AlfalfaGEDB | Msa0094570

M. sativa cultivar zhongmu-4 / Msa0094570

KEGG: K10739
GO: GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047
PFAM: PF01336.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094570	XP_003610102.1	87.681	276	32	2	2	276	4	278	6.39e-177	498

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094570	sp\|Q8LFJ8\|RFA2B_ARATH	44.737	266	140	3	4	266	6	267	3.42e-75	233

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094570	G7JVE0	87.681	276	32	2	2	276	4	278	3.05e-177	498

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa0094570	-0.804954	1.685501e-49	-8.615850e-47
Msa0015570	Msa0094570	0.837496	5.021605e-57	-8.615850e-47
Msa0033220	Msa0094570	0.804448	2.149789e-49	-8.615850e-47
Msa0037680	Msa0094570	0.806602	7.597496e-50	-8.615850e-47
Msa0038150	Msa0094570	-0.810265	1.255910e-50	-8.615850e-47
Msa0040640	Msa0094570	0.801219	9.984510e-49	-8.615850e-47
Msa0042640	Msa0094570	0.832116	1.135836e-55	-8.615850e-47
Msa0044780	Msa0094570	-0.821037	4.994258e-53	-8.615850e-47
Msa0062190	Msa0094570	0.803128	4.041976e-49	-8.615850e-47
Msa0062340	Msa0094570	0.809787	1.592505e-50	-8.615850e-47
Msa0065670	Msa0094570	-0.808308	3.301026e-50	-8.615850e-47
Msa0067060	Msa0094570	0.805024	1.630007e-49	-8.615850e-47
Msa0075530	Msa0094570	0.821623	3.658695e-53	-8.615850e-47
Msa0077560	Msa0094570	0.805756	1.144502e-49	-8.615850e-47
Msa0078130	Msa0094570	0.818232	2.182160e-52	-8.615850e-47
Msa0094570	Msa0094790	0.850231	1.940453e-60	-8.615850e-47
Msa0094570	Msa0095810	-0.808416	3.130036e-50	-8.615850e-47
Msa0094570	Msa0102240	0.821710	3.494352e-53	-8.615850e-47
Msa0094570	Msa0106540	0.813878	2.048428e-51	-8.615850e-47
Msa0094570	Msa0123070	0.800407	1.462067e-48	-8.615850e-47
Msa0094570	Msa0125590	0.804102	2.538330e-49	-8.615850e-47
Msa0094570	Msa0133140	-0.805212	1.488370e-49	-8.615850e-47
Msa0094570	Msa0140130	0.808194	3.492011e-50	-8.615850e-47
Msa0094570	Msa0141640	0.807126	5.887198e-50	-8.615850e-47
Msa0094570	Msa0156050	0.821160	4.680228e-53	-8.615850e-47
Msa0094570	Msa0156090	0.820097	8.211753e-53	-8.615850e-47
Msa0094570	Msa0168050	0.811061	8.451288e-51	-8.615850e-47
Msa0094570	Msa0178450	0.835140	1.995387e-56	-8.615850e-47
Msa0094570	Msa0203080	0.801367	9.309401e-49	-8.615850e-47
Msa0094570	Msa0238960	-0.805890	1.072902e-49	-8.615850e-47
Msa0094570	Msa0241750	0.823701	1.202347e-53	-8.615850e-47
Msa0094570	Msa0267450	-0.800005	1.765712e-48	-8.615850e-47
Msa0094570	Msa0267510	-0.801575	8.439919e-49	-8.615850e-47
Msa0094570	Msa0269210	0.805447	1.329136e-49	-8.615850e-47
Msa0094570	Msa0284800	0.823767	1.160257e-53	-8.615850e-47
Msa0094570	Msa0293060	-0.810000	1.432943e-50	-8.615850e-47
Msa0094570	Msa0313900	0.808992	2.357776e-50	-8.615850e-47
Msa0094570	Msa0330520	0.803900	2.795410e-49	-8.615850e-47
Msa0094570	Msa0373500	0.824722	6.918531e-54	-8.615850e-47
Msa0094570	Msa0383000	0.802539	5.346656e-49	-8.615850e-47
Msa0094570	Msa0415450	0.805071	1.593064e-49	-8.615850e-47
Msa0094570	Msa0416160	0.802813	4.695430e-49	-8.615850e-47
Msa0094570	Msa0432010	0.820586	6.343089e-53	-8.615850e-47
Msa0094570	Msa0456670	0.807500	4.903390e-50	-8.615850e-47
Msa0094570	Msa0457570	0.806100	9.691713e-50	-8.615850e-47
Msa0094570	Msa0460070	0.803919	2.770254e-49	-8.615850e-47
Msa0094570	Msa0466520	0.807103	5.951867e-50	-8.615850e-47
Msa0094570	Msa0467170	0.844549	7.055994e-59	-8.615850e-47
Msa0094570	Msa0467330	0.846073	2.730070e-59	-8.615850e-47
Msa0094570	Msa0468390	0.809011	2.335682e-50	-8.615850e-47
Msa0094570	Msa0468620	0.844958	5.473873e-59	-8.615850e-47
Msa0094570	Msa0473910	0.822148	2.765798e-53	-8.615850e-47
Msa0094570	Msa0514500	0.842653	2.267006e-58	-8.615850e-47
Msa0094570	Msa0520870	0.811069	8.418138e-51	-8.615850e-47
Msa0094570	Msa0527850	0.837369	5.414780e-57	-8.615850e-47
Msa0094570	Msa0541740	0.801419	9.085634e-49	-8.615850e-47
Msa0094570	Msa0546480	0.811554	6.607022e-51	-8.615850e-47
Msa0094570	Msa0548260	-0.803154	3.990642e-49	-8.615850e-47
Msa0094570	Msa0569530	0.808836	2.546633e-50	-8.615850e-47
Msa0094570	Msa0574900	0.801851	7.408669e-49	-8.615850e-47
Msa0094570	Msa0582460	0.842074	3.228405e-58	-8.615850e-47
Msa0094570	Msa0586200	0.843999	9.918314e-59	-8.615850e-47
Msa0094570	Msa0603180	-0.801809	7.555695e-49	-8.615850e-47
Msa0094570	Msa0612520	0.806554	7.776266e-50	-8.615850e-47
Msa0094570	Msa0619710	0.809316	2.009279e-50	-8.615850e-47
Msa0094570	Msa0625620	0.846955	1.568983e-59	-8.615850e-47
Msa0094570	Msa0642550	0.824264	8.867981e-54	-8.615850e-47
Msa0094570	Msa0647440	0.802246	6.144226e-49	-8.615850e-47
Msa0094570	Msa0657210	0.806203	9.218959e-50	-8.615850e-47
Msa0094570	Msa0659370	0.800007	1.763944e-48	-8.615850e-47
Msa0094570	Msa0661480	0.804891	1.737369e-49	-8.615850e-47
Msa0094570	Msa0662820	0.836374	9.713408e-57	-8.615850e-47
Msa0094570	Msa0663290	0.808633	2.814132e-50	-8.615850e-47
Msa0094570	Msa0664070	0.805680	1.187577e-49	-8.615850e-47
Msa0094570	Msa0701250	0.802532	5.364355e-49	-8.615850e-47
Msa0094570	Msa0717900	0.807459	5.002728e-50	-8.615850e-47
Msa0094570	Msa0719270	0.846440	2.169030e-59	-8.615850e-47
Msa0094570	Msa0719750	0.821356	4.217385e-53	-8.615850e-47
Msa0094570	Msa0734250	0.816424	5.569601e-52	-8.615850e-47
Msa0094570	Msa0737020	0.831372	1.732667e-55	-8.615850e-47
Msa0094570	Msa0745140	0.841499	4.580074e-58	-8.615850e-47
Msa0094570	Msa0746650	0.805801	1.120345e-49	-8.615850e-47
Msa0094570	Msa0753590	-0.803977	2.694498e-49	-8.615850e-47
Msa0094570	Msa0754430	0.804957	1.683626e-49	-8.615850e-47
Msa0094570	Msa0754450	0.801302	9.598253e-49	-8.615850e-47
Msa0094570	Msa0776640	0.844329	8.088718e-59	-8.615850e-47
Msa0094570	Msa0778600	0.862927	3.582226e-64	-8.615850e-47
Msa0094570	Msa0780910	0.807546	4.795254e-50	-8.615850e-47
Msa0094570	Msa0790650	-0.813768	2.165634e-51	-8.615850e-47
Msa0094570	Msa0802760	0.820985	5.135092e-53	-8.615850e-47
Msa0094570	Msa0813160	0.808066	3.716729e-50	-8.615850e-47
Msa0094570	Msa0815970	0.847846	8.927804e-60	-8.615850e-47
Msa0094570	Msa0821160	0.809074	2.265139e-50	-8.615850e-47
Msa0094570	Msa0825920	0.836264	1.035931e-56	-8.615850e-47
Msa0094570	Msa0827340	-0.802113	6.544888e-49	-8.615850e-47
Msa0094570	Msa0840520	0.839442	1.580809e-57	-8.615850e-47
Msa0094570	Msa0841050	0.834633	2.677416e-56	-8.615850e-47
Msa0094570	Msa0865420	0.849047	4.155319e-60	-8.615850e-47
Msa0094570	Msa0866530	0.868101	8.386326e-66	-8.615850e-47
Msa0094570	Msa0879920	0.827375	1.619624e-54	-8.615850e-47
Msa0094570	Msa0945030	0.852876	3.461305e-61	-8.615850e-47
Msa0094570	Msa0964400	-0.805221	1.482057e-49	-8.615850e-47
Msa0094570	Msa0972740	0.805325	1.409396e-49	-8.615850e-47
Msa0094570	Msa1022420	0.812935	3.299629e-51	-8.615850e-47
Msa0094570	Msa1031410	0.803492	3.397650e-49	-8.615850e-47
Msa0094570	Msa1042300	0.801274	9.728547e-49	-8.615850e-47
Msa0094570	Msa1044250	0.825406	4.770299e-54	-8.615850e-47
Msa0094570	Msa1078860	0.804025	2.632726e-49	-8.615850e-47
Msa0094570	Msa1149910	0.817695	2.886532e-52	-8.615850e-47
Msa0094570	Msa1156720	0.800657	1.300367e-48	-8.615850e-47
Msa0094570	Msa1159590	0.823836	1.117981e-53	-8.615850e-47
Msa0094570	Msa1183910	0.838210	3.291991e-57	-8.615850e-47
Msa0094570	Msa1190390	0.808501	3.002454e-50	-8.615850e-47
Msa0094570	Msa1192560	0.858179	9.836107e-63	-8.615850e-47
Msa0094570	Msa1192590	0.850628	1.501232e-60	-8.615850e-47
Msa0094570	Msa1194240	0.810202	1.296155e-50	-8.615850e-47
Msa0094570	Msa1201170	0.842453	2.562546e-58	-8.615850e-47
Msa0094570	Msa1206040	0.800907	1.156487e-48	-8.615850e-47
Msa0094570	Msa1218820	0.800255	1.570376e-48	-8.615850e-47
Msa0094570	Msa1221120	0.981659	3.952668e-153	-8.615850e-47
Msa0094570	Msa1228580	0.842378	2.681685e-58	-8.615850e-47
Msa0094570	Msa1252790	0.809119	2.214684e-50	-8.615850e-47
Msa0094570	Msa1254100	0.809830	1.558289e-50	-8.615850e-47
Msa0094570	Msa1254420	0.800177	1.628867e-48	-8.615850e-47
Msa0094570	Msa1254540	0.812690	3.734426e-51	-8.615850e-47
Msa0094570	Msa1265450	0.981679	3.525471e-153	-8.615850e-47
Msa0094570	Msa1266120	-0.801552	8.530730e-49	-8.615850e-47
Msa0094570	Msa1267930	0.803032	4.230727e-49	-8.615850e-47
Msa0094570	Msa1279120	0.821011	5.064787e-53	-8.615850e-47
Msa0094570	Msa1290380	0.817577	3.068490e-52	-8.615850e-47
Msa0094570	Msa1290440	0.817441	3.292487e-52	-8.615850e-47
Msa0094570	Msa1294280	0.829374	5.336055e-55	-8.615850e-47
Msa0094570	Msa1295480	-0.808809	2.580015e-50	-8.615850e-47
Msa0094570	Msa1297070	0.804325	2.280161e-49	-8.615850e-47
Msa0094570	Msa1300460	0.816867	4.430683e-52	-8.615850e-47
Msa0094570	Msa1308850	0.837263	5.761211e-57	-8.615850e-47
Msa0094570	Msa1338810	-0.801362	9.331543e-49	-8.615850e-47
Msa0094570	Msa1368390	0.802758	4.819846e-49	-8.615850e-47
Msa0094570	Msa1368750	0.820101	8.194984e-53	-8.615850e-47
Msa0094570	Msa1374790	0.815810	7.638537e-52	-8.615850e-47
Msa0094570	Msa1382830	0.804871	1.754034e-49	-8.615850e-47
Msa0094570	Msa1384150	0.824161	9.374755e-54	-8.615850e-47
Msa0094570	Msa1387440	0.810562	1.083589e-50	-8.615850e-47
Msa0094570	Msa1387500	0.800271	1.558945e-48	-8.615850e-47
Msa0094570	Msa1405830	0.815174	1.058041e-51	-8.615850e-47
Msa0094570	Msa1406720	0.807817	4.200161e-50	-8.615850e-47
Msa0094570	Msa1417370	0.815283	1.000687e-51	-8.615850e-47
Msa0094570	Msa1428230	-0.813879	2.047230e-51	-8.615850e-47
Msa0094570	Msa1429070	0.813523	2.451504e-51	-8.615850e-47
Msa0094570	Msa1435960	0.831094	2.028514e-55	-8.615850e-47
Msa0094570	Msa1436620	0.840639	7.705497e-58	-8.615850e-47
Msa0094570	Msa1450190	0.804303	2.304775e-49	-8.615850e-47
Msa0094570	Msa1451820	0.814904	1.214653e-51	-8.615850e-47
Msa0094570	Msa1454010	0.826068	3.323423e-54	-8.615850e-47
Msa0094570	Msa1457840	0.812242	4.677816e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094570	MtrunA17_Chr4g0072301	87.681	276	32	2	2	276	4	278	0.0	498
Msa0094570	MtrunA17_Chr1g0148131	39.781	274	157	5	2	273	5	272	5.08e-66	207

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094570	AT3G02920.1	44.737	266	140	3	4	266	6	267	3.48e-76	233
Msa0094570	AT2G24490.1	41.606	274	153	5	2	271	5	275	1.03e-68	214
Msa0094570	AT2G24490.2	41.606	274	153	5	2	271	5	275	1.03e-68	214
Msa0094570	AT3G02920.3	46.875	224	112	3	4	224	6	225	4.42e-67	208
Msa0094570	AT3G02920.2	46.875	224	112	3	4	224	6	225	4.42e-67	208

Find 88 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGACCTGCTCTTGATGTTCT+TGG	0.266087	1_2:-77846963	Msa0094570:CDS
ATATTTAATATCAAAATAAT+TGG	0.266733	1_2:+77850692	None:intergenic
TCTATATAATTCGAAGTTAC+AGG	0.284161	1_2:-77848875	Msa0094570:intron
GGAATGTATGTGCGTTTATA+TGG	0.285958	1_2:-77849174	Msa0094570:CDS
GAACAATCTTGGAGTTTCTT+TGG	0.301777	1_2:-77847096	Msa0094570:CDS
GCTGATTGGGGATGCTAGCC+TGG	0.316731	1_2:+77848013	None:intergenic
TTGGGAGCATGTTGCTGATT+GGG	0.326890	1_2:+77848000	None:intergenic
GAATCTATTGCGAACAATCT+TGG	0.341410	1_2:-77847107	Msa0094570:CDS
GGCAGTGCTTTGTATGGAAT+TGG	0.344322	1_2:+77847981	None:intergenic
TAATGCATCTGTTGTGTAAA+CGG	0.354904	1_2:-77846666	Msa0094570:three_prime_UTR
GGTAGGGTTTGCAACAAATC+TGG	0.360046	1_2:-77850177	Msa0094570:CDS
TCTGTCCAGGTTACTCTTGT+TGG	0.363119	1_2:-77850198	Msa0094570:intron
GAACAATCGAGTGTACTAAA+TGG	0.372337	1_2:-77850113	Msa0094570:intron
TATGGTTGACTTACTTGATT+TGG	0.375750	1_2:+77847928	None:intergenic
AGGCAAAGTAGAGCATATTA+AGG	0.395757	1_2:+77846851	None:intergenic
GACGGTAACGCCGCTTTCTC+CGG	0.395800	1_2:-77850601	Msa0094570:CDS
CCTGAGAGAGAAAATACTTA+AGG	0.400373	1_2:+77849122	None:intergenic
TGTTCCGACGGTTGACATCT+TGG	0.401459	1_2:-77846894	Msa0094570:exon
ATTGGGAGCATGTTGCTGAT+TGG	0.409358	1_2:+77847999	None:intergenic
AATGCATCTGTTGTGTAAAC+GGG	0.411134	1_2:-77846665	Msa0094570:three_prime_UTR
CATAAATGCACTCAAGGAAA+TGG	0.411902	1_2:+77848902	None:intergenic
TGCTATCTATCGCTAGTTCA+AGG	0.414089	1_2:+77846696	None:intergenic
CGGCGGTTTCATGCCTTCTC+AGG	0.416064	1_2:-77850578	Msa0094570:CDS
TCTGTTCAATCACGGAAAAT+CGG	0.416253	1_2:-77850640	Msa0094570:five_prime_UTR
CCAGGTTACTCTTGTTGGTA+GGG	0.423374	1_2:-77850193	Msa0094570:intron
AGAGGATTCACCGCCTTGAT+TGG	0.430570	1_2:+77850555	None:intergenic
TCCAGGTTACTCTTGTTGGT+AGG	0.433239	1_2:-77850194	Msa0094570:intron
ATGTTTCAGGGCAATGGAGG+GGG	0.447338	1_2:-77847141	Msa0094570:intron
ATAAGGAAAAGCTGTAGATC+TGG	0.459153	1_2:-77846790	Msa0094570:three_prime_UTR
ATTCTACATATGCGGACATA+AGG	0.460664	1_2:-77846807	Msa0094570:three_prime_UTR
GCAGTGCTTTGTATGGAATT+GGG	0.465281	1_2:+77847982	None:intergenic
ACTTACTTGATTTGGTGGAA+TGG	0.471859	1_2:+77847936	None:intergenic
ATGCCTTCTCAGGCCAATCA+AGG	0.473622	1_2:-77850568	Msa0094570:CDS
ATCTCATTGAAGTCAGTAAC+GGG	0.478767	1_2:+77848931	None:intergenic
TTACTGATGTTTCAGGGCAA+TGG	0.480244	1_2:-77847147	Msa0094570:intron
AACGCCGCTTTCTCCGGCGG+CGG	0.487082	1_2:-77850595	Msa0094570:CDS
TCCACTGCCATTGCATCAGC+AGG	0.490315	1_2:+77849975	None:intergenic
CGTTTATATGGACAATTGAA+AGG	0.493252	1_2:-77849162	Msa0094570:CDS
TCGAAATTTCTGTTCAATCA+CGG	0.494939	1_2:-77850648	Msa0094570:five_prime_UTR
TTTGTACTTGACGATGGCAC+TGG	0.500314	1_2:-77850135	Msa0094570:CDS
GGTTGACTTACTTGATTTGG+TGG	0.502710	1_2:+77847931	None:intergenic
CCGCCTTGATTGGCCTGAGA+AGG	0.504121	1_2:+77850565	None:intergenic
TTCTCCGGTCAGCAGAATAA+TGG	0.506082	1_2:-77847844	Msa0094570:CDS
CAATCAAGTGATGATAGAAC+CGG	0.507029	1_2:-77850317	Msa0094570:CDS
TTTAAAATACACCTGTTTGT+GGG	0.516085	1_2:+77847778	None:intergenic
ATACAAAGCACTGCCACAAA+AGG	0.519488	1_2:-77847973	Msa0094570:CDS
GGTTGACATCTTGGTGGCAG+AGG	0.522125	1_2:-77846885	Msa0094570:exon
CTGATGTTTCAGGGCAATGG+AGG	0.528490	1_2:-77847144	Msa0094570:intron
CTGATTGGGGATGCTAGCCT+GGG	0.532257	1_2:+77848014	None:intergenic
ATCCTCTCTCACTCCCTCCA+AGG	0.534425	1_2:-77850539	Msa0094570:intron
AACCTTGGAGGGAGTGAGAG+AGG	0.538834	1_2:+77850537	None:intergenic
TGATGTTTCAGGGCAATGGA+GGG	0.541054	1_2:-77847143	Msa0094570:intron
GATGAACATAAATGCACTCA+AGG	0.548211	1_2:+77848896	None:intergenic
CTTGATGTTCTTGGTAGCGA+AGG	0.548492	1_2:-77846954	Msa0094570:CDS
TCACGAACCTGCTGATGCAA+TGG	0.548561	1_2:-77849982	Msa0094570:CDS
GAAACCGCCGCCGGAGAAAG+CGG	0.554313	1_2:+77850591	None:intergenic
GTCCGCATATGTAGAATCAC+AGG	0.556314	1_2:+77846813	None:intergenic
GGTCTTACTATTGACGGTGT+TGG	0.564776	1_2:-77850296	Msa0094570:CDS
ACCTGCTGATGCAATGGCAG+TGG	0.566074	1_2:-77849976	Msa0094570:CDS
AGCGAAGGTCTCGTTTATGA+AGG	0.568213	1_2:-77846939	Msa0094570:CDS
AATGCACTCAAGGAAATGGC+TGG	0.568941	1_2:+77848906	None:intergenic
TGGGAGCATGTTGCTGATTG+GGG	0.569773	1_2:+77848001	None:intergenic
TCCGACGGTTGACATCTTGG+TGG	0.571154	1_2:-77846891	Msa0094570:exon
GATGTTTCAGGGCAATGGAG+GGG	0.572668	1_2:-77847142	Msa0094570:intron
GCTATCTATCGCTAGTTCAA+GGG	0.573987	1_2:+77846697	None:intergenic
CATCACTTGATTGAAGAGCA+TGG	0.578483	1_2:+77850327	None:intergenic
CTGACCATTATTCTGCTGAC+CGG	0.581910	1_2:+77847840	None:intergenic
CTACCAAGAACATCAAGAGC+AGG	0.583911	1_2:+77846960	None:intergenic
GAACATATCTTATAGTGCAT+CGG	0.584167	1_2:+77846912	None:intergenic
AACACCGTCAATAGTAAGAC+CGG	0.588874	1_2:+77850298	None:intergenic
AGAACTGAGAAGAACCTTGG+AGG	0.589879	1_2:+77850525	None:intergenic
TTTAAGTTTGTACTTGACGA+TGG	0.593316	1_2:-77850141	Msa0094570:CDS
AGAACCGGTCTTACTATTGA+CGG	0.593890	1_2:-77850302	Msa0094570:CDS
ATATTTGTGGCAGCATACCC+AGG	0.594726	1_2:-77848031	Msa0094570:intron
CACTATAAGATATGTTCCGA+CGG	0.597266	1_2:-77846906	Msa0094570:CDS
GGTAACGCCGCTTTCTCCGG+CGG	0.597825	1_2:-77850598	Msa0094570:CDS
AATCTCATTGAAGTCAGTAA+CGG	0.599498	1_2:+77848930	None:intergenic
GAACTGAGAAGAACCTTGGA+GGG	0.608680	1_2:+77850526	None:intergenic
TGTTTCAGGGCAATGGAGGG+GGG	0.625958	1_2:-77847140	Msa0094570:intron
GTTACCGTCGAACTGACTCA+TGG	0.626404	1_2:+77850615	None:intergenic
TACCTGTGATTCTACATATG+CGG	0.631647	1_2:-77846815	Msa0094570:three_prime_UTR
TCAGAAGAGTGTTCATGACT+TGG	0.632574	1_2:-77847821	Msa0094570:CDS
AGAAGGCATGAAACCGCCGC+CGG	0.632650	1_2:+77850582	None:intergenic
TTGATCTGCTTGATCGTCAG+CGG	0.639696	1_2:+77850350	None:intergenic
GCCACCAAGATGTCAACCGT+CGG	0.642703	1_2:+77846890	None:intergenic
GTGAAGAAAGTAGAAACAAG+CGG	0.667712	1_2:-77850758	Msa0094570:five_prime_UTR
GGCACCATGAGTCAGTTCGA+CGG	0.714184	1_2:-77850619	Msa0094570:exon
CCTTCTCAGGCCAATCAAGG+CGG	0.735731	1_2:-77850565	Msa0094570:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTTTTTTTTGAAAGATA+AGG	-	chr1_2:77850748-77850767	Msa0094570:five_prime_UTR	10.0%
!!!	ATTTTTTTTTTGAAAGATAA+GGG	-	chr1_2:77850749-77850768	Msa0094570:five_prime_UTR	10.0%
!!	TAAGATTATTAAGAAGAAAA+TGG	+	chr1_2:77846842-77846861	None:intergenic	15.0%
!!!	TTTTTTTCCATAAAAGAAAA+AGG	-	chr1_2:77847863-77847882	Msa0094570:intron	15.0%
!!	ATTAAAAAGTTAAAGGTTTA+GGG	+	chr1_2:77848014-77848033	None:intergenic	15.0%
!!!	ATTTTATTTTGTAATGACTA+GGG	+	chr1_2:77848583-77848602	None:intergenic	15.0%
!!!	TATTTTATTTTGTAATGACT+AGG	+	chr1_2:77848584-77848603	None:intergenic	15.0%
!!	AATAACACAGAATCAAAAAT+CGG	-	chr1_2:77846600-77846619	Msa0094570:three_prime_UTR	20.0%
!!	TTATACTTTCTATGTAAGTA+AGG	-	chr1_2:77847476-77847495	Msa0094570:intron	20.0%
!!!	TCTTATAACTAAGTTTTACT+AGG	-	chr1_2:77847807-77847826	Msa0094570:CDS	20.0%
!!!	TTTCTTTCCTTTTTCTTTTA+TGG	+	chr1_2:77847873-77847892	None:intergenic	20.0%
!!	GATTAAAAAGTTAAAGGTTT+AGG	+	chr1_2:77848015-77848034	None:intergenic	20.0%
!!!	AAAATTCCATTTTCATTGTT+AGG	-	chr1_2:77848135-77848154	Msa0094570:intron	20.0%
!!	TGAAAATAAGATACATGTTT+AGG	-	chr1_2:77849071-77849090	Msa0094570:intron	20.0%
!!	GAAAATAAGATACATGTTTA+GGG	-	chr1_2:77849072-77849091	Msa0094570:intron	20.0%
!!!	ATTAAATTACTGTTTCTTGT+TGG	+	chr1_2:77849147-77849166	None:intergenic	20.0%
!!	TAAGCAGAAAATAAAAGATA+TGG	+	chr1_2:77849428-77849447	None:intergenic	20.0%
!!	GTCAACTAGTAAAAAATTTA+CGG	-	chr1_2:77849882-77849901	Msa0094570:intron	20.0%
!!!	AACAGTGACAAAATTATTTT+TGG	-	chr1_2:77849925-77849944	Msa0094570:intron	20.0%
!!!	TGTTTTACTTTGTTAGAATT+GGG	-	chr1_2:77850121-77850140	Msa0094570:CDS	20.0%
!!!	AACATCAGTAACAAAATTTT+AGG	+	chr1_2:77850179-77850198	None:intergenic	20.0%
!	ATAACACAGAATCAAAAATC+GGG	-	chr1_2:77846601-77846620	Msa0094570:three_prime_UTR	25.0%
!!	TCATGTAATTGATGTGTTTT+AGG	-	chr1_2:77846917-77846936	Msa0094570:CDS	25.0%
!!	CATGTAATTGATGTGTTTTA+GGG	-	chr1_2:77846918-77846937	Msa0094570:CDS	25.0%
!!	TGTATGTTACCTTTTCTTTA+CGG	-	chr1_2:77847391-77847410	Msa0094570:intron	25.0%
!	GTACTAAATGCAATACAATA+AGG	+	chr1_2:77847429-77847448	None:intergenic	25.0%
!	ATTGCATTTAGTACTATACT+TGG	-	chr1_2:77847435-77847454	Msa0094570:intron	25.0%
!	GGGTGATTATAATATCAAAA+TGG	+	chr1_2:77847680-77847699	None:intergenic	25.0%
!	AACTTAGTTATAAGAAGAAG+CGG	+	chr1_2:77847802-77847821	None:intergenic	25.0%
!	CATTTGCCATTCAAAATAAA+AGG	+	chr1_2:77847941-77847960	None:intergenic	25.0%
!	CAAAGGGATTAAAAAGTTAA+AGG	+	chr1_2:77848021-77848040	None:intergenic	25.0%
!	ATAAATAAATAAACCAGAGG+GGG	+	chr1_2:77848085-77848104	None:intergenic	25.0%
!	GATAAATAAATAAACCAGAG+GGG	+	chr1_2:77848086-77848105	None:intergenic	25.0%
!	CGATAAATAAATAAACCAGA+GGG	+	chr1_2:77848087-77848106	None:intergenic	25.0%
!	ACGATAAATAAATAAACCAG+AGG	+	chr1_2:77848088-77848107	None:intergenic	25.0%
!	TCTATATAATTCGAAGTTAC+AGG	-	chr1_2:77848460-77848479	Msa0094570:intron	25.0%
!!	TTTTTATAGTGTGAATGTTG+TGG	+	chr1_2:77848652-77848671	None:intergenic	25.0%
!	ACTCTCAGTTGTATAAAATT+AGG	-	chr1_2:77848679-77848698	Msa0094570:intron	25.0%
!!!	TTTACGTTTTGAATTTGACA+GGG	+	chr1_2:77848794-77848813	None:intergenic	25.0%
!!!	ATTTACGTTTTGAATTTGAC+AGG	+	chr1_2:77848795-77848814	None:intergenic	25.0%
!!	TATAAAGAACTAATTTGCCT+AGG	-	chr1_2:77849190-77849209	Msa0094570:intron	25.0%
!!	TTTAAAATACACCTGTTTGT+GGG	+	chr1_2:77849560-77849579	None:intergenic	25.0%
!!!	TTTTAAAATACACCTGTTTG+TGG	+	chr1_2:77849561-77849580	None:intergenic	25.0%
!!	AGTAGAAAACACACAATTTT+GGG	+	chr1_2:77849830-77849849	None:intergenic	25.0%
!!	AAGTAGAAAACACACAATTT+TGG	+	chr1_2:77849831-77849850	None:intergenic	25.0%
!	AACTAGTAAAAAATTTACGG+TGG	-	chr1_2:77849885-77849904	Msa0094570:intron	25.0%
!!!	TTTTTGGCAATTTAACTTGA+TGG	-	chr1_2:77849941-77849960	Msa0094570:intron	25.0%
!	CTGAAAACTTAATAGTAATC+TGG	+	chr1_2:77850006-77850025	None:intergenic	25.0%
!	AACACAGATAAATAACAGAT+TGG	+	chr1_2:77850105-77850124	None:intergenic	25.0%
!!	GTGTTTTACTTTGTTAGAAT+TGG	-	chr1_2:77850120-77850139	Msa0094570:CDS	25.0%
!!!	AGTAACAAAATTTTAGGTTG+TGG	+	chr1_2:77850173-77850192	None:intergenic	25.0%
!!	AATTTTGTTACTGATGTTTC+AGG	-	chr1_2:77850181-77850200	Msa0094570:CDS	25.0%
!!	ATTTTGTTACTGATGTTTCA+GGG	-	chr1_2:77850182-77850201	Msa0094570:CDS	25.0%
!!!	GAGATTAATCACTTTTAAAC+AGG	-	chr1_2:77850710-77850729	Msa0094570:five_prime_UTR	25.0%
	TAACACAGAATCAAAAATCG+GGG	-	chr1_2:77846602-77846621	Msa0094570:three_prime_UTR	30.0%
	TCGAAATTTCTGTTCAATCA+CGG	-	chr1_2:77846687-77846706	Msa0094570:three_prime_UTR	30.0%
	CTATTGTGAATTACGATTTG+TGG	-	chr1_2:77847090-77847109	Msa0094570:CDS	30.0%
!	TTTAAGTTTGTACTTGACGA+TGG	-	chr1_2:77847194-77847213	Msa0094570:intron	30.0%
!	GTATGTTACCTTTTCTTTAC+GGG	-	chr1_2:77847392-77847411	Msa0094570:intron	30.0%
	TACTTGGTTAATGTCTAATC+AGG	-	chr1_2:77847451-77847470	Msa0094570:intron	30.0%
	CTTTCTATGTAAGTAAGGAT+AGG	-	chr1_2:77847481-77847500	Msa0094570:intron	30.0%
	ATGTAAGTAAGGATAGGAAT+AGG	-	chr1_2:77847487-77847506	Msa0094570:intron	30.0%
	GATATTATAATCACCCTTGT+CGG	-	chr1_2:77847684-77847703	Msa0094570:intron	30.0%
!	GATGAGAAAGCATAAAAAAG+TGG	+	chr1_2:77847780-77847799	None:intergenic	30.0%
	AGAAATATGTGATTGCATTG+AGG	-	chr1_2:77847888-77847907	Msa0094570:intron	30.0%
	TGCCATTCAAAATAAAAGGA+GGG	+	chr1_2:77847937-77847956	None:intergenic	30.0%
	TTGCCATTCAAAATAAAAGG+AGG	+	chr1_2:77847938-77847957	None:intergenic	30.0%
!	TCCATTTTCATTGTTAGGAA+TGG	-	chr1_2:77848140-77848159	Msa0094570:intron	30.0%
	TCCATTCCTAACAATGAAAA+TGG	+	chr1_2:77848144-77848163	None:intergenic	30.0%
	CGTTTATATGGACAATTGAA+AGG	-	chr1_2:77848173-77848192	Msa0094570:intron	30.0%
	TGTCGTTAATCTATTACCAT+AGG	-	chr1_2:77848307-77848326	Msa0094570:intron	30.0%
	CCTGAAAATGACACAAATTA+AGG	+	chr1_2:77848384-77848403	None:intergenic	30.0%
!!!	CCTTAATTTGTGTCATTTTC+AGG	-	chr1_2:77848381-77848400	Msa0094570:intron	30.0%
	AATCTCATTGAAGTCAGTAA+CGG	+	chr1_2:77848408-77848427	None:intergenic	30.0%
	TTATACAACTGAGAGTTTGA+AGG	+	chr1_2:77848675-77848694	None:intergenic	30.0%
!	TTTTGAATTTGACAGGGAAT+CGG	+	chr1_2:77848788-77848807	None:intergenic	30.0%
	AGAAAACACTAAGAATACCT+TGG	-	chr1_2:77848857-77848876	Msa0094570:intron	30.0%
	AGAAAGAAGAAAAAAAGTCG+TGG	-	chr1_2:77849025-77849044	Msa0094570:intron	30.0%
	GAAAGAAGAAAAAAAGTCGT+GGG	-	chr1_2:77849026-77849045	Msa0094570:intron	30.0%
	ACTTATAAGTCCATGTCTTT+AGG	+	chr1_2:77849107-77849126	None:intergenic	30.0%
!	AATGATTTGTGCCATATTTG+TGG	-	chr1_2:77849291-77849310	Msa0094570:intron	30.0%
!	TATGGTTGACTTACTTGATT+TGG	+	chr1_2:77849410-77849429	None:intergenic	30.0%
!	AGTTTTTATCATATCCTCAC+TGG	-	chr1_2:77849447-77849466	Msa0094570:intron	30.0%
!!!	TGACTTGGTGTTAGAATTTT+TGG	-	chr1_2:77849529-77849548	Msa0094570:intron	30.0%
	TAACAGCTGTTATATGTTAG+AGG	+	chr1_2:77849614-77849633	None:intergenic	30.0%
!!	GCCTGTTATTTCTTGAATTT+CGG	-	chr1_2:77849643-77849662	Msa0094570:intron	30.0%
	ACCGAAATTCAAGAAATAAC+AGG	+	chr1_2:77849647-77849666	None:intergenic	30.0%
!!	ATTTCTTGAATTTCGGTGTT+AGG	-	chr1_2:77849650-77849669	Msa0094570:intron	30.0%
	TGTTAGTTGAGAGTTAAGTT+AGG	-	chr1_2:77849675-77849694	Msa0094570:intron	30.0%
!	TAACTTGATGGCATATTACA+TGG	-	chr1_2:77849953-77849972	Msa0094570:intron	30.0%
	TTAATAGTAATCTGGTGTGA+TGG	+	chr1_2:77849998-77850017	None:intergenic	30.0%
	TTAGAATTGGGATTACTTGA+AGG	-	chr1_2:77850133-77850152	Msa0094570:CDS	30.0%
!!!	AAATTTTAGGTTGTGGATAC+TGG	+	chr1_2:77850166-77850185	None:intergenic	30.0%
	AGGAGTCAAAAAACATAACT+TGG	+	chr1_2:77850339-77850358	None:intergenic	30.0%
	GAACATATCTTATAGTGCAT+CGG	+	chr1_2:77850426-77850445	None:intergenic	30.0%
	TAATGCATCTGTTGTGTAAA+CGG	-	chr1_2:77850669-77850688	Msa0094570:five_prime_UTR	30.0%
	CAAAAATCGGGGAAGAAAAA+TGG	-	chr1_2:77846613-77846632	Msa0094570:three_prime_UTR	35.0%
	TCTGTTCAATCACGGAAAAT+CGG	-	chr1_2:77846695-77846714	Msa0094570:three_prime_UTR	35.0%
	AACATCAATTAGACACGCTA+GGG	-	chr1_2:77846867-77846886	Msa0094570:three_prime_UTR	35.0%
	CAATCAAGTGATGATAGAAC+CGG	-	chr1_2:77847018-77847037	Msa0094570:intron	35.0%
	CTGGACAGAATAAAATTGTG+AGG	+	chr1_2:77847126-77847145	None:intergenic	35.0%
!	CTCACAATTTTATTCTGTCC+AGG	-	chr1_2:77847124-77847143	Msa0094570:CDS	35.0%
	GAACAATCGAGTGTACTAAA+TGG	-	chr1_2:77847222-77847241	Msa0094570:intron	35.0%
	CAAAAACTCATCGTTCACAA+AGG	+	chr1_2:77847319-77847338	None:intergenic	35.0%
!	ATGAGTTTTTGTCTACTTGC+AGG	-	chr1_2:77847328-77847347	Msa0094570:intron	35.0%
	CATTCAATCCCGTAAAGAAA+AGG	+	chr1_2:77847403-77847422	None:intergenic	35.0%
!!	GTTTGGTGTTTGTTAAGTCT+AGG	+	chr1_2:77847526-77847545	None:intergenic	35.0%
	GACTTAACAAACACCAAACA+TGG	-	chr1_2:77847527-77847546	Msa0094570:intron	35.0%
	AAAATTGCAGACTACAGATC+AGG	+	chr1_2:77847579-77847598	None:intergenic	35.0%
	CTTCTCCATACTTACAGATA+GGG	+	chr1_2:77847730-77847749	None:intergenic	35.0%
	TCTTCTCCATACTTACAGAT+AGG	+	chr1_2:77847731-77847750	None:intergenic	35.0%
	AATATGTGATTGCATTGAGG+TGG	-	chr1_2:77847891-77847910	Msa0094570:intron	35.0%
	CCATTCAAAATAAAAGGAGG+GGG	+	chr1_2:77847935-77847954	None:intergenic	35.0%
	GCCATTCAAAATAAAAGGAG+GGG	+	chr1_2:77847936-77847955	None:intergenic	35.0%
!	AAGGTTTAGGGTTCAAATCT+TGG	+	chr1_2:77848002-77848021	None:intergenic	35.0%
	GGAATGTATGTGCGTTTATA+TGG	-	chr1_2:77848161-77848180	Msa0094570:intron	35.0%
!	GGACAATTGAAAGGTTTTCA+TGG	-	chr1_2:77848182-77848201	Msa0094570:intron	35.0%
	CCTGAGAGAGAAAATACTTA+AGG	+	chr1_2:77848216-77848235	None:intergenic	35.0%
!	CCTTAAGTATTTTCTCTCTC+AGG	-	chr1_2:77848213-77848232	Msa0094570:intron	35.0%
!	AGTATTTTCTCTCTCAGGTA+TGG	-	chr1_2:77848218-77848237	Msa0094570:intron	35.0%
!	ATGCTAAAAACACTAGCCTA+TGG	+	chr1_2:77848326-77848345	None:intergenic	35.0%
	ATCTCATTGAAGTCAGTAAC+GGG	+	chr1_2:77848407-77848426	None:intergenic	35.0%
	CATAAATGCACTCAAGGAAA+TGG	+	chr1_2:77848436-77848455	None:intergenic	35.0%
	GATGAACATAAATGCACTCA+AGG	+	chr1_2:77848442-77848461	None:intergenic	35.0%
	TAATAAACCCAGACTCAGAT+AGG	-	chr1_2:77848531-77848550	Msa0094570:intron	35.0%
	TTATAGTGTGAATGTTGTGG+TGG	+	chr1_2:77848649-77848668	None:intergenic	35.0%
!!!	CCTGTTTCATGTTTTGAGTT+GGG	+	chr1_2:77848731-77848750	None:intergenic	35.0%
!!	ACCTGTTTCATGTTTTGAGT+TGG	+	chr1_2:77848732-77848751	None:intergenic	35.0%
	ACATAAATACATACCTCAGC+CGG	-	chr1_2:77848760-77848779	Msa0094570:intron	35.0%
	GTGATAATATGTTGTACTGC+AGG	+	chr1_2:77848921-77848940	None:intergenic	35.0%
!!	AAAAGTCGTGGGTTTGTTAA+AGG	-	chr1_2:77849037-77849056	Msa0094570:intron	35.0%
	ATAAGTCCATGTCTTTAGGT+GGG	+	chr1_2:77849103-77849122	None:intergenic	35.0%
	TATAAGTCCATGTCTTTAGG+TGG	+	chr1_2:77849104-77849123	None:intergenic	35.0%
!	GTCTGATGTTTTATGGTGTT+TGG	+	chr1_2:77849216-77849235	None:intergenic	35.0%
!	GCTCTTTGTCTGATGTTTTA+TGG	+	chr1_2:77849223-77849242	None:intergenic	35.0%
!!	TTGAGCTTGATAACCTTTTG+TGG	+	chr1_2:77849378-77849397	None:intergenic	35.0%
!!	ACTTACTTGATTTGGTGGAA+TGG	+	chr1_2:77849402-77849421	None:intergenic	35.0%
!!	ACTTTTTCTCTGTAGTTCTC+CGG	-	chr1_2:77849476-77849495	Msa0094570:intron	35.0%
	AGAGTTAAGTTAGGATTACC+TGG	-	chr1_2:77849684-77849703	Msa0094570:intron	35.0%
	GAGTTAAGTTAGGATTACCT+GGG	-	chr1_2:77849685-77849704	Msa0094570:intron	35.0%
!	TTGTGTTTTTCGTACTGTCT+AGG	+	chr1_2:77849717-77849736	None:intergenic	35.0%
	GTTAATAGCCTTCTTGAACT+TGG	-	chr1_2:77849740-77849759	Msa0094570:intron	35.0%
	AAGGTGAATGAGCAAAAAGT+TGG	-	chr1_2:77849763-77849782	Msa0094570:intron	35.0%
	GAATCTATTGCGAACAATCT+TGG	-	chr1_2:77850228-77850247	Msa0094570:intron	35.0%
	GAACAATCTTGGAGTTTCTT+TGG	-	chr1_2:77850239-77850258	Msa0094570:intron	35.0%
	TTGGACAACATGATAAGTGA+GGG	+	chr1_2:77850320-77850339	None:intergenic	35.0%
	CACTATAAGATATGTTCCGA+CGG	-	chr1_2:77850429-77850448	Msa0094570:intron	35.0%
	AGGCAAAGTAGAGCATATTA+AGG	+	chr1_2:77850487-77850506	None:intergenic	35.0%
	ACAGGTACGCATAAAAACTT+AGG	+	chr1_2:77850507-77850526	None:intergenic	35.0%
	TACCTGTGATTCTACATATG+CGG	-	chr1_2:77850520-77850539	Msa0094570:intron	35.0%
	ATTCTACATATGCGGACATA+AGG	-	chr1_2:77850528-77850547	Msa0094570:intron	35.0%
	ATAAGGAAAAGCTGTAGATC+TGG	-	chr1_2:77850545-77850564	Msa0094570:CDS	35.0%
	AATGCATCTGTTGTGTAAAC+GGG	-	chr1_2:77850670-77850689	Msa0094570:five_prime_UTR	35.0%
	AAATCGGGGAAGAAAAATGG+CGG	-	chr1_2:77846616-77846635	Msa0094570:three_prime_UTR	40.0%
	CAACATCAATTAGACACGCT+AGG	-	chr1_2:77846866-77846885	Msa0094570:three_prime_UTR	40.0%
	AATTAGACACGCTAGGGTTA+GGG	-	chr1_2:77846873-77846892	Msa0094570:three_prime_UTR	40.0%
	CATCACTTGATTGAAGAGCA+TGG	+	chr1_2:77847011-77847030	None:intergenic	40.0%
	AGAACCGGTCTTACTATTGA+CGG	-	chr1_2:77847033-77847052	Msa0094570:intron	40.0%
	AACACCGTCAATAGTAAGAC+CGG	+	chr1_2:77847040-77847059	None:intergenic	40.0%
	AAGTAAGGATAGGAATAGGC+TGG	-	chr1_2:77847491-77847510	Msa0094570:intron	40.0%
	TTTGTTAAGTCTAGGTCGGT+CGG	+	chr1_2:77847518-77847537	None:intergenic	40.0%
!	GGTGTTTGTTAAGTCTAGGT+CGG	+	chr1_2:77847522-77847541	None:intergenic	40.0%
	AACAAACACCAAACATGGCT+TGG	-	chr1_2:77847532-77847551	Msa0094570:intron	40.0%
	GATAGGGATGAGAATAAGTC+AGG	+	chr1_2:77847714-77847733	None:intergenic	40.0%
	CTCATCCCTATCTGTAAGTA+TGG	-	chr1_2:77847722-77847741	Msa0094570:intron	40.0%
!	AGGGGGCAACTACAATTTTA+CGG	+	chr1_2:77847918-77847937	None:intergenic	40.0%
!!!	CCCCCTCCTTTTATTTTGAA+TGG	-	chr1_2:77847932-77847951	Msa0094570:intron	40.0%
	TCATCTGCTAGCAAAACAAC+AGG	+	chr1_2:77848350-77848369	None:intergenic	40.0%
!	AGCCATGCAACGATTTTGTT+AGG	-	chr1_2:77848557-77848576	Msa0094570:intron	40.0%
	TTGGAGATTTACTTTCAGCG+AGG	+	chr1_2:77848609-77848628	None:intergenic	40.0%
!!	GGTTGGTGGAAAAGTATCTT+TGG	+	chr1_2:77848628-77848647	None:intergenic	40.0%
	CCCAACTCAAAACATGAAAC+AGG	-	chr1_2:77848728-77848747	Msa0094570:intron	40.0%
	AACATCTTGCAAAGTCTGAC+AGG	+	chr1_2:77848883-77848902	None:intergenic	40.0%
!	AGTGCTGGATCATGCTAATT+TGG	+	chr1_2:77848972-77848991	None:intergenic	40.0%
!	TGTTTTATGGTGTTTGGCCT+AGG	+	chr1_2:77849210-77849229	None:intergenic	40.0%
	GCAGTGCTTTGTATGGAATT+GGG	+	chr1_2:77849356-77849375	None:intergenic	40.0%
!	TTTTGTGGCAGTGCTTTGTA+TGG	+	chr1_2:77849363-77849382	None:intergenic	40.0%
!!	ATACAAAGCACTGCCACAAA+AGG	-	chr1_2:77849362-77849381	Msa0094570:intron	40