCACTGGTTCTAATT+AGG - chr4_1:7301826-7301845 Msa0532750:intron 40.0%
! CTGAATCTTCCCATCTTTTC+AGG - chr4_1:7301926-7301945 Msa0532750:intron 40.0%
CTCTGCAAACCTGAAAAGAT+GGG + chr4_1:7301938-7301957 None:intergenic 40.0%
TCTCTGCAAACCTGAAAAGA+TGG + chr4_1:7301939-7301958 None:intergenic 40.0%
!!! CTTTTCAGGTTTGCAGAGAA+TGG - chr4_1:7301940-7301959 Msa0532750:intron 40.0%
TTGCAGAGAATGGGAATCAA+CGG - chr4_1:7301950-7301969 Msa0532750:intron 40.0%
!! GGTGTTGTTCTTGGTAAAGA+TGG - chr4_1:7302017-7302036 Msa0532750:intron 40.0%
GTTGTTCTTGGTAAAGATGG+TGG - chr4_1:7302020-7302039 Msa0532750:intron 40.0%
AACACCCCATAAAGCCTAAA+TGG + chr4_1:7302076-7302095 None:intergenic 40.0%
! TTTTTCCATACAGGTTCTCC+TGG - chr4_1:7302612-7302631 Msa0532750:intron 40.0%
AATGTCATCCAGATGAATCC+AGG + chr4_1:7302633-7302652 None:intergenic 40.0%
! CAGTCCTGTTTTCTCTGATA+TGG + chr4_1:7302714-7302733 None:intergenic 40.0%
TATCACTGTAGTGTAAAGCG+CGG + chr4_1:7302820-7302839 None:intergenic 40.0%
TGATGAGTTTAGGCCATGTT+TGG - chr4_1:7302871-7302890 Msa0532750:intron 40.0%
ATTAACTGGTGCCTGGAATT+TGG - chr4_1:7303143-7303162 Msa0532750:intron 40.0%
! GAACAGCTGGGAAATGTTTT+GGG - chr4_1:7303242-7303261 Msa0532750:intron 40.0%
!!! ATCTCTCTGCAGGTTTTAGA+AGG - chr4_1:7303409-7303428 Msa0532750:intron 40.0%
!!! GGTTTTAGAAGGACAAAGAG+TGG - chr4_1:7303420-7303439 Msa0532750:intron 40.0%
ATGTCAGTGGCATTCATCAA+CGG - chr4_1:7303594-7303613 Msa0532750:intron 40.0%
ACAAAAGTGGCCAAACTCAA+TGG + chr4_1:7303738-7303757 None:intergenic 40.0%
AAACTTGGCACAAGAATGAC+AGG + chr4_1:7303764-7303783 None:intergenic 40.0%
AAGGTGAAGAGAAGGAGAGA+CGG + chr4_1:7298697-7298716 None:intergenic 45.0%
CTTGTCCTAAGTGAGCAATG+GGG + chr4_1:7298776-7298795 None:intergenic 45.0%
CCTTGTCCTAAGTGAGCAAT+GGG + chr4_1:7298777-7298796 None:intergenic 45.0%
TCCTTGTCCTAAGTGAGCAA+TGG + chr4_1:7298778-7298797 None:intergenic 45.0%
TTTACTAGACCAGAGAGGCT+AGG - chr4_1:7298941-7298960 Msa0532750:three_prime_UTR 45.0%
!! GTTTGGTGTGACACTGATCA+AGG - chr4_1:7298973-7298992 Msa0532750:three_prime_UTR 45.0%
ACTCGTTATCTTTGCCTCCT+TGG - chr4_1:7299102-7299121 Msa0532750:intron 45.0%
CTCGTTATCTTTGCCTCCTT+GGG - chr4_1:7299103-7299122 Msa0532750:intron 45.0%
TCGTTATCTTTGCCTCCTTG+GGG - chr4_1:7299104-7299123 Msa0532750:intron 45.0%
ACTCAGAATGATTCTCCCCA+AGG + chr4_1:7299122-7299141 None:intergenic 45.0%
TTGGGGAGAATCATTCTGAG+TGG - chr4_1:7299121-7299140 Msa0532750:intron 45.0%
