AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616000 MtrunA17_Chr4g0052911 80.851 235 14 5 1 204 6 240 1.39e-121 343
Msa0616000 MtrunA17_Chr8g0382711 43.077 130 49 3 96 201 76 204 3.77e-25 97.4
Msa0616000 MtrunA17_Chr1g0179681 30.857 175 67 5 74 202 76 242 5.02e-14 68.6
Msa0616000 MtrunA17_Chr5g0396231 35.484 124 50 4 100 201 382 497 2.39e-12 65.1
Msa0616000 MtrunA17_Chr8g0339171 39.175 97 32 3 125 201 46 135 7.93e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616000 AT5G45680.1 49.767 215 65 8 26 204 1 208 1.88e-57 180
Msa0616000 AT4G39710.1 37.654 162 68 5 72 201 48 208 1.83e-25 99.0
Msa0616000 AT4G39710.3 37.654 162 68 5 72 201 48 208 1.83e-25 99.0
Msa0616000 AT5G05420.1 50.000 88 35 3 115 202 63 141 2.29e-17 75.9
Msa0616000 AT3G10060.1 33.600 125 48 3 105 202 99 215 3.95e-13 66.2
Msa0616000 AT4G39710.2 34.454 119 49 4 72 162 48 165 8.16e-13 64.3

Find 70 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAACTTGTAAATTAAA+AGG 0.154515 4_2:-65658709 None:intergenic
TTGAAGCTTCCTCCAGAATT+TGG 0.175545 4_2:+65657593 Msa0616000:CDS
ATAGGCCTCTCCTTGAGTTT+TGG 0.272868 4_2:+65656589 Msa0616000:CDS
AGTACACTGTCAGCTTTAAA+AGG 0.285134 4_2:+65658938 Msa0616000:three_prime_UTR
TCTTATTGTGATAAAATTGT+AGG 0.291291 4_2:+65656703 Msa0616000:CDS
CCTTGAATTTCCTTGGAGAT+TGG 0.296112 4_2:+65658662 Msa0616000:three_prime_UTR
AACTCATTTCCACTGAATTC+AGG 0.301778 4_2:-65656414 None:intergenic
GCTCTAGATCACATTGATAA+AGG 0.301927 4_2:+65658770 Msa0616000:three_prime_UTR
CTATGGTCCTCAGGCTGTTA+AGG 0.309962 4_2:+65656726 Msa0616000:CDS
CTTGAGCCATATCCAAATTC+TGG 0.313714 4_2:-65657605 None:intergenic
TGTTAAGGGACAACTTATTA+AGG 0.315282 4_2:+65656741 Msa0616000:CDS
GGAATTCCTCCTATGCTTAC+AGG 0.339705 4_2:+65657473 Msa0616000:CDS
CTTCCTCCAGAATTTGGATA+TGG 0.340666 4_2:+65657599 Msa0616000:CDS
TTTCCACTGAATTCAGGATA+TGG 0.346588 4_2:-65656408 None:intergenic
GCTGTTGCAGTAGGTATTAT+TGG 0.348854 4_2:-65656634 None:intergenic
AGGCAAGTCCCAACTGAATA+TGG 0.354350 4_2:-65656445 None:intergenic
AGAACATGTTGTTAGTGAAT+TGG 0.362479 4_2:-65656500 None:intergenic
GGCACATTATGTGGGGAGAT+TGG 0.379326 4_2:+65657011 Msa0616000:intron
TTACCTTCCTTGAATTTCCT+TGG 0.390463 4_2:+65658655 Msa0616000:three_prime_UTR
ATCAAACTTGTAAATTAAAA+GGG 0.396485 4_2:-65658708 None:intergenic
GAATTAACTGTAGCTCCTTC+AGG 0.411871 4_2:+65656676 Msa0616000:CDS
TCGAATAAGAGTACCGCATC+GGG 0.420967 4_2:-65658584 None:intergenic
CTGGTGGTTGTTGTTGGACT+TGG 0.423685 4_2:-65656525 None:intergenic
TTAATGTTAGGCACATTATG+TGG 0.439371 4_2:+65657002 Msa0616000:intron
TGTGATAAAATTGTAGGCTA+TGG 0.467135 4_2:+65656709 Msa0616000:CDS
CAAGAACTGGTGGTTGTTGT+TGG 0.468643 4_2:-65656531 None:intergenic
CTGAAAAGAAGAGAAGCAAT+AGG 0.473925 4_2:+65656571 Msa0616000:CDS
TATGGTCCTCAGGCTGTTAA+GGG 0.475010 4_2:+65656727 Msa0616000:CDS
CCAATCTCCAAGGAAATTCA+AGG 0.485040 4_2:-65658662 None:intergenic
CACTAGCACCATATTCAGTT+GGG 0.486666 4_2:+65656437 Msa0616000:CDS
AATTGTAGGCTATGGTCCTC+AGG 0.493523 4_2:+65656717 Msa0616000:CDS
GGGGAAAATAATAGTAATCT+CGG 0.499779 4_2:-65658687 None:intergenic
TCACTAGCACCATATTCAGT+TGG 0.504892 4_2:+65656436 Msa0616000:CDS
GGATATGGCTCAAGAGGAGC+TGG 0.513862 4_2:+65657614 Msa0616000:CDS
TCATATAGGTTATCAAAGGA+TGG 0.519848 4_2:+65657426 Msa0616000:intron
GTTATCAAAGGATGGGATGT+AGG 0.520177 4_2:+65657434 Msa0616000:CDS
TCAAACTTGTAAATTAAAAG+GGG 0.520191 4_2:-65658707 None:intergenic
CAGGTACCTGTAAGCATAGG+AGG 0.528701 4_2:-65657479 None:intergenic
CTGAATTCAGGATATGGCCA+TGG 0.535653 4_2:-65656402 None:intergenic
TAATGTTAGGCACATTATGT+GGG 0.541025 4_2:+65657003 Msa0616000:intron
GGAAGGTAATTTGACTGCCA+TGG 0.544498 4_2:-65658641 None:intergenic
TGAATTCAGGATATGGCCAT+GGG 0.557547 4_2:-65656401 None:intergenic
GCTTCAGCTGCTGTTGCAGT+AGG 0.562444 4_2:-65656643 None:intergenic
GAATTTGGATATGGCTCAAG+AGG 0.566038 4_2:+65657608 Msa0616000:CDS
TTTGGGGCTGCAAGGAGGTG+AGG 0.573241 4_2:-65656465 None:intergenic
CATATAGGTTATCAAAGGAT+GGG 0.577493 4_2:+65657427 Msa0616000:intron
TATGTGGGGAGATTGGAGAA+TGG 0.578143 4_2:+65657018 Msa0616000:CDS
ATGTTGTTAGTGAATTGGAA+TGG 0.592486 4_2:-65656495 None:intergenic
TCACAATAAGAAAGGCCTGA+AGG 0.595988 4_2:-65656691 None:intergenic
TGAATCATATAGGTTATCAA+AGG 0.598952 4_2:+65657422 Msa0616000:intron
AGTATCATCAACTTCCACAT+TGG 0.600616 4_2:+65658834 Msa0616000:three_prime_UTR
AAACAGGTACCTGTAAGCAT+AGG 0.604775 4_2:-65657482 None:intergenic
ATGTCGAAGACCAAAACTCA+AGG 0.605049 4_2:-65656599 None:intergenic
GTCGAATAAGAGTACCGCAT+CGG 0.605120 4_2:-65658585 None:intergenic
AAGCATGATTTACAACTCCA+TGG 0.608035 4_2:+65658624 Msa0616000:exon
TAGTAGTGGTATGAATATTG+TGG 0.612278 4_2:-65656360 None:intergenic
AATAAGAGTACCGCATCGGG+AGG 0.612454 4_2:-65658581 None:intergenic
TGGCCATATCCTGAATTCAG+TGG 0.622610 4_2:+65656405 Msa0616000:CDS
TCTCCAAGGAAATTCAAGGA+AGG 0.641691 4_2:-65658658 None:intergenic
AATGTTAGGCACATTATGTG+GGG 0.643650 4_2:+65657004 Msa0616000:intron
GGAGCTACAGTTAATTCACA+TGG 0.644123 4_2:-65656670 None:intergenic
GAGCCATATCCAAATTCTGG+AGG 0.647151 4_2:-65657602 None:intergenic
AATAATCAAGTCATCCAATG+TGG 0.649424 4_2:-65658848 None:intergenic
GAAGACCAAAACTCAAGGAG+AGG 0.651493 4_2:-65656594 None:intergenic
ATGTGTCATTCCTCCCGATG+CGG 0.653625 4_2:+65658571 Msa0616000:CDS
AGTTGTCCCTTAACAGCCTG+AGG 0.654589 4_2:-65656733 None:intergenic
AGTTAAATATAATTAGATGA+CGG 0.657127 4_2:-65658968 None:intergenic
AATCTCGGCTCCAATCTCCA+AGG 0.671361 4_2:-65658672 None:intergenic
CAAACTTGTAAATTAAAAGG+GGG 0.675261 4_2:-65658706 None:intergenic
GAATTCAGGATATGGCCATG+GGG 0.748796 4_2:-65656400 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATATGATAAAAGTAAAA+TGG + chr4_2:65656819-65656838 Msa0616000:intron 15.0%
!! ATATTATTCATGAATCATAT+AGG + chr4_2:65657412-65657431 Msa0616000:intron 15.0%
!!! GTAAATTCTATTTTGTTTTA+TGG + chr4_2:65657516-65657535 Msa0616000:intron 15.0%
!! TATAATGATAGCAAATTAAA+AGG - chr4_2:65657681-65657700 None:intergenic 15.0%
!! TATCAAATTTGATCTTTATA+TGG - chr4_2:65657714-65657733 None:intergenic 15.0%
!!! AGGAAAATGAATAATTTTTA+GGG + chr4_2:65657978-65657997 Msa0616000:intron 15.0%
!! ATCAAACTTGTAAATTAAAA+GGG - chr4_2:65658711-65658730 None:intergenic 15.0%
!!! CAATTTTATCACAATAAGAA+AGG - chr4_2:65656702-65656721 None:intergenic 20.0%
!! TCTTATTGTGATAAAATTGT+AGG + chr4_2:65656703-65656722 Msa0616000:CDS 20.0%
!! TTGACCATTATATTAATGTT+AGG + chr4_2:65656990-65657009 Msa0616000:intron 20.0%
!! GTTAATAAACCAAAAAGTAA+AGG + chr4_2:65657292-65657311 Msa0616000:intron 20.0%
!!! GACATTTTTTATTCTATGTT+AGG + chr4_2:65657557-65657576 Msa0616000:intron 20.0%
!!! ATTTTTTATTCTATGTTAGG+AGG + chr4_2:65657560-65657579 Msa0616000:intron 20.0%
!!! AAGATCAAATTTGATAACTT+TGG + chr4_2:65657718-65657737 Msa0616000:intron 20.0%
!!! AATATACAAAACTTGATGAT+AGG + chr4_2:65657865-65657884 Msa0616000:intron 20.0%
!!! ATATACAAAACTTGATGATA+GGG + chr4_2:65657866-65657885 Msa0616000:intron 20.0%
!!! GAGGAAAATGAATAATTTTT+AGG + chr4_2:65657977-65657996 Msa0616000:intron 20.0%
!! CTTGATTATAATAGAGAAAT+TGG + chr4_2:65658112-65658131 Msa0616000:intron 20.0%
!!! CTATTTTTTGAAATAATTGC+CGG + chr4_2:65658401-65658420 Msa0616000:intron 20.0%
!! TCAAACTTGTAAATTAAAAG+GGG - chr4_2:65658710-65658729 None:intergenic 20.0%
!! CATCAAACTTGTAAATTAAA+AGG - chr4_2:65658712-65658731 None:intergenic 20.0%
!!! CTTTTAATTTACAAGTTTGA+TGG + chr4_2:65658710-65658729 Msa0616000:three_prime_UTR 20.0%
!! ATTGGAATGGTTAAGTTTTT+GGG - chr4_2:65656485-65656504 None:intergenic 25.0%
!! AATTGGAATGGTTAAGTTTT+TGG - chr4_2:65656486-65656505 None:intergenic 25.0%
!! TATAACTGACTTTGTATAGA+AGG + chr4_2:65656794-65656813 Msa0616000:intron 25.0%
! ACTAACTAACTTCATTTCAT+CGG - chr4_2:65656883-65656902 None:intergenic 25.0%
! TATAATGGTCAAATTAAGCA+CGG - chr4_2:65656982-65657001 None:intergenic 25.0%
! TGTGCCTAACATTAATATAA+TGG - chr4_2:65656997-65657016 None:intergenic 25.0%
!! CCTTAAAATCTTTTATATCG+CGG + chr4_2:65657222-65657241 Msa0616000:intron 25.0%
! TGTAACAAGTAACAACTTAT+AGG - chr4_2:65657364-65657383 None:intergenic 25.0%
! TTCATGAATAATATTGAGCA+TGG - chr4_2:65657406-65657425 None:intergenic 25.0%
! TGAATCATATAGGTTATCAA+AGG + chr4_2:65657422-65657441 Msa0616000:intron 25.0%
! AAAATTGGAAGTTCATTATG+AGG + chr4_2:65657958-65657977 Msa0616000:intron 25.0%
!! TTCTTTAAGAACTTAATCCA+AGG - chr4_2:65658141-65658160 None:intergenic 25.0%
! TGGATTAAGTTCTTAAAGAA+AGG + chr4_2:65658141-65658160 Msa0616000:intron 25.0%
! GTGTTGTGTCAATAATTTAT+AGG + chr4_2:65658450-65658469 Msa0616000:intron 25.0%
! GAAAAATTGATGCAGAAATA+AGG - chr4_2:65658511-65658530 None:intergenic 25.0%
! CAAACTTGTAAATTAAAAGG+GGG - chr4_2:65658709-65658728 None:intergenic 25.0%
TAGTAGTGGTATGAATATTG+TGG - chr4_2:65656363-65656382 None:intergenic 30.0%
! TTGGAATGGTTAAGTTTTTG+GGG - chr4_2:65656484-65656503 None:intergenic 30.0%
ATGTTGTTAGTGAATTGGAA+TGG - chr4_2:65656498-65656517 None:intergenic 30.0%
AGAACATGTTGTTAGTGAAT+TGG - chr4_2:65656503-65656522 None:intergenic 30.0%
TGTGATAAAATTGTAGGCTA+TGG + chr4_2:65656709-65656728 Msa0616000:CDS 30.0%
TGTTAAGGGACAACTTATTA+AGG + chr4_2:65656741-65656760 Msa0616000:CDS 30.0%
GTGACAACAAATGACAAAAA+TGG - chr4_2:65656770-65656789 None:intergenic 30.0%
ATAATGGTCAAATTAAGCAC+GGG - chr4_2:65656981-65657000 None:intergenic 30.0%
TTAATGTTAGGCACATTATG+TGG + chr4_2:65657002-65657021 Msa0616000:intron 30.0%
TAATGTTAGGCACATTATGT+GGG + chr4_2:65657003-65657022 Msa0616000:intron 30.0%
AGGTATCATAATTCTATCCA+TGG + chr4_2:65657103-65657122 Msa0616000:intron 30.0%
! GTAACGACAATTTAAAACCA+TGG - chr4_2:65657123-65657142 None:intergenic 30.0%
! CCGCGATATAAAAGATTTTA+AGG - chr4_2:65657225-65657244 None:intergenic 30.0%
CTGTTAACTGCAGTAAAAAA+TGG - chr4_2:65657264-65657283 None:intergenic 30.0%
!! CTCATAAGACCTTTACTTTT+TGG - chr4_2:65657304-65657323 None:intergenic 30.0%
TCATATAGGTTATCAAAGGA+TGG + chr4_2:65657426-65657445 Msa0616000:intron 30.0%
CATATAGGTTATCAAAGGAT+GGG + chr4_2:65657427-65657446 Msa0616000:intron 30.0%
TTTACAGTGACTGAAAAAAC+AGG - chr4_2:65657501-65657520 None:intergenic 30.0%
! TATTTTGCACTTTGTTGAAG+TGG + chr4_2:65657742-65657761 Msa0616000:intron 30.0%
TTGTTGAAGTGGTTCTTATA+AGG + chr4_2:65657753-65657772 Msa0616000:intron 30.0%
!! AGAACTGATTAAATTTGCTG+TGG + chr4_2:65657897-65657916 Msa0616000:intron 30.0%
!! ATTAAATTTGCTGTGGCATA+AGG + chr4_2:65657904-65657923 Msa0616000:intron 30.0%
GGCAGAATAAGAAAGAAAAT+TGG + chr4_2:65657943-65657962 Msa0616000:intron 30.0%
ATGACATATCTCTTTAAACC+TGG + chr4_2:65658052-65658071 Msa0616000:intron 30.0%
AATACTTAACAAGTACATCC+AGG - chr4_2:65658073-65658092 None:intergenic 30.0%
AATAGAGAAATTGGAATCCT+TGG + chr4_2:65658121-65658140 Msa0616000:intron 30.0%
CTCACGTTCTTTATGATTAA+AGG - chr4_2:65658211-65658230 None:intergenic 30.0%
TTGAATGTAATCATGTGTGT+AGG - chr4_2:65658376-65658395 None:intergenic 30.0%
AACCAGGTATAAATTCACAT+TGG - chr4_2:65658538-65658557 None:intergenic 30.0%
GGGGAAAATAATAGTAATCT+CGG - chr4_2:65658690-65658709 None:intergenic 30.0%
CAAAAATGTAAATTCACAGC+TGG - chr4_2:65658751-65658770 None:intergenic 30.0%
AATAATCAAGTCATCCAATG+TGG - chr4_2:65658851-65658870 None:intergenic 30.0%
TTTCCACTGAATTCAGGATA+TGG - chr4_2:65656411-65656430 None:intergenic 35.0%
AACTCATTTCCACTGAATTC+AGG - chr4_2:65656417-65656436 None:intergenic 35.0%
! TTCTCCTTTTGTACAAGAAC+TGG - chr4_2:65656547-65656566 None:intergenic 35.0%
CTGAAAAGAAGAGAAGCAAT+AGG + chr4_2:65656571-65656590 Msa0616000:CDS 35.0%
AATGTTAGGCACATTATGTG+GGG + chr4_2:65657004-65657023 Msa0616000:intron 35.0%
! AGGTCTTATGAGATGTTGAT+TGG + chr4_2:65657312-65657331 Msa0616000:intron 35.0%
GGTTCTTATAAGGATCATGT+TGG + chr4_2:65657763-65657782 Msa0616000:intron 35.0%
AGGATGAAGTAATGGTTACT+TGG + chr4_2:65657821-65657840 Msa0616000:intron 35.0%
!!! GAAATAATTGCCGGTTTTGA+CGG + chr4_2:65658410-65658429 Msa0616000:intron 35.0%
AAGGCAATGTATAACTCTTC+AGG - chr4_2:65658492-65658511 None:intergenic 35.0%
AGCCAATGTGAATTTATACC+TGG + chr4_2:65658533-65658552 Msa0616000:intron 35.0%
!!! TTTATACCTGGTTTTGATGC+AGG + chr4_2:65658545-65658564 Msa0616000:intron 35.0%
AAGCATGATTTACAACTCCA+TGG + chr4_2:65658624-65658643 Msa0616000:exon 35.0%
TTACCTTCCTTGAATTTCCT+TGG + chr4_2:65658655-65658674 Msa0616000:three_prime_UTR 35.0%
! GCTCTAGATCACATTGATAA+AGG + chr4_2:65658770-65658789 Msa0616000:three_prime_UTR 35.0%
AGTATCATCAACTTCCACAT+TGG + chr4_2:65658834-65658853 Msa0616000:three_prime_UTR 35.0%
!! AGTACACTGTCAGCTTTAAA+AGG + chr4_2:65658938-65658957 Msa0616000:three_prime_UTR 35.0%
!!! GTTTTTGGGTGAGTTAGTAG+TGG - chr4_2:65656377-65656396 None:intergenic 40.0%
TGAATTCAGGATATGGCCAT+GGG - chr4_2:65656404-65656423 None:intergenic 40.0%
TCACTAGCACCATATTCAGT+TGG + chr4_2:65656436-65656455 Msa0616000:CDS 40.0%
CACTAGCACCATATTCAGTT+GGG + chr4_2:65656437-65656456 Msa0616000:CDS 40.0%
ACCACCAGTTCTTGTACAAA+AGG + chr4_2:65656540-65656559 Msa0616000:intron 40.0%
! TCCTTTTGTACAAGAACTGG+TGG - chr4_2:65656544-65656563 None:intergenic 40.0%
ATGTCGAAGACCAAAACTCA+AGG - chr4_2:65656602-65656621 None:intergenic 40.0%
GCTGTTGCAGTAGGTATTAT+TGG - chr4_2:65656637-65656656 None:intergenic 40.0%
GGAGCTACAGTTAATTCACA+TGG - chr4_2:65656673-65656692 None:intergenic 40.0%
GAATTAACTGTAGCTCCTTC+AGG + chr4_2:65656676-65656695 Msa0616000:CDS 40.0%
TCACAATAAGAAAGGCCTGA+AGG - chr4_2:65656694-65656713 None:intergenic 40.0%
CAAATTAAGCACGGGACAAA+GGG - chr4_2:65656973-65656992 None:intergenic 40.0%
TCAAATTAAGCACGGGACAA+AGG - chr4_2:65656974-65656993 None:intergenic 40.0%
AAGCCACTTACATTTCGTGT+TGG + chr4_2:65657072-65657091 Msa0616000:intron 40.0%
ACACCAACACGAAATGTAAG+TGG - chr4_2:65657078-65657097 None:intergenic 40.0%
! CTTACATTTCGTGTTGGTGT+TGG + chr4_2:65657078-65657097 Msa0616000:intron 40.0%
! TTTTATATCGCGGCTGCAAT+AGG + chr4_2:65657232-65657251 Msa0616000:intron 40.0%
GTTATCAAAGGATGGGATGT+AGG + chr4_2:65657434-65657453 Msa0616000:CDS 40.0%
AAACAGGTACCTGTAAGCAT+AGG - chr4_2:65657485-65657504 None:intergenic 40.0%
TTGAAGCTTCCTCCAGAATT+TGG + chr4_2:65657593-65657612 Msa0616000:CDS 40.0%
CTTCCTCCAGAATTTGGATA+TGG + chr4_2:65657599-65657618 Msa0616000:CDS 40.0%
CTTGAGCCATATCCAAATTC+TGG - chr4_2:65657608-65657627 None:intergenic 40.0%
GAATTTGGATATGGCTCAAG+AGG + chr4_2:65657608-65657627 Msa0616000:CDS 40.0%
!!! TCATGTTGGCCTTTTGTCTT+CGG + chr4_2:65657777-65657796 Msa0616000:intron 40.0%
ACCATTACTTCATCCTAGAG+TGG - chr4_2:65657817-65657836 None:intergenic 40.0%
TAAGGATGAAGAGTAGGAAG+TGG + chr4_2:65657922-65657941 Msa0616000:intron 40.0%
AACCAAGCAAAGTGTGTTGA+TGG + chr4_2:65658298-65658317 Msa0616000:intron 40.0%
ATCCATCAACACACTTTGCT+TGG - chr4_2:65658303-65658322 None:intergenic 40.0%
TGATATGGATCCGTCAAAAC+CGG - chr4_2:65658423-65658442 None:intergenic 40.0%
TCTCCAAGGAAATTCAAGGA+AGG - chr4_2:65658661-65658680 None:intergenic 40.0%
CCAATCTCCAAGGAAATTCA+AGG - chr4_2:65658665-65658684 None:intergenic 40.0%
CCTTGAATTTCCTTGGAGAT+TGG + chr4_2:65658662-65658681 Msa0616000:three_prime_UTR 40.0%
GAATTCAGGATATGGCCATG+GGG - chr4_2:65656403-65656422 None:intergenic 45.0%
CTGAATTCAGGATATGGCCA+TGG - chr4_2:65656405-65656424 None:intergenic 45.0%
TGGCCATATCCTGAATTCAG+TGG + chr4_2:65656405-65656424 Msa0616000:CDS 45.0%
AGGCAAGTCCCAACTGAATA+TGG - chr4_2:65656448-65656467 None:intergenic 45.0%
!!! GTTAAGTTTTTGGGGCTGCA+AGG - chr4_2:65656476-65656495 None:intergenic 45.0%
CAAGAACTGGTGGTTGTTGT+TGG - chr4_2:65656534-65656553 None:intergenic 45.0%
! ATAGGCCTCTCCTTGAGTTT+TGG + chr4_2:65656589-65656608 Msa0616000:CDS 45.0%
GAAGACCAAAACTCAAGGAG+AGG - chr4_2:65656597-65656616 None:intergenic 45.0%
AATTGTAGGCTATGGTCCTC+AGG + chr4_2:65656717-65656736 Msa0616000:CDS 45.0%
TATGGTCCTCAGGCTGTTAA+GGG + chr4_2:65656727-65656746 Msa0616000:CDS 45.0%
TATGTGGGGAGATTGGAGAA+TGG + chr4_2:65657018-65657037 Msa0616000:CDS 45.0%
!! ATTTCGTGTTGGTGTTGGAG+AGG + chr4_2:65657083-65657102 Msa0616000:intron 45.0%
! CATTGGACGCATTTTCTCTC+TGG - chr4_2:65657160-65657179 None:intergenic 45.0%
AAGCGCAATTTCGACTGCAT+TGG - chr4_2:65657177-65657196 None:intergenic 45.0%
! GGATGGGATGTAGGCATTTT+AGG + chr4_2:65657443-65657462 Msa0616000:CDS 45.0%
! TGGGATGTAGGCATTTTAGG+AGG + chr4_2:65657446-65657465 Msa0616000:CDS 45.0%
!! GTAGGCATTTTAGGAGGTGA+TGG + chr4_2:65657452-65657471 Msa0616000:CDS 45.0%
GGAATTCCTCCTATGCTTAC+AGG + chr4_2:65657473-65657492 Msa0616000:CDS 45.0%
GAGCCATATCCAAATTCTGG+AGG - chr4_2:65657605-65657624 None:intergenic 45.0%
TCAAGAGGAGCTGGTTGTAA+AGG + chr4_2:65657623-65657642 Msa0616000:intron 45.0%
TAGCACCAACCGAAGACAAA+AGG - chr4_2:65657789-65657808 None:intergenic 45.0%
!! TGTCTTCGGTTGGTGCTAAT+AGG + chr4_2:65657791-65657810 Msa0616000:intron 45.0%
!! GCCACTCTAGGATGAAGTAA+TGG + chr4_2:65657813-65657832 Msa0616000:intron 45.0%
GTGGCATAAGGATGAAGAGT+AGG + chr4_2:65657916-65657935 Msa0616000:intron 45.0%
CATGTCAAGTAGCTACTAGC+TGG - chr4_2:65658035-65658054 None:intergenic 45.0%
! CATGTGTGTAGGTGTCATGT+CGG - chr4_2:65658365-65658384 None:intergenic 45.0%
CATGAACCTGCATCAAAACC+AGG - chr4_2:65658554-65658573 None:intergenic 45.0%
!! TCGAATAAGAGTACCGCATC+GGG - chr4_2:65658587-65658606 None:intergenic 45.0%
!! GTCGAATAAGAGTACCGCAT+CGG - chr4_2:65658588-65658607 None:intergenic 45.0%
GGAAGGTAATTTGACTGCCA+TGG - chr4_2:65658644-65658663 None:intergenic 45.0%
TCACCCAAAAACAGACCCCA+TGG + chr4_2:65656385-65656404 Msa0616000:CDS 50.0%
!! TGGCCATGGGGTCTGTTTTT+GGG - chr4_2:65656391-65656410 None:intergenic 50.0%
! ATGGCCATGGGGTCTGTTTT+TGG - chr4_2:65656392-65656411 None:intergenic 50.0%
!!! AAGTTTTTGGGGCTGCAAGG+AGG - chr4_2:65656473-65656492 None:intergenic 50.0%
! CTGGTGGTTGTTGTTGGACT+TGG - chr4_2:65656528-65656547 None:intergenic 50.0%
CTATGGTCCTCAGGCTGTTA+AGG + chr4_2:65656726-65656745 Msa0616000:CDS 50.0%
AGTTGTCCCTTAACAGCCTG+AGG - chr4_2:65656736-65656755 None:intergenic 50.0%
GGCACATTATGTGGGGAGAT+TGG + chr4_2:65657011-65657030 Msa0616000:intron 50.0%
TTCGACAGCAGCTACAATCG+TGG + chr4_2:65657048-65657067 Msa0616000:intron 50.0%
TCGAAATTGCGCTTGTGACG+CGG + chr4_2:65657183-65657202 Msa0616000:intron 50.0%
CAGGTACCTGTAAGCATAGG+AGG - chr4_2:65657482-65657501 None:intergenic 50.0%
AGAGGAGCTGGTTGTAAAGG+AGG + chr4_2:65657626-65657645 Msa0616000:intron 50.0%
!!! GTTGGCCTTTTGTCTTCGGT+TGG + chr4_2:65657781-65657800 Msa0616000:intron 50.0%
! TGGTGCTAATAGGCCACTCT+AGG + chr4_2:65657801-65657820 Msa0616000:intron 50.0%
CACAACACACGACGCTGATA+TGG - chr4_2:65658438-65658457 None:intergenic 50.0%
! ATGTGTCATTCCTCCCGATG+CGG + chr4_2:65658571-65658590 Msa0616000:CDS 50.0%
!! AATAAGAGTACCGCATCGGG+AGG - chr4_2:65658584-65658603 None:intergenic 50.0%
AATCTCGGCTCCAATCTCCA+AGG - chr4_2:65658675-65658694 None:intergenic 50.0%
GCTTCAGCTGCTGTTGCAGT+AGG - chr4_2:65656646-65656665 None:intergenic 55.0%
GGATATGGCTCAAGAGGAGC+TGG + chr4_2:65657614-65657633 Msa0616000:CDS 55.0%
! TTTGGGGCTGCAAGGAGGTG+AGG - chr4_2:65656468-65656487 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 65656355 65658976 65656355 ID=Msa0616000;Name=Msa0616000
chr4_2 mRNA 65656355 65658976 65656355 ID=Msa0616000-mRNA-1;Parent=Msa0616000;Name=Msa0616000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.4|0.33|1|0.4|0.16|6|345|204
chr4_2 exon 65656355 65656552 65656355 ID=Msa0616000-mRNA-1:exon:18596;Parent=Msa0616000-mRNA-1
chr4_2 exon 65656562 65656762 65656562 ID=Msa0616000-mRNA-1:exon:18597;Parent=Msa0616000-mRNA-1
chr4_2 exon 65657012 65657044 65657012 ID=Msa0616000-mRNA-1:exon:18598;Parent=Msa0616000-mRNA-1
chr4_2 exon 65657434 65657494 65657434 ID=Msa0616000-mRNA-1:exon:18599;Parent=Msa0616000-mRNA-1
chr4_2 exon 65657579 65657635 65657579 ID=Msa0616000-mRNA-1:exon:18600;Parent=Msa0616000-mRNA-1
chr4_2 exon 65658567 65658976 65658567 ID=Msa0616000-mRNA-1:exon:18601;Parent=Msa0616000-mRNA-1
chr4_2 CDS 65656355 65656552 65656355 ID=Msa0616000-mRNA-1:cds;Parent=Msa0616000-mRNA-1
chr4_2 CDS 65656562 65656762 65656562 ID=Msa0616000-mRNA-1:cds;Parent=Msa0616000-mRNA-1
chr4_2 CDS 65657012 65657044 65657012 ID=Msa0616000-mRNA-1:cds;Parent=Msa0616000-mRNA-1
chr4_2 CDS 65657434 65657494 65657434 ID=Msa0616000-mRNA-1:cds;Parent=Msa0616000-mRNA-1
chr4_2 CDS 65657579 65657635 65657579 ID=Msa0616000-mRNA-1:cds;Parent=Msa0616000-mRNA-1
chr4_2 CDS 65658567 65658631 65658567 ID=Msa0616000-mRNA-1:cds;Parent=Msa0616000-mRNA-1
chr4_2 three_prime_UTR 65658632 65658976 65658632 ID=Msa0616000-mRNA-1:three_prime_utr;Parent=Msa0616000-mRNA-1
Gene Sequence

>Msa0616000

ATGAGCCACAATATTCATACCACTACTAACTCACCCAAAAACAGACCCCATGGCCATATCCTGAATTCAGTGGAAATGAGTTCACTAGCACCATATTCAGTTGGGACTTGCCTCACCTCCTTGCAGCCCCAAAAACTTAACCATTCCAATTCACTAACAACATGTTCTGTCCAAGTCCAACAACAACCACCAGTTCTTGAGAATCAACTGAAAAGAAGAGAAGCAATAGGCCTCTCCTTGAGTTTTGGTCTTCGACATTCTTTATTGCAACCAATAATACCTACTGCAACAGCAGCTGAAGCAGTTCCATGTGAATTAACTGTAGCTCCTTCAGGCCTTTCTTATTGTGATAAAATTGTAGGCTATGGTCCTCAGGCTGTTAAGGGACAACTTATTAAGGCACATTATGTGGGGAGATTGGAGAATGGAAAAGTTATCAAAGGATGGGATGTAGGCATTTTAGGAGGTGATGGAATTCCTCCTATGCTTACAGGAGGTAAACGTACATTGAAGCTTCCTCCAGAATTTGGATATGGCTCAAGAGGAGCTGGTTCATGTGTCATTCCTCCCGATGCGGTACTCTTATTCGACGTAGAGTTTGTCAGCAAAGCATGA

Protein sequence

>Msa0616000

MSHNIHTTTNSPKNRPHGHILNSVEMSSLAPYSVGTCLTSLQPQKLNHSNSLTTCSVQVQQQPPVLENQLKRREAIGLSLSFGLRHSLLQPIIPTATAAEAVPCELTVAPSGLSYCDKIVGYGPQAVKGQLIKAHYVGRLENGKVIKGWDVGILGGDGIPPMLTGGKRTLKLPPEFGYGSRGAGSCVIPPDAVLLFDVEFVSKA*