AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098960 MtrunA17_Chr1g0151461 95.410 305 11 2 1 302 1 305 0.0 540
Msa0098960 MtrunA17_Chr4g0071301 45.872 109 38 5 105 213 134 221 2.04e-17 81.3
Msa0098960 MtrunA17_Chr2g0299081 37.850 214 80 8 105 300 115 293 3.70e-16 77.4
Msa0098960 MtrunA17_Chr4g0068031 62.500 48 18 0 181 228 27 74 6.33e-16 73.6
Msa0098960 MtrunA17_Chr7g0271861 69.444 36 11 0 184 219 22 57 7.22e-13 64.7
Msa0098960 MtrunA17_Chr5g0404131 57.692 52 19 1 172 220 177 228 3.17e-12 65.9
Msa0098960 MtrunA17_Chr8g0373231 63.158 38 14 0 183 220 124 161 7.70e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098960 AT5G56860.1 41.985 131 49 6 105 217 142 263 7.56e-19 86.3
Msa0098960 AT5G49300.1 66.667 45 15 0 180 224 32 76 5.92e-17 76.6
Msa0098960 AT4G26150.1 43.220 118 26 4 105 215 147 230 5.28e-16 77.8
Msa0098960 AT5G26930.1 66.667 42 14 0 180 221 22 63 9.14e-16 72.8
Msa0098960 AT3G06740.1 66.667 42 14 0 181 222 38 79 1.69e-14 70.1
Msa0098960 AT4G16141.1 68.293 41 13 0 181 221 34 74 3.27e-14 70.5
Msa0098960 AT3G16870.1 57.143 56 20 1 181 236 39 90 4.73e-14 69.7
Msa0098960 AT4G36620.1 58.333 48 20 0 180 227 71 118 2.65e-12 65.5
Msa0098960 AT2G18380.1 64.286 42 14 1 184 224 92 133 5.06e-12 64.3
Msa0098960 AT5G25830.1 42.647 68 38 1 152 219 188 254 2.31e-11 63.9
Msa0098960 AT3G50870.1 58.696 46 18 1 183 227 151 196 4.62e-11 62.8

Find 72 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGTTTGGTCTCATTAT+TGG 0.223553 1_3:+4981357 None:intergenic
CAGGAGAAATATTGAAGAAT+TGG 0.252897 1_3:+4982362 None:intergenic
CCTACCTTCTTTAACTTACT+TGG 0.262128 1_3:-4982325 Msa0098960:CDS
CAATATTTCTCCTGTTAATC+AGG 0.271245 1_3:-4982353 Msa0098960:CDS
TGACCTTGTAGTAAGGAATT+AGG 0.293931 1_3:+4982388 None:intergenic
GGACTAGTACCATAATTAAT+AGG 0.299944 1_3:+4981282 None:intergenic
ATGATGAAACCTATTAATTA+TGG 0.328213 1_3:-4981291 Msa0098960:CDS
TTGTTACCGCTGTTACTACT+AGG 0.336848 1_3:+4981225 None:intergenic
TGTTACTACTAGGGCTTGTT+TGG 0.337618 1_3:+4981235 None:intergenic
CACTCCTCCATAGTGGGGTA+TGG 0.338618 1_3:+4981169 None:intergenic
GTCCAAGAAATCAAAATATA+AGG 0.340331 1_3:-4981263 Msa0098960:CDS
TTTGCAATGCTTGTGGAATC+AGG 0.357272 1_3:-4980547 Msa0098960:CDS
TTTAACTTACTTGGAGACTT+TGG 0.370727 1_3:-4982316 Msa0098960:CDS
TCATCATAATCATAATCTAA+TGG 0.373491 1_3:+4980335 None:intergenic
TAATTAATAGGTTTCATCAT+TGG 0.391140 1_3:+4981294 None:intergenic
GTAGGAGTGTCCTGATTAAC+AGG 0.392974 1_3:+4982343 None:intergenic
CACAAATTTATCATCATCCT+TGG 0.395360 1_3:-4981490 Msa0098960:CDS
AGCAACGGCGGCACGACTTC+TGG 0.401059 1_3:-4980309 Msa0098960:CDS
CCTGGTGGATTCAGAGAAAC+AGG 0.414838 1_3:+4982412 None:intergenic
GTGGCTGCAATATTGTTGTT+TGG 0.421269 1_3:+4981345 None:intergenic
GGCTGAAGCTGCCAATGGTT+TGG 0.422143 1_3:-4980501 Msa0098960:CDS
TTCATCAAGTGAGTCAGTTA+TGG 0.431248 1_3:-4981535 Msa0098960:CDS
TTGATGAATTATAGAGTTGT+TGG 0.441916 1_3:+4981550 None:intergenic
CGAATTACCTTTGGACCCAT+AGG 0.444966 1_3:+4981144 None:intergenic
ACTATGGAGGAGTGGCCCTA+TGG 0.450797 1_3:-4981160 Msa0098960:CDS
TGAGTCACGGGTCTGAGAAA+TGG 0.451328 1_3:-4981443 Msa0098960:CDS
CTTCTGGTGGATATATCTTC+TGG 0.451597 1_3:-4980293 Msa0098960:CDS
ACAGCGGTAACAACACCGTT+AGG 0.456940 1_3:-4981215 Msa0098960:CDS
CTATGGAGGAGTGGCCCTAT+GGG 0.464867 1_3:-4981159 Msa0098960:CDS
TTTATCATCATCCTTGGAGC+TGG 0.479939 1_3:-4981484 Msa0098960:CDS
CTTGATAGCTTTGTCAGTAG+TGG 0.482210 1_3:+4981326 None:intergenic
AGAAAATCATGATCATCATC+AGG 0.482702 1_3:-4982293 Msa0098960:intron
ACTCCTCCATAGTGGGGTAT+GGG 0.482841 1_3:+4981170 None:intergenic
GTACATCCCATACCCCACTA+TGG 0.488777 1_3:-4981176 Msa0098960:CDS
TTCTTAGTCTTGAATTGTGT+AGG 0.495944 1_3:+4980440 None:intergenic
GCTGCTATCTTCCAGCTCCA+AGG 0.513483 1_3:+4981473 None:intergenic
TGGTCTCATTATTGGAGTTG+TGG 0.515285 1_3:+4981365 None:intergenic
AAGCTGGCATTTCATCATGA+TGG 0.517666 1_3:-4981591 Msa0098960:CDS
TCAGGCAGAGAAAGGCAAGA+AGG 0.520139 1_3:-4980529 Msa0098960:CDS
ACAACTTCAACTACTTCTGC+TGG 0.524955 1_3:-4980395 Msa0098960:CDS
CAGGCAGAGAAAGGCAAGAA+GGG 0.526577 1_3:-4980528 Msa0098960:CDS
GAATTACCTTTGGACCCATA+GGG 0.528192 1_3:+4981145 None:intergenic
GTCTCCAAGTAAGTTAAAGA+AGG 0.532121 1_3:+4982321 None:intergenic
AGGGGATGTAGCCAAACCAT+TGG 0.539225 1_3:+4980490 None:intergenic
CCTGTTTCTCTGAATCCACC+AGG 0.540643 1_3:-4982412 Msa0098960:CDS
CAGTCACTTTGCAATGCTTG+TGG 0.543553 1_3:-4980554 Msa0098960:CDS
CAGCGGTAACAACACCGTTA+GGG 0.546032 1_3:-4981214 Msa0098960:CDS
ACCATTGGCAGCTTCAGCCA+TGG 0.551217 1_3:+4980505 None:intergenic
TTGTGGAATCAGGCAGAGAA+AGG 0.551715 1_3:-4980537 Msa0098960:CDS
TAGGGCCACTCCTCCATAGT+GGG 0.558056 1_3:+4981163 None:intergenic
ATTACTATAGGATCATAAGC+TGG 0.563335 1_3:-4981607 Msa0098960:intron
TGTTACCGCTGTTACTACTA+GGG 0.563428 1_3:+4981226 None:intergenic
ATAGGGCCACTCCTCCATAG+TGG 0.566452 1_3:+4981162 None:intergenic
ATTCAGAGAAACAGGAGTCA+TGG 0.574562 1_3:+4982420 None:intergenic
AGAAGTAGTTGAAGTTGTAG+AGG 0.579757 1_3:+4980400 None:intergenic
CCAAGTAAGTTAAAGAAGGT+AGG 0.580600 1_3:+4982325 None:intergenic
GAGAAAGGCAAGAAGGGCCA+TGG 0.585866 1_3:-4980522 Msa0098960:CDS
GAGTGGCCCTATGGGTCCAA+AGG 0.590272 1_3:-4981151 Msa0098960:intron
GGTCCTAATTCCTTACTACA+AGG 0.608365 1_3:-4982391 Msa0098960:CDS
TGATTATGATGAAGCAGCAA+CGG 0.614524 1_3:-4980324 Msa0098960:CDS
GCCATGGCTGAAGCTGCCAA+TGG 0.619219 1_3:-4980506 Msa0098960:CDS
AATGGATGTCTTCAAAGATG+AGG 0.632702 1_3:-4981425 Msa0098960:CDS
AACGGCGGCACGACTTCTGG+TGG 0.640817 1_3:-4980306 Msa0098960:CDS
ACAATCAGAACAAACCCTAA+CGG 0.645452 1_3:+4981200 None:intergenic
AGTAAGGAATTAGGACCTGG+TGG 0.650702 1_3:+4982397 None:intergenic
ACAATTCAAGACTAAGAACA+AGG 0.668290 1_3:-4980435 Msa0098960:CDS
CATACCCCACTATGGAGGAG+TGG 0.671274 1_3:-4981168 Msa0098960:CDS
TGTAGTAAGGAATTAGGACC+TGG 0.677396 1_3:+4982394 None:intergenic
CATCCCATACCCCACTATGG+AGG 0.682705 1_3:-4981173 Msa0098960:CDS
TTATGATGAAGCAGCAACGG+CGG 0.694941 1_3:-4980321 Msa0098960:CDS
AGGGCCACTCCTCCATAGTG+GGG 0.711722 1_3:+4981164 None:intergenic
ACAAGCCCTAGTAGTAACAG+CGG 0.724459 1_3:-4981231 Msa0098960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATATATTATTAAAACA+TGG + chr1_3:4980755-4980774 None:intergenic 10.0%
!! CTTTATATAATGATATAATT+TGG - chr1_3:4980804-4980823 Msa0098960:intron 10.0%
!!! ATTAATATATTTTTTTTGTG+GGG + chr1_3:4981703-4981722 None:intergenic 10.0%
!! ATTAATATTTATTGTTCATA+AGG - chr1_3:4981717-4981736 Msa0098960:intron 10.0%
!! TTAATATTTATTGTTCATAA+GGG - chr1_3:4981718-4981737 Msa0098960:intron 10.0%
!! TGATAAAATATTTGTATTAA+AGG + chr1_3:4981804-4981823 None:intergenic 10.0%
!! TAATTAAAAAGATAAAATAG+AGG + chr1_3:4981901-4981920 None:intergenic 10.0%
!! AATCAAATTAAGTTTAATTA+TGG + chr1_3:4982072-4982091 None:intergenic 10.0%
!! ATCTATATATTATTAAAACA+TGG + chr1_3:4980755-4980774 None:intergenic 10.0%
!! CTTTATATAATGATATAATT+TGG - chr1_3:4980804-4980823 Msa0098960:intron 10.0%
!!! ATTAATATATTTTTTTTGTG+GGG + chr1_3:4981703-4981722 None:intergenic 10.0%
!! ATTAATATTTATTGTTCATA+AGG - chr1_3:4981717-4981736 Msa0098960:intron 10.0%
!! TTAATATTTATTGTTCATAA+GGG - chr1_3:4981718-4981737 Msa0098960:intron 10.0%
!! TGATAAAATATTTGTATTAA+AGG + chr1_3:4981804-4981823 None:intergenic 10.0%
!! TAATTAAAAAGATAAAATAG+AGG + chr1_3:4981901-4981920 None:intergenic 10.0%
!! AATCAAATTAAGTTTAATTA+TGG + chr1_3:4982072-4982091 None:intergenic 10.0%
!!! ATCTTTAAAAAAAACAAAAG+GGG + chr1_3:4980631-4980650 None:intergenic 15.0%
!!! CATCTTTAAAAAAAACAAAA+GGG + chr1_3:4980632-4980651 None:intergenic 15.0%
!!! ACATCTTTAAAAAAAACAAA+AGG + chr1_3:4980633-4980652 None:intergenic 15.0%
!! AAAAAATTATAGAAGAGAAA+AGG + chr1_3:4980875-4980894 None:intergenic 15.0%
!! AATAATAACATATACATCAA+AGG + chr1_3:4980986-4981005 None:intergenic 15.0%
!!! GATATTAATAATTTTTGAGA+TGG + chr1_3:4981678-4981697 None:intergenic 15.0%
!!! TGTTTTTGTAAGAATTTTTA+TGG + chr1_3:4981770-4981789 None:intergenic 15.0%
!!! ATCTTTAAAAAAAACAAAAG+GGG + chr1_3:4980631-4980650 None:intergenic 15.0%
!!! CATCTTTAAAAAAAACAAAA+GGG + chr1_3:4980632-4980651 None:intergenic 15.0%
!!! ACATCTTTAAAAAAAACAAA+AGG + chr1_3:4980633-4980652 None:intergenic 15.0%
!! AAAAAATTATAGAAGAGAAA+AGG + chr1_3:4980875-4980894 None:intergenic 15.0%
!! AATAATAACATATACATCAA+AGG + chr1_3:4980986-4981005 None:intergenic 15.0%
!!! GATATTAATAATTTTTGAGA+TGG + chr1_3:4981678-4981697 None:intergenic 15.0%
!!! TGTTTTTGTAAGAATTTTTA+TGG + chr1_3:4981770-4981789 None:intergenic 15.0%
!! AAAGAGAAGTAAAAAACAAA+GGG + chr1_3:4980447-4980466 None:intergenic 20.0%
!! AAAAGAGAAGTAAAAAACAA+AGG + chr1_3:4980448-4980467 None:intergenic 20.0%
!! TAGATTAATAATCAGATCAT+AGG + chr1_3:4980830-4980849 None:intergenic 20.0%
!! TAATTAATAGGTTTCATCAT+TGG + chr1_3:4981407-4981426 None:intergenic 20.0%
!! ATGATGAAACCTATTAATTA+TGG - chr1_3:4981407-4981426 Msa0098960:CDS 20.0%
!!! TACCTTATATTTTGATTTCT+TGG + chr1_3:4981440-4981459 None:intergenic 20.0%
!!! CGATAAATGATAAATTTTAG+TGG + chr1_3:4981644-4981663 None:intergenic 20.0%
!! ATTTGTATTAAAGGAAGTAA+AGG + chr1_3:4981795-4981814 None:intergenic 20.0%
!! TCATCATAATCATAATCTAA+TGG + chr1_3:4982366-4982385 None:intergenic 20.0%
!! AAAGAGAAGTAAAAAACAAA+GGG + chr1_3:4980447-4980466 None:intergenic 20.0%
!! AAAAGAGAAGTAAAAAACAA+AGG + chr1_3:4980448-4980467 None:intergenic 20.0%
!! TAGATTAATAATCAGATCAT+AGG + chr1_3:4980830-4980849 None:intergenic 20.0%
!! TAATTAATAGGTTTCATCAT+TGG + chr1_3:4981407-4981426 None:intergenic 20.0%
!! ATGATGAAACCTATTAATTA+TGG - chr1_3:4981407-4981426 Msa0098960:CDS 20.0%
!!! TACCTTATATTTTGATTTCT+TGG + chr1_3:4981440-4981459 None:intergenic 20.0%
!!! CGATAAATGATAAATTTTAG+TGG + chr1_3:4981644-4981663 None:intergenic 20.0%
!! ATTTGTATTAAAGGAAGTAA+AGG + chr1_3:4981795-4981814 None:intergenic 20.0%
!! TCATCATAATCATAATCTAA+TGG + chr1_3:4982366-4982385 None:intergenic 20.0%
! TCAAAACAACACAATTACTA+TGG + chr1_3:4980685-4980704 None:intergenic 25.0%
!!! CTCTTTGATTTGATTACTAT+AGG - chr1_3:4981079-4981098 Msa0098960:intron 25.0%
! TTGATGAATTATAGAGTTGT+TGG + chr1_3:4981151-4981170 None:intergenic 25.0%
! GTCCAAGAAATCAAAATATA+AGG - chr1_3:4981435-4981454 Msa0098960:CDS 25.0%
! ATACGAAAGAATAGTGAATA+AGG + chr1_3:4981590-4981609 None:intergenic 25.0%
! ACTATTCTTTCGTATTAAAG+TGG - chr1_3:4981595-4981614 Msa0098960:CDS 25.0%
! CTATTCTTTCGTATTAAAGT+GGG - chr1_3:4981596-4981615 Msa0098960:CDS 25.0%
! TAAAAAGATAAAATAGAGGC+AGG + chr1_3:4981897-4981916 None:intergenic 25.0%
! TAGTTAACATGAAAACATGT+TGG - chr1_3:4982119-4982138 Msa0098960:intron 25.0%
!!! TCTTAAGCACTTTAGTTTTA+GGG + chr1_3:4982230-4982249 None:intergenic 25.0%
!!! ATCTTAAGCACTTTAGTTTT+AGG + chr1_3:4982231-4982250 None:intergenic 25.0%
! TCAAAACAACACAATTACTA+TGG + chr1_3:4980685-4980704 None:intergenic 25.0%
!!! CTCTTTGATTTGATTACTAT+AGG - chr1_3:4981079-4981098 Msa0098960:intron 25.0%
! TTGATGAATTATAGAGTTGT+TGG + chr1_3:4981151-4981170 None:intergenic 25.0%
! GTCCAAGAAATCAAAATATA+AGG - chr1_3:4981435-4981454 Msa0098960:CDS 25.0%
! ATACGAAAGAATAGTGAATA+AGG + chr1_3:4981590-4981609 None:intergenic 25.0%
! ACTATTCTTTCGTATTAAAG+TGG - chr1_3:4981595-4981614 Msa0098960:CDS 25.0%
! CTATTCTTTCGTATTAAAGT+GGG - chr1_3:4981596-4981615 Msa0098960:CDS 25.0%
! TAAAAAGATAAAATAGAGGC+AGG + chr1_3:4981897-4981916 None:intergenic 25.0%
! TAGTTAACATGAAAACATGT+TGG - chr1_3:4982119-4982138 Msa0098960:intron 25.0%
!!! TCTTAAGCACTTTAGTTTTA+GGG + chr1_3:4982230-4982249 None:intergenic 25.0%
!!! ATCTTAAGCACTTTAGTTTT+AGG + chr1_3:4982231-4982250 None:intergenic 25.0%
CAGGAGAAATATTGAAGAAT+TGG + chr1_3:4980339-4980358 None:intergenic 30.0%
CAATATTTCTCCTGTTAATC+AGG - chr1_3:4980345-4980364 Msa0098960:CDS 30.0%
! TTTAACTTACTTGGAGACTT+TGG - chr1_3:4980382-4980401 Msa0098960:CDS 30.0%
AGAAAATCATGATCATCATC+AGG - chr1_3:4980405-4980424 Msa0098960:CDS 30.0%
AAACAACACAATTACTATGG+TGG + chr1_3:4980682-4980701 None:intergenic 30.0%
!!! TTTTGAAACAAGAGAACGTT+TGG - chr1_3:4980699-4980718 Msa0098960:intron 30.0%
ATTACTATAGGATCATAAGC+TGG - chr1_3:4981091-4981110 Msa0098960:intron 30.0%
CACAAATTTATCATCATCCT+TGG - chr1_3:4981208-4981227 Msa0098960:CDS 30.0%
!! TTGTTGTTTGGTCTCATTAT+TGG + chr1_3:4981344-4981363 None:intergenic 30.0%
! GGACTAGTACCATAATTAAT+AGG + chr1_3:4981419-4981438 None:intergenic 30.0%
AAAGAATAGTGAATAAGGCT+GGG + chr1_3:4981585-4981604 None:intergenic 30.0%
! TTTAGTGGATCATAACAACA+AGG + chr1_3:4981629-4981648 None:intergenic 30.0%
TTCATAAGGGATGTCAAATA+TGG - chr1_3:4981731-4981750 Msa0098960:intron 30.0%
!!! CTTAAGCACTTTAGTTTTAG+GGG + chr1_3:4982229-4982248 None:intergenic 30.0%
!! TTCTTAGTCTTGAATTGTGT+AGG + chr1_3:4982261-4982280 None:intergenic 30.0%
ACAATTCAAGACTAAGAACA+AGG - chr1_3:4982263-4982282 Msa0098960:intron 30.0%
CAGGAGAAATATTGAAGAAT+TGG + chr1_3:4980339-4980358 None:intergenic 30.0%
CAATATTTCTCCTGTTAATC+AGG - chr1_3:4980345-4980364 Msa0098960:CDS 30.0%
! TTTAACTTACTTGGAGACTT+TGG - chr1_3:4980382-4980401 Msa0098960:CDS 30.0%
AGAAAATCATGATCATCATC+AGG - chr1_3:4980405-4980424 Msa0098960:CDS 30.0%
AAACAACACAATTACTATGG+TGG + chr1_3:4980682-4980701 None:intergenic 30.0%
!!! TTTTGAAACAAGAGAACGTT+TGG - chr1_3:4980699-4980718 Msa0098960:intron 30.0%
ATTACTATAGGATCATAAGC+TGG - chr1_3:4981091-4981110 Msa0098960:intron 30.0%
CACAAATTTATCATCATCCT+TGG - chr1_3:4981208-4981227 Msa0098960:CDS 30.0%
!! TTGTTGTTTGGTCTCATTAT+TGG + chr1_3:4981344-4981363 None:intergenic 30.0%
! GGACTAGTACCATAATTAAT+AGG + chr1_3:4981419-4981438 None:intergenic 30.0%
AAAGAATAGTGAATAAGGCT+GGG + chr1_3:4981585-4981604 None:intergenic 30.0%
! TTTAGTGGATCATAACAACA+AGG + chr1_3:4981629-4981648 None:intergenic 30.0%
TTCATAAGGGATGTCAAATA+TGG - chr1_3:4981731-4981750 Msa0098960:intron 30.0%
!!! CTTAAGCACTTTAGTTTTAG+GGG + chr1_3:4982229-4982248 None:intergenic 30.0%
!! TTCTTAGTCTTGAATTGTGT+AGG + chr1_3:4982261-4982280 None:intergenic 30.0%
ACAATTCAAGACTAAGAACA+AGG - chr1_3:4982263-4982282 Msa0098960:intron 30.0%
TGACCTTGTAGTAAGGAATT+AGG + chr1_3:4980313-4980332 None:intergenic 35.0%
!!! TTGGTTTTGACCTTGTAGTA+AGG + chr1_3:4980320-4980339 None:intergenic 35.0%
CCAAGTAAGTTAAAGAAGGT+AGG + chr1_3:4980376-4980395 None:intergenic 35.0%
! CCTACCTTCTTTAACTTACT+TGG - chr1_3:4980373-4980392 Msa0098960:CDS 35.0%
GTCTCCAAGTAAGTTAAAGA+AGG + chr1_3:4980380-4980399 None:intergenic 35.0%
TTCATCAAGTGAGTCAGTTA+TGG - chr1_3:4981163-4981182 Msa0098960:CDS 35.0%
AATGGATGTCTTCAAAGATG+AGG - chr1_3:4981273-4981292 Msa0098960:CDS 35.0%
ACAATCAGAACAAACCCTAA+CGG + chr1_3:4981501-4981520 None:intergenic 35.0%
TGGGATTAACGAATTACCTT+TGG + chr1_3:4981566-4981585 None:intergenic 35.0%
GAAAGAATAGTGAATAAGGC+TGG + chr1_3:4981586-4981605 None:intergenic 35.0%
AGAAGTAGTTGAAGTTGTAG+AGG + chr1_3:4982301-4982320 None:intergenic 35.0%
TGATTATGATGAAGCAGCAA+CGG - chr1_3:4982374-4982393 Msa0098960:CDS 35.0%
TGACCTTGTAGTAAGGAATT+AGG + chr1_3:4980313-4980332 None:intergenic 35.0%
!!! TTGGTTTTGACCTTGTAGTA+AGG + chr1_3:4980320-4980339 None:intergenic 35.0%
CCAAGTAAGTTAAAGAAGGT+AGG + chr1_3:4980376-4980395 None:intergenic 35.0%
! CCTACCTTCTTTAACTTACT+TGG - chr1_3:4980373-4980392 Msa0098960:CDS 35.0%
GTCTCCAAGTAAGTTAAAGA+AGG + chr1_3:4980380-4980399 None:intergenic 35.0%
TTCATCAAGTGAGTCAGTTA+TGG - chr1_3:4981163-4981182 Msa0098960:CDS 35.0%
AATGGATGTCTTCAAAGATG+AGG - chr1_3:4981273-4981292 Msa0098960:CDS 35.0%
ACAATCAGAACAAACCCTAA+CGG + chr1_3:4981501-4981520 None:intergenic 35.0%
TGGGATTAACGAATTACCTT+TGG + chr1_3:4981566-4981585 None:intergenic 35.0%
GAAAGAATAGTGAATAAGGC+TGG + chr1_3:4981586-4981605 None:intergenic 35.0%
AGAAGTAGTTGAAGTTGTAG+AGG + chr1_3:4982301-4982320 None:intergenic 35.0%
TGATTATGATGAAGCAGCAA+CGG - chr1_3:4982374-4982393 Msa0098960:CDS 35.0%
TGTAGTAAGGAATTAGGACC+TGG + chr1_3:4980307-4980326 None:intergenic 40.0%
GGTCCTAATTCCTTACTACA+AGG - chr1_3:4980307-4980326 Msa0098960:CDS 40.0%
TGAAACAAGAGAACGTTTGG+TGG - chr1_3:4980702-4980721 Msa0098960:intron 40.0%
AAGCTGGCATTTCATCATGA+TGG - chr1_3:4981107-4981126 Msa0098960:intron 40.0%
TTTATCATCATCCTTGGAGC+TGG - chr1_3:4981214-4981233 Msa0098960:CDS 40.0%
AGCAGCAAAAAGATGAGTCA+CGG - chr1_3:4981242-4981261 Msa0098960:CDS 40.0%
TGGTCTCATTATTGGAGTTG+TGG + chr1_3:4981336-4981355 None:intergenic 40.0%
! GTGGCTGCAATATTGTTGTT+TGG + chr1_3:4981356-4981375 None:intergenic 40.0%
!! CTTGATAGCTTTGTCAGTAG+TGG + chr1_3:4981375-4981394 None:intergenic 40.0%
! TGTTACTACTAGGGCTTGTT+TGG + chr1_3:4981466-4981485 None:intergenic 40.0%
TGTTACCGCTGTTACTACTA+GGG + chr1_3:4981475-4981494 None:intergenic 40.0%
TTGTTACCGCTGTTACTACT+AGG + chr1_3:4981476-4981495 None:intergenic 40.0%
GAATTACCTTTGGACCCATA+GGG + chr1_3:4981556-4981575 None:intergenic 40.0%
TTTGCAATGCTTGTGGAATC+AGG - chr1_3:4982151-4982170 Msa0098960:intron 40.0%
ACAACTTCAACTACTTCTGC+TGG - chr1_3:4982303-4982322 Msa0098960:CDS 40.0%
! CTTCTGGTGGATATATCTTC+TGG - chr1_3:4982405-4982424 Msa0098960:CDS 40.0%
TGTAGTAAGGAATTAGGACC+TGG + chr1_3:4980307-4980326 None:intergenic 40.0%
GGTCCTAATTCCTTACTACA+AGG - chr1_3:4980307-4980326 Msa0098960:CDS 40.0%
TGAAACAAGAGAACGTTTGG+TGG - chr1_3:4980702-4980721 Msa0098960:intron 40.0%
AAGCTGGCATTTCATCATGA+TGG - chr1_3:4981107-4981126 Msa0098960:intron 40.0%
TTTATCATCATCCTTGGAGC+TGG - chr1_3:4981214-4981233 Msa0098960:CDS 40.0%
AGCAGCAAAAAGATGAGTCA+CGG - chr1_3:4981242-4981261 Msa0098960:CDS 40.0%
TGGTCTCATTATTGGAGTTG+TGG + chr1_3:4981336-4981355 None:intergenic 40.0%
! GTGGCTGCAATATTGTTGTT+TGG + chr1_3:4981356-4981375 None:intergenic 40.0%
!! CTTGATAGCTTTGTCAGTAG+TGG + chr1_3:4981375-4981394 None:intergenic 40.0%
! TGTTACTACTAGGGCTTGTT+TGG + chr1_3:4981466-4981485 None:intergenic 40.0%
TGTTACCGCTGTTACTACTA+GGG + chr1_3:4981475-4981494 None:intergenic 40.0%
TTGTTACCGCTGTTACTACT+AGG + chr1_3:4981476-4981495 None:intergenic 40.0%
GAATTACCTTTGGACCCATA+GGG + chr1_3:4981556-4981575 None:intergenic 40.0%
TTTGCAATGCTTGTGGAATC+AGG - chr1_3:4982151-4982170 Msa0098960:intron 40.0%
ACAACTTCAACTACTTCTGC+TGG - chr1_3:4982303-4982322 Msa0098960:CDS 40.0%
! CTTCTGGTGGATATATCTTC+TGG - chr1_3:4982405-4982424 Msa0098960:CDS 40.0%
AGTAAGGAATTAGGACCTGG+TGG + chr1_3:4980304-4980323 None:intergenic 45.0%
!! GTAGGAGTGTCCTGATTAAC+AGG + chr1_3:4980358-4980377 None:intergenic 45.0%
GCAGCAAAAAGATGAGTCAC+GGG - chr1_3:4981243-4981262 Msa0098960:CDS 45.0%
ACAAGCCCTAGTAGTAACAG+CGG - chr1_3:4981467-4981486 Msa0098960:CDS 45.0%
CGAATTACCTTTGGACCCAT+AGG + chr1_3:4981557-4981576 None:intergenic 45.0%
! CAGTCACTTTGCAATGCTTG+TGG - chr1_3:4982144-4982163 Msa0098960:intron 45.0%
TTGTGGAATCAGGCAGAGAA+AGG - chr1_3:4982161-4982180 Msa0098960:intron 45.0%
TTATGATGAAGCAGCAACGG+CGG - chr1_3:4982377-4982396 Msa0098960:CDS 45.0%
AGTAAGGAATTAGGACCTGG+TGG + chr1_3:4980304-4980323 None:intergenic 45.0%
!! GTAGGAGTGTCCTGATTAAC+AGG + chr1_3:4980358-4980377 None:intergenic 45.0%
GCAGCAAAAAGATGAGTCAC+GGG - chr1_3:4981243-4981262 Msa0098960:CDS 45.0%
ACAAGCCCTAGTAGTAACAG+CGG - chr1_3:4981467-4981486 Msa0098960:CDS 45.0%
CGAATTACCTTTGGACCCAT+AGG + chr1_3:4981557-4981576 None:intergenic 45.0%
! CAGTCACTTTGCAATGCTTG+TGG - chr1_3:4982144-4982163 Msa0098960:intron 45.0%
TTGTGGAATCAGGCAGAGAA+AGG - chr1_3:4982161-4982180 Msa0098960:intron 45.0%
TTATGATGAAGCAGCAACGG+CGG - chr1_3:4982377-4982396 Msa0098960:CDS 45.0%
!!! TATTAATATATTTTTTTTGT+GGG + chr1_3:4981704-4981723 None:intergenic 5.0%
!!! ATATTAATATATTTTTTTTG+TGG + chr1_3:4981705-4981724 None:intergenic 5.0%
!!! TAATTTTTATTATTATATCA+CGG - chr1_3:4981985-4982004 Msa0098960:intron 5.0%
!!! TATTAATATATTTTTTTTGT+GGG + chr1_3:4981704-4981723 None:intergenic 5.0%
!!! ATATTAATATATTTTTTTTG+TGG + chr1_3:4981705-4981724 None:intergenic 5.0%
!!! TAATTTTTATTATTATATCA+CGG - chr1_3:4981985-4982004 Msa0098960:intron 5.0%
!! CCTGGTGGATTCAGAGAAAC+AGG + chr1_3:4980289-4980308 None:intergenic 50.0%
! CCTGTTTCTCTGAATCCACC+AGG - chr1_3:4980286-4980305 Msa0098960:CDS 50.0%
TGAGTCACGGGTCTGAGAAA+TGG - chr1_3:4981255-4981274 Msa0098960:CDS 50.0%
ACAGCGGTAACAACACCGTT+AGG - chr1_3:4981483-4981502 Msa0098960:CDS 50.0%
CAGCGGTAACAACACCGTTA+GGG - chr1_3:4981484-4981503 Msa0098960:CDS 50.0%
GTACATCCCATACCCCACTA+TGG - chr1_3:4981522-4981541 Msa0098960:CDS 50.0%
! ACTCCTCCATAGTGGGGTAT+GGG + chr1_3:4981531-4981550 None:intergenic 50.0%
TCAGGCAGAGAAAGGCAAGA+AGG - chr1_3:4982169-4982188 Msa0098960:intron 50.0%
CAGGCAGAGAAAGGCAAGAA+GGG - chr1_3:4982170-4982189 Msa0098960:intron 50.0%
AGGGGATGTAGCCAAACCAT+TGG + chr1_3:4982211-4982230 None:intergenic 50.0%
!! CCTGGTGGATTCAGAGAAAC+AGG + chr1_3:4980289-4980308 None:intergenic 50.0%
! CCTGTTTCTCTGAATCCACC+AGG - chr1_3:4980286-4980305 Msa0098960:CDS 50.0%
TGAGTCACGGGTCTGAGAAA+TGG - chr1_3:4981255-4981274 Msa0098960:CDS 50.0%
ACAGCGGTAACAACACCGTT+AGG - chr1_3:4981483-4981502 Msa0098960:CDS 50.0%
CAGCGGTAACAACACCGTTA+GGG - chr1_3:4981484-4981503 Msa0098960:CDS 50.0%
GTACATCCCATACCCCACTA+TGG - chr1_3:4981522-4981541 Msa0098960:CDS 50.0%
! ACTCCTCCATAGTGGGGTAT+GGG + chr1_3:4981531-4981550 None:intergenic 50.0%
TCAGGCAGAGAAAGGCAAGA+AGG - chr1_3:4982169-4982188 Msa0098960:intron 50.0%
CAGGCAGAGAAAGGCAAGAA+GGG - chr1_3:4982170-4982189 Msa0098960:intron 50.0%
AGGGGATGTAGCCAAACCAT+TGG + chr1_3:4982211-4982230 None:intergenic 50.0%
GCTGCTATCTTCCAGCTCCA+AGG + chr1_3:4981228-4981247 None:intergenic 55.0%
CATCCCATACCCCACTATGG+AGG - chr1_3:4981525-4981544 Msa0098960:CDS 55.0%
! CACTCCTCCATAGTGGGGTA+TGG + chr1_3:4981532-4981551 None:intergenic 55.0%
CATACCCCACTATGGAGGAG+TGG - chr1_3:4981530-4981549 Msa0098960:CDS 55.0%
TAGGGCCACTCCTCCATAGT+GGG + chr1_3:4981538-4981557 None:intergenic 55.0%
ATAGGGCCACTCCTCCATAG+TGG + chr1_3:4981539-4981558 None:intergenic 55.0%
ACTATGGAGGAGTGGCCCTA+TGG - chr1_3:4981538-4981557 Msa0098960:CDS 55.0%
CTATGGAGGAGTGGCCCTAT+GGG - chr1_3:4981539-4981558 Msa0098960:CDS 55.0%
GAGAAAGGCAAGAAGGGCCA+TGG - chr1_3:4982176-4982195 Msa0098960:intron 55.0%
ACCATTGGCAGCTTCAGCCA+TGG + chr1_3:4982196-4982215 None:intergenic 55.0%
GGCTGAAGCTGCCAATGGTT+TGG - chr1_3:4982197-4982216 Msa0098960:intron 55.0%
GCTGCTATCTTCCAGCTCCA+AGG + chr1_3:4981228-4981247 None:intergenic 55.0%
CATCCCATACCCCACTATGG+AGG - chr1_3:4981525-4981544 Msa0098960:CDS 55.0%
! CACTCCTCCATAGTGGGGTA+TGG + chr1_3:4981532-4981551 None:intergenic 55.0%
CATACCCCACTATGGAGGAG+TGG - chr1_3:4981530-4981549 Msa0098960:CDS 55.0%
TAGGGCCACTCCTCCATAGT+GGG + chr1_3:4981538-4981557 None:intergenic 55.0%
ATAGGGCCACTCCTCCATAG+TGG + chr1_3:4981539-4981558 None:intergenic 55.0%
ACTATGGAGGAGTGGCCCTA+TGG - chr1_3:4981538-4981557 Msa0098960:CDS 55.0%
CTATGGAGGAGTGGCCCTAT+GGG - chr1_3:4981539-4981558 Msa0098960:CDS 55.0%
GAGAAAGGCAAGAAGGGCCA+TGG - chr1_3:4982176-4982195 Msa0098960:intron 55.0%
ACCATTGGCAGCTTCAGCCA+TGG + chr1_3:4982196-4982215 None:intergenic 55.0%
GGCTGAAGCTGCCAATGGTT+TGG - chr1_3:4982197-4982216 Msa0098960:intron 55.0%
AGGGCCACTCCTCCATAGTG+GGG + chr1_3:4981537-4981556 None:intergenic 60.0%
GAGTGGCCCTATGGGTCCAA+AGG - chr1_3:4981547-4981566 Msa0098960:CDS 60.0%
GCCATGGCTGAAGCTGCCAA+TGG - chr1_3:4982192-4982211 Msa0098960:intron 60.0%
AGGGCCACTCCTCCATAGTG+GGG + chr1_3:4981537-4981556 None:intergenic 60.0%
GAGTGGCCCTATGGGTCCAA+AGG - chr1_3:4981547-4981566 Msa0098960:CDS 60.0%
GCCATGGCTGAAGCTGCCAA+TGG - chr1_3:4982192-4982211 Msa0098960:intron 60.0%
AGCAACGGCGGCACGACTTC+TGG - chr1_3:4982389-4982408 Msa0098960:CDS 65.0%
AACGGCGGCACGACTTCTGG+TGG - chr1_3:4982392-4982411 Msa0098960:CDS 65.0%
AGCAACGGCGGCACGACTTC+TGG - chr1_3:4982389-4982408 Msa0098960:CDS 65.0%
AACGGCGGCACGACTTCTGG+TGG - chr1_3:4982392-4982411 Msa0098960:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4980280 4982440 4980280 ID=Msa0098960;Name=Msa0098960
chr1_3 mRNA 4980280 4982440 4980280 ID=Msa0098960-mRNA-1;Parent=Msa0098960;Name=Msa0098960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0|1|1|1|3|0|302
chr1_3 exon 4982294 4982440 4982294 ID=Msa0098960-mRNA-1:exon:1751;Parent=Msa0098960-mRNA-1
chr1_3 exon 4981152 4981619 4981152 ID=Msa0098960-mRNA-1:exon:1750;Parent=Msa0098960-mRNA-1
chr1_3 exon 4980280 4980573 4980280 ID=Msa0098960-mRNA-1:exon:1749;Parent=Msa0098960-mRNA-1
chr1_3 CDS 4982294 4982440 4982294 ID=Msa0098960-mRNA-1:cds;Parent=Msa0098960-mRNA-1
chr1_3 CDS 4981152 4981619 4981152 ID=Msa0098960-mRNA-1:cds;Parent=Msa0098960-mRNA-1
chr1_3 CDS 4980280 4980573 4980280 ID=Msa0098960-mRNA-1:cds;Parent=Msa0098960-mRNA-1
Gene Sequence

>Msa0098960

ATGACTCCTGTTTCTCTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCTTCAATATTTCTCCTGTTAATCAGGACACTCCTACCTTCTTTAACTTACTTGGAGACTTTGGAGAAAATCATGATCATCATCAGGATCATAAGCTGGCATTTCATCATGATGGATCATCATCAAGCAATCACCAACAACTCTATAATTCATCAAGTGAGTCAGTTATGGTTGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTGGAAGATAGCAGCAAAAAGATGAGTCACGGGTCTGAGAAATGGATGTCTTCAAAGATGAGGTTGATGAATAAAATGATCAACACAACTGCTACTGTTGCCACAACTCCAATAATGAGACCAAACAACAATATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAAACCTATTAATTATGGTACTAGTCCAAGAAATCAAAATATAAGGTACAACCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTACATCCCATACCCCACTATGGAGGAGTGGCCCTATGGGTCCAAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGTTTGGCTACATCCCCTAAAACTAAAGTGCTTAAGATAAAGAAGCCTACACAATTCAAGACTAAGAACAAGGCTTCTACTAGTACCTCTACAACTTCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAAGAAACTTGAATCTTTTCCATTAGATTATGATTATGATGAAGCAGCAACGGCGGCACGACTTCTGGTGGATATATCTTCTGGTGTTACTTATTGA

Protein sequence

>Msa0098960

MTPVSLNPPGPNSLLQGQNQFFNISPVNQDTPTFFNLLGDFGENHDHHQDHKLAFHHDGSSSSNHQQLYNSSSESVMVDSSSARDTNLSSSLELEDSSKKMSHGSEKWMSSKMRLMNKMINTTATVATTPIMRPNNNIAATTDKAIKTTTPMMKPINYGTSPRNQNIRYNQTSPSSNSGNNTVRVCSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKTKVLKIKKPTQFKTKNKASTSTSTTSTTSAGSSSQDVKKLESFPLDYDYDEAATAARLLVDISSGVTY*