AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0546480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546480 MtrunA17_Chr4g0028151 94.458 812 10 2 1 812 1 777 0.0 1556
Msa0546480 MtrunA17_Chr4g0028141 80.435 782 110 4 34 812 32 773 0.0 1258
Msa0546480 MtrunA17_Chr8g0362241 68.617 564 125 6 253 803 15 539 0.0 767
Msa0546480 MtrunA17_Chr7g0251371 36.858 681 373 9 149 808 765 1409 2.69e-152 481
Msa0546480 MtrunA17_Chr8g0362251 62.205 127 47 1 132 257 72 198 3.32e-48 169
Msa0546480 MtrunA17_Chr2g0298731 26.860 484 273 17 333 780 144 582 1.21e-33 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546480 AT1G08130.1 62.843 837 239 12 1 812 1 790 0.0 1021
Msa0546480 AT1G49250.1 58.451 710 228 4 104 812 14 657 0.0 810
Msa0546480 AT1G66730.1 36.765 680 372 9 146 803 748 1391 2.30e-144 460
Msa0546480 AT5G57160.1 25.528 521 298 21 333 809 145 619 6.16e-25 112
Msa0546480 AT5G57160.2 27.027 296 168 11 551 809 1 285 7.02e-15 79.7

Find 222 sgRNAs with CRISPR-Local

Find 595 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAACATGATTAGGTATT+TGG 0.104802 4_1:+38215717 Msa0546480:three_prime_UTR
CAAGCATGTCATTTGGAAAT+TGG 0.143064 4_1:+38215797 Msa0546480:three_prime_UTR
TCAAAAGGAGACTGAATTTC+AGG 0.197824 4_1:-38211114 None:intergenic
TGAAATTCTAAATAAGTTTC+AGG 0.202495 4_1:+38211496 Msa0546480:CDS
TTTGATTTGTTGTACCTTAA+TGG 0.213245 4_1:+38213157 Msa0546480:CDS
ATTGAGACAGATACATTTCT+TGG 0.216627 4_1:+38211642 Msa0546480:intron
ACAGATTAAGATTCAGTATA+AGG 0.259053 4_1:+38208586 Msa0546480:CDS
TGGTGATGCTTCGATTATTA+AGG 0.267756 4_1:+38208532 Msa0546480:CDS
ACAGAGAATCCTTCCTTTCC+AGG 0.271926 4_1:+38212852 Msa0546480:CDS
GGAGTAAAATCACATTTCTT+TGG 0.281886 4_1:-38211425 None:intergenic
ATTGGCGGGAAGATGGATTT+GGG 0.287865 4_1:-38207800 None:intergenic
AATTGGCGGGAAGATGGATT+TGG 0.295135 4_1:-38207801 None:intergenic
TCCGTTTCTGTTTCTCTGTT+TGG 0.297444 4_1:+38208346 Msa0546480:CDS
CCCACTGCAGCTCGGTAAAC+AGG 0.304641 4_1:-38215154 None:intergenic
ACCTCTTTCGACGAAGAATC+TGG 0.312752 4_1:+38213706 Msa0546480:CDS
AGCCTGATGCTTTGACTATT+AGG 0.315018 4_1:+38209210 Msa0546480:CDS
ACTTCTTATCCAACATGATT+AGG 0.322885 4_1:+38215710 Msa0546480:three_prime_UTR
TCCGAGTTCGGTTGTTTGTT+GGG 0.323669 4_1:+38208307 Msa0546480:CDS
GGCGGCGGCGGCGCGTGCGC+CGG 0.325535 4_1:-38208027 None:intergenic
GAAACTGAAGAAAGATTATA+TGG 0.336761 4_1:+38214250 Msa0546480:CDS
ATGCGCAAATACCTATTGTT+TGG 0.342722 4_1:-38215774 None:intergenic
TTTCAAAGCATTTGTAAGAT+AGG 0.347737 4_1:+38214641 Msa0546480:CDS
GAAGAAGTGCTTGGCCATTA+AGG 0.354488 4_1:-38213171 None:intergenic
TATAAATGTTCACAGGAATC+TGG 0.355908 4_1:+38210832 Msa0546480:intron
TGCGCATGAAGGGTTGGAAT+TGG 0.357084 4_1:+38208505 Msa0546480:CDS
ATCCGAGTTCGGTTGTTTGT+TGG 0.357249 4_1:+38208306 Msa0546480:CDS
TTCTTCATGAACAGTTTCTT+CGG 0.359805 4_1:-38208183 None:intergenic
CACTCCTTACGGATGGTGTA+TGG 0.366647 4_1:+38211396 Msa0546480:CDS
ACCTGGACGGCTCTAACAAC+AGG 0.368776 4_1:-38210048 None:intergenic
AGAGCCAGGGACCTTTGGTT+TGG 0.369744 4_1:-38214827 None:intergenic
CTTGTGTATGTATTAGTGTT+TGG 0.370748 4_1:+38215857 Msa0546480:three_prime_UTR
CTATCATGATACTGCACTTA+AGG 0.371394 4_1:+38216015 Msa0546480:three_prime_UTR
TGTAGCTTTGAGTGACATAA+AGG 0.375806 4_1:+38213114 Msa0546480:CDS
GGAGAGAGGGAGTGAGAGAA+TGG 0.378469 4_1:-38207943 None:intergenic
AAGCATGTCATTTGGAAATT+GGG 0.381754 4_1:+38215798 Msa0546480:three_prime_UTR
TCGAAGATGATGATGTATTT+CGG 0.386923 4_1:-38208220 None:intergenic
GAGCCAGGGACCTTTGGTTT+GGG 0.389083 4_1:-38214826 None:intergenic
TCACTAGATTTGGTACCTAT+TGG 0.390041 4_1:+38214367 Msa0546480:CDS
GAGGAACAAAACTAACTGTT+TGG 0.390179 4_1:-38215993 None:intergenic
CAAAGGTAGGATCATGATAA+AGG 0.395623 4_1:-38216098 None:intergenic
TTCCAGACAAAATTGCGAAT+TGG 0.396547 4_1:+38211018 Msa0546480:intron
TTACTCCTGGTGTTCCGGTT+GGG 0.398083 4_1:+38211441 Msa0546480:CDS
AACCTACATTGAAACATTAT+CGG 0.399806 4_1:-38215909 None:intergenic
TGCGCATCAAGCATGTCATT+TGG 0.401243 4_1:+38215790 Msa0546480:three_prime_UTR
GCCTGCTCAGGAGCTTTGTC+AGG 0.402859 4_1:-38215365 None:intergenic
AGATGTAATTGGCGGGAAGA+TGG 0.403238 4_1:-38207807 None:intergenic
TAATGGCCAAGCACTTCTTC+AGG 0.406702 4_1:+38213174 Msa0546480:CDS
TTGTCGAAGGCGGAGGGTGG+TGG 0.406919 4_1:-38207996 None:intergenic
CATAGGGGACTCACTAGATT+TGG 0.414067 4_1:+38214357 Msa0546480:CDS
GAAGGGTTGGAATTGGGAAT+TGG 0.414979 4_1:+38208512 Msa0546480:CDS
ATATATAATCCGTTTGCTAC+AGG 0.417845 4_1:+38210927 Msa0546480:CDS
CCTCCAAGCGGTCACTCAAC+TGG 0.422032 4_1:+38214225 Msa0546480:CDS
TCAGACGAGGAGGCCTGCTC+AGG 0.423980 4_1:-38215377 None:intergenic
TAATGGAGGCTCCAAACAAT+AGG 0.424609 4_1:+38215763 Msa0546480:three_prime_UTR
CCATGGTGTAATTAAGCTAA+TGG 0.425294 4_1:+38215746 Msa0546480:three_prime_UTR
TTGAGTGGCGATGGAGGAGT+AGG 0.431353 4_1:-38208098 None:intergenic
TCTTCATGAACAGTTTCTTC+GGG 0.434070 4_1:-38208182 None:intergenic
CCCTGTTGTTAGAGCCGTCC+AGG 0.436329 4_1:+38210047 Msa0546480:CDS
CAGATACATTTCTTGGAGAA+TGG 0.437323 4_1:+38211649 Msa0546480:intron
TTTACTCCTGGTGTTCCGGT+TGG 0.439220 4_1:+38211440 Msa0546480:CDS
TACACCGGAGGATCTTGTTC+CGG 0.442280 4_1:+38208451 Msa0546480:CDS
GGCGAGTTTCGATCCGAGTT+CGG 0.444692 4_1:+38208295 Msa0546480:CDS
AGAGGGAGTGAGAGAATGGA+AGG 0.445413 4_1:-38207939 None:intergenic
GCGCATGAAGGGTTGGAATT+GGG 0.446162 4_1:+38208506 Msa0546480:CDS
GTACCTATTGGTGCTTTCCA+TGG 0.447882 4_1:+38214379 Msa0546480:CDS
GCCTGACAAAGCTCCTGAGC+AGG 0.451547 4_1:+38215364 Msa0546480:CDS
ATGTTGTTGCTGCAGTTTCA+AGG 0.451764 4_1:+38211725 Msa0546480:CDS
ACACAATCACAATGACAAAC+AGG 0.454140 4_1:+38215547 Msa0546480:CDS
ATTGGTGCTTTCCATGGTCG+TGG 0.454967 4_1:+38214385 Msa0546480:CDS
TGCTAACATCCACTCTGAAA+TGG 0.455762 4_1:-38207844 None:intergenic
CTCTGAAATGGTGTTGCGGC+GGG 0.463180 4_1:-38207832 None:intergenic
TTCCCCGTCTAGTTCGAGTT+CGG 0.467023 4_1:+38215342 Msa0546480:CDS
AGCTCGGTAAACAGGGCTAA+TGG 0.467833 4_1:-38215146 None:intergenic
CGACCATGGAAAGCACCAAT+AGG 0.468385 4_1:-38214382 None:intergenic
TGATGTCTTGTAGGTGTGTA+TGG 0.470234 4_1:+38214578 Msa0546480:intron
AATTGTGTCTGCACTCCTTA+CGG 0.472771 4_1:+38211385 Msa0546480:CDS
TTCCTAATAGTCAAAGCATC+AGG 0.474419 4_1:-38209212 None:intergenic
TTCGACGACAAATAAACAAC+CGG 0.475389 4_1:-38208470 None:intergenic
CAGAAGGGACCCAATGTGCC+TGG 0.476528 4_1:+38215829 Msa0546480:three_prime_UTR
CCAGTTGAGTGACCGCTTGG+AGG 0.476893 4_1:-38214225 None:intergenic
GAAACTGCAGCAACAACATC+AGG 0.477339 4_1:-38211721 None:intergenic
CCCTGTTTACCGAGCTGCAG+TGG 0.477713 4_1:+38215153 Msa0546480:CDS
AATCAATCAATCCTGATGTA+TGG 0.482280 4_1:+38214946 Msa0546480:CDS
TCCCGATAATGTTTCAATGT+AGG 0.483474 4_1:+38215907 Msa0546480:three_prime_UTR
GGGCATAGTAGATTCCAATA+AGG 0.484866 4_1:+38215174 Msa0546480:CDS
TTTGACAGCATAGGCCCAAC+CGG 0.485180 4_1:-38211455 None:intergenic
CAGCCAGTTGAGTGACCGCT+TGG 0.486186 4_1:-38214228 None:intergenic
TGTACTCTGACCTAGCTTGA+AGG 0.486426 4_1:-38215685 None:intergenic
GGTAAACAGGGCTAATGGTC+AGG 0.487201 4_1:-38215141 None:intergenic
ACCTACATTGAAACATTATC+GGG 0.488728 4_1:-38215908 None:intergenic
GGGAATAGTCGCTGAATTGA+AGG 0.489755 4_1:+38208244 Msa0546480:CDS
CATGGTCGTGGGAAACGTAC+AGG 0.490701 4_1:+38214397 Msa0546480:CDS
CATGAGTTTGTCGAAGGCGG+AGG 0.491912 4_1:-38208003 None:intergenic
CAGAGAAACAGAAACGGAAC+AGG 0.491931 4_1:-38208341 None:intergenic
TTCTTTCATTTAGGTGTGGG+AGG 0.492239 4_1:+38215105 Msa0546480:intron
TGAGTGGCGATGGAGGAGTA+GGG 0.493124 4_1:-38208097 None:intergenic
AACATTTCATCTTATTGCAA+AGG 0.493161 4_1:+38209244 Msa0546480:CDS
CTGACCTAGCTTGAAGGTAA+AGG 0.493868 4_1:-38215679 None:intergenic
TCCCAACAAACAACCGAACT+CGG 0.494341 4_1:-38208308 None:intergenic
CAACAAGAAGTGACTTTATG+TGG 0.495053 4_1:-38210882 None:intergenic
CAAACTCTCTTGGCTGCCTT+AGG 0.497744 4_1:+38211051 Msa0546480:CDS
AGGCCGAACTCGAACTAGAC+GGG 0.497952 4_1:-38215345 None:intergenic
AATTAACTTACCTCTTCAAA+AGG 0.498329 4_1:-38211129 None:intergenic
AATTCCAACCCTTCATGCGC+AGG 0.499306 4_1:-38208503 None:intergenic
TGACAGGACAAAGGTGACTT+AGG 0.501127 4_1:+38209143 Msa0546480:intron
TCCAGATTCTTCGTCGAAAG+AGG 0.501881 4_1:-38213707 None:intergenic
GGAGATGATGAAGGTGGAGA+GGG 0.501993 4_1:-38208059 None:intergenic
TGCGGCGGGATAGATGTAAT+TGG 0.510437 4_1:-38207818 None:intergenic
CAAGCAATACCAGGCACATT+GGG 0.510447 4_1:-38215838 None:intergenic
CATCTTAACATTTACTCACA+TGG 0.510521 4_1:-38215651 None:intergenic
AGCAAACGGATTATATATAG+AGG 0.513938 4_1:-38210922 None:intergenic
AGTCGCTGAATTGAAGGAAA+AGG 0.514554 4_1:+38208250 Msa0546480:CDS
GATGACAATGAAGATGATTG+AGG 0.514702 4_1:+38215569 Msa0546480:CDS
CTCGCATCAAACCATACATC+AGG 0.515232 4_1:-38214957 None:intergenic
ATGACAATGAAGATGATTGA+GGG 0.516475 4_1:+38215570 Msa0546480:CDS
AGAATTGCGCCTGCGCATGA+AGG 0.518228 4_1:+38208494 Msa0546480:CDS
CTTCAGTGTACACAGCAGCT+TGG 0.521080 4_1:-38211074 None:intergenic
GATTATTAAGGCGCTTGCTG+AGG 0.522455 4_1:+38208544 Msa0546480:CDS
TAGAATTTCAGATACACCCT+TGG 0.523022 4_1:-38211483 None:intergenic
CGCTTGCTGAGGCGTGTGGA+AGG 0.524296 4_1:+38208555 Msa0546480:CDS
GCAGGCCTCCTCGTCTGAGC+AGG 0.524759 4_1:+38215382 Msa0546480:CDS
ATATGCCGAGCAAACTCTCT+TGG 0.529888 4_1:+38211041 Msa0546480:CDS
CTGAATCTTAATCTGTTGCT+CGG 0.531157 4_1:-38208579 None:intergenic
GCCAAACAGAGAAACAGAAA+CGG 0.531840 4_1:-38208347 None:intergenic
ATGAGATTACCTGGAAAGGA+AGG 0.533507 4_1:-38212861 None:intergenic
ATGCAACAAGTTCACAATCA+AGG 0.533772 4_1:-38212816 None:intergenic
GATGTATTTCGGATCTTGCT+CGG 0.534524 4_1:-38208209 None:intergenic
CCGCTTGGAGGGTTCATATG+TGG 0.534655 4_1:-38214213 None:intergenic
TCCGCAGCTGAAGAAGAAAC+CGG 0.534838 4_1:+38208274 Msa0546480:CDS
TTTCAGACATACTATAAATG+TGG 0.536516 4_1:+38214921 Msa0546480:intron
AAATACATCATCATCTTCGA+AGG 0.537584 4_1:+38208223 Msa0546480:CDS
AGAAATGCTGAACGGAACAC+TGG 0.537995 4_1:+38211691 Msa0546480:CDS
ACAAGCAATACCAGGCACAT+TGG 0.540716 4_1:-38215839 None:intergenic
ACTCCTTACGGATGGTGTAT+GGG 0.541670 4_1:+38211397 Msa0546480:CDS
GGCAGCCAAGAGAGTTTGCT+CGG 0.541848 4_1:-38211046 None:intergenic
TAAAAGGTGTTACCTCTCTA+CGG 0.544535 4_1:-38213210 None:intergenic
GGCGAGGAGTGGAGGAGAGA+GGG 0.547227 4_1:-38207956 None:intergenic
TGCGCCTGCGCATGAAGGGT+TGG 0.549087 4_1:+38208499 Msa0546480:CDS
CGGCGAGGAGTGGAGGAGAG+AGG 0.550622 4_1:-38207957 None:intergenic
ATACGATGGAGAGCGTGCTC+AGG 0.551459 4_1:+38211544 Msa0546480:CDS
GAGTGACGAAGAAAATTTGA+CGG 0.552014 4_1:-38207913 None:intergenic
AACAACATCAAATGATGTTG+AGG 0.552524 4_1:+38213750 Msa0546480:CDS
CAGTTGAGTGACCGCTTGGA+GGG 0.554490 4_1:-38214224 None:intergenic
GGGAGATGATGAAGGTGGAG+AGG 0.557440 4_1:-38208060 None:intergenic
CGACATTGCGCGGCGAGGAG+TGG 0.558536 4_1:-38207967 None:intergenic
ATAGGCCCAACCGGAACACC+AGG 0.558999 4_1:-38211446 None:intergenic
GAGTGGCGATGGAGGAGTAG+GGG 0.559751 4_1:-38208096 None:intergenic
GTACACAGCAGCTTGGCCTA+AGG 0.560199 4_1:-38211067 None:intergenic
GCCGGTTTCTTCTTCAGCTG+CGG 0.560705 4_1:-38208275 None:intergenic
GGAGACTGAATTTCAGGAGG+CGG 0.562772 4_1:-38211108 None:intergenic
AAATTGCAACCTGTAGCAAA+CGG 0.563169 4_1:-38210936 None:intergenic
AAATCCTTTACCTTCAAGCT+AGG 0.563170 4_1:+38215675 Msa0546480:three_prime_UTR
TGATGCTTTGACTATTAGGA+AGG 0.564438 4_1:+38209214 Msa0546480:CDS
TTGGCGGGAAGATGGATTTG+GGG 0.564683 4_1:-38207799 None:intergenic
TAAGTGCAGTATCATGATAG+AGG 0.564739 4_1:-38216012 None:intergenic
GAATTGCGCCTGCGCATGAA+GGG 0.565299 4_1:+38208495 Msa0546480:CDS
CATTGCGCGGCGAGGAGTGG+AGG 0.567800 4_1:-38207964 None:intergenic
TTGGTGCTTTCCATGGTCGT+GGG 0.568717 4_1:+38214386 Msa0546480:CDS
GAGGGAGTGAGAGAATGGAA+GGG 0.569043 4_1:-38207938 None:intergenic
CCTGTTTACCGAGCTGCAGT+GGG 0.571614 4_1:+38215154 Msa0546480:CDS
TGCCAAATACCTAATCATGT+TGG 0.571918 4_1:-38215719 None:intergenic
TTGACAAAGCCATTGATGCA+AGG 0.578584 4_1:+38213788 Msa0546480:CDS
CCGCACAATTTGCTAACTCT+AGG 0.580189 4_1:-38215949 None:intergenic
TGGGAATCACTTTAGAGCGA+AGG 0.581370 4_1:-38214807 None:intergenic
ACAACCGGAACAAGATCCTC+CGG 0.582042 4_1:-38208455 None:intergenic
CTCATGGCATCTCAATATGT+AGG 0.582064 4_1:+38216074 Msa0546480:three_prime_UTR
GCGGGATAGATGTAATTGGC+GGG 0.582190 4_1:-38207814 None:intergenic
ACGGAAATGCGAGTAGTGAA+CGG 0.583116 4_1:-38207894 None:intergenic
GCAAATGAGATTACCTGGAA+AGG 0.583985 4_1:-38212865 None:intergenic
GCCTTCGACAAACTCATGTC+CGG 0.584797 4_1:+38208008 Msa0546480:CDS
GAAATGCTGAACGGAACACT+GGG 0.591346 4_1:+38211692 Msa0546480:CDS
TCCACTCTGAAATGGTGTTG+CGG 0.601859 4_1:-38207836 None:intergenic
CAGGCCGAACTCGAACTAGA+CGG 0.602214 4_1:-38215346 None:intergenic
GTTCCCATACACCATCCGTA+AGG 0.607762 4_1:-38211400 None:intergenic
GTGGCTTTGACGACATTGCG+CGG 0.609658 4_1:-38207977 None:intergenic
CCACTGCAGCTCGGTAAACA+GGG 0.610534 4_1:-38215153 None:intergenic
GGCGGGATAGATGTAATTGG+CGG 0.610708 4_1:-38207815 None:intergenic
AACTGTGATACATGCTACAC+CGG 0.611772 4_1:+38208436 Msa0546480:CDS
GCCGGACATGAGTTTGTCGA+AGG 0.614625 4_1:-38208009 None:intergenic
ATACATACACAAGCAATACC+AGG 0.616025 4_1:-38215847 None:intergenic
AAGGCGCTTGCTGAGGCGTG+TGG 0.616663 4_1:+38208551 Msa0546480:CDS
GGACATGAGTTTGTCGAAGG+CGG 0.617303 4_1:-38208006 None:intergenic
TAGGTATTTGGCATACACCA+TGG 0.617785 4_1:+38215729 Msa0546480:three_prime_UTR
AGTTTGTCGAAGGCGGAGGG+TGG 0.619661 4_1:-38207999 None:intergenic
TATGCTGTCAAAAGCAACCA+AGG 0.619881 4_1:+38211466 Msa0546480:CDS
ATGAGTTTGTCGAAGGCGGA+GGG 0.621134 4_1:-38208002 None:intergenic
TATCGTTGTCATAGCACGCA+AGG 0.623901 4_1:-38214610 None:intergenic
TTTAACAGCATAGAAAAGCA+AGG 0.624106 4_1:-38215601 None:intergenic
TGGCGGGAAGATGGATTTGG+GGG 0.625700 4_1:-38207798 None:intergenic
CTACTATGCCCACTGCAGCT+CGG 0.628696 4_1:-38215162 None:intergenic
TTGAATTGAACAGACCTGGA+CGG 0.632127 4_1:-38210061 None:intergenic
GATATGATTAACGAAGAGAG+TGG 0.632135 4_1:+38208374 Msa0546480:CDS
AATACATCATCATCTTCGAA+GGG 0.632490 4_1:+38208224 Msa0546480:CDS
CCTGGACGGCTCTAACAACA+GGG 0.635230 4_1:-38210047 None:intergenic
TAAAGTGATTCCCAAACCAA+AGG 0.638299 4_1:+38214816 Msa0546480:CDS
AAACTTGAAAATCCGTAGAG+AGG 0.640219 4_1:+38213198 Msa0546480:CDS
GTGTCTGCACTCCTTACGGA+TGG 0.640866 4_1:+38211389 Msa0546480:CDS
ACTCTGAAATGGTGTTGCGG+CGG 0.641629 4_1:-38207833 None:intergenic
CTGTACGTTTCCCACGACCA+TGG 0.650836 4_1:-38214396 None:intergenic
AAAGGAGACTGAATTTCAGG+AGG 0.653188 4_1:-38211111 None:intergenic
TTTGACGACATTGCGCGGCG+AGG 0.659336 4_1:-38207972 None:intergenic
GTATTTCGGATCTTGCTCGG+TGG 0.663458 4_1:-38208206 None:intergenic
GGCTCTACTTTGCAGCATAG+GGG 0.664924 4_1:+38214342 Msa0546480:intron
GTACTTTACCTGCTCAGACG+AGG 0.665242 4_1:-38215390 None:intergenic
CCATTAGCTTAATTACACCA+TGG 0.665759 4_1:-38215746 None:intergenic
CCTAGAGTTAGCAAATTGTG+CGG 0.669232 4_1:+38215949 Msa0546480:three_prime_UTR
GCATCATAGACTGAGAAGAA+CGG 0.671258 4_1:-38209184 None:intergenic
ATGCTGTCAAAAGCAACCAA+GGG 0.671976 4_1:+38211467 Msa0546480:CDS
TGGTGTAATTAAGCTAATGG+AGG 0.676426 4_1:+38215749 Msa0546480:three_prime_UTR
GGCCGAACTCGAACTAGACG+GGG 0.685841 4_1:-38215344 None:intergenic
GACGGCTCTAACAACAGGGG+AGG 0.688973 4_1:-38210043 None:intergenic
GAACTCGGATCGAAACTCGC+CGG 0.689493 4_1:-38208293 None:intergenic
TGTATGGTTTGATGCGAGTG+AGG 0.695618 4_1:+38214962 Msa0546480:CDS
TGTGATACATGCTACACCGG+AGG 0.695818 4_1:+38208439 Msa0546480:CDS
ACGTGTGAATACAAATACGA+TGG 0.698464 4_1:+38211530 Msa0546480:CDS
GTTCTTCTCAGTCTATGATG+CGG 0.698544 4_1:+38209186 Msa0546480:CDS
AGAGTTAGCAAATTGTGCGG+CGG 0.698602 4_1:+38215952 Msa0546480:three_prime_UTR
CCACATATGAACCCTCCAAG+CGG 0.704525 4_1:+38214213 Msa0546480:CDS
CTTTACCTGCTCAGACGAGG+AGG 0.708129 4_1:-38215387 None:intergenic
TTTACAGTAGAAATGCTGAA+CGG 0.714187 4_1:+38211683 Msa0546480:CDS
GCCGCAACACCATTTCAGAG+TGG 0.731500 4_1:+38207835 Msa0546480:five_prime_UTR
CTGGACGGCTCTAACAACAG+GGG 0.759830 4_1:-38210046 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTAATTTTATTTAAGT+AGG + chr4_1:38211142-38211161 Msa0546480:intron 10.0%
!!! AAGTTAATTTTATTTAAGTA+GGG + chr4_1:38211143-38211162 Msa0546480:intron 10.0%
!! TATATAAAGAAAAATGTATA+TGG + chr4_1:38212314-38212333 Msa0546480:intron 10.0%
!! TTAAAAATGATAACAAAAAT+AGG - chr4_1:38214456-38214475 None:intergenic 10.0%
!!! TTTTATATTTTCTGAATAAA+GGG + chr4_1:38215305-38215324 Msa0546480:intron 10.0%
!!! TAATGAGTTGAATAAATATA+TGG + chr4_1:38209002-38209021 Msa0546480:intron 15.0%
!!! TTTTAATGACAAATATCAAA+AGG - chr4_1:38209724-38209743 None:intergenic 15.0%
!! AAAAGTAATGATATTGTTAA+CGG + chr4_1:38210545-38210564 Msa0546480:intron 15.0%
!!! TGTTATACAAATAATTTTGT+GGG + chr4_1:38210962-38210981 Msa0546480:intron 15.0%
!! TATAGATAAAAGGAAAATAT+TGG - chr4_1:38211283-38211302 None:intergenic 15.0%
!!! AACAAAATTATTGAAGTTTT+AGG + chr4_1:38211851-38211870 Msa0546480:intron 15.0%
!!! ACAAAATTATTGAAGTTTTA+GGG + chr4_1:38211852-38211871 Msa0546480:intron 15.0%
!! AATGGAGAAAAAATAATATT+CGG + chr4_1:38212097-38212116 Msa0546480:intron 15.0%
!! TTCGGAATAATAAAATAATA+CGG + chr4_1:38212115-38212134 Msa0546480:intron 15.0%
!! ATAATAAAATAATACGGATA+TGG + chr4_1:38212121-38212140 Msa0546480:intron 15.0%
!!! TCTTTTCTTTTTTATTTTGA+GGG + chr4_1:38213539-38213558 Msa0546480:intron 15.0%
!! AGATAGAAATTTCATTATTT+CGG + chr4_1:38213876-38213895 Msa0546480:intron 15.0%
!! TATACTAAATTAAGTAGAAA+TGG - chr4_1:38213985-38214004 None:intergenic 15.0%
!! TTCAGATTTAATTGAAATAT+CGG - chr4_1:38214480-38214499 None:intergenic 15.0%
!! ATTTCAATTAAATCTGAATA+TGG + chr4_1:38214482-38214501 Msa0546480:intron 15.0%
!! ACAAAAAAAAAAAAATGAGA+TGG - chr4_1:38215012-38215031 None:intergenic 15.0%
!! ATTATTATCTTCTTTCATTT+AGG + chr4_1:38215096-38215115 Msa0546480:intron 15.0%
!!! AATTTTTTCAAATACCTTAT+TGG - chr4_1:38215191-38215210 None:intergenic 15.0%
!!! AAATTTGAATTGATGATAAA+AGG + chr4_1:38215206-38215225 Msa0546480:intron 15.0%
!!! AATTTGAATTGATGATAAAA+GGG + chr4_1:38215207-38215226 Msa0546480:intron 15.0%
!!! CTTTTATATTTTCTGAATAA+AGG + chr4_1:38215304-38215323 Msa0546480:intron 15.0%
!! AGGAAATAAATTGAATTATT+TGG + chr4_1:38215473-38215492 Msa0546480:intron 15.0%
!! AATGTAAGAAAAAATAACAA+AGG - chr4_1:38216118-38216137 None:intergenic 15.0%
!! AATACCAGTATAAAAATAAT+TGG + chr4_1:38216206-38216225 Msa0546480:three_prime_UTR 15.0%
!! ATGACAATATTAGATTAGAT+AGG + chr4_1:38208808-38208827 Msa0546480:intron 20.0%
!! TGACAATATTAGATTAGATA+GGG + chr4_1:38208809-38208828 Msa0546480:intron 20.0%
!!! GTTTCTATTATAGTTTTTCT+AGG - chr4_1:38208961-38208980 None:intergenic 20.0%
!! TTGAATAAATATATGGCATA+TGG + chr4_1:38209009-38209028 Msa0546480:intron 20.0%
!! TACAACTAATTACCAAAAAA+TGG - chr4_1:38209616-38209635 None:intergenic 20.0%
!! ATACTTAAATATGAGTTAGT+GGG + chr4_1:38210132-38210151 Msa0546480:intron 20.0%
!!! ACAATATCATTACTTTTCAA+TGG - chr4_1:38210542-38210561 None:intergenic 20.0%
!!! ACAATTTTAGGTGAATTTAT+GGG + chr4_1:38210605-38210624 Msa0546480:intron 20.0%
!!! CTGTTATACAAATAATTTTG+TGG + chr4_1:38210961-38210980 Msa0546480:intron 20.0%
!! GTCAAAAACATATAGATAAA+AGG - chr4_1:38211293-38211312 None:intergenic 20.0%
!! TGAAATTCTAAATAAGTTTC+AGG + chr4_1:38211496-38211515 Msa0546480:CDS 20.0%
!!! AAATACAAATTCAAGTTGTT+CGG - chr4_1:38211828-38211847 None:intergenic 20.0%
!!! ATTATTTTTTCTCCATTTGT+AGG - chr4_1:38212094-38212113 None:intergenic 20.0%
!!! GTCTTTTCTTTTTTATTTTG+AGG + chr4_1:38213538-38213557 Msa0546480:intron 20.0%
!! TATTATCCAAAACATTTGAT+AGG + chr4_1:38214036-38214055 Msa0546480:intron 20.0%
!! AAAGATTATATGGAAAAGTA+AGG + chr4_1:38214260-38214279 Msa0546480:intron 20.0%
!! AAGATTATATGGAAAAGTAA+GGG + chr4_1:38214261-38214280 Msa0546480:intron 20.0%
!! ATGTGTTTGCATTTATTTAT+CGG + chr4_1:38214321-38214340 Msa0546480:intron 20.0%
!! ATATAACATACTCTTTAATG+TGG + chr4_1:38214425-38214444 Msa0546480:intron 20.0%
!! AAGTATAAGTAAGAAACTAT+TGG - chr4_1:38214727-38214746 None:intergenic 20.0%
!!! TTATAGTATGTCTGAAATAA+AGG - chr4_1:38214918-38214937 None:intergenic 20.0%
!! TAAGAAAAAATAACAAAGGT+AGG - chr4_1:38216114-38216133 None:intergenic 20.0%
!! TTGTCTTTGACAAAAAAAAA+AGG - chr4_1:38216146-38216165 None:intergenic 20.0%
! ACAGATTAAGATTCAGTATA+AGG + chr4_1:38208586-38208605 Msa0546480:CDS 25.0%
! AACATTTCATCTTATTGCAA+AGG + chr4_1:38209244-38209263 Msa0546480:CDS 25.0%
! CAATCTTTATCAATGAAAGT+TGG + chr4_1:38209343-38209362 Msa0546480:intron 25.0%
! AGTATAATCTAACACCTTAA+AGG - chr4_1:38209390-38209409 None:intergenic 25.0%
!! TTTGGTAATTAGTTGTAATG+TGG + chr4_1:38209619-38209638 Msa0546480:intron 25.0%
! TAATCTCAAACTCATATTTG+TGG - chr4_1:38209666-38209685 None:intergenic 25.0%
!!! TTGTAGTTTTATAATCTTGC+AGG + chr4_1:38209851-38209870 Msa0546480:intron 25.0%
!!! TTGTTTTGTGTTTGTGTTTA+GGG + chr4_1:38209946-38209965 Msa0546480:intron 25.0%
!! TGACATATGCACAAATTTTA+GGG - chr4_1:38209989-38210008 None:intergenic 25.0%
! TTGTCATGTGAAAAAATAGA+GGG - chr4_1:38210020-38210039 None:intergenic 25.0%
! TTTGTCATGTGAAAAAATAG+AGG - chr4_1:38210021-38210040 None:intergenic 25.0%
!! CATATTTAAGTATCGTAAGA+TGG - chr4_1:38210125-38210144 None:intergenic 25.0%
! GATACTTAAATATGAGTTAG+TGG + chr4_1:38210131-38210150 Msa0546480:intron 25.0%
!!! TTTTTTTTGCAAACACGTTT+TGG + chr4_1:38210272-38210291 Msa0546480:intron 25.0%
!!! TTTTTTTGCAAACACGTTTT+GGG + chr4_1:38210273-38210292 Msa0546480:intron 25.0%
!!! GATGTTGTGGATTTTTTTAT+GGG + chr4_1:38210324-38210343 Msa0546480:intron 25.0%
!!! ATGTTGTGGATTTTTTTATG+GGG + chr4_1:38210325-38210344 Msa0546480:intron 25.0%
!! ATACTAGAGATTTGAAATGA+AGG + chr4_1:38210437-38210456 Msa0546480:intron 25.0%
!! TACTAGAGATTTGAAATGAA+GGG + chr4_1:38210438-38210457 Msa0546480:intron 25.0%
!! TTTGAAATGAAGGGAAAAAA+AGG + chr4_1:38210447-38210466 Msa0546480:intron 25.0%
! ACAACAATAGCAGTAATATT+TGG + chr4_1:38210482-38210501 Msa0546480:intron 25.0%
! ATAACAGTGTTAAGTCAAAA+AGG + chr4_1:38210572-38210591 Msa0546480:intron 25.0%
! TAACAGTGTTAAGTCAAAAA+GGG + chr4_1:38210573-38210592 Msa0546480:intron 25.0%
!!! GACAATTTTAGGTGAATTTA+TGG + chr4_1:38210604-38210623 Msa0546480:intron 25.0%
! GTGTCTATTATAAAACTAGA+GGG + chr4_1:38210634-38210653 Msa0546480:intron 25.0%
! TGTCTATTATAAAACTAGAG+GGG + chr4_1:38210635-38210654 Msa0546480:intron 25.0%
! TCTTATTAGATAAGAGAAGA+TGG + chr4_1:38210745-38210764 Msa0546480:intron 25.0%
! ACTTCACTATGTTAATTACT+TGG + chr4_1:38210988-38211007 Msa0546480:intron 25.0%
! AATTAACTTACCTCTTCAAA+AGG - chr4_1:38211132-38211151 None:intergenic 25.0%
!!! TTTTATTTAAGTAGGGTGAA+TGG + chr4_1:38211150-38211169 Msa0546480:intron 25.0%
!! CATAAGCATTATGTTTCTAA+TGG - chr4_1:38211592-38211611 None:intergenic 25.0%
! AAAGCTCTATTCTAATTGAA+AGG - chr4_1:38211883-38211902 None:intergenic 25.0%
! GTTTCGACAAACTATATATA+AGG + chr4_1:38212163-38212182 Msa0546480:intron 25.0%
! TTTAGAAATCAATCGTAAAG+AGG + chr4_1:38212189-38212208 Msa0546480:intron 25.0%
! TTTGGGAGAAATGTATATTA+AGG + chr4_1:38212392-38212411 Msa0546480:intron 25.0%
! TTGGGAGAAATGTATATTAA+GGG + chr4_1:38212393-38212412 Msa0546480:intron 25.0%
! AAATGTATATTAAGGGTGAT+CGG + chr4_1:38212400-38212419 Msa0546480:intron 25.0%
!! GATATTAGAGTTTCAGATTT+TGG + chr4_1:38212473-38212492 Msa0546480:intron 25.0%
! TTTAGTCCTTACGATTTAAA+GGG + chr4_1:38212573-38212592 Msa0546480:intron 25.0%
! TAATCAGTAGTCCTATAATT+AGG - chr4_1:38212687-38212706 None:intergenic 25.0%
! TCAAACACAATATCAGAAAT+TGG - chr4_1:38213026-38213045 None:intergenic 25.0%
!!! TTTGATTTGTTGTACCTTAA+TGG + chr4_1:38213157-38213176 Msa0546480:CDS 25.0%
! AAAGAGGAATTAAAGTAGAT+AGG + chr4_1:38213404-38213423 Msa0546480:intron 25.0%
!!! ATAGTATAAATGAAGCATTG+AGG + chr4_1:38213463-38213482 Msa0546480:intron 25.0%
! ATTATTGTATATCATGCATC+TGG + chr4_1:38213609-38213628 Msa0546480:intron 25.0%
! AAAAAAAAACCTTGCATCAA+TGG - chr4_1:38213800-38213819 None:intergenic 25.0%
! GAAACTGAAGAAAGATTATA+TGG + chr4_1:38214250-38214269 Msa0546480:CDS 25.0%
! AATTAAATCTGAATATGGCT+AGG + chr4_1:38214487-38214506 Msa0546480:intron 25.0%
! AATTTATGCATTTAACTCAG+TGG + chr4_1:38214535-38214554 Msa0546480:intron 25.0%
!! TTTCAAAGCATTTGTAAGAT+AGG + chr4_1:38214641-38214660 Msa0546480:CDS 25.0%
! CTTACTTATACTTCATGTTA+TGG + chr4_1:38214734-38214753 Msa0546480:intron 25.0%
! TTTCAGACATACTATAAATG+TGG + chr4_1:38214921-38214940 Msa0546480:intron 25.0%
!! TGAGCATAATGCAATTTTAT+TGG - chr4_1:38215048-38215067 None:intergenic 25.0%
!!! TAGCTTTTAACTTCTATTGA+TGG + chr4_1:38215279-38215298 Msa0546480:intron 25.0%
! AACCTACATTGAAACATTAT+CGG - chr4_1:38215912-38215931 None:intergenic 25.0%
!!! TTTTTCTTTCACTTTTCTCA+CGG - chr4_1:38216183-38216202 None:intergenic 25.0%
!!! ACTGCCAATTATTTTTATAC+TGG - chr4_1:38216213-38216232 None:intergenic 25.0%
!!! GTTGTTATTAGGGTTTTGAA+CGG - chr4_1:38208135-38208154 None:intergenic 30.0%
TTCTTCATGAACAGTTTCTT+CGG - chr4_1:38208186-38208205 None:intergenic 30.0%
! TCGAAGATGATGATGTATTT+CGG - chr4_1:38208223-38208242 None:intergenic 30.0%
AAATACATCATCATCTTCGA+AGG + chr4_1:38208223-38208242 Msa0546480:CDS 30.0%
AATACATCATCATCTTCGAA+GGG + chr4_1:38208224-38208243 Msa0546480:CDS 30.0%
! TTGATGTTATTGTTGTTGCT+AGG + chr4_1:38208628-38208647 Msa0546480:intron 30.0%
AAGTTGAAGGGAAAATTTAC+AGG + chr4_1:38208665-38208684 Msa0546480:intron 30.0%
AATTTACAGGACATGTTGTA+TGG + chr4_1:38208678-38208697 Msa0546480:intron 30.0%
ATTTACAGGACATGTTGTAT+GGG + chr4_1:38208679-38208698 Msa0546480:intron 30.0%
TATTAGATTAGATAGGGAGT+TGG + chr4_1:38208815-38208834 Msa0546480:intron 30.0%
ATTAGATTAGATAGGGAGTT+GGG + chr4_1:38208816-38208835 Msa0546480:intron 30.0%
CACCTAGAAATTAGAAAAGA+TGG + chr4_1:38208843-38208862 Msa0546480:intron 30.0%
! CACCATCTTTTCTAATTTCT+AGG - chr4_1:38208848-38208867 None:intergenic 30.0%
CTAGAAATTAGAAAAGATGG+TGG + chr4_1:38208846-38208865 Msa0546480:intron 30.0%
AGTCAAATCATTAGAAACAG+AGG + chr4_1:38208931-38208950 Msa0546480:intron 30.0%
! AGGTACTTTACTGTCAATTT+TGG + chr4_1:38209264-38209283 Msa0546480:intron 30.0%
!!! AAAGTTGGTTTTTCTATGCA+TGG + chr4_1:38209358-38209377 Msa0546480:intron 30.0%
!!! AAGTTGGTTTTTCTATGCAT+GGG + chr4_1:38209359-38209378 Msa0546480:intron 30.0%
ATGTTTCAGTCAATTTGTGA+AGG + chr4_1:38209465-38209484 Msa0546480:intron 30.0%
! ATTATCCGATTTTGAACACT+TGG + chr4_1:38209682-38209701 Msa0546480:intron 30.0%
! ATGTCTTTTGCTAAAAGCAA+AGG + chr4_1:38209877-38209896 Msa0546480:intron 30.0%
!!! TTGCTGAATGTTAGTTTTTG+TGG + chr4_1:38209913-38209932 Msa0546480:intron 30.0%
!! GTTGTTTTGTGTTTGTGTTT+AGG + chr4_1:38209945-38209964 Msa0546480:intron 30.0%
! GACATATGCACAAATTTTAG+GGG - chr4_1:38209988-38210007 None:intergenic 30.0%
! GTGACATATGCACAAATTTT+AGG - chr4_1:38209990-38210009 None:intergenic 30.0%
TGTCATGTGAAAAAATAGAG+GGG - chr4_1:38210019-38210038 None:intergenic 30.0%
!!! TTTTTTGAATTGAACAGACC+TGG - chr4_1:38210068-38210087 None:intergenic 30.0%
!!! TATGAGTTAGTGGGTTTTTT+TGG + chr4_1:38210141-38210160 Msa0546480:intron 30.0%
!!! AACACGTTTTGGGATAAAAA+TGG + chr4_1:38210283-38210302 Msa0546480:intron 30.0%
!!! ACACGTTTTGGGATAAAAAT+GGG + chr4_1:38210284-38210303 Msa0546480:intron 30.0%
ATGGGGAAAACCAAATTAAT+AGG + chr4_1:38210302-38210321 Msa0546480:intron 30.0%
ACCAAATTAATAGGATGTTG+TGG + chr4_1:38210311-38210330 Msa0546480:intron 30.0%
TCCACAACATCCTATTAATT+TGG - chr4_1:38210315-38210334 None:intergenic 30.0%
!!! GGATGTTGTGGATTTTTTTA+TGG + chr4_1:38210323-38210342 Msa0546480:intron 30.0%
ACAATAGCAGTAATATTTGG+TGG + chr4_1:38210485-38210504 Msa0546480:intron 30.0%
!!! GTAATATTTGGTGGTTTTAG+TGG + chr4_1:38210494-38210513 Msa0546480:intron 30.0%
!! ATTTTAGGTGAATTTATGGG+AGG + chr4_1:38210608-38210627 Msa0546480:intron 30.0%
GGTGTCTATTATAAAACTAG+AGG + chr4_1:38210633-38210652 Msa0546480:intron 30.0%
GTCTATTATAAAACTAGAGG+GGG + chr4_1:38210636-38210655 Msa0546480:intron 30.0%
! TGTTATTTAAAGAGACCTCA+GGG + chr4_1:38210665-38210684 Msa0546480:intron 30.0%
! ATAAGAGAAGATGGATTTGT+TGG + chr4_1:38210754-38210773 Msa0546480:intron 30.0%
!! AAGATGGATTTGTTGGAATT+TGG + chr4_1:38210761-38210780 Msa0546480:intron 30.0%
CCTGTGAACATTTATAGTAA+GGG - chr4_1:38210828-38210847 None:intergenic 30.0%
TCCTGTGAACATTTATAGTA+AGG - chr4_1:38210829-38210848 None:intergenic 30.0%
TATAAATGTTCACAGGAATC+TGG + chr4_1:38210832-38210851 Msa0546480:intron 30.0%
!! AGCAAACGGATTATATATAG+AGG - chr4_1:38210925-38210944 None:intergenic 30.0%
! ATATATAATCCGTTTGCTAC+AGG + chr4_1:38210927-38210946 Msa0546480:CDS 30.0%
!! GTGCTTTGTTTAAAACCTTT+CGG + chr4_1:38211179-38211198 Msa0546480:intron 30.0%
!! TGCTTTGTTTAAAACCTTTC+GGG + chr4_1:38211180-38211199 Msa0546480:intron 30.0%
!! TTTTTGTTTCATTTTGCACC+AGG + chr4_1:38211313-38211332 Msa0546480:intron 30.0%
!! TTTTAACAATTTTAGCAGCC+TGG - chr4_1:38211334-38211353 None:intergenic 30.0%
! GACACAATTTTGTCATAATC+AGG - chr4_1:38211374-38211393 None:intergenic 30.0%
GGAGTAAAATCACATTTCTT+TGG - chr4_1:38211428-38211447 None:intergenic 30.0%
! AAGAAATGTGATTTTACTCC+TGG + chr4_1:38211428-38211447 Msa0546480:CDS 30.0%
ATTGAGACAGATACATTTCT+TGG + chr4_1:38211642-38211661 Msa0546480:intron 30.0%
TTTACAGTAGAAATGCTGAA+CGG + chr4_1:38211683-38211702 Msa0546480:CDS 30.0%
GTTCGGAAAATGTTCATAAT+TGG - chr4_1:38211811-38211830 None:intergenic 30.0%
GATTTAATGATCCAATCCAA+CGG - chr4_1:38211959-38211978 None:intergenic 30.0%
!! TTTCAGATTTTGGAGAAACT+TGG + chr4_1:38212483-38212502 Msa0546480:intron 30.0%
TTGTGACAGACAGATAATAT+AGG + chr4_1:38212514-38212533 Msa0546480:intron 30.0%
CTTTAGTCCTTACGATTTAA+AGG + chr4_1:38212572-38212591 Msa0546480:intron 30.0%
AGATTCCGAATCCTAATTAT+AGG + chr4_1:38212673-38212692 Msa0546480:intron 30.0%
GTAGTCCTATAATTAGGATT+CGG - chr4_1:38212681-38212700 None:intergenic 30.0%
! AAATGCTATTTGAAAGCAAC+TGG - chr4_1:38212726-38212745 None:intergenic 30.0%
TAAAACAACACAGACATTAG+TGG - chr4_1:38212981-38213000 None:intergenic 30.0%
!!! CTGTGTTGTTTTACCTTTAT+TGG + chr4_1:38212988-38213007 Msa0546480:intron 30.0%
ATTAGCAACGCAAAGATAAA+AGG - chr4_1:38213229-38213248 None:intergenic 30.0%
! GGTAGAAGTTTAGAATAAAG+AGG + chr4_1:38213388-38213407 Msa0546480:intron 30.0%
GAATTAAAGTAGATAGGTCA+AGG + chr4_1:38213410-38213429 Msa0546480:intron 30.0%
CAAGAACTTTATTATCCCAT+GGG + chr4_1:38213511-38213530 Msa0546480:intron 30.0%
!!! TTTTTTATTTTGAGGGAAGC+TGG + chr4_1:38213546-38213565 Msa0546480:intron 30.0%
CAGTAGAAAACAGATTCAAT+CGG - chr4_1:38213572-38213591 None:intergenic 30.0%
AACAACATCAAATGATGTTG+AGG + chr4_1:38213750-38213769 Msa0546480:CDS 30.0%
TTATTTCGGCTGTAGTTATA+TGG + chr4_1:38213890-38213909 Msa0546480:intron 30.0%
TATTTCGGCTGTAGTTATAT+GGG + chr4_1:38213891-38213910 Msa0546480:intron 30.0%
! ACACTTCCTATCAAATGTTT+TGG - chr4_1:38214045-38214064 None:intergenic 30.0%
ATTGCAAGAGAAACCAAATT+TGG - chr4_1:38214101-38214120 None:intergenic 30.0%
CAACTGAAAATCAAGAGATA+AGG - chr4_1:38214158-38214177 None:intergenic 30.0%
ACTTATACTTCATGTTATGG+TGG + chr4_1:38214737-38214756 Msa0546480:intron 30.0%
CTTATACTTCATGTTATGGT+GGG + chr4_1:38214738-38214757 Msa0546480:intron 30.0%
AATCAATCAATCCTGATGTA+TGG + chr4_1:38214946-38214965 Msa0546480:CDS 30.0%
TATCTTCTTTCATTTAGGTG+TGG + chr4_1:38215101-38215120 Msa0546480:intron 30.0%
ATCTTCTTTCATTTAGGTGT+GGG + chr4_1:38215102-38215121 Msa0546480:intron 30.0%
TTAGTCGGATAATGAAAGAT+TGG - chr4_1:38215419-38215438 None:intergenic 30.0%
TCCTATCATATACAGTTAGT+CGG - chr4_1:38215434-38215453 None:intergenic 30.0%
TTCTTTAACCACTTTCTTTC+AGG + chr4_1:38215499-38215518 Msa0546480:intron 30.0%
ATGACAATGAAGATGATTGA+GGG + chr4_1:38215570-38215589 Msa0546480:CDS 30.0%
TTTAACAGCATAGAAAAGCA+AGG - chr4_1:38215604-38215623 None:intergenic 30.0%
CATCTTAACATTTACTCACA+TGG - chr4_1:38215654-38215673 None:intergenic 30.0%
ACTTCTTATCCAACATGATT+AGG + chr4_1:38215710-38215729 Msa0546480:three_prime_UTR 30.0%
ATCCAACATGATTAGGTATT+TGG + chr4_1:38215717-38215736 Msa0546480:three_prime_UTR 30.0%
! AAGCATGTCATTTGGAAATT+GGG + chr4_1:38215798-38215817 Msa0546480:three_prime_UTR 30.0%
!!! AAATTGGGTCTTTTTTCAGA+AGG + chr4_1:38215813-38215832 Msa0546480:three_prime_UTR 30.0%
!!! AATTGGGTCTTTTTTCAGAA+GGG + chr4_1:38215814-38215833 Msa0546480:three_prime_UTR 30.0%
CTTGTGTATGTATTAGTGTT+TGG + chr4_1:38215857-38215876 Msa0546480:three_prime_UTR 30.0%
ACCTACATTGAAACATTATC+GGG - chr4_1:38215911-38215930 None:intergenic 30.0%
GAGTGACGAAGAAAATTTGA+CGG - chr4_1:38207916-38207935 None:intergenic 35.0%
!!! GTAGGGGATTTTCGTTTTTT+GGG - chr4_1:38208083-38208102 None:intergenic 35.0%
!! AGTAGGGGATTTTCGTTTTT+TGG - chr4_1:38208084-38208103 None:intergenic 35.0%
!!! GGGTTTTGAGGTTGTTATTA+GGG - chr4_1:38208145-38208164 None:intergenic 35.0%
!!! AGGGTTTTGAGGTTGTTATT+AGG - chr4_1:38208146-38208165 None:intergenic 35.0%
!! AGTTTCTTCGGGTTTTTGAA+CGG - chr4_1:38208174-38208193 None:intergenic 35.0%
TCTTCATGAACAGTTTCTTC+GGG - chr4_1:38208185-38208204 None:intergenic 35.0%
GATATGATTAACGAAGAGAG+TGG + chr4_1:38208374-38208393 Msa0546480:CDS 35.0%
TTCGACGACAAATAAACAAC+CGG - chr4_1:38208473-38208492 None:intergenic 35.0%
! TGGTGATGCTTCGATTATTA+AGG + chr4_1:38208532-38208551 Msa0546480:CDS 35.0%
CTGAATCTTAATCTGTTGCT+CGG - chr4_1:38208582-38208601 None:intergenic 35.0%
!! TAAAGTACGACTCAAGTTGA+AGG + chr4_1:38208652-38208671 Msa0546480:intron 35.0%
!! AAAGTACGACTCAAGTTGAA+GGG + chr4_1:38208653-38208672 Msa0546480:intron 35.0%
AGATAAATTAAGCGTAGCAG+AGG + chr4_1:38208734-38208753 Msa0546480:intron 35.0%
TTAGATTAGATAGGGAGTTG+GGG + chr4_1:38208817-38208836 Msa0546480:intron 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + chr4_1:38208854-38208873 Msa0546480:intron 35.0%
!!! ACAGTTGTTTTGTTGTTGAC+AGG + chr4_1:38209127-38209146 Msa0546480:intron 35.0%
!!! TTTTGTTGTTGACAGGACAA+AGG + chr4_1:38209134-38209153 Msa0546480:intron 35.0%
! TTCCTAATAGTCAAAGCATC+AGG - chr4_1:38209215-38209234 None:intergenic 35.0%
TGATGCTTTGACTATTAGGA+AGG + chr4_1:38209214-38209233 Msa0546480:CDS 35.0%
!!! TGTCAATTTTGGAGCTTAAG+TGG + chr4_1:38209275-38209294 Msa0546480:intron 35.0%
!!! GTCAATTTTGGAGCTTAAGT+GGG + chr4_1:38209276-38209295 Msa0546480:intron 35.0%
!! GGGTTTGTTGTTTGAGATAT+TGG + chr4_1:38209296-38209315 Msa0546480:intron 35.0%
ATGCATGGGATAAACCTTTA+AGG + chr4_1:38209373-38209392 Msa0546480:intron 35.0%
TTCAGTCAATTTGTGAAGGA+TGG + chr4_1:38209469-38209488 Msa0546480:intron 35.0%
! GGCGTTTTATGCTGAATTTT+AGG + chr4_1:38209501-38209520 Msa0546480:intron 35.0%
!!! TTGAAGCACATGCCATTTTT+TGG + chr4_1:38209601-38209620 Msa0546480:intron 35.0%
ACAGTCCAAGTGTTCAAAAT+CGG - chr4_1:38209690-38209709 None:intergenic 35.0%
TCAACATAGCGAACTGAATA+TGG - chr4_1:38209755-38209774 None:intergenic 35.0%
AGCTCTCATACACATTACAT+TGG - chr4_1:38209824-38209843 None:intergenic 35.0%
!! ATATGCACAAATTTTAGGGG+AGG - chr4_1:38209985-38210004 None:intergenic 35.0%
GTCATGTGAAAAAATAGAGG+GGG - chr4_1:38210018-38210037 None:intergenic 35.0%
!!! CACGTTTTGGGATAAAAATG+GGG + chr4_1:38210285-38210304 Msa0546480:intron 35.0%
ATGATTCACATGGGAATAAG+CGG + chr4_1:38210355-38210374 Msa0546480:intron 35.0%
ACAAAAACATTGCAGAGTGT+AGG - chr4_1:38210381-38210400 None:intergenic 35.0%
!! TACACTCTGCAATGTTTTTG+TGG + chr4_1:38210380-38210399 Msa0546480:intron 35.0%
!! ACACTCTGCAATGTTTTTGT+GGG + chr4_1:38210381-38210400 Msa0546480:intron 35.0%
!!! ATATTTGGTGGTTTTAGTGG+AGG + chr4_1:38210497-38210516 Msa0546480:intron 35.0%
! ACTTTTCAATGGATGAGATG+AGG - chr4_1:38210531-38210550 None:intergenic 35.0%
!! GTGTTATTTAAAGAGACCTC+AGG + chr4_1:38210664-38210683 Msa0546480:intron 35.0%
GTTATTTAAAGAGACCTCAG+GGG + chr4_1:38210666-38210685 Msa0546480:intron 35.0%
ATGTTGCAGGTTAATATGCA+TGG + chr4_1:38210716-38210735 Msa0546480:intron 35.0%
CCCTTACTATAAATGTTCAC+AGG + chr4_1:38210825-38210844 Msa0546480:intron 35.0%
CAACAAGAAGTGACTTTATG+TGG - chr4_1:38210885-38210904 None:intergenic 35.0%
AAATTGCAACCTGTAGCAAA+CGG - chr4_1:38210939-38210958 None:intergenic 35.0%
TTCCAGACAAAATTGCGAAT+TGG + chr4_1:38211018-38211037 Msa0546480:intron 35.0%
! ATCCAATTCGCAATTTTGTC+TGG - chr4_1:38211023-38211042 None:intergenic 35.0%
TCAAAAGGAGACTGAATTTC+AGG - chr4_1:38211117-38211136 None:intergenic 35.0%
!! AATTCAGTCTCCTTTTGAAG+AGG + chr4_1:38211119-38211138 Msa0546480:CDS 35.0%
GTGACAATGCATTATGATGT+TGG + chr4_1:38211249-38211268 Msa0546480:intron 35.0%
TAGAATTTCAGATACACCCT+TGG - chr4_1:38211486-38211505 None:intergenic 35.0%
ACGTGTGAATACAAATACGA+TGG + chr4_1:38211530-38211549 Msa0546480:CDS 35.0%
CAGATACATTTCTTGGAGAA+TGG + chr4_1:38211649-38211668 Msa0546480:intron 35.0%
!! TAATGAGCTTTGCTTTAAGG+AGG - chr4_1:38212291-38212310 None:intergenic 35.0%
GCTTAATGAGCTTTGCTTTA+AGG - chr4_1:38212294-38212313 None:intergenic 35.0%
AAGTCAACTCAGACTAAAAG+AGG + chr4_1:38212357-38212376 Msa0546480:intron 35.0%
AGTCAACTCAGACTAAAAGA+GGG + chr4_1:38212358-38212377 Msa0546480:intron 35.0%
GACAGACAGATAATATAGGA+CGG + chr4_1:38212518-38212537 Msa0546480:intron 35.0%
TTTCCTCCCTTTAAATCGTA+AGG - chr4_1:38212582-38212601 None:intergenic 35.0%
!! ATTTGTTGTGAGTGACATGT+TGG + chr4_1:38212632-38212651 Msa0546480:intron 35.0%
ATGCAACAAGTTCACAATCA+AGG - chr4_1:38212819-38212838 None:intergenic 35.0%
TTTGCCACACGTAAAACTAA+AGG - chr4_1:38212895-38212914 None:intergenic 35.0%
GAAAGCTGAATCACCAATAA+AGG - chr4_1:38213004-38213023 None:intergenic 35.0%
TTGTAACCTTACATCTTGAC+AGG + chr4_1:38213066-38213085 Msa0546480:intron 35.0%
! ACTCAAAGCTACATTTTTGC+GGG - chr4_1:38213107-38213126 None:intergenic 35.0%
! CACTCAAAGCTACATTTTTG+CGG - chr4_1:38213108-38213127 None:intergenic 35.0%
!! TGTAGCTTTGAGTGACATAA+AGG + chr4_1:38213114-38213133 Msa0546480:CDS 35.0%
AAACTTGAAAATCCGTAGAG+AGG + chr4_1:38213198-38213217 Msa0546480:CDS 35.0%
!! TAAAAGGTGTTACCTCTCTA+CGG - chr4_1:38213213-38213232 None:intergenic 35.0%
AGTTGAATCCATGATAGAGT+TGG + chr4_1:38213277-38213296 Msa0546480:intron 35.0%
ACTGTCCACGTAAATATAAG+AGG + chr4_1:38213355-38213374 Msa0546480:intron 35.0%
AATATAAGAGGAGCTGTGTT+AGG + chr4_1:38213367-38213386 Msa0546480:intron 35.0%
GGGATAATAAAGTTCTTGCT+TGG - chr4_1:38213509-38213528 None:intergenic 35.0%
GCAAGAACTTTATTATCCCA+TGG + chr4_1:38213510-38213529 Msa0546480:intron 35.0%
AAAGAAAAGACTCTTCCCAT+GGG - chr4_1:38213529-38213548 None:intergenic 35.0%
AAAAGAAAAGACTCTTCCCA+TGG - chr4_1:38213530-38213549 None:intergenic 35.0%
TAGAGATGCTGCAGAAAATT+AGG - chr4_1:38213685-38213704 None:intergenic 35.0%
ATTTCGGCTGTAGTTATATG+GGG + chr4_1:38213892-38213911 Msa0546480:intron 35.0%
!! AATGGTGCCACATAACTTAA+GGG - chr4_1:38213967-38213986 None:intergenic 35.0%
!! AAATGGTGCCACATAACTTA+AGG - chr4_1:38213968-38213987 None:intergenic 35.0%
! TCTCTTGATTTTCAGTTGTG+AGG + chr4_1:38214160-38214179 Msa0546480:intron 35.0%
! CTCTTGATTTTCAGTTGTGA+GGG + chr4_1:38214161-38214180 Msa0546480:intron 35.0%
! TCACTAGATTTGGTACCTAT+TGG + chr4_1:38214367-38214386 Msa0546480:CDS 35.0%
TTAGTGACATGATGTCTTGT+AGG + chr4_1:38214569-38214588 Msa0546480:intron 35.0%
TAAAGTGATTCCCAAACCAA+AGG + chr4_1:38214816-38214835 Msa0546480:CDS 35.0%
TACTAAGCAGAACTCAGAAA+TGG - chr4_1:38214870-38214889 None:intergenic 35.0%
TCCGACTAACTGTATATGAT+AGG + chr4_1:38215430-38215449 Msa0546480:intron 35.0%
TAGGAGATTGAGAAAGAGTA+AGG + chr4_1:38215449-38215468 Msa0546480:intron 35.0%
ACACAATCACAATGACAAAC+AGG + chr4_1:38215547-38215566 Msa0546480:CDS 35.0%
GATGACAATGAAGATGATTG+AGG + chr4_1:38215569-38215588 Msa0546480:CDS 35.0%
AAATCCTTTACCTTCAAGCT+AGG + chr4_1:38215675-38215694 Msa0546480:three_prime_UTR 35.0%
TGCCAAATACCTAATCATGT+TGG - chr4_1:38215722-38215741 None:intergenic 35.0%
! CCATTAGCTTAATTACACCA+TGG - chr4_1:38215749-38215768 None:intergenic 35.0%
CCATGGTGTAATTAAGCTAA+TGG + chr4_1:38215746-38215765 Msa0546480:three_prime_UTR 35.0%
TGGTGTAATTAAGCTAATGG+AGG + chr4_1:38215749-38215768 Msa0546480:three_prime_UTR 35.0%
ATGCGCAAATACCTATTGTT+TGG - chr4_1:38215777-38215796 None:intergenic 35.0%
! CAAGCATGTCATTTGGAAAT+TGG + chr4_1:38215797-38215816 Msa0546480:three_prime_UTR 35.0%
ATACATACACAAGCAATACC+AGG - chr4_1:38215850-38215869 None:intergenic 35.0%
TCCCGATAATGTTTCAATGT+AGG + chr4_1:38215907-38215926 Msa0546480:three_prime_UTR 35.0%
GAGGAACAAAACTAACTGTT+TGG - chr4_1:38215996-38216015 None:intergenic 35.0%
TAAGTGCAGTATCATGATAG+AGG - chr4_1:38216015-38216034 None:intergenic 35.0%
CTATCATGATACTGCACTTA+AGG + chr4_1:38216015-38216034 Msa0546480:three_prime_UTR 35.0%
! TTACATTTTGTGCATGCTCA+TGG + chr4_1:38216058-38216077 Msa0546480:three_prime_UTR 35.0%
CAAAGGTAGGATCATGATAA+AGG - chr4_1:38216101-38216120 None:intergenic 35.0%
! TGCTAACATCCACTCTGAAA+TGG - chr4_1:38207847-38207866 None:intergenic 40.0%
!! TTTTTGGGAGATGATGAAGG+TGG - chr4_1:38208068-38208087 None:intergenic 40.0%
!!! CGTTTTTTGGGAGATGATGA+AGG - chr4_1:38208071-38208090 None:intergenic 40.0%
!!! TAGGGTTTTGAACGGTATCT+GGG - chr4_1:38208127-38208146 None:intergenic 40.0%
!!! TTAGGGTTTTGAACGGTATC+TGG - chr4_1:38208128-38208147 None:intergenic 40.0%
! GGGTTTTTGAACGGTTTCTA+GGG - chr4_1:38208165-38208184 None:intergenic 40.0%
GATGTATTTCGGATCTTGCT+CGG - chr4_1:38208212-38208231 None:intergenic 40.0%
AGTCGCTGAATTGAAGGAAA+AGG + chr4_1:38208250-38208269 Msa0546480:CDS 40.0%
! TCCGTTTCTGTTTCTCTGTT+TGG + chr4_1:38208346-38208365 Msa0546480:CDS 40.0%
GCCAAACAGAGAAACAGAAA+CGG - chr4_1:38208350-38208369 None:intergenic 40.0%
AACTGTGATACATGCTACAC+CGG + chr4_1:38208436-38208455 Msa0546480:CDS 40.0%
!! CTAGTCTTACAACACATCGA+AGG - chr4_1:38208771-38208790 None:intergenic 40.0%
GTTGTAAGACTAGACGAGAT+AGG + chr4_1:38208778-38208797 Msa0546480:intron 40.0%
GCATCATAGACTGAGAAGAA+CGG - chr4_1:38209187-38209206 None:intergenic 40.0%
GTTCTTCTCAGTCTATGATG+CGG + chr4_1:38209186-38209205 Msa0546480:CDS 40.0%
AGCCTGATGCTTTGACTATT+AGG + chr4_1:38209210-38209229 Msa0546480:CDS 40.0%
CTATCAGTGTAGCCAAATGT+CGG + chr4_1:38209408-38209427 Msa0546480:intron 40.0%
AGTCAATTTGTGAAGGATGG+TGG + chr4_1:38209472-38209491 Msa0546480:intron 40.0%
! GAATTTTAGGCTTTCTGCCA+TGG + chr4_1:38209514-38209533 Msa0546480:intron 40.0%
CCAGTGTTATCAATGAAGGA+TGG - chr4_1:38209544-38209563 None:intergenic 40.0%
! CCATCCTTCATTGATAACAC+TGG + chr4_1:38209541-38209560 Msa0546480:intron 40.0%
GTAGCCAGTGTTATCAATGA+AGG - chr4_1:38209548-38209567 None:intergenic 40.0%
!! GATAACACTGGCTACACTTT+TGG + chr4_1:38209553-38209572 Msa0546480:intron 40.0%
!!! ACTGGCTACACTTTTGGAAT+TGG + chr4_1:38209559-38209578 Msa0546480:intron 40.0%
ATTAGTTGTAATGTGGCCAC+TGG + chr4_1:38209626-38209645 Msa0546480:intron 40.0%
!!! GGATTCGATATTTTGACCAG+TGG - chr4_1:38209645-38209664 None:intergenic 40.0%
TTGAATTGAACAGACCTGGA+CGG - chr4_1:38210064-38210083 None:intergenic 40.0%
AGTATCGTAAGATGGTTCCA+TGG - chr4_1:38210117-38210136 None:intergenic 40.0%
AAGAAACACACCTGTAGGAA+CGG - chr4_1:38210180-38210199 None:intergenic 40.0%
ATCACAAGAAACACACCTGT+AGG - chr4_1:38210185-38210204 None:intergenic 40.0%
GCATCAACTTGTGATAGGAA+CGG - chr4_1:38210232-38210251 None:intergenic 40.0%
GATACGCATCAACTTGTGAT+AGG - chr4_1:38210237-38210256 None:intergenic 40.0%
GGTGTGTGTATGATTCACAT+GGG + chr4_1:38210346-38210365 Msa0546480:intron 40.0%
!! CACTCTGCAATGTTTTTGTG+GGG + chr4_1:38210382-38210401 Msa0546480:intron 40.0%
CAGTGTTAAGTCAAAAAGGG+AGG + chr4_1:38210576-38210595 Msa0546480:intron 40.0%
TAGGTGAATTTATGGGAGGT+TGG + chr4_1:38210612-38210631 Msa0546480:intron 40.0%
ATCGCTTGTGTTTATGTTGC+AGG + chr4_1:38210703-38210722 Msa0546480:intron 40.0%
AAAGGAGACTGAATTTCAGG+AGG - chr4_1:38211114-38211133 None:intergenic 40.0%
! TCAGCTCAATAAGTTGGAGA+CGG + chr4_1:38211207-38211226 Msa0546480:intron 40.0%
AATTGTGTCTGCACTCCTTA+CGG + chr4_1:38211385-38211404 Msa0546480:CDS 40.0%
! TGATTTTACTCCTGGTGTTC+CGG + chr4_1:38211436-38211455 Msa0546480:CDS 40.0%
!!! TTGGTTGCTTTTGACAGCAT+AGG - chr4_1:38211467-38211486 None:intergenic 40.0%
TATGCTGTCAAAAGCAACCA+AGG + chr4_1:38211466-38211485 Msa0546480:CDS 40.0%
ATGCTGTCAAAAGCAACCAA+GGG + chr4_1:38211467-38211486 Msa0546480:CDS 40.0%
ATGTTGTTGCTGCAGTTTCA+AGG + chr4_1:38211725-38211744 Msa0546480:CDS 40.0%
GTGGAAAACAAGCTTATGCA+TGG - chr4_1:38211937-38211956 None:intergenic 40.0%
!! ATAAGCTTGTTTTCCACCGT+TGG + chr4_1:38211940-38211959 Msa0546480:intron 40.0%
TTAATGATCCAATCCAACGG+TGG - chr4_1:38211956-38211975 None:intergenic 40.0%
!! CACAAGGTTGTTTCTACCAA+TGG - chr4_1:38212030-38212049 None:intergenic 40.0%
GGTAGAAACAACCTTGTGTA+TGG + chr4_1:38212032-38212051 Msa0546480:intron 40.0%
TATGTCTTGCACCATACACA+AGG - chr4_1:38212046-38212065 None:intergenic 40.0%
TCATAGACTTGGCCTACAAA+TGG + chr4_1:38212079-38212098 Msa0546480:intron 40.0%
!! ATTTTGGAGAAACTTGGCAG+TGG + chr4_1:38212489-38212508 Msa0546480:intron 40.0%
AGTCCTTACGATTTAAAGGG+AGG + chr4_1:38212576-38212595 Msa0546480:intron 40.0%
ATGAGATTACCTGGAAAGGA+AGG - chr4_1:38212864-38212883 None:intergenic 40.0%
GCAAATGAGATTACCTGGAA+AGG - chr4_1:38212868-38212887 None:intergenic 40.0%
TTCCAGGTAATCTCATTTGC+CGG + chr4_1:38212868-38212887 Msa0546480:intron 40.0%
CACACGTAAAACTAAAGGAC+CGG - chr4_1:38212890-38212909 None:intergenic 40.0%
ACACAGACATTAGTGGCAAA+AGG - chr4_1:38212974-38212993 None:intergenic 40.0%
TAAGCACCTGTCAAGATGTA+AGG - chr4_1:38213075-38213094 None:intergenic 40.0%
!!! AGTTTTCCTGAAGAAGTGCT+TGG - chr4_1:38213183-38213202 None:intergenic 40.0%
TGAATCCATGATAGAGTTGG+CGG + chr4_1:38213280-38213299 Msa0546480:intron 40.0%
AGAATGCAGAAGCTTCATCA+AGG - chr4_1:38213317-38213336 None:intergenic 40.0%
CAGCTCCTCTTATATTTACG+TGG - chr4_1:38213363-38213382 None:intergenic 40.0%
AGGTCAAGGCAGTTAGTTAA+AGG + chr4_1:38213424-38213443 Msa0546480:intron 40.0%
! TATCATGCATCTGGAATGAG+CGG + chr4_1:38213618-38213637 Msa0546480:intron 40.0%
TTGACAAAGCCATTGATGCA+AGG + chr4_1:38213788-38213807 Msa0546480:CDS 40.0%
TTTCGGCTGTAGTTATATGG+GGG + chr4_1:38213893-38213912 Msa0546480:intron 40.0%
ACTCACAGCTCTTCCAAATT+TGG + chr4_1:38214085-38214104 Msa0546480:intron 40.0%
CAGCACAAAAAAATCTCCCA+AGG - chr4_1:38214513-38214532 None:intergenic 40.0%
TGATGTCTTGTAGGTGTGTA+TGG + chr4_1:38214578-38214597 Msa0546480:intron 40.0%
!! TACTTCATGTTATGGTGGGT+AGG + chr4_1:38214742-38214761 Msa0546480:intron 40.0%
AGAACTCAGAAATGGTGGTT+CGG - chr4_1:38214862-38214881 None:intergenic 40.0%
TAAGCAGAACTCAGAAATGG+TGG - chr4_1:38214867-38214886 None:intergenic 40.0%
TTCTTTCATTTAGGTGTGGG+AGG + chr4_1:38215105-38215124 Msa0546480:intron 40.0%
GGGCATAGTAGATTCCAATA+AGG + chr4_1:38215174-38215193 Msa0546480:CDS 40.0%
ATCAACTACACAACGTGAAC+AGG - chr4_1:38215254-38215273 None:intergenic 40.0%
AGATTGAGAAAGAGTAAGGC+AGG + chr4_1:38215453-38215472 Msa0546480:intron 40.0%
TTCAGCAACCTGAAAGAAAG+TGG - chr4_1:38215510-38215529 None:intergenic 40.0%
TAGGTATTTGGCATACACCA+TGG + chr4_1:38215729-38215748 Msa0546480:three_prime_UTR 40.0%
TAATGGAGGCTCCAAACAAT+AGG + chr4_1:38215763-38215782 Msa0546480:three_prime_UTR 40.0%
CCTAGAGTTAGCAAATTGTG+CGG + chr4_1:38215949-38215968 Msa0546480:three_prime_UTR 40.0%
CTCATGGCATCTCAATATGT+AGG + chr4_1:38216074-38216093 Msa0546480:three_prime_UTR 40.0%
! ATTGGCGGGAAGATGGATTT+GGG - chr4_1:38207803-38207822 None:intergenic 45.0%
! AATTGGCGGGAAGATGGATT+TGG - chr4_1:38207804-38207823 None:intergenic 45.0%
AGATGTAATTGGCGGGAAGA+TGG - chr4_1:38207810-38207829 None:intergenic 45.0%
!! TCCACTCTGAAATGGTGTTG+CGG - chr4_1:38207839-38207858 None:intergenic 45.0%
ACGGAAATGCGAGTAGTGAA+CGG - chr4_1:38207897-38207916 None:intergenic 45.0%
!!! TGGAGAGGGTTTTTTCTTGG+CGG - chr4_1:38208048-38208067 None:intergenic 45.0%
!!! AGGTGGAGAGGGTTTTTTCT+TGG - chr4_1:38208051-38208070 None:intergenic 45.0%
!!! AGGGTTTTGAACGGTATCTG+GGG - chr4_1:38208126-38208145 None:intergenic 45.0%
!!! GAACGGTTTCTAGGGTTTTG+AGG - chr4_1:38208157-38208176 None:intergenic 45.0%
! CGGGTTTTTGAACGGTTTCT+AGG - chr4_1:38208166-38208185 None:intergenic 45.0%
GGGAATAGTCGCTGAATTGA+AGG + chr4_1:38208244-38208263 Msa0546480:CDS 45.0%
ATCCGAGTTCGGTTGTTTGT+TGG + chr4_1:38208306-38208325 Msa0546480:CDS 45.0%
TCCGAGTTCGGTTGTTTGTT+GGG + chr4_1:38208307-38208326 Msa0546480:CDS 45.0%
TCCCAACAAACAACCGAACT+CGG - chr4_1:38208311-38208330 None:intergenic 45.0%
CAGAGAAACAGAAACGGAAC+AGG - chr4_1:38208344-38208363 None:intergenic 45.0%
GAAGGGTTGGAATTGGGAAT+TGG + chr4_1:38208512-38208531 Msa0546480:CDS 45.0%
! GATTATTAAGGCGCTTGCTG+AGG + chr4_1:38208544-38208563 Msa0546480:CDS 45.0%
!! AGATGGTGGAAACTAGGCTT+AGG + chr4_1:38208860-38208879 Msa0546480:intron 45.0%
! CAAGCTTTATCCCACTGAGT+GGG - chr4_1:38209071-38209090 None:intergenic 45.0%
! TCAAGCTTTATCCCACTGAG+TGG - chr4_1:38209072-38209091 None:intergenic 45.0%
TGACAGGACAAAGGTGACTT+AGG + chr4_1:38209143-38209162 Msa0546480:intron 45.0%
AATCCTCCATAGCCGACATT+TGG - chr4_1:38209423-38209442 None:intergenic 45.0%
CAATGAAGGATGGAAGACCA+TGG - chr4_1:38209534-38209553 None:intergenic 45.0%
ATCGTAAGATGGTTCCATGG+TGG - chr4_1:38210114-38210133 None:intergenic 45.0%
TTGTGTGTTTCCGTTCCTAC+AGG + chr4_1:38210167-38210186 Msa0546480:intron 45.0%
GGGTGTGTGTATGATTCACA+TGG + chr4_1:38210345-38210364 Msa0546480:intron 45.0%
!!! GGGAGGTGTCTGACAATTTT+AGG + chr4_1:38210593-38210612 Msa0546480:intron 45.0%
ATTTAAAGAGACCTCAGGGG+AGG + chr4_1:38210669-38210688 Msa0546480:intron 45.0%
AATTACACTAACCTCCCCTG+AGG - chr4_1:38210683-38210702 None:intergenic 45.0%
ATATGCCGAGCAAACTCTCT+TGG + chr4_1:38211041-38211060 Msa0546480:CDS 45.0%
GGTGCATCAGCTCAATAAGT+TGG + chr4_1:38211201-38211220 Msa0546480:intron 45.0%
ACTCCTTACGGATGGTGTAT+GGG + chr4_1:38211397-38211416 Msa0546480:CDS 45.0%
AGAAATGCTGAACGGAACAC+TGG + chr4_1:38211691-38211710 Msa0546480:CDS 45.0%
GAAATGCTGAACGGAACACT+GGG + chr4_1:38211692-38211711 Msa0546480:CDS 45.0%
GAAACTGCAGCAACAACATC+AGG - chr4_1:38211724-38211743 None:intergenic 45.0%
!! CTTGTTTTCCACCGTTGGAT+TGG + chr4_1:38211945-38211964 Msa0546480:intron 45.0%
AGCGAGAGTTGTTGATCCAT+TGG + chr4_1:38212011-38212030 Msa0546480:intron 45.0%
TCCCTTGTGCATCATAGACT+TGG + chr4_1:38212068-38212087 Msa0546480:intron 45.0%
GCCAAGTCTATGATGCACAA+GGG - chr4_1:38212072-38212091 None:intergenic 45.0%
AAGAGGGCAGACAGACTATT+TGG + chr4_1:38212374-38212393 Msa0546480:intron 45.0%
AGAGGGCAGACAGACTATTT+GGG + chr4_1:38212375-38212394 Msa0546480:intron 45.0%
ACAGAGAATCCTTCCTTTCC+AGG + chr4_1:38212852-38212871 Msa0546480:CDS 45.0%
!!! CGGTCCTTTAGTTTTACGTG+TGG + chr4_1:38212888-38212907 Msa0546480:intron 45.0%
!! GAAGAAGTGCTTGGCCATTA+AGG - chr4_1:38213174-38213193 None:intergenic 45.0%
TAATGGCCAAGCACTTCTTC+AGG + chr4_1:38213174-38213193 Msa0546480:CDS 45.0%
ACCTCTTTCGACGAAGAATC+TGG + chr4_1:38213706-38213725 Msa0546480:CDS 45.0%
TCCAGATTCTTCGTCGAAAG+AGG - chr4_1:38213710-38213729 None:intergenic 45.0%
! TATATGGGGGAACCCCTTTT+TGG + chr4_1:38213906-38213925 Msa0546480:intron 45.0%
! ATATGGGGGAACCCCTTTTT+GGG + chr4_1:38213907-38213926 Msa0546480:intron 45.0%
CATAGGGGACTCACTAGATT+TGG + chr4_1:38214357-38214376 Msa0546480:CDS 45.0%
! GTACCTATTGGTGCTTTCCA+TGG + chr4_1:38214379-38214398 Msa0546480:CDS 45.0%
ATCTGAATATGGCTAGGCCT+TGG + chr4_1:38214493-38214512 Msa0546480:intron 45.0%
TCTGAATATGGCTAGGCCTT+GGG + chr4_1:38214494-38214513 Msa0546480:intron 45.0%
TATCGTTGTCATAGCACGCA+AGG - chr4_1:38214613-38214632 None:intergenic 45.0%
!! ATGTTATGGTGGGTAGGAAC+TGG + chr4_1:38214748-38214767 Msa0546480:intron 45.0%
!! TGGGAATCACTTTAGAGCGA+AGG - chr4_1:38214810-38214829 None:intergenic 45.0%
CTCGCATCAAACCATACATC+AGG - chr4_1:38214960-38214979 None:intergenic 45.0%
TGTATGGTTTGATGCGAGTG+AGG + chr4_1:38214962-38214981 Msa0546480:CDS 45.0%
CTGACCTAGCTTGAAGGTAA+AGG - chr4_1:38215682-38215701 None:intergenic 45.0%
TGTACTCTGACCTAGCTTGA+AGG - chr4_1:38215688-38215707 None:intergenic 45.0%
TGCGCATCAAGCATGTCATT+TGG + chr4_1:38215790-38215809 Msa0546480:three_prime_UTR 45.0%
CAAGCAATACCAGGCACATT+GGG - chr4_1:38215841-38215860 None:intergenic 45.0%
ACAAGCAATACCAGGCACAT+TGG - chr4_1:38215842-38215861 None:intergenic 45.0%
!! CCGCACAATTTGCTAACTCT+AGG - chr4_1:38215952-38215971 None:intergenic 45.0%
AGAGTTAGCAAATTGTGCGG+CGG + chr4_1:38215952-38215971 Msa0546480:three_prime_UTR 45.0%
! TTGGCGGGAAGATGGATTTG+GGG - chr4_1:38207802-38207821 None:intergenic 50.0%
GCGGGATAGATGTAATTGGC+GGG - chr4_1:38207817-38207836 None:intergenic 50.0%
GGCGGGATAGATGTAATTGG+CGG - chr4_1:38207818-38207837 None:intergenic 50.0%
TGCGGCGGGATAGATGTAAT+TGG - chr4_1:38207821-38207840 None:intergenic 50.0%
!! ACTCTGAAATGGTGTTGCGG+CGG - chr4_1:38207836-38207855 None:intergenic 50.0%
GAGGGAGTGAGAGAATGGAA+GGG - chr4_1:38207941-38207960 None:intergenic 50.0%
AGAGGGAGTGAGAGAATGGA+AGG - chr4_1:38207942-38207961 None:intergenic 50.0%
ATGAGTTTGTCGAAGGCGGA+GGG - chr4_1:38208005-38208024 None:intergenic 50.0%
GGACATGAGTTTGTCGAAGG+CGG - chr4_1:38208009-38208028 None:intergenic 50.0%
GCCTTCGACAAACTCATGTC+CGG + chr4_1:38208008-38208027 Msa0546480:CDS 50.0%
!!! AGAGGGTTTTTTCTTGGCGG+CGG - chr4_1:38208045-38208064 None:intergenic 50.0%
GGAGATGATGAAGGTGGAGA+GGG - chr4_1:38208062-38208081 None:intergenic 50.0%
!!! ACGGTATCTGGGGTTTTGAG+TGG - chr4_1:38208116-38208135 None:intergenic 50.0%
GTATTTCGGATCTTGCTCGG+TGG - chr4_1:38208209-38208228 None:intergenic 50.0%
TCCGCAGCTGAAGAAGAAAC+CGG + chr4_1:38208274-38208293 Msa0546480:CDS 50.0%
TGTGATACATGCTACACCGG+AGG + chr4_1:38208439-38208458 Msa0546480:CDS 50.0%
TACACCGGAGGATCTTGTTC+CGG + chr4_1:38208451-38208470 Msa0546480:CDS 50.0%
ACAACCGGAACAAGATCCTC+CGG - chr4_1:38208458-38208477 None:intergenic 50.0%
AATTCCAACCCTTCATGCGC+AGG - chr4_1:38208506-38208525 None:intergenic 50.0%
TGCGCATGAAGGGTTGGAAT+TGG + chr4_1:38208505-38208524 Msa0546480:CDS 50.0%
GCGCATGAAGGGTTGGAATT+GGG + chr4_1:38208506-38208525 Msa0546480:CDS 50.0%
CTTTATCCCACTGAGTGGGT+CGG - chr4_1:38209067-38209086 None:intergenic 50.0%
! GTGTAGCCAAATGTCGGCTA+TGG + chr4_1:38209414-38209433 Msa0546480:intron 50.0%
! TAGCCAAATGTCGGCTATGG+AGG + chr4_1:38209417-38209436 Msa0546480:intron 50.0%
! TGTGAAGGATGGTGGTGCTA+TGG + chr4_1:38209480-38209499 Msa0546480:intron 50.0%
ACTCACACTCTCTTCCACCA+TGG + chr4_1:38210097-38210116 Msa0546480:intron 50.0%
CAAACTCTCTTGGCTGCCTT+AGG + chr4_1:38211051-38211070 Msa0546480:CDS 50.0%
CTTCAGTGTACACAGCAGCT+TGG - chr4_1:38211077-38211096 None:intergenic 50.0%
GGAGACTGAATTTCAGGAGG+CGG - chr4_1:38211111-38211130 None:intergenic 50.0%
ATTGAGCTGATGCACCCGAA+AGG - chr4_1:38211197-38211216 None:intergenic 50.0%
CACTCCTTACGGATGGTGTA+TGG + chr4_1:38211396-38211415 Msa0546480:CDS 50.0%
GTTCCCATACACCATCCGTA+AGG - chr4_1:38211403-38211422 None:intergenic 50.0%
TTTACTCCTGGTGTTCCGGT+TGG + chr4_1:38211440-38211459 Msa0546480:CDS 50.0%
TTACTCCTGGTGTTCCGGTT+GGG + chr4_1:38211441-38211460 Msa0546480:CDS 50.0%
TTTGACAGCATAGGCCCAAC+CGG - chr4_1:38211458-38211477 None:intergenic 50.0%
GGCCAAGTCTATGATGCACA+AGG - chr4_1:38212073-38212092 None:intergenic 50.0%
GATCGGAATTCATGCACGTC+TGG + chr4_1:38212417-38212436 Msa0546480:intron 50.0%
GACCGGCAAATGAGATTACC+TGG - chr4_1:38212873-38212892 None:intergenic 50.0%
TCCATGATAGAGTTGGCGGA+AGG + chr4_1:38213284-38213303 Msa0546480:intron 50.0%
CCATGATAGAGTTGGCGGAA+GGG + chr4_1:38213285-38213304 Msa0546480:intron 50.0%
TCATACGCAGGGCCCAAAAA+GGG - chr4_1:38213922-38213941 None:intergenic 50.0%
!! TTTTTGGGCCCTGCGTATGA+GGG + chr4_1:38213922-38213941 Msa0546480:intron 50.0%
ACAAAGCTCCCTCATACGCA+GGG - chr4_1:38213933-38213952 None:intergenic 50.0%
! TATGAGGGAGCTTTGTGCAC+CGG + chr4_1:38213937-38213956 Msa0546480:intron 50.0%
CACATAACTTAAGGGCAGCC+CGG - chr4_1:38213959-38213978 None:intergenic 50.0%
CCACATATGAACCCTCCAAG+CGG + chr4_1:38214213-38214232 Msa0546480:CDS 50.0%
TCGGCTCTACTTTGCAGCAT+AGG + chr4_1:38214340-38214359 Msa0546480:intron 50.0%
CGGCTCTACTTTGCAGCATA+GGG + chr4_1:38214341-38214360 Msa0546480:intron 50.0%
GGCTCTACTTTGCAGCATAG+GGG + chr4_1:38214342-38214361 Msa0546480:intron 50.0%
!! CGACCATGGAAAGCACCAAT+AGG - chr4_1:38214385-38214404 None:intergenic 50.0%
! ATTGGTGCTTTCCATGGTCG+TGG + chr4_1:38214385-38214404 Msa0546480:CDS 50.0%
! TTGGTGCTTTCCATGGTCGT+GGG + chr4_1:38214386-38214405 Msa0546480:CDS 50.0%
ATTCCCAAACCAAAGGTCCC+TGG + chr4_1:38214823-38214842 Msa0546480:intron 50.0%
AAACAAGAGCCAGGGACCTT+TGG - chr4_1:38214835-38214854 None:intergenic 50.0%
TCGGAGAGAAACAAGAGCCA+GGG - chr4_1:38214843-38214862 None:intergenic 50.0%
TTCGGAGAGAAACAAGAGCC+AGG - chr4_1:38214844-38214863 None:intergenic 50.0%
GGTAAACAGGGCTAATGGTC+AGG - chr4_1:38215144-38215163 None:intergenic 50.0%
AGCTCGGTAAACAGGGCTAA+TGG - chr4_1:38215149-38215168 None:intergenic 50.0%
! TTCCCCGTCTAGTTCGAGTT+CGG + chr4_1:38215342-38215361 Msa0546480:CDS 50.0%
GTACTTTACCTGCTCAGACG+AGG - chr4_1:38215393-38215412 None:intergenic 50.0%
! TGGCGGGAAGATGGATTTGG+GGG - chr4_1:38207801-38207820 None:intergenic 55.0%
!! CTCTGAAATGGTGTTGCGGC+GGG - chr4_1:38207835-38207854 None:intergenic 55.0%
GCCGCAACACCATTTCAGAG+TGG + chr4_1:38207835-38207854 Msa0546480:five_prime_UTR 55.0%
GGAGAGAGGGAGTGAGAGAA+TGG - chr4_1:38207946-38207965 None:intergenic 55.0%
!! GTGGCTTTGACGACATTGCG+CGG - chr4_1:38207980-38207999 None:intergenic 55.0%
CATGAGTTTGTCGAAGGCGG+AGG - chr4_1:38208006-38208025 None:intergenic 55.0%
GCCGGACATGAGTTTGTCGA+AGG - chr4_1:38208012-38208031 None:intergenic 55.0%
GGGAGATGATGAAGGTGGAG+AGG - chr4_1:38208063-38208082 None:intergenic 55.0%
TGAGTGGCGATGGAGGAGTA+GGG - chr4_1:38208100-38208119 None:intergenic 55.0%
TTGAGTGGCGATGGAGGAGT+AGG - chr4_1:38208101-38208120 None:intergenic 55.0%
!!! TCTGGGGTTTTGAGTGGCGA+TGG - chr4_1:38208110-38208129 None:intergenic 55.0%
! GCCGGTTTCTTCTTCAGCTG+CGG - chr4_1:38208278-38208297 None:intergenic 55.0%
GAACTCGGATCGAAACTCGC+CGG - chr4_1:38208296-38208315 None:intergenic 55.0%
GGCGAGTTTCGATCCGAGTT+CGG + chr4_1:38208295-38208314 Msa0546480:CDS 55.0%
AGAATTGCGCCTGCGCATGA+AGG + chr4_1:38208494-38208513 Msa0546480:CDS 55.0%
GAATTGCGCCTGCGCATGAA+GGG + chr4_1:38208495-38208514 Msa0546480:CDS 55.0%
ATGTAGCCGACCCACTCAGT+GGG + chr4_1:38209058-38209077 Msa0546480:intron 55.0%
TCGGCTATGGAGGATTGCAG+TGG + chr4_1:38209427-38209446 Msa0546480:intron 55.0%
GCTATGGAGGATTGCAGTGG+TGG + chr4_1:38209430-38209449 Msa0546480:intron 55.0%
! CTGGACGGCTCTAACAACAG+GGG - chr4_1:38210049-38210068 None:intergenic 55.0%
! CCTGGACGGCTCTAACAACA+GGG - chr4_1:38210050-38210069 None:intergenic 55.0%
! ACCTGGACGGCTCTAACAAC+AGG - chr4_1:38210051-38210070 None:intergenic 55.0%
! GGCAGCCAAGAGAGTTTGCT+CGG - chr4_1:38211049-38211068 None:intergenic 55.0%
GTACACAGCAGCTTGGCCTA+AGG - chr4_1:38211070-38211089 None:intergenic 55.0%
! CGGTTAGCTGCTGCTGAGAT+AGG + chr4_1:38211227-38211246 Msa0546480:intron 55.0%
GTGTCTGCACTCCTTACGGA+TGG + chr4_1:38211389-38211408 Msa0546480:CDS 55.0%
! ATACGATGGAGAGCGTGCTC+AGG + chr4_1:38211544-38211563 Msa0546480:CDS 55.0%
CGTGCTCAGGTGATGCTTCA+TGG + chr4_1:38211557-38211576 Msa0546480:intron 55.0%
CCCTTCCGCCAACTCTATCA+TGG - chr4_1:38213288-38213307 None:intergenic 55.0%
TGATAGAGTTGGCGGAAGGG+TGG + chr4_1:38213288-38213307 Msa0546480:intron 55.0%
CATACGCAGGGCCCAAAAAG+GGG - chr4_1:38213921-38213940 None:intergenic 55.0%
CTCATACGCAGGGCCCAAAA+AGG - chr4_1:38213923-38213942 None:intergenic 55.0%
!! CTTTTTGGGCCCTGCGTATG+AGG + chr4_1:38213921-38213940 Msa0546480:intron 55.0%
CACAAAGCTCCCTCATACGC+AGG - chr4_1:38213934-38213953 None:intergenic 55.0%
! ATGAGGGAGCTTTGTGCACC+GGG + chr4_1:38213938-38213957 Msa0546480:intron 55.0%
CGGGCTGCCCTTAAGTTATG+TGG + chr4_1:38213957-38213976 Msa0546480:intron 55.0%
CCGCTTGGAGGGTTCATATG+TGG - chr4_1:38214216-38214235 None:intergenic 55.0%
CAGTTGAGTGACCGCTTGGA+GGG - chr4_1:38214227-38214246 None:intergenic 55.0%
CTGTACGTTTCCCACGACCA+TGG - chr4_1:38214399-38214418 None:intergenic 55.0%
CATGGTCGTGGGAAACGTAC+AGG + chr4_1:38214397-38214416 Msa0546480:CDS 55.0%
! GAGCCAGGGACCTTTGGTTT+GGG - chr4_1:38214829-38214848 None:intergenic 55.0%
AGAGCCAGGGACCTTTGGTT+TGG - chr4_1:38214830-38214849 None:intergenic 55.0%
CCACTGCAGCTCGGTAAACA+GGG - chr4_1:38215156-38215175 None:intergenic 55.0%
CCTGTTTACCGAGCTGCAGT+GGG + chr4_1:38215154-38215173 Msa0546480:CDS 55.0%
CTACTATGCCCACTGCAGCT+CGG - chr4_1:38215165-38215184 None:intergenic 55.0%
AGGCCGAACTCGAACTAGAC+GGG - chr4_1:38215348-38215367 None:intergenic 55.0%
CAGGCCGAACTCGAACTAGA+CGG - chr4_1:38215349-38215368 None:intergenic 55.0%
CTTTACCTGCTCAGACGAGG+AGG - chr4_1:38215390-38215409 None:intergenic 55.0%
TTTGACGACATTGCGCGGCG+AGG - chr4_1:38207975-38207994 None:intergenic 60.0%
AGTTTGTCGAAGGCGGAGGG+TGG - chr4_1:38208002-38208021 None:intergenic 60.0%
!!! GGGTTTTTTCTTGGCGGCGG+CGG - chr4_1:38208042-38208061 None:intergenic 60.0%
GAGTGGCGATGGAGGAGTAG+GGG - chr4_1:38208099-38208118 None:intergenic 60.0%
!!! GGGGTTTTGAGTGGCGATGG+AGG - chr4_1:38208107-38208126 None:intergenic 60.0%
CACTGAGTGGGTCGGCTACA+TGG - chr4_1:38209059-38209078 None:intergenic 60.0%
CATGTAGCCGACCCACTCAG+TGG + chr4_1:38209057-38209076 Msa0546480:intron 60.0%
! GACGGCTCTAACAACAGGGG+AGG - chr4_1:38210046-38210065 None:intergenic 60.0%
CCCTGTTGTTAGAGCCGTCC+AGG + chr4_1:38210047-38210066 Msa0546480:CDS 60.0%
ATAGGCCCAACCGGAACACC+AGG - chr4_1:38211449-38211468 None:intergenic 60.0%
CCAGTTGAGTGACCGCTTGG+AGG - chr4_1:38214228-38214247 None:intergenic 60.0%
CCTCCAAGCGGTCACTCAAC+TGG + chr4_1:38214225-38214244 Msa0546480:CDS 60.0%
CAGCCAGTTGAGTGACCGCT+TGG - chr4_1:38214231-38214250 None:intergenic 60.0%
CCCTGTTTACCGAGCTGCAG+TGG + chr4_1:38215153-38215172 Msa0546480:CDS 60.0%
CCCACTGCAGCTCGGTAAAC+AGG - chr4_1:38215157-38215176 None:intergenic 60.0%
GGCCGAACTCGAACTAGACG+GGG - chr4_1:38215347-38215366 None:intergenic 60.0%
GCCTGACAAAGCTCCTGAGC+AGG + chr4_1:38215364-38215383 Msa0546480:CDS 60.0%
! GCCTGCTCAGGAGCTTTGTC+AGG - chr4_1:38215368-38215387 None:intergenic 60.0%
CAGAAGGGACCCAATGTGCC+TGG + chr4_1:38215829-38215848 Msa0546480:three_prime_UTR 60.0%
GGCGAGGAGTGGAGGAGAGA+GGG - chr4_1:38207959-38207978 None:intergenic 65.0%
TTGTCGAAGGCGGAGGGTGG+TGG - chr4_1:38207999-38208018 None:intergenic 65.0%
TGCGCCTGCGCATGAAGGGT+TGG + chr4_1:38208499-38208518 Msa0546480:CDS 65.0%
! AAGGCGCTTGCTGAGGCGTG+TGG + chr4_1:38208551-38208570 Msa0546480:CDS 65.0%
! CGCTTGCTGAGGCGTGTGGA+AGG + chr4_1:38208555-38208574 Msa0546480:CDS 65.0%
TCAGACGAGGAGGCCTGCTC+AGG - chr4_1:38215380-38215399 None:intergenic 65.0%
CGGCGAGGAGTGGAGGAGAG+AGG - chr4_1:38207960-38207979 None:intergenic 70.0%
CATTGCGCGGCGAGGAGTGG+AGG - chr4_1:38207967-38207986 None:intergenic 70.0%
CGACATTGCGCGGCGAGGAG+TGG - chr4_1:38207970-38207989 None:intergenic 70.0%
GCAGGCCTCCTCGTCTGAGC+AGG + chr4_1:38215382-38215401 Msa0546480:CDS 70.0%
! GGCGGCGGCGGCGCGTGCGC+CGG - chr4_1:38208030-38208049 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 38207780 38216234 38207780 ID=Msa0546480;Name=Msa0546480
chr4_1 mRNA 38207780 38216234 38207780 ID=Msa0546480-mRNA-1;Parent=Msa0546480;Name=Msa0546480-mRNA-1;_AED=0.30;_eAED=0.30;_QI=78|0.88|0.94|0.94|0.94|0.89|19|610|812
chr4_1 exon 38207780 38208607 38207780 ID=Msa0546480-mRNA-1:exon:9753;Parent=Msa0546480-mRNA-1
chr4_1 exon 38209149 38209265 38209149 ID=Msa0546480-mRNA-1:exon:9754;Parent=Msa0546480-mRNA-1
chr4_1 exon 38209967 38210068 38209967 ID=Msa0546480-mRNA-1:exon:9755;Parent=Msa0546480-mRNA-1
chr4_1 exon 38210847 38210948 38210847 ID=Msa0546480-mRNA-1:exon:9756;Parent=Msa0546480-mRNA-1
chr4_1 exon 38211024 38211140 38211024 ID=Msa0546480-mRNA-1:exon:9757;Parent=Msa0546480-mRNA-1
chr4_1 exon 38211335 38211565 38211335 ID=Msa0546480-mRNA-1:exon:9758;Parent=Msa0546480-mRNA-1
chr4_1 exon 38211652 38211746 38211652 ID=Msa0546480-mRNA-1:exon:9759;Parent=Msa0546480-mRNA-1
chr4_1 exon 38212786 38212873 38212786 ID=Msa0546480-mRNA-1:exon:9760;Parent=Msa0546480-mRNA-1
chr4_1 exon 38213088 38213219 38213088 ID=Msa0546480-mRNA-1:exon:9761;Parent=Msa0546480-mRNA-1
chr4_1 exon 38213697 38213809 38213697 ID=Msa0546480-mRNA-1:exon:9762;Parent=Msa0546480-mRNA-1
chr4_1 exon 38214175 38214276 38214175 ID=Msa0546480-mRNA-1:exon:9763;Parent=Msa0546480-mRNA-1
chr4_1 exon 38214357 38214418 38214357 ID=Msa0546480-mRNA-1:exon:9764;Parent=Msa0546480-mRNA-1
chr4_1 exon 38214591 38214662 38214591 ID=Msa0546480-mRNA-1:exon:9765;Parent=Msa0546480-mRNA-1
chr4_1 exon 38214764 38214837 38214764 ID=Msa0546480-mRNA-1:exon:9766;Parent=Msa0546480-mRNA-1
chr4_1 exon 38214927 38214983 38214927 ID=Msa0546480-mRNA-1:exon:9767;Parent=Msa0546480-mRNA-1
chr4_1 exon 38215118 38215195 38215118 ID=Msa0546480-mRNA-1:exon:9768;Parent=Msa0546480-mRNA-1
chr4_1 exon 38215326 38215403 38215326 ID=Msa0546480-mRNA-1:exon:9769;Parent=Msa0546480-mRNA-1
chr4_1 exon 38215521 38215614 38215521 ID=Msa0546480-mRNA-1:exon:9770;Parent=Msa0546480-mRNA-1
chr4_1 exon 38215650 38216234 38215650 ID=Msa0546480-mRNA-1:exon:9771;Parent=Msa0546480-mRNA-1
chr4_1 five_prime_UTR 38207780 38207857 38207780 ID=Msa0546480-mRNA-1:five_prime_utr;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38207858 38208607 38207858 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38209149 38209265 38209149 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38209967 38210068 38209967 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38210847 38210948 38210847 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38211024 38211140 38211024 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38211335 38211565 38211335 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38211652 38211746 38211652 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38212786 38212873 38212786 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38213088 38213219 38213088 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38213697 38213809 38213697 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38214175 38214276 38214175 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38214357 38214418 38214357 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38214591 38214662 38214591 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38214764 38214837 38214764 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38214927 38214983 38214927 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38215118 38215195 38215118 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38215326 38215403 38215326 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 CDS 38215521 38215589 38215521 ID=Msa0546480-mRNA-1:cds;Parent=Msa0546480-mRNA-1
chr4_1 three_prime_UTR 38215590 38215614 38215590 ID=Msa0546480-mRNA-1:three_prime_utr;Parent=Msa0546480-mRNA-1
chr4_1 three_prime_UTR 38215650 38216234 38215650 ID=Msa0546480-mRNA-1:three_prime_utr;Parent=Msa0546480-mRNA-1
Gene Sequence

>Msa0546480

ATGTTAGCATTGCATTTCAAATCGTGTTTCTCTCTTCCGTTCACTACTCGCATTTCCGTCAAATTTTCTTCGTCACTCTTCCCTTCCATTCTCTCACTCCCTCTCTCCTCCACTCCTCGCCGCGCAATGTCGTCAAAGCCACCACCCTCCGCCTTCGACAAACTCATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAAAAACCCTCTCCACCTTCATCATCTCCCAAAAAACGAAAATCCCCTACTCCTCCATCGCCACTCAAAACCCCAGATACCGTTCAAAACCCTAATAACAACCTCAAAACCCTAGAAACCGTTCAAAAACCCGAAGAAACTGTTCATGAAGAACCACCGAGCAAGATCCGAAATACATCATCATCTTCGAAGGGAATAGTCGCTGAATTGAAGGAAAAGGTTCCGCAGCTGAAGAAGAAACCGGCGAGTTTCGATCCGAGTTCGGTTGTTTGTTGGGAAAAAGACAAACCTGTTCCGTTTCTGTTTCTCTGTTTGGCGTTTGATATGATTAACGAAGAGAGTGGTAGAATTGTGATCACTGACATTGTGTGTAATTTGTTGAGAACTGTGATACATGCTACACCGGAGGATCTTGTTCCGGTTGTTTATTTGTCGTCGAATAGAATTGCGCCTGCGCATGAAGGGTTGGAATTGGGAATTGGTGATGCTTCGATTATTAAGGCGCTTGCTGAGGCGTGTGGAAGGACCGAGCAACAGATTAAGATTCAGTATAAGGACAAAGGTGACTTAGGCTTAGTTGCGAAAGCTAGCCGTTCTTCTCAGTCTATGATGCGGAAGCCTGATGCTTTGACTATTAGGAAGGTTTTCAAAACATTTCATCTTATTGCAAAGGGAAAAATACTCTTACCTCCCCTAAAATTTGTGCATATGTCACTCAGACCCCCTCTATTTTTTCACATGACAAATACCTCCCCTGTTGTTAGAGCCGTCCAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAACCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCCGAGCAAACTCTCTTGGCTGCCTTAGGCCAAGCTGCTGTGTACACTGAAGAACATTCTAAACCGCCTCCTGAAATTCAGTCTCCTTTTGAAGAGGCTGCTAAAATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGTCTGCACTCCTTACGGATGGTGTATGGGAACTTCCAAAGAAATGTGATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACGTGTGAATACAAATACGATGGAGAGCGTGCTCAGATACATTTCTTGGAGAATGGCTCAGTAGAGATTTACAGTAGAAATGCTGAACGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTGAAGAAATCATCTGTAACATCATTTATCCTTGATTGTGAACTTGTTGCATATGATCGTACAAAACAGAGAATCCTTCCTTTCCAGGTGCTTAGTACTCGTGCCCGCAAAAATGTAGCTTTGAGTGACATAAAGGTTGATGTTTGTGTCTTTGCTTTTGATTTGTTGTACCTTAATGGCCAAGCACTTCTTCAGGAAAACTTGAAAATCCGTAGAGAGCATCTCTATACCTCTTTCGACGAAGAATCTGGATTCTTTCAGTTTGCAACATCAACAACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACAAAGCCATTGATGCAAGTTGTGAGGGATTAATTATTAAAACATTACATGAAGACGCCACATATGAACCCTCCAAGCGGTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAACATAGGGGACTCACTAGATTTGGTACCTATTGGTGCTTTCCATGGTCGTGGGAAACGTACAGGTGTGTATGGTGCTTTTCTCCTTGCGTGCTATGACAACGATAACGAAGAGTTTCAAAGCATTTGTAAGATAGGAACTGGATTCAAAGAAGAAGTGCTTGAAGAACGTTCTACTAGCCTTCGCTCTAAAGTGATTCCCAAACCAAAGACATACTATAAATGTGGAGAATCAATCAATCCTGATGTATGGTTTGATGCGAGTGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTTACCGAGCTGCAGTGGGCATAGTAGATTCCAATAAGGGTATATCTCTTCGATTTCCCCGTCTAGTTCGAGTTCGGCCTGACAAAGCTCCTGAGCAGGCCTCCTCGTCTGAGCAGGTTGCTGAAATGTATAATGCTCAAAAACACAATCACAATGACAAACAGGATGACAATGAAGATGATTGA
Protein sequence

>Msa0546480

MLALHFKSCFSLPFTTRISVKFSSSLFPSILSLPLSSTPRRAMSSKPPPSAFDKLMSGARAAAAKKKPSPPSSSPKKRKSPTPPSPLKTPDTVQNPNNNLKTLETVQKPEETVHEEPPSKIRNTSSSSKGIVAELKEKVPQLKKKPASFDPSSVVCWEKDKPVPFLFLCLAFDMINEESGRIVITDIVCNLLRTVIHATPEDLVPVVYLSSNRIAPAHEGLELGIGDASIIKALAEACGRTEQQIKIQYKDKGDLGLVAKASRSSQSMMRKPDALTIRKVFKTFHLIAKGKILLPPLKFVHMSLRPPLFFHMTNTSPVVRAVQESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIQSPFEEAAKIVKKVYSVLPDYDKIVSALLTDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHFLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKSSVTSFILDCELVAYDRTKQRILPFQVLSTRARKNVALSDIKVDVCVFAFDLLYLNGQALLQENLKIRREHLYTSFDEESGFFQFATSTTSNDVEEIQKFLDKAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFKEEVLEERSTSLRSKVIPKPKTYYKCGESINPDVWFDASEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYNAQKHNHNDKQDDNEDD*