AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606380 MtrunA17_Chr4g0036031 96.857 350 11 0 1 350 1 350 0.0 696
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606380 AT2G21280.2 79.874 318 61 1 32 349 47 361 0.0 530
Msa0606380 AT2G21280.1 78.116 329 68 2 21 349 22 346 0.0 529

Find 117 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGAAATAATTGCTTTA+AGG 0.095577 4_2:+52659368 None:intergenic
GCAACAGCTGTTGGTTATTA+TGG 0.218240 4_2:-52661581 Msa0606380:intron
CTGTCATATTCTTTATTCTT+TGG 0.228424 4_2:-52659327 Msa0606380:three_prime_UTR
TGGTTTCTTCGTGGTTAATT+TGG 0.243842 4_2:+52664254 None:intergenic
GAATGAGAAACCCAGCTTCT+TGG 0.260914 4_2:+52659414 None:intergenic
TTCAACAGGAGTTGTGAATT+TGG 0.265572 4_2:-52662014 Msa0606380:CDS
TGAATACAATCTTTCCATTC+TGG 0.270270 4_2:+52662040 None:intergenic
TCAAGAAATAATTGCTTTAA+GGG 0.286542 4_2:+52659369 None:intergenic
CGAACAGCTGGGAAATGTTT+TGG 0.287512 4_2:-52659628 Msa0606380:CDS
AGGTTGTAGATTTGATAAAA+AGG 0.289421 4_2:-52661640 Msa0606380:CDS
TATTCTTTATTCTTTGGAAT+TGG 0.299844 4_2:-52659321 Msa0606380:three_prime_UTR
TTTGCACTCAAGGCTGTTCT+TGG 0.310048 4_2:-52659576 Msa0606380:CDS
TATTCTTCTGCCATTGAGTT+TGG 0.313578 4_2:-52659144 Msa0606380:three_prime_UTR
CCCTCTTGTTAATTAATTCT+CGG 0.317186 4_2:+52664182 None:intergenic
TCGGACAGTCGCACGGGATT+TGG 0.324179 4_2:+52659657 None:intergenic
CCTCTCTTCATGATGTTTGC+TGG 0.326526 4_2:-52660567 Msa0606380:CDS
ATTCGCATCGGTGTTGTTCT+TGG 0.330353 4_2:-52660758 Msa0606380:CDS
AGTGAATAGTTTACCTTTGT+AGG 0.347670 4_2:+52660179 None:intergenic
TGAAATTCGACCCAAAGTTT+TGG 0.354784 4_2:-52661609 Msa0606380:CDS
GTCCGAATTGTGCGAACAGC+TGG 0.359974 4_2:-52659640 Msa0606380:CDS
AGGCTAGGAGGTTCAGAGTT+TGG 0.361453 4_2:-52663800 Msa0606380:CDS
GGTAAAGATGGTGGAGCATT+AGG 0.364438 4_2:-52660737 Msa0606380:intron
ATAGCAGAAGATTAATCTTA+TGG 0.371514 4_2:-52664122 Msa0606380:exon
CTTTAGATTTAGAGCGTGTC+AGG 0.375570 4_2:+52662374 None:intergenic
TCCATCAGGAAAGGATTATC+TGG 0.378597 4_2:-52661331 Msa0606380:CDS
TCTTTCTTCAAATTGACAAT+AGG 0.382025 4_2:-52659222 Msa0606380:three_prime_UTR
GATTGTATTCAGGGTTCAAC+AGG 0.387898 4_2:-52662028 Msa0606380:CDS
CAAATGATCATATCTGTAAC+TGG 0.388348 4_2:-52662856 Msa0606380:CDS
AGAATGGAAAGATTGTATTC+AGG 0.393704 4_2:-52662038 Msa0606380:CDS
TGTTGCACTAACCAAAACTT+TGG 0.399793 4_2:+52661598 None:intergenic
TCATTGAGATTATTCTTGTA+TGG 0.400953 4_2:+52664234 None:intergenic
GAAGACCATCTGGTACTTAT+CGG 0.402363 4_2:+52661983 None:intergenic
TTTCCAGGAGTCAAGATTGC+AGG 0.404234 4_2:-52662067 Msa0606380:CDS
TCCCAGCTGTTCGCACAATT+CGG 0.406560 4_2:+52659638 None:intergenic
CAGGTTCTCCTGGATTCATC+TGG 0.421588 4_2:-52660244 Msa0606380:CDS
GAATGGAAAGATTGTATTCA+GGG 0.421699 4_2:-52662037 Msa0606380:CDS
TCCCCTGCAATCTTGACTCC+TGG 0.430807 4_2:+52662064 None:intergenic
TCAACGGCGCTAAAGGCTAA+TGG 0.436080 4_2:-52660800 Msa0606380:CDS
ATATCTGTAACTGGAGCAAC+AGG 0.436339 4_2:-52662847 Msa0606380:CDS
AGAAAGAAATCAAGCAGAGC+AGG 0.436371 4_2:-52661852 Msa0606380:CDS
TTTGTATTAGGTGTTATCAA+TGG 0.439150 4_2:-52659687 Msa0606380:intron
GGGTCGTCCCTCATGGCTGC+CGG 0.447733 4_2:-52659607 Msa0606380:CDS
ACTTTGGGTCGAATTTCATC+TGG 0.451563 4_2:+52661614 None:intergenic
ATGTTTGCTGGTGGACCTCT+AGG 0.456570 4_2:-52660555 Msa0606380:CDS
TCCTACTCAAGCCAAGAAGC+TGG 0.458174 4_2:-52659425 Msa0606380:CDS
TTTCCAGTGAAAGACTTTCC+AGG 0.460284 4_2:-52662082 Msa0606380:intron
TCTGAACCTCCTAGCCTCTC+TGG 0.462277 4_2:+52663806 None:intergenic
ATCAAAGACTTGTGTCTCAC+TGG 0.467847 4_2:+52661362 None:intergenic
GCTGGTGGACCTCTAGGCTC+TGG 0.475747 4_2:-52660549 Msa0606380:CDS
GGTGCCTGACTTTGCACTCA+AGG 0.476036 4_2:-52659586 Msa0606380:CDS
ATGGGAATCAACGGCGCTAA+AGG 0.476364 4_2:-52660807 Msa0606380:CDS
TTTGATGAACAAAGTCCATC+AGG 0.481117 4_2:-52661345 Msa0606380:CDS
GACTGAGGTAGATGAAGAGA+AGG 0.488004 4_2:+52664055 None:intergenic
AATAGTTTACCTTTGTAGGA+TGG 0.497739 4_2:+52660183 None:intergenic
TCTGGTACTTATCGGCAATC+CGG 0.498322 4_2:+52661991 None:intergenic
ACAGCCTTGAGTGCAAAGTC+AGG 0.498905 4_2:+52659582 None:intergenic
GTTGCACTAACCAAAACTTT+GGG 0.504995 4_2:+52661599 None:intergenic
ACAGGAGTTGTGAATTTGGC+CGG 0.506650 4_2:-52662010 Msa0606380:CDS
CTCAAGGCTGTTCTTGGAGA+AGG 0.507833 4_2:-52659570 Msa0606380:CDS
CTCTTCATGATGTTTGCTGG+TGG 0.508061 4_2:-52660564 Msa0606380:CDS
AATAACCTCAGAAGACCATC+TGG 0.519010 4_2:+52661973 None:intergenic
CACAATTCGGACAGTCGCAC+GGG 0.519157 4_2:+52659651 None:intergenic
ATTCTTGTATGGTTTCTTCG+TGG 0.522476 4_2:+52664245 None:intergenic
AGATTGCAGGGGAACCAGAA+TGG 0.527962 4_2:-52662054 Msa0606380:CDS
TCAGGCACCGGCAGCCATGA+GGG 0.532338 4_2:+52659600 None:intergenic
TTGGTTAGTGCAACAGCTGT+TGG 0.534466 4_2:-52661590 Msa0606380:CDS
ATAAGTGGTGGATATGGAAA+TGG 0.535178 4_2:-52664291 None:intergenic
TATGGAAATGGTGGTTGTTG+TGG 0.542627 4_2:-52664279 Msa0606380:five_prime_UTR
GCCAGATAATCCTTTCCTGA+TGG 0.543384 4_2:+52661330 None:intergenic
CTCTAGGCTCTGGAAATCAA+TGG 0.544607 4_2:-52660539 Msa0606380:intron
CCTACTCAAGCCAAGAAGCT+GGG 0.546377 4_2:-52659424 Msa0606380:CDS
CCGAGAATTAATTAACAAGA+GGG 0.546707 4_2:-52664182 Msa0606380:five_prime_UTR
ACAAAAGTGGCCAAACTCAA+TGG 0.547289 4_2:+52659134 None:intergenic
GGTGTTGTTCTTGGTAAAGA+TGG 0.549228 4_2:-52660749 Msa0606380:CDS
TTGAGTGCAAAGTCAGGCAC+CGG 0.549528 4_2:+52659588 None:intergenic
TTCCAGGAGTCAAGATTGCA+GGG 0.551258 4_2:-52662066 Msa0606380:CDS
AAACTTGGCACAAGAATGAC+AGG 0.552676 4_2:+52659108 None:intergenic
AATGTCATCCAGATGAATCC+AGG 0.554187 4_2:+52660236 None:intergenic
GTTTGGTGTGACACTGATCA+AGG 0.555857 4_2:-52663783 Msa0606380:CDS
GAAAGAAATCAAGCAGAGCA+GGG 0.571813 4_2:-52661851 Msa0606380:CDS
GTAGAGCTACAGCTCTCACT+TGG 0.575595 4_2:-52664093 Msa0606380:CDS
GAATGACAGGTGGACAAAAG+TGG 0.577331 4_2:+52659121 None:intergenic
TTTACTAGACCAGAGAGGCT+AGG 0.580323 4_2:-52663815 Msa0606380:intron
AGGAAAGGATTATCTGGCTG+AGG 0.580461 4_2:-52661325 Msa0606380:intron
TTGGTGCAAAAGCTGCAAGC+AGG 0.582005 4_2:-52662808 Msa0606380:intron
GCCGAGAATTAATTAACAAG+AGG 0.585377 4_2:-52664183 Msa0606380:five_prime_UTR
ATTCAAATATTCATATGTGA+AGG 0.592790 4_2:-52659395 Msa0606380:CDS
ATTGAAACTTACAGAGAGGA+GGG 0.592868 4_2:+52664033 None:intergenic
AATTGAAACTTACAGAGAGG+AGG 0.593597 4_2:+52664032 None:intergenic
TCCGAATTGTGCGAACAGCT+GGG 0.594868 4_2:-52659639 Msa0606380:CDS
CTTACAGAGAGGAGGGACTG+AGG 0.601342 4_2:+52664040 None:intergenic
AGTGGTGGATATGGAAATGG+TGG 0.602083 4_2:-52664288 None:intergenic
TTGCAGAGAATGGGAATCAA+CGG 0.604714 4_2:-52660816 Msa0606380:CDS
GCACAATTCGGACAGTCGCA+CGG 0.605041 4_2:+52659650 None:intergenic
TGAACAAAGTCCATCAGGAA+AGG 0.605642 4_2:-52661340 Msa0606380:CDS
GTCAGGCACCGGCAGCCATG+AGG 0.608739 4_2:+52659599 None:intergenic
TGACACTGATCAAGGCTCCA+AGG 0.608870 4_2:-52663775 Msa0606380:intron
ACTAGACCAGAGAGGCTAGG+AGG 0.612928 4_2:-52663812 Msa0606380:intron
AATGCCACTGACATGTTGGA+AGG 0.613399 4_2:+52659284 None:intergenic
ATGTCAGTGGCATTCATCAA+CGG 0.614254 4_2:-52659275 Msa0606380:three_prime_UTR
GTTGTTCTTGGTAAAGATGG+TGG 0.616711 4_2:-52660746 Msa0606380:CDS
CCCAGCTTCTTGGCTTGAGT+AGG 0.629518 4_2:+52659424 None:intergenic
GATGAATGCCACTGACATGT+TGG 0.633783 4_2:+52659280 None:intergenic
CGAGAATTAATTAACAAGAG+GGG 0.636054 4_2:-52664181 Msa0606380:five_prime_UTR
CAACCCTTCCAACATGTCAG+TGG 0.637551 4_2:-52659288 Msa0606380:three_prime_UTR
GGCTAATGGAGATGTTAGAG+TGG 0.643529 4_2:-52660786 Msa0606380:CDS
CTATCAAATCCATCCTACAA+AGG 0.644854 4_2:-52660192 Msa0606380:intron
CATTGATTTCCAGAGCCTAG+AGG 0.647077 4_2:+52660540 None:intergenic
AGAGTGGCTCTAATTCGCAT+CGG 0.649797 4_2:-52660770 Msa0606380:CDS
GATTGCCGATAAGTACCAGA+TGG 0.655738 4_2:-52661988 Msa0606380:CDS
AAGTACCAGATGGTCTTCTG+AGG 0.661589 4_2:-52661978 Msa0606380:intron
CCAGCAAACATCATGAAGAG+AGG 0.663821 4_2:+52660567 None:intergenic
ATGTTGGAAGGGTTGATGCA+AGG 0.664486 4_2:+52659296 None:intergenic
TCTTGGAGAAGGTGCTACTG+TGG 0.672114 4_2:-52659559 Msa0606380:intron
TCCAGGAGTCAAGATTGCAG+GGG 0.681901 4_2:-52662065 Msa0606380:CDS
ATGCCACTGACATGTTGGAA+GGG 0.683373 4_2:+52659285 None:intergenic
CTTGGCACAAGAATGACAGG+TGG 0.700422 4_2:+52659111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTAAAATAAAATTTT+AGG - chr4_2:52663044-52663063 Msa0606380:intron 0.0%
!!! ATTTTTTTTTTTTTTTTGCA+TGG + chr4_2:52662101-52662120 None:intergenic 10.0%
!!! TAATATTTTGGATAAAATGT+TGG - chr4_2:52659742-52659761 Msa0606380:intron 15.0%
!! AAAATCATGTTTAAATAGTA+TGG - chr4_2:52659864-52659883 Msa0606380:intron 15.0%
!!! GTTCCAATTAAATATTTTAT+TGG - chr4_2:52659970-52659989 Msa0606380:intron 15.0%
!! ATTTATTTGTTTATCATAGA+AGG - chr4_2:52660494-52660513 Msa0606380:intron 15.0%
!!! TATATATTTTGAAACATAAG+AGG + chr4_2:52660557-52660576 None:intergenic 15.0%
!! AGAATTCAAATGATATAAAT+AGG + chr4_2:52660694-52660713 None:intergenic 15.0%
!!! TTTTGATCTTTTGAAAAAAT+TGG + chr4_2:52660914-52660933 None:intergenic 15.0%
!! AAATTATGAATCTTTGTATT+AGG - chr4_2:52663466-52663485 Msa0606380:intron 15.0%
!! AAAAATACAATGATTGATCA+CGG - chr4_2:52659673-52659692 Msa0606380:CDS 20.0%
!!! TGAGGTGAAATTTAATATTT+TGG - chr4_2:52659730-52659749 Msa0606380:intron 20.0%
!! TAATTAGTCAAAGTTTAAAG+AGG + chr4_2:52659805-52659824 None:intergenic 20.0%
!! CAGCCAATAAAATATTTAAT+TGG + chr4_2:52659976-52659995 None:intergenic 20.0%
!!! TGAGGCAAAATTTAATATTT+TGG + chr4_2:52660149-52660168 None:intergenic 20.0%
!!! TTATCTCTGGTTTTTATTAT+TGG - chr4_2:52660236-52660255 Msa0606380:CDS 20.0%
!! GTATAAATGTACTAAAAAAC+GGG + chr4_2:52660443-52660462 None:intergenic 20.0%
!! GGTATAAATGTACTAAAAAA+CGG + chr4_2:52660444-52660463 None:intergenic 20.0%
!!! ATATAACGTTATAGATTTTG+AGG - chr4_2:52660572-52660591 Msa0606380:CDS 20.0%
!! TTAATCGGTTAATTCTTAAT+TGG - chr4_2:52661058-52661077 Msa0606380:intron 20.0%
!! TTAAATAATATTCCCTCAAT+TGG + chr4_2:52661370-52661389 None:intergenic 20.0%
!! AATTCAATTTACTAATGTCA+TGG - chr4_2:52662819-52662838 Msa0606380:CDS 20.0%
!! ATTCAAATATTCATATGTGA+AGG - chr4_2:52663770-52663789 Msa0606380:intron 20.0%
!! TCAAGAAATAATTGCTTTAA+GGG + chr4_2:52663799-52663818 None:intergenic 20.0%
!! TTCAAGAAATAATTGCTTTA+AGG + chr4_2:52663800-52663819 None:intergenic 20.0%
!!! TATTCTTTATTCTTTGGAAT+TGG - chr4_2:52663844-52663863 Msa0606380:intron 20.0%
! TCATTGAGATTATTCTTGTA+TGG + chr4_2:52658934-52658953 None:intergenic 25.0%
! ATAGCAGAAGATTAATCTTA+TGG - chr4_2:52659043-52659062 Msa0606380:three_prime_UTR 25.0%
!! AGTTTCAATTTTCACTTTCT+CGG - chr4_2:52659146-52659165 Msa0606380:three_prime_UTR 25.0%
! GAAAAGAAGTCAAATCAAAT+GGG + chr4_2:52659438-52659457 None:intergenic 25.0%
! TGAAAAGAAGTCAAATCAAA+TGG + chr4_2:52659439-52659458 None:intergenic 25.0%
!! TAAAGTTTTACTTCATGCTA+AGG - chr4_2:52659471-52659490 Msa0606380:intron 25.0%
! AAGGTACAAGAGTTAATATT+TGG - chr4_2:52659767-52659786 Msa0606380:intron 25.0%
!! ATTCATATTCGGTGATAAAT+GGG + chr4_2:52659937-52659956 None:intergenic 25.0%
! TGTTGAGTATGATTCATATT+CGG + chr4_2:52659948-52659967 None:intergenic 25.0%
! TTGGCTAATAATCTATTGTA+AGG + chr4_2:52660066-52660085 None:intergenic 25.0%
! ATTATTAGCCAAGTATAAAG+AGG - chr4_2:52660074-52660093 Msa0606380:intron 25.0%
!!! AGGTTTTATAGGTAAAAGAT+TGG - chr4_2:52660338-52660357 Msa0606380:intron 25.0%
! ATTATGAAGCAAATGTAGAA+AGG + chr4_2:52660415-52660434 None:intergenic 25.0%
!!! ATGATATATATGAGAGCATT+GGG + chr4_2:52660476-52660495 None:intergenic 25.0%
!! AATGATATATATGAGAGCAT+TGG + chr4_2:52660477-52660496 None:intergenic 25.0%
!! TAAAGCAGAACTAATTTTTC+CGG - chr4_2:52660809-52660828 Msa0606380:CDS 25.0%
! TAATATATTACCTTCTTACC+CGG + chr4_2:52660831-52660850 None:intergenic 25.0%
! GATAAAGGTAAGTTAGATTT+AGG + chr4_2:52660942-52660961 None:intergenic 25.0%
! ATATGGTGCTTATAAGATAA+AGG + chr4_2:52660957-52660976 None:intergenic 25.0%
! ATACTCCACTCTAAATTAAT+CGG - chr4_2:52661043-52661062 Msa0606380:intron 25.0%
! ATTAACCGATTAATTTAGAG+TGG + chr4_2:52661051-52661070 None:intergenic 25.0%
! ATTTATTCATTTCATTGCGA+AGG - chr4_2:52661505-52661524 Msa0606380:intron 25.0%
! AGGTTGTAGATTTGATAAAA+AGG - chr4_2:52661525-52661544 Msa0606380:intron 25.0%
! GGTTGTAGATTTGATAAAAA+GGG - chr4_2:52661526-52661545 Msa0606380:intron 25.0%
!! GTTAGAAAATGTATTGCTTT+TGG - chr4_2:52661698-52661717 Msa0606380:intron 25.0%
!! TCTGATAATCCTCTATATTT+TGG - chr4_2:52662120-52662139 Msa0606380:intron 25.0%
!! CTGATAATCCTCTATATTTT+GGG - chr4_2:52662121-52662140 Msa0606380:intron 25.0%
! TGATTACATGTTATTAACTG+AGG - chr4_2:52662177-52662196 Msa0606380:intron 25.0%
! AGGTTCAAAGATGTAATTAT+CGG + chr4_2:52662561-52662580 None:intergenic 25.0%
!!! TGTATAAGTATTGGATTAAG+AGG + chr4_2:52662697-52662716 None:intergenic 25.0%
! TGTAGTAGAAAATTGTTTGA+TGG + chr4_2:52662724-52662743 None:intergenic 25.0%
!!! TCTTTTTTGTTTTTCCATAC+AGG - chr4_2:52662902-52662921 Msa0606380:intron 25.0%
! ATGAATGATTTGATGAGTTT+AGG - chr4_2:52663149-52663168 Msa0606380:intron 25.0%
! GGAAATAAATTATCCAAACA+TGG + chr4_2:52663175-52663194 None:intergenic 25.0%
! ACATAAATACTAACATGACA+GGG + chr4_2:52663196-52663215 None:intergenic 25.0%
! TACATAAATACTAACATGAC+AGG + chr4_2:52663197-52663216 None:intergenic 25.0%
!!! ATAACTTAGTCTTGATTAAC+TGG - chr4_2:52663417-52663436 Msa0606380:intron 25.0%
!! TTTGTATTAGGTGTTATCAA+TGG - chr4_2:52663478-52663497 Msa0606380:intron 25.0%
! TTCATATTAGAAGATCGATA+TGG + chr4_2:52663665-52663684 None:intergenic 25.0%
! CTGTCATATTCTTTATTCTT+TGG - chr4_2:52663838-52663857 Msa0606380:intron 25.0%
! TCTTTCTTCAAATTGACAAT+AGG - chr4_2:52663943-52663962 Msa0606380:intron 25.0%
! GCAATACTGATATAAAAACT+TGG + chr4_2:52664075-52664094 None:intergenic 25.0%
CCCTCTTGTTAATTAATTCT+CGG + chr4_2:52658986-52659005 None:intergenic 30.0%
CCGAGAATTAATTAACAAGA+GGG - chr4_2:52658983-52659002 Msa0606380:three_prime_UTR 30.0%
CGAGAATTAATTAACAAGAG+GGG - chr4_2:52658984-52659003 Msa0606380:three_prime_UTR 30.0%
GAAAATTGAAACTTACAGAG+AGG + chr4_2:52659139-52659158 None:intergenic 30.0%
!! AAATTTGTTTGTAGCCTTGT+AGG + chr4_2:52659314-52659333 None:intergenic 30.0%
CCAAATTATAGAACATACCT+TGG + chr4_2:52659410-52659429 None:intergenic 30.0%
CCAAGGTATGTTCTATAATT+TGG - chr4_2:52659407-52659426 Msa0606380:CDS 30.0%
! GTTTGTTAGCATAGAAAATC+CGG - chr4_2:52659627-52659646 Msa0606380:CDS 30.0%
!! TTATCTTCTTACTTTAGAGC+CGG + chr4_2:52659649-52659668 None:intergenic 30.0%
TTTGGATAAAATGTTGGACA+AGG - chr4_2:52659748-52659767 Msa0606380:intron 30.0%
! GATTCATATTCGGTGATAAA+TGG + chr4_2:52659938-52659957 None:intergenic 30.0%
ACATGTTCAAAGTTTATCTC+TGG - chr4_2:52660223-52660242 Msa0606380:CDS 30.0%
CAAATGATCATATCTGTAAC+TGG - chr4_2:52660309-52660328 Msa0606380:intron 30.0%
! TTTATCATAGAAGGTGCATT+GGG - chr4_2:52660503-52660522 Msa0606380:intron 30.0%
CACATGATGCAAATATTTAC+CGG + chr4_2:52660614-52660633 None:intergenic 30.0%
! AAAGCAGAACTAATTTTTCC+GGG - chr4_2:52660810-52660829 Msa0606380:CDS 30.0%
!! ACATGTTTTTGCAAAATGTG+AGG + chr4_2:52660874-52660893 None:intergenic 30.0%
ATTTAACTGAGTAAGCTTTG+AGG + chr4_2:52661019-52661038 None:intergenic 30.0%
TGAATACAATCTTTCCATTC+TGG + chr4_2:52661128-52661147 None:intergenic 30.0%
AGAATGGAAAGATTGTATTC+AGG - chr4_2:52661127-52661146 Msa0606380:intron 30.0%
GAATGGAAAGATTGTATTCA+GGG - chr4_2:52661128-52661147 Msa0606380:intron 30.0%
!! AACCAAACTAGTTCTAAGTA+AGG + chr4_2:52661268-52661287 None:intergenic 30.0%
! TTCTTTGTTTGCTAATGCTT+AGG - chr4_2:52661287-52661306 Msa0606380:intron 30.0%
CAGATGTTGAATAAATGCTT+TGG - chr4_2:52661676-52661695 Msa0606380:intron 30.0%
!! ATTTTTCAGCAAAGCAAACT+TGG + chr4_2:52661939-52661958 None:intergenic 30.0%
ATGTCTTTCCCAAAATATAG+AGG + chr4_2:52662132-52662151 None:intergenic 30.0%
TAGTGAAATGATAGACTGAT+TGG + chr4_2:52662275-52662294 None:intergenic 30.0%
CATTTCACTATGTGCAATTA+TGG - chr4_2:52662285-52662304 Msa0606380:intron 30.0%
TACTAACCACTTATCCATTT+AGG - chr4_2:52662458-52662477 Msa0606380:intron 30.0%
ATAAAGCCTAAATGGATAAG+TGG + chr4_2:52662467-52662486 None:intergenic 30.0%
ACTTATCCATTTAGGCTTTA+TGG - chr4_2:52662466-52662485 Msa0606380:intron 30.0%
! CTTATCCATTTAGGCTTTAT+GGG - chr4_2:52662467-52662486 Msa0606380:intron 30.0%
! TTATCCATTTAGGCTTTATG+GGG - chr4_2:52662468-52662487 Msa0606380:intron 30.0%
ACTATAATGAAACCTTTACG+AGG + chr4_2:52662672-52662691 None:intergenic 30.0%
GATGGATGTTGTATAAGTAT+TGG + chr4_2:52662706-52662725 None:intergenic 30.0%
! TTTTCTACTACAATACATCC+TGG - chr4_2:52662732-52662751 Msa0606380:intron 30.0%
CAACTCTAAATTGCAAAACA+TGG - chr4_2:52662776-52662795 Msa0606380:intron 30.0%
CTAAATTGCAAAACATGGTA+TGG - chr4_2:52662781-52662800 Msa0606380:intron 30.0%
! CTGTTTACGTCTTAATTTTG+AGG - chr4_2:52662864-52662883 Msa0606380:CDS 30.0%
!!! ATTTTGAGGTAGTCACATTT+CGG - chr4_2:52662878-52662897 Msa0606380:intron 30.0%
AATAGTTTACCTTTGTAGGA+TGG + chr4_2:52662985-52663004 None:intergenic 30.0%
AGTGAATAGTTTACCTTTGT+AGG + chr4_2:52662989-52663008 None:intergenic 30.0%
ACAGTGATATACTACCATTA+TGG - chr4_2:52663119-52663138 Msa0606380:intron 30.0%
!!! TAAACATTTTGAGACTCTTC+AGG + chr4_2:52663364-52663383 None:intergenic 30.0%
ATAAACATGATCCAAATTCC+AGG + chr4_2:52663445-52663464 None:intergenic 30.0%
TGGTTTCTTCGTGGTTAATT+TGG + chr4_2:52658914-52658933 None:intergenic 35.0%
ATTCTTGTATGGTTTCTTCG+TGG + chr4_2:52658923-52658942 None:intergenic 35.0%
GCCGAGAATTAATTAACAAG+AGG - chr4_2:52658982-52659001 Msa0606380:three_prime_UTR 35.0%
ATTGAAACTTACAGAGAGGA+GGG + chr4_2:52659135-52659154 None:intergenic 35.0%
AATTGAAACTTACAGAGAGG+AGG + chr4_2:52659136-52659155 None:intergenic 35.0%
! TTCATTTTACTAGACCAGAG+AGG - chr4_2:52659345-52659364 Msa0606380:three_prime_UTR 35.0%
TGTGTGAAAACACCTAACTT+TGG - chr4_2:52659574-52659593 Msa0606380:CDS 35.0%
GTGTGAAAACACCTAACTTT+GGG - chr4_2:52659575-52659594 Msa0606380:CDS 35.0%
! AAAACACCTAACTTTGGGTT+AGG - chr4_2:52659580-52659599 Msa0606380:CDS 35.0%
ATCAATCCTAACCCAAAGTT+AGG + chr4_2:52659589-52659608 None:intergenic 35.0%
!! TTTTATTGGCTGCAGTTTCA+TGG - chr4_2:52659984-52660003 Msa0606380:intron 35.0%
GTAGCTAATTAATCCAGCTA+CGG + chr4_2:52660018-52660037 None:intergenic 35.0%
AGCTCATTCCTCTTTATACT+TGG + chr4_2:52660085-52660104 None:intergenic 35.0%
! GTTTATCATAGAAGGTGCAT+TGG - chr4_2:52660502-52660521 Msa0606380:intron 35.0%
! TTATCATAGAAGGTGCATTG+GGG - chr4_2:52660504-52660523 Msa0606380:intron 35.0%
CGGTAAATATTTGCATCATG+TGG - chr4_2:52660612-52660631 Msa0606380:intron 35.0%
! ACTAATTTTTCCGGGTAAGA+AGG - chr4_2:52660818-52660837 Msa0606380:CDS 35.0%
ATAAGCACCATATCTGTTGT+TGG - chr4_2:52660964-52660983 Msa0606380:intron 35.0%
AAACCAACCAACAACAGATA+TGG + chr4_2:52660974-52660993 None:intergenic 35.0%
TTCAACAGGAGTTGTGAATT+TGG - chr4_2:52661151-52661170 Msa0606380:intron 35.0%
TGCCTTACTTAGAACTAGTT+TGG - chr4_2:52661263-52661282 Msa0606380:intron 35.0%
TAAGTGCACATTCCAATTGA+GGG - chr4_2:52661355-52661374 Msa0606380:CDS 35.0%
GAATAAATCAGCAGCAGAAT+AGG + chr4_2:52661493-52661512 None:intergenic 35.0%
! TGAAATTCGACCCAAAGTTT+TGG - chr4_2:52661556-52661575 Msa0606380:intron 35.0%
GTTGCACTAACCAAAACTTT+GGG + chr4_2:52661569-52661588 None:intergenic 35.0%
TGTTGCACTAACCAAAACTT+TGG + chr4_2:52661570-52661589 None:intergenic 35.0%
CTTTCTACTTAATTATGCCC+AGG - chr4_2:52661778-52661797 Msa0606380:intron 35.0%
TTTGATGAACAAAGTCCATC+AGG - chr4_2:52661820-52661839 Msa0606380:intron 35.0%
TCACAACAATTATTTCGTCG+TGG + chr4_2:52662160-52662179 None:intergenic 35.0%
ATATGCCTAATTAGAACCAG+TGG + chr4_2:52662233-52662252 None:intergenic 35.0%
!!! TTTTCAGGTTTGCAGAGAAT+GGG - chr4_2:52662340-52662359 Msa0606380:intron 35.0%
AATGGATAAGTGGTTAGTAC+TGG + chr4_2:52662457-52662476 None:intergenic 35.0%
! TCAGTTTCTTTTCCTCGTAA+AGG - chr4_2:52662657-52662676 Msa0606380:intron 35.0%
TGCAATTTAGAAAACACACC+AGG + chr4_2:52662753-52662772 None:intergenic 35.0%
CTATCAAATCCATCCTACAA+AGG - chr4_2:52662973-52662992 Msa0606380:intron 35.0%
CATTCATTTGTGCTCCATAA+TGG + chr4_2:52663136-52663155 None:intergenic 35.0%
!! CTTATTTTCATAAGCTCTCC+AGG + chr4_2:52663295-52663314 None:intergenic 35.0%
ATCGATATGGATAGATGACA+TGG + chr4_2:52663652-52663671 None:intergenic 35.0%
GAGATTAACAGTGCATTTCA+TGG + chr4_2:52663690-52663709 None:intergenic 35.0%
TATTCTTCTGCCATTGAGTT+TGG - chr4_2:52664021-52664040 Msa0606380:intron 35.0%
CGTATCTTACTATGCCTACA+AGG - chr4_2:52659297-52659316 Msa0606380:three_prime_UTR 40.0%
AAATTTCACCTCAGTGTGTC+TGG + chr4_2:52659723-52659742 None:intergenic 40.0%
CTAATTAATCCAGCTACGGA+TGG + chr4_2:52660014-52660033 None:intergenic 40.0%
ATATCTGTAACTGGAGCAAC+AGG - chr4_2:52660318-52660337 Msa0606380:intron 40.0%
!! ACTGGAGCAACAGGTTTTAT+AGG - chr4_2:52660327-52660346 Msa0606380:intron 40.0%
!! GAGAGCATTGGGAAAATGTT+AGG + chr4_2:52660465-52660484 None:intergenic 40.0%
AGGCTCTTGAGTTAAAAGAC+CGG - chr4_2:52660592-52660611 Msa0606380:intron 40.0%
! CTTTAGATTTAGAGCGTGTC+AGG + chr4_2:52660794-52660813 None:intergenic 40.0%
TTTCCAGTGAAAGACTTTCC+AGG - chr4_2:52661083-52661102 Msa0606380:intron 40.0%
GATTGTATTCAGGGTTCAAC+AGG - chr4_2:52661137-52661156 Msa0606380:intron 40.0%
GAAGACCATCTGGTACTTAT+CGG + chr4_2:52661185-52661204 None:intergenic 40.0%
AATAACCTCAGAAGACCATC+TGG + chr4_2:52661195-52661214 None:intergenic 40.0%
! ACTCCCACTATTTTCCATGT+TGG - chr4_2:52661229-52661248 Msa0606380:intron 40.0%
AGAAAGAAATCAAGCAGAGC+AGG - chr4_2:52661313-52661332 Msa0606380:intron 40.0%
GAAAGAAATCAAGCAGAGCA+GGG - chr4_2:52661314-52661333 Msa0606380:intron 40.0%
!! GGAATGTGCACTTACTTTTG+AGG + chr4_2:52661349-52661368 None:intergenic 40.0%
GTAAGTGCACATTCCAATTG+AGG - chr4_2:52661354-52661373 Msa0606380:CDS 40.0%
ACTTTGGGTCGAATTTCATC+TGG + chr4_2:52661554-52661573 None:intergenic 40.0%
! GCAACAGCTGTTGGTTATTA+TGG - chr4_2:52661584-52661603 Msa0606380:CDS 40.0%
AACCAGTAGAGAACCAGTTT+GGG + chr4_2:52661622-52661641 None:intergenic 40.0%
ATCAAAGACTTGTGTCTCAC+TGG + chr4_2:52661806-52661825 None:intergenic 40.0%
TGAACAAAGTCCATCAGGAA+AGG - chr4_2:52661825-52661844 Msa0606380:intron 40.0%
TCCATCAGGAAAGGATTATC+TGG - chr4_2:52661834-52661853 Msa0606380:CDS 40.0%
ATGTTGAACCTCCTAACAGA+TGG - chr4_2:52662034-52662053 Msa0606380:CDS 40.0%
CTATGATTCCATCTGTTAGG+AGG + chr4_2:52662045-52662064 None:intergenic 40.0%
CTCCTAACAGATGGAATCAT+AGG - chr4_2:52662043-52662062 Msa0606380:CDS 40.0%
AGCCTATGATTCCATCTGTT+AGG + chr4_2:52662048-52662067 None:intergenic 40.0%
AGATGGAATCATAGGCTATG+AGG - chr4_2:52662051-52662070 Msa0606380:CDS 40.0%
! TAATTAGAACCAGTGGACTC+TGG + chr4_2:52662226-52662245 None:intergenic 40.0%
!! AGAGTCCACTGGTTCTAATT+AGG - chr4_2:52662225-52662244 Msa0606380:intron 40.0%
! CTGAATCTTCCCATCTTTTC+AGG - chr4_2:52662325-52662344 Msa0606380:intron 40.0%
CTCTGCAAACCTGAAAAGAT+GGG + chr4_2:52662337-52662356 None:intergenic 40.0%
TCTCTGCAAACCTGAAAAGA+TGG + chr4_2:52662338-52662357 None:intergenic 40.0%
!!! CTTTTCAGGTTTGCAGAGAA+TGG - chr4_2:52662339-52662358 Msa0606380:intron 40.0%
TTGCAGAGAATGGGAATCAA+CGG - chr4_2:52662349-52662368 Msa0606380:intron 40.0%
!! GGTGTTGTTCTTGGTAAAGA+TGG - chr4_2:52662416-52662435 Msa0606380:intron 40.0%
GTTGTTCTTGGTAAAGATGG+TGG - chr4_2:52662419-52662438 Msa0606380:intron 40.0%
AACACCCCATAAAGCCTAAA+TGG + chr4_2:52662475-52662494 None:intergenic 40.0%
!!! AGGTATCATTTTAGCTGCAG+AGG + chr4_2:52662581-52662600 None:intergenic 40.0%
! TTTTTCCATACAGGTTCTCC+TGG - chr4_2:52662911-52662930 Msa0606380:intron 40.0%
AATGTCATCCAGATGAATCC+AGG + chr4_2:52662932-52662951 None:intergenic 40.0%
CACTTCCATATCTCGAAAAC+AGG - chr4_2:52663005-52663024 Msa0606380:intron 40.0%
!! ACAGTCCTGTTTTCGAGATA+TGG + chr4_2:52663013-52663032 None:intergenic 40.0%
TATCACTGTAGTGTAAAGCG+CGG + chr4_2:52663108-52663127 None:intergenic 40.0%
TGATGAGTTTAGGCCATGTT+TGG - chr4_2:52663159-52663178 Msa0606380:intron 40.0%
ATTAACTGGTGCCTGGAATT+TGG - chr4_2:52663431-52663450 Msa0606380:intron 40.0%
! GAACAGCTGGGAAATGTTTT+GGG - chr4_2:52663538-52663557 Msa0606380:intron 40.0%
!!! ATCTCTCTGCAGGTTTTAGA+AGG - chr4_2:52663705-52663724 Msa0606380:intron 40.0%
!!! GGTTTTAGAAGGACAAAGAG+TGG - chr4_2:52663716-52663735 Msa0606380:intron 40.0%
ATGTCAGTGGCATTCATCAA+CGG - chr4_2:52663890-52663909 Msa0606380:intron 40.0%
ACAAAAGTGGCCAAACTCAA+TGG + chr4_2:52664034-52664053 None:intergenic 40.0%
AAACTTGGCACAAGAATGAC+AGG + chr4_2:52664060-52664079 None:intergenic 40.0%
GACTGAGGTAGATGAAGAGA+AGG + chr4_2:52659113-52659132 None:intergenic 45.0%
TTGCACCACATTGCTCACTT+AGG - chr4_2:52659176-52659195 Msa0606380:three_prime_UTR 45.0%
CTTGTCCTAAGTGAGCAATG+TGG + chr4_2:52659184-52659203 None:intergenic 45.0%
CACATTGCTCACTTAGGACA+AGG - chr4_2:52659182-52659201 Msa0606380:three_prime_UTR 45.0%
ACAACTATGAACACCGACAC+TGG + chr4_2:52659276-52659295 None:intergenic 45.0%
TTTACTAGACCAGAGAGGCT+AGG - chr4_2:52659350-52659369 Msa0606380:exon 45.0%
!! GTTTGGTGTGACACTGATCA+AGG - chr4_2:52659382-52659401 Msa0606380:CDS 45.0%
ACTCGTTATCTTTGCCTCCT+TGG - chr4_2:52659511-52659530 Msa0606380:intron 45.0%
CTCGTTATCTTTGCCTCCTT+GGG - chr4_2:52659512-52659531 Msa0606380:intron 45.0%
TCGTTATCTTTGCCTCCTTG+GGG - chr4_2:52659513-52659532 Msa0606380:intron 45.0%
ACTCAGAATGATTCTCCCCA+AGG + chr4_2:52659531-52659550 None:intergenic 45.0%
TTGGGGAGAATCATTCTGAG+TGG - chr4_2:52659530-52659549 Msa0606380:intron 45.0%
TGGGGAGAATCATTCTGAGT+GGG - chr4_2:52659531-52659550 Msa0606380:intron 45.0%
CAATGATTGATCACGGAGTC+CGG - chr4_2:52659680-52659699 Msa0606380:CDS 45.0%
! AAATTTTGCCTCAGCGTGTC+TGG - chr4_2:52660156-52660175 Msa0606380:intron 45.0%
! CTAGTAAGTACTGCCAGAGA+CGG + chr4_2:52660391-52660410 None:intergenic 45.0%
!! ACATAAGAGGCACTATGACC+AGG + chr4_2:52660544-52660563 None:intergenic 45.0%
GCACCATATCTGTTGTTGGT+TGG - chr4_2:52660968-52660987 Msa0606380:intron 45.0%
ACTCCTGGAAAGTCTTTCAC+TGG + chr4_2:52661089-52661108 None:intergenic 45.0%
TTTCCAGGAGTCAAGATTGC+AGG - chr4_2:52661098-52661117 Msa0606380:intron 45.0%
TTCCAGGAGTCAAGATTGCA+GGG - chr4_2:52661099-52661118 Msa0606380:intron 45.0%
ACAGGAGTTGTGAATTTGGC+CGG - chr4_2:52661155-52661174 Msa0606380:intron 45.0%
TCTGGTACTTATCGGCAATC+CGG + chr4_2:52661177-52661196 None:intergenic 45.0%
GATTGCCGATAAGTACCAGA+TGG - chr4_2:52661177-52661196 Msa0606380:intron 45.0%
AAGTACCAGATGGTCTTCTG+AGG - chr4_2:52661187-52661206 Msa0606380:intron 45.0%
CCGCCAACATGGAAAATAGT+GGG + chr4_2:52661235-52661254 None:intergenic 45.0%
! CCCACTATTTTCCATGTTGG+CGG - chr4_2:52661232-52661251 Msa0606380:intron 45.0%
ACCGCCAACATGGAAAATAG+TGG + chr4_2:52661236-52661255 None:intergenic 45.0%
GCAAAAGATAACCGCCAACA+TGG + chr4_2:52661246-52661265 None:intergenic 45.0%
TTGGTTAGTGCAACAGCTGT+TGG - chr4_2:52661575-52661594 Msa0606380:intron 45.0%
GTATGTCTGTATGCCCAAAC+TGG - chr4_2:52661606-52661625 Msa0606380:CDS 45.0%
CAACCAGTAGAGAACCAGTT+TGG + chr4_2:52661623-52661642 None:intergenic 45.0%
GCCAGATAATCCTTTCCTGA+TGG + chr4_2:52661838-52661857 None:intergenic 45.0%
AGGAAAGGATTATCTGGCTG+AGG - chr4_2:52661840-52661859 Msa0606380:CDS 45.0%
GGATTATCTGGCTGAGGTAA+AGG - chr4_2:52661846-52661865 Msa0606380:CDS 45.0%
GGCTAATGGAGATGTTAGAG+TGG - chr4_2:52662379-52662398 Msa0606380:CDS 45.0%
!! AGAGTGGCTCTAATTCGCAT+CGG - chr4_2:52662395-52662414 Msa0606380:CDS 45.0%
!! ATTCGCATCGGTGTTGTTCT+TGG - chr4_2:52662407-52662426 Msa0606380:intron 45.0%
!! GGTAAAGATGGTGGAGCATT+AGG - chr4_2:52662428-52662447 Msa0606380:intron 45.0%
CCAGCAAACATCATGAAGAG+AGG + chr4_2:52662601-52662620 None:intergenic 45.0%
CCTCTCTTCATGATGTTTGC+TGG - chr4_2:52662598-52662617 Msa0606380:intron 45.0%
! CTCTTCATGATGTTTGCTGG+TGG - chr4_2:52662601-52662620 Msa0606380:intron 45.0%
!! CATTGATTTCCAGAGCCTAG+AGG + chr4_2:52662628-52662647 None:intergenic 45.0%
!! CTCTAGGCTCTGGAAATCAA+TGG - chr4_2:52662626-52662645 Msa0606380:intron 45.0%
TGAATCCAGGAGAACCTGTA+TGG + chr4_2:52662919-52662938 None:intergenic 45.0%
ATCACTGTAGTGTAAAGCGC+GGG + chr4_2:52663107-52663126 None:intergenic 45.0%
GCTGTCTTCAAAAGCTATCC+TGG - chr4_2:52663274-52663293 Msa0606380:intron 45.0%
AGTCTTGATTAACTGGTGCC+TGG - chr4_2:52663424-52663443 Msa0606380:intron 45.0%
! CGAACAGCTGGGAAATGTTT+TGG - chr4_2:52663537-52663556 Msa0606380:intron 45.0%
TTTGCACTCAAGGCTGTTCT+TGG - chr4_2:52663589-52663608 Msa0606380:intron 45.0%
CTGTGGTAAGGAATCATCTC+TGG - chr4_2:52663623-52663642 Msa0606380:intron 45.0%
TGCACTGTTAATCTCTCTGC+AGG - chr4_2:52663695-52663714 Msa0606380:intron 45.0%
GAATGAGAAACCCAGCTTCT+TGG + chr4_2:52663754-52663773 None:intergenic 45.0%
!! ATGTTGGAAGGGTTGATGCA+AGG + chr4_2:52663872-52663891 None:intergenic 45.0%
ATGCCACTGACATGTTGGAA+GGG + chr4_2:52663883-52663902 None:intergenic 45.0%
AATGCCACTGACATGTTGGA+AGG + chr4_2:52663884-52663903 None:intergenic 45.0%
GATGAATGCCACTGACATGT+TGG + chr4_2:52663888-52663907 None:intergenic 45.0%
GAATGACAGGTGGACAAAAG+TGG + chr4_2:52664047-52664066 None:intergenic 45.0%
GTAGAGCTACAGCTCTCACT+TGG - chr4_2:52659072-52659091 Msa0606380:three_prime_UTR 50.0%
GTTAGTGTCGTGTCCAGTGT+CGG - chr4_2:52659260-52659279 Msa0606380:three_prime_UTR 50.0%
AGGCTAGGAGGTTCAGAGTT+TGG - chr4_2:52659365-52659384 Msa0606380:exon 50.0%
TGACACTGATCAAGGCTCCA+AGG - chr4_2:52659390-52659409 Msa0606380:CDS 50.0%
CAGAATGATTCTCCCCAAGG+AGG + chr4_2:52659528-52659547 None:intergenic 50.0%
GGTACGTGTGCACAATTGAC+CGG + chr4_2:52659702-52659721 None:intergenic 50.0%
! GAGTCGAGCTGAAAGTGCAA+CGG + chr4_2:52659891-52659910 None:intergenic 50.0%
TCATGATACCAGACACGCTG+AGG + chr4_2:52660167-52660186 None:intergenic 50.0%
!! ATCACCGAGCGTGTTTTTGC+AGG - chr4_2:52660281-52660300 Msa0606380:intron 50.0%
!! TCACCGAGCGTGTTTTTGCA+GGG - chr4_2:52660282-52660301 Msa0606380:intron 50.0%
TCTCCCTGCAAAAACACGCT+CGG + chr4_2:52660288-52660307 None:intergenic 50.0%
TTGGTGCAAAAGCTGCAAGC+AGG - chr4_2:52660357-52660376 Msa0606380:intron 50.0%
! TAAGTACTGCCAGAGACGGA+GGG + chr4_2:52660387-52660406 None:intergenic 50.0%
CGTCTCTGGCAGTACTTACT+AGG - chr4_2:52660389-52660408 Msa0606380:intron 50.0%
GGGGTTGTATTGTACTCTCC+TGG - chr4_2:52660523-52660542 Msa0606380:intron 50.0%
TCCAGGAGTCAAGATTGCAG+GGG - chr4_2:52661100-52661119 Msa0606380:intron 50.0%
AGATTGCAGGGGAACCAGAA+TGG - chr4_2:52661111-52661130 Msa0606380:intron 50.0%
! TGCCCAAACTGGTTCTCTAC+TGG - chr4_2:52661617-52661636 Msa0606380:CDS 50.0%
ATACAACCTCCAGAGTCCAC+TGG - chr4_2:52662214-52662233 Msa0606380:intron 50.0%
! TTAGAACCAGTGGACTCTGG+AGG + chr4_2:52662223-52662242 None:intergenic 50.0%
ATGGGAATCAACGGCGCTAA+AGG - chr4_2:52662358-52662377 Msa0606380:CDS 50.0%
TCAACGGCGCTAAAGGCTAA+TGG - chr4_2:52662365-52662384 Msa0606380:CDS 50.0%
! ATGTTTGCTGGTGGACCTCT+AGG - chr4_2:52662610-52662629 Msa0606380:intron 50.0%
CAGGTTCTCCTGGATTCATC+TGG - chr4_2:52662921-52662940 Msa0606380:intron 50.0%
TCCGAATTGTGCGAACAGCT+GGG - chr4_2:52663526-52663545 Msa0606380:intron 50.0%
TCCCAGCTGTTCGCACAATT+CGG + chr4_2:52663530-52663549 None:intergenic 50.0%
!! ATGTTTTGGGTCGTCCCTCA+TGG - chr4_2:52663551-52663570 Msa0606380:intron 50.0%
TTGAGTGCAAAGTCAGGCAC+CGG + chr4_2:52663580-52663599 None:intergenic 50.0%
ACAGCCTTGAGTGCAAAGTC+AGG + chr4_2:52663586-52663605 None:intergenic 50.0%
CTCAAGGCTGTTCTTGGAGA+AGG - chr4_2:52663595-52663614 Msa0606380:intron 50.0%
!! TCTTGGAGAAGGTGCTACTG+TGG - chr4_2:52663606-52663625 Msa0606380:intron 50.0%
!! GAGAAGGTGCTACTGTGGTA+AGG - chr4_2:52663611-52663630 Msa0606380:intron 50.0%
TCCTACTCAAGCCAAGAAGC+TGG - chr4_2:52663740-52663759 Msa0606380:intron 50.0%
CCTACTCAAGCCAAGAAGCT+GGG - chr4_2:52663741-52663760 Msa0606380:intron 50.0%
CAACCCTTCCAACATGTCAG+TGG - chr4_2:52663877-52663896 Msa0606380:intron 50.0%
CTTGGCACAAGAATGACAGG+TGG + chr4_2:52664057-52664076 None:intergenic 50.0%
CTTACAGAGAGGAGGGACTG+AGG + chr4_2:52659128-52659147 None:intergenic 55.0%
ACTAGACCAGAGAGGCTAGG+AGG - chr4_2:52659353-52659372 Msa0606380:exon 55.0%
TCTGAACCTCCTAGCCTCTC+TGG + chr4_2:52659362-52659381 None:intergenic 55.0%
CACACGTACCAGACACACTG+AGG - chr4_2:52659712-52659731 Msa0606380:intron 55.0%
! GTAAGTACTGCCAGAGACGG+AGG + chr4_2:52660388-52660407 None:intergenic 55.0%
TCCCCTGCAATCTTGACTCC+TGG + chr4_2:52661104-52661123 None:intergenic 55.0%
CTTGTGTCTCACTGGTGCCT+GGG + chr4_2:52661798-52661817 None:intergenic 55.0%
ACTTGTGTCTCACTGGTGCC+TGG + chr4_2:52661799-52661818 None:intergenic 55.0%
! CGGGCAAGTTGACAGGGAAA+TGG + chr4_2:52663088-52663107 None:intergenic 55.0%
! AAAGCGCGGGCAAGTTGACA+GGG + chr4_2:52663094-52663113 None:intergenic 55.0%
! TAAAGCGCGGGCAAGTTGAC+AGG + chr4_2:52663095-52663114 None:intergenic 55.0%
CACAATTCGGACAGTCGCAC+GGG + chr4_2:52663517-52663536 None:intergenic 55.0%
GCACAATTCGGACAGTCGCA+CGG + chr4_2:52663518-52663537 None:intergenic 55.0%
GTCCGAATTGTGCGAACAGC+TGG - chr4_2:52663525-52663544 Msa0606380:intron 55.0%
GGTGCCTGACTTTGCACTCA+AGG - chr4_2:52663579-52663598 Msa0606380:intron 55.0%
! CCCAGCTTCTTGGCTTGAGT+AGG + chr4_2:52663744-52663763 None:intergenic 55.0%
! CATGGAGTGCCATCCGTAGC+TGG - chr4_2:52660002-52660021 Msa0606380:intron 60.0%
TCGGACAGTCGCACGGGATT+TGG + chr4_2:52663511-52663530 None:intergenic 60.0%
GGGTAGACGCTCGAGCGTAG+AGG + chr4_2:52659917-52659936 None:intergenic 65.0%
! GCAGGTTAGCCCTCCGTCTC+TGG - chr4_2:52660375-52660394 Msa0606380:intron 65.0%
! GCTGGTGGACCTCTAGGCTC+TGG - chr4_2:52662616-52662635 Msa0606380:intron 65.0%
!! TCAGGCACCGGCAGCCATGA+GGG + chr4_2:52663568-52663587 None:intergenic 65.0%
GGGTCGTCCCTCATGGCTGC+CGG - chr4_2:52663558-52663577 Msa0606380:intron 70.0%
!! GTCAGGCACCGGCAGCCATG+AGG + chr4_2:52663569-52663588 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52658888 52664299 52658888 ID=Msa0606380;Name=Msa0606380
chr4_2 mRNA 52658888 52664299 52658888 ID=Msa0606380-mRNA-1;Parent=Msa0606380;Name=Msa0606380-mRNA-1;_AED=0.14;_eAED=0.14;_QI=174|1|1|1|1|1|13|481|350
chr4_2 exon 52658888 52659470 52658888 ID=Msa0606380-mRNA-1:exon:12951;Parent=Msa0606380-mRNA-1
chr4_2 exon 52659560 52659699 52659560 ID=Msa0606380-mRNA-1:exon:12950;Parent=Msa0606380-mRNA-1
chr4_2 exon 52660193 52660263 52660193 ID=Msa0606380-mRNA-1:exon:12949;Parent=Msa0606380-mRNA-1
chr4_2 exon 52660540 52660600 52660540 ID=Msa0606380-mRNA-1:exon:12948;Parent=Msa0606380-mRNA-1
chr4_2 exon 52660738 52660840 52660738 ID=Msa0606380-mRNA-1:exon:12947;Parent=Msa0606380-mRNA-1
chr4_2 exon 52661326 52661387 52661326 ID=Msa0606380-mRNA-1:exon:12946;Parent=Msa0606380-mRNA-1
chr4_2 exon 52661582 52661660 52661582 ID=Msa0606380-mRNA-1:exon:12945;Parent=Msa0606380-mRNA-1
chr4_2 exon 52661834 52661878 52661834 ID=Msa0606380-mRNA-1:exon:12944;Parent=Msa0606380-mRNA-1
chr4_2 exon 52661979 52662097 52661979 ID=Msa0606380-mRNA-1:exon:12943;Parent=Msa0606380-mRNA-1
chr4_2 exon 52662356 52662415 52662356 ID=Msa0606380-mRNA-1:exon:12942;Parent=Msa0606380-mRNA-1
chr4_2 exon 52662809 52662884 52662809 ID=Msa0606380-mRNA-1:exon:12941;Parent=Msa0606380-mRNA-1
chr4_2 exon 52663776 52663829 52663776 ID=Msa0606380-mRNA-1:exon:12940;Parent=Msa0606380-mRNA-1
chr4_2 exon 52664045 52664299 52664045 ID=Msa0606380-mRNA-1:exon:12939;Parent=Msa0606380-mRNA-1
chr4_2 five_prime_UTR 52664126 52664299 52664126 ID=Msa0606380-mRNA-1:five_prime_utr;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52664045 52664125 52664045 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52663776 52663829 52663776 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52662809 52662884 52662809 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52662356 52662415 52662356 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52661979 52662097 52661979 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52661834 52661878 52661834 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52661582 52661660 52661582 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52661326 52661387 52661326 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52660738 52660840 52660738 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52660540 52660600 52660540 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52660193 52660263 52660193 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52659560 52659699 52659560 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 CDS 52659369 52659470 52659369 ID=Msa0606380-mRNA-1:cds;Parent=Msa0606380-mRNA-1
chr4_2 three_prime_UTR 52658888 52659368 52658888 ID=Msa0606380-mRNA-1:three_prime_utr;Parent=Msa0606380-mRNA-1
Gene Sequence

>Msa0606380

ATGGAAATCAGTAGAGCTACAGCTCTCACTTGGTCTCACAACGTCTCTCCTTCTCTTCATCTACCTCAGTCCCTCCTCTCTACCAGAGAGGCTAGGAGGTTCAGAGTTTGGTGTGACACTGATCAAGGCTCCAAGGGAGATCAAATGATCATATCTGTAACTGGAGCAACAGGTTTTATAGGTAAAAGATTGGTGCAAAAGCTGCAAGCAGAAAATCACAGAGTTCATGTCCTGACACGCTCTAAATCTAAAGCAGAACTAATTTTTCCGGTGAAAGACTTTCCAGGAGTCAAGATTGCAGGGGAACCAGAATGGAAAGATTGTATTCAGGGTTCAACAGGAGTTGTGAATTTGGCCGGATTGCCGATAAGTACCAGATGGTCTTCTGAGGTAAAGAAAGAAATCAAGCAGAGCAGGGTTAGAGTGACCTCAAAAGTTGTAGATTTGATAAAAAGGGCACCAGATGAAATTCGACCCAAAGTTTTGGTTAGTGCAACAGCTGTTGGTTATTATGGCACCAGTGAGACACAAGTCTTTGATGAACAAAGTCCATCAGGAAAGGATTATCTGGCTGAGGTTTGCAGAGAATGGGAATCAACGGCGCTAAAGGCTAATGGAGATGTTAGAGTGGCTCTAATTCGCATCGGTGTTGTTCTTGGTAAAGATGGTGGAGCATTAGCTAAAATGATACCTCTCTTCATGATGTTTGCTGGTGGACCTCTAGGCTCTGGAAATCAATGGTTCTCCTGGATTCATCTGGATGACATTGTCAATTTAATATATGAAGCACTATCAAATCCATCCTACAAAGGTGTTATCAATGGAACTGCACCAAATCCCGTGCGACTGTCCGAATTGTGCGAACAGCTGGGAAATGTTTTGGGTCGTCCCTCATGGCTGCCGGTGCCTGACTTTGCACTCAAGGCTGTTCTTGGAGAAGGTGCTACTGTGGTTTTAGAAGGACAAAGAGTGGTTCCTACTCAAGCCAAGAAGCTGGGTTTCTCATTCAAATATTCATATGTGAAGGATGCCCTTAAAGCAATTATTTCTTGA

Protein sequence

>Msa0606380

MEISRATALTWSHNVSPSLHLPQSLLSTREARRFRVWCDTDQGSKGDQMIISVTGATGFIGKRLVQKLQAENHRVHVLTRSKSKAELIFPVKDFPGVKIAGEPEWKDCIQGSTGVVNLAGLPISTRWSSEVKKEIKQSRVRVTSKVVDLIKRAPDEIRPKVLVSATAVGYYGTSETQVFDEQSPSGKDYLAEVCREWESTALKANGDVRVALIRIGVVLGKDGGALAKMIPLFMMFAGGPLGSGNQWFSWIHLDDIVNLIYEALSNPSYKGVINGTAPNPVRLSELCEQLGNVLGRPSWLPVPDFALKAVLGEGATVVLEGQRVVPTQAKKLGFSFKYSYVKDALKAIIS*