TGGGGAGAATCATTCTGAGT+GGG - chr4_1:7299122-7299141 Msa0532750:intron 45.0%
CAATGATTGATCACGGAGTC+CGG - chr4_1:7299270-7299289 Msa0532750:three_prime_UTR 45.0%
TCATGATACCAGACATGCTG+AGG + chr4_1:7299757-7299776 None:intergenic 45.0%
! CTAGTAAGTACTGCCAGAGA+CGG + chr4_1:7299983-7300002 None:intergenic 45.0%
!! ACATAAGAGGCACTATGACC+AGG + chr4_1:7300136-7300155 None:intergenic 45.0%
GCACCATATCTGTTGTTGGT+TGG - chr4_1:7300560-7300579 Msa0532750:intron 45.0%
ACTCCTGGAAAGTCTTTCAC+TGG + chr4_1:7300681-7300700 None:intergenic 45.0%
TTTCCAGGAGTCAAGATTGC+AGG - chr4_1:7300690-7300709 Msa0532750:intron 45.0%
TTCCAGGAGTCAAGATTGCA+GGG - chr4_1:7300691-7300710 Msa0532750:intron 45.0%
ACAGGAGTTGTGAATTTGGC+CGG - chr4_1:7300747-7300766 Msa0532750:intron 45.0%
TCTGGTACTTATCGGCAATC+CGG + chr4_1:7300769-7300788 None:intergenic 45.0%
GATTGCCGATAAGTACCAGA+TGG - chr4_1:7300769-7300788 Msa0532750:intron 45.0%
AAGTACCAGATGGTCTTCTG+AGG - chr4_1:7300779-7300798 Msa0532750:intron 45.0%
TCCCACTATTTCCATGTTGG+CGG - chr4_1:7300823-7300842 Msa0532750:intron 45.0%
ACCGCCAACATGGAAATAGT+GGG + chr4_1:7300827-7300846 None:intergenic 45.0%
AACCGCCAACATGGAAATAG+TGG + chr4_1:7300828-7300847 None:intergenic 45.0%
GCAAAAGATAACCGCCAACA+TGG + chr4_1:7300837-7300856 None:intergenic 45.0%
ACTTTGGGTCGAGTTTCATC+TGG + chr4_1:7301147-7301166 None:intergenic 45.0%
TTGGTTAGTGCAACAGCTGT+TGG - chr4_1:7301168-7301187 Msa0532750:intron 45.0%
GTATGTCTGTATGCCCAAAC+TGG - chr4_1:7301199-7301218 Msa0532750:intron 45.0%
CAACCAGTAGAGAACCAGTT+TGG + chr4_1:7301216-7301235 None:intergenic 45.0%
GCCAGATAATCCTTTCCTGA+TGG + chr4_1:7301431-7301450 None:intergenic 45.0%
AGGAAAGGATTATCTGGCTG+AGG - chr4_1:7301433-7301452 Msa0532750:intron 45.0%
GGATTATCTGGCTGAGGTAA+AGG - chr4_1:7301439-7301458 Msa0532750:intron 45.0%
GGCTAATGGAGATGTTAGAG+TGG - chr4_1:7301980-7301999 Msa0532750:intron 45.0%
!! AGAGTGGCTCTAATTCGCAT+CGG - chr4_1:7301996-7302015 Msa0532750:intron 45.0%
!! ATTCGCATCGGTGTTGTTCT+TGG - chr4_1:7302008-7302027 Msa0532750:intron 45.0%
!! GGTAAAGATGGTGGAGCATT+AGG - chr4_1:7302029-7302048 Msa0532750:intron 45.0%
CCAGCAAACATCATGAAGAG+AGG + chr4_1:7302302-7302321 None:intergenic 45.0%
CCTCTCTTCATGATGTTTGC+TGG - chr4_1:7302299-7302318 Msa0532750:intron 45.0%
! CTCTTCATGATGTTTGCTGG+TGG - chr4_1:7302302-7302321 Msa0532750:intron 45.0%
!! CATTGATTTCCAGAGCCTAG+AGG + chr4_1:7302329-7302348 None:intergenic 45.0%
!! CTCTAGGCTCTGGAAATCAA+TGG - chr4_1:7302327-7302346 Msa0532750:intron 45.0%
TGAATCCAGGAGAACCTGTA+TGG + chr4_1:7302620-7302639 None:intergenic 45.0%
ATCACTGTAGTGTAAAGCGC+GGG + chr4_1:7302819-7302838 None:intergenic 45.0%
GCTGTCTTCAAAAGCTATCC+TGG - chr4_1:7302986-7303005 Msa0532750:intron 45.0%
AGTCTTGATTAACTGGTGCC+TGG - chr4_1:7303136-7303155 Msa0532750:intron 45.0%
! CGAACAGCTGGGAAATGTTT+TGG - chr4_1:7303241-7303260 Msa0532750:intron 45.0%
TTTGCACTCAAGGCTGTTCT+TGG - chr4_1:7303293-7303312 Msa0532750:intron 45.0%
CTGTGGTAAGGAATCATCTC+TGG - chr4_1:7303327-7303346 Msa0532750:intron 45.0%
TGCACTGTTAATCTCTCTGC+AGG - chr4_1:7303399-7303418 Msa0532750:intron 45.0%
GAATGAGAAACCCAGCTTCT+TGG + chr4_1:7303458-7303477 None:intergenic 45.0%
!! ATGTTGGAAGGGTTGATGCA+AGG + chr4_1:7303576-7303595 None:intergenic 45.0%
ATGCCACTGACATGTTGGAA+GGG + chr4_1:7303587-7303606 None:intergenic 45.0%
AATGCCACTGACATGTTGGA+AGG + chr4_1:7303588-7303607 None:intergenic 45.0%
GATGAATGCCACTGACATGT+TGG + chr4_1:7303592-7303611 None:intergenic 45.0%
GAATGACAGGTGGACAAAAG+TGG + chr4_1:7303751-7303770 None:intergenic 45.0%
GTAGAGCTACAGCTCTCACT+TGG - chr4_1:7298664-7298683 Msa0532750:three_prime_UTR 50.0%
GGTTGAGGAAGGTGAAGAGA+AGG + chr4_1:7298705-7298724 None:intergenic 50.0%
CTTACAAAGAGGAGGGGTTG+AGG + chr4_1:7298720-7298739 None:intergenic 50.0%
TTGCACCCCATTGCTCACTT+AGG - chr4_1:7298768-7298787 Msa0532750:three_prime_UTR 50.0%
CCCATTGCTCACTTAGGACA+AGG - chr4_1:7298774-7298793 Msa0532750:three_prime_UTR 50.0%
AGGCTAGGAGGTTCAGAGTT+TGG - chr4_1:7298956-7298975 Msa0532750:three_prime_UTR 50.0%
TGACACTGATCAAGGCTCCA+AGG - chr4_1:7298981-7299000 Msa0532750:three_prime_UTR 50.0%
CAGAATGATTCTCCCCAAGG+AGG + chr4_1:7299119-7299138 None:intergenic 50.0%
GGTACGTGTGCACAATTGAC+CGG + chr4_1:7299292-7299311 None:intergenic 50.0%
! GAGTCGAGCTGAAAGTGCAA+CGG + chr4_1:7299481-7299500 None:intergenic 50.0%
!! ATCACCGAGCGTGTTTTTGC+AGG - chr4_1:7299873-7299892 Msa0532750:intron 50.0%
!! TCACCGAGCGTGTTTTTGCA+GGG - chr4_1:7299874-7299893 Msa0532750:intron 50.0%
TCTCCCTGCAAAAACACGCT+CGG + chr4_1:7299880-7299899 None:intergenic 50.0%
TTGGTGCAAAAGCTGCAAGC+AGG - chr4_1:7299949-7299968 Msa0532750:intron 50.0%
! TAAGTACTGCCAGAGACGGA+GGG + chr4_1:7299979-7299998 None:intergenic 50.0%
CGTCTCTGGCAGTACTTACT+AGG - chr4_1:7299981-7300000 Msa0532750:intron 50.0%
GGGGTTGTATTGTACTCTCC+TGG - chr4_1:7300115-7300134 Msa0532750:intron 50.0%
TCCAGGAGTCAAGATTGCAG+GGG - chr4_1:7300692-7300711 Msa0532750:intron 50.0%
AGATTGCAGGGGAACCAGAA+TGG - chr4_1:7300703-7300722 Msa0532750:intron 50.0%
! TGCCCAAACTGGTTCTCTAC+TGG - chr4_1:7301210-7301229 Msa0532750:intron 50.0%
ATACAACCTCCAGAGTCCAC+TGG - chr4_1:7301815-7301834 Msa0532750:intron 50.0%
! TTAGAACCAGTGGACTCTGG+AGG + chr4_1:7301824-7301843 None:intergenic 50.0%
ATGGGAATCAACGGCGCTAA+AGG - chr4_1:7301959-7301978 Msa0532750:intron 50.0%
TCAACGGCGCTAAAGGCTAA+TGG - chr4_1:7301966-7301985 Msa0532750:intron 50.0%
! ATGTTTGCTGGTGGACCTCT+AGG - chr4_1:7302311-7302330 Msa0532750:intron 50.0%
CAGGTTCTCCTGGATTCATC+TGG - chr4_1:7302622-7302641 Msa0532750:intron 50.0%
TCCGAATTGTGCGAACAGCT+GGG - chr4_1:7303230-7303249 Msa0532750:intron 50.0%
TCCCAGCTGTTCGCACAATT+CGG + chr4_1:7303234-7303253 None:intergenic 50.0%
!! ATGTTTTGGGTCGTCCCTCA+TGG - chr4_1:7303255-7303274 Msa0532750:intron 50.0%
TTGAGTGCAAAGTCAGGCAC+CGG + chr4_1:7303284-7303303 None:intergenic 50.0%
ACAGCCTTGAGTGCAAAGTC+AGG + chr4_1:7303290-7303309 None:intergenic 50.0%
CTCAAGGCTGTTCTTGGAGA+AGG - chr4_1:7303299-7303318 Msa0532750:intron 50.0%
!! TCTTGGAGAAGGTGCTACTG+TGG - chr4_1:7303310-7303329 Msa0532750:intron 50.0%
!! GAGAAGGTGCTACTGTGGTA+AGG - chr4_1:7303315-7303334 Msa0532750:intron 50.0%
TCCTACTCAAGCCAAGAAGC+TGG - chr4_1:7303444-7303463 Msa0532750:intron 50.0%
CCTACTCAAGCCAAGAAGCT+GGG - chr4_1:7303445-7303464 Msa0532750:intron 50.0%
CAACCCTTCCAACATGTCAG+TGG - chr4_1:7303581-7303600 Msa0532750:intron 50.0%
CTTGGCACAAGAATGACAGG+TGG + chr4_1:7303761-7303780 None:intergenic 50.0%
CAAAGAGGAGGGGTTGAGGA+AGG + chr4_1:7298716-7298735 None:intergenic 55.0%
ACTAGACCAGAGAGGCTAGG+AGG - chr4_1:7298944-7298963 Msa0532750:three_prime_UTR 55.0%
TCTGAACCTCCTAGCCTCTC+TGG + chr4_1:7298953-7298972 None:intergenic 55.0%
CACACGTACCAGACACACTG+AGG - chr4_1:7299302-7299321 Msa0532750:three_prime_UTR 55.0%
! GTAAGTACTGCCAGAGACGG+AGG + chr4_1:7299980-7299999 None:intergenic 55.0%
TCCCCTGCAATCTTGACTCC+TGG + chr4_1:7300696-7300715 None:intergenic 55.0%
CTTGTGTCTCACTGGTGCCT+GGG + chr4_1:7301391-7301410 None:intergenic 55.0%
ACTTGTGTCTCACTGGTGCC+TGG + chr4_1:7301392-7301411 None:intergenic 55.0%
CACAATTCGGACAGTCGCAC+GGG + chr4_1:7303221-7303240 None:intergenic 55.0%
GCACAATTCGGACAGTCGCA+CGG + chr4_1:7303222-7303241 None:intergenic 55.0%
GTCCGAATTGTGCGAACAGC+TGG - chr4_1:7303229-7303248 Msa0532750:intron 55.0%
GGTGCCTGACTTTGCACTCA+AGG - chr4_1:7303283-7303302 Msa0532750:intron 55.0%
! CCCAGCTTCTTGGCTTGAGT+AGG + chr4_1:7303448-7303467 None:intergenic 55.0%
GGGTAGACGCTCGAGCATAG+AGG + chr4_1:7299507-7299526 None:intergenic 60.0%
! CATGGAGTGCCATCCGTAGC+TGG - chr4_1:7299592-7299611 Msa0532750:three_prime_UTR 60.0%
! CGGGCAAGTTGACGGGGAAA+TGG + chr4_1:7302790-7302809 None:intergenic 60.0%
TCGGACAGTCGCACGGGATT+TGG + chr4_1:7303215-7303234 None:intergenic 60.0%
! GCAGGTTAGCCCTCCGTCTC+TGG - chr4_1:7299967-7299986 Msa0532750:intron 65.0%
! GCTGGTGGACCTCTAGGCTC+TGG - chr4_1:7302317-7302336 Msa0532750:intron 65.0%
! CAAGCGCGGGCAAGTTGACG+GGG + chr4_1:7302796-7302815 None:intergenic 65.0%
! GCAAGCGCGGGCAAGTTGAC+GGG + chr4_1:7302797-7302816 None:intergenic 65.0%
! GGCAAGCGCGGGCAAGTTGA+CGG + chr4_1:7302798-7302817 None:intergenic 65.0%
TGTAAAGCGCGGGCAAGCGC+GGG + chr4_1:7302809-7302828 None:intergenic 65.0%
GTGTAAAGCGCGGGCAAGCG+CGG + chr4_1:7302810-7302829 None:intergenic 65.0%
!! TCAGGCACCGGCAGCCATGA+GGG + chr4_1:7303272-7303291 None:intergenic 65.0%
GGGTCGTCCCTCATGGCTGC+CGG - chr4_1:7303262-7303281 Msa0532750:intron 70.0%
!! GTCAGGCACCGGCAGCCATG+AGG + chr4_1:7303273-7303292 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 7298484 7304003 7298484 ID=Msa0532750;Name=Msa0532750
chr4_1 mRNA 7298484 7304003 7298484 ID=Msa0532750-mRNA-1;Parent=Msa0532750;Name=Msa0532750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=170|0.90|0.91|1|0.90|0.83|12|1169|271
chr4_1 exon 7298484 7299066 7298484 ID=Msa0532750-mRNA-1:exon:2541;Parent=Msa0532750-mRNA-1
chr4_1 exon 7299156 7299862 7299156 ID=Msa0532750-mRNA-1:exon:2540;Parent=Msa0532750-mRNA-1
chr4_1 exon 7300139 7300154 7300139 ID=Msa0532750-mRNA-1:exon:2539;Parent=Msa0532750-mRNA-1
chr4_1 exon 7300437 7300539 7300437 ID=Msa0532750-mRNA-1:exon:2538;Parent=Msa0532750-mRNA-1
chr4_1 exon 7301033 7301094 7301033 ID=Msa0532750-mRNA-1:exon:2537;Parent=Msa0532750-mRNA-1
chr4_1 exon 7301289 7301367 7301289 ID=Msa0532750-mRNA-1:exon:2536;Parent=Msa0532750-mRNA-1
chr4_1 exon 7301543 7301587 7301543 ID=Msa0532750-mRNA-1:exon:2535;Parent=Msa0532750-mRNA-1
chr4_1 exon 7301687 7301805 7301687 ID=Msa0532750-mRNA-1:exon:2534;Parent=Msa0532750-mRNA-1
chr4_1 exon 7302064 7302123 7302064 ID=Msa0532750-mRNA-1:exon:2533;Parent=Msa0532750-mRNA-1
chr4_1 exon 7302517 7302592 7302517 ID=Msa0532750-mRNA-1:exon:2532;Parent=Msa0532750-mRNA-1
chr4_1 exon 7303485 7303538 7303485 ID=Msa0532750-mRNA-1:exon:2531;Parent=Msa0532750-mRNA-1
chr4_1 exon 7303753 7304003 7303753 ID=Msa0532750-mRNA-1:exon:2530;Parent=Msa0532750-mRNA-1
chr4_1 five_prime_UTR 7303834 7304003 7303834 ID=Msa0532750-mRNA-1:five_prime_utr;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7303753 7303833 7303753 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7303485 7303538 7303485 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7302517 7302592 7302517 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7302064 7302123 7302064 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7301687 7301805 7301687 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7301543 7301587 7301543 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7301289 7301367 7301289 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7301033 7301094 7301033 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7300437 7300539 7300437 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7300139 7300154 7300139 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 CDS 7299742 7299862 7299742 ID=Msa0532750-mRNA-1:cds;Parent=Msa0532750-mRNA-1
chr4_1 three_prime_UTR 7299156 7299741 7299156 ID=Msa0532750-mRNA-1:three_prime_utr;Parent=Msa0532750-mRNA-1
chr4_1 three_prime_UTR 7298484 7299066 7298484 ID=Msa0532750-mRNA-1:three_prime_utr;Parent=Msa0532750-mRNA-1
Gene Sequence

>Msa0532750

ATGGAAATCAGTAGAGCTACAGCTCTCACTTGGTCTCATACCGTCTCTCCTTCTCTTCACCTTCCTCAACCCCTCCTCTTTACCAGAGAGGCTAGGAGGTTCAGAGTTTGGTGTGACACTGATCAAGGCTCCAAGGGAGATCAAATGATCATATCTGTAACTGGAGCAACAGGTTTTATAGGTAAAAGATTGGTGCAAAAGCTGCAAGCAGAAAATCACAGAGTTCATGTCCTGACACGCTCTAAATCTAAAGCAGAACTAATTTTTCCGGTGAAAGACTTTCCAGGAGTCAAGATTGCAGGGGAACCAGAATGGAAAGATTGTATTCAGGGTTCAACAGGAGTTGTGAATTTGGCCGGATTGCCGATAAGTACCAGATGGTCTTCTGAGGTAAAGAAAGAAATCAAGCAGAGCAGGGTTAGAGTGACCTCAAAAGTTGTAGATTTGATAAAAAGGGCACCAGATGAAACTCGACCCAAAGTTTTGGTTAGTGCAACAGCTGTTGGTTATTATGGCACCAGTGAGACACAAGTCTTTGATGAACAAAGTCCATCAGGAAAGGATTATCTGGCTGAGGTTTGCAGAGAATGGGAATCAACGGCGCTAAAGGCTAATGGAGATGTTAGAGTGGCTCTAATTCGCATCGGTGTTGTTCTTGGTAAAGATGGTGGAGCATTAGGCTCTGGAAATCAATGGTTCTCCTGGATTCATCTGGATGACATTGTCAATTTAATATACGAAGCACTATCAAATCCATCCTACAAAGGTAAACTATTCACTTCCATATCAGAGAAAACAGGACTGTCAAATTCATAA

Protein sequence

>Msa0532750

MEISRATALTWSHTVSPSLHLPQPLLFTREARRFRVWCDTDQGSKGDQMIISVTGATGFIGKRLVQKLQAENHRVHVLTRSKSKAELIFPVKDFPGVKIAGEPEWKDCIQGSTGVVNLAGLPISTRWSSEVKKEIKQSRVRVTSKVVDLIKRAPDETRPKVLVSATAVGYYGTSETQVFDEQSPSGKDYLAEVCREWESTALKANGDVRVALIRIGVVLGKDGGALGSGNQWFSWIHLDDIVNLIYEALSNPSYKGKLFTSISEKTGLSNS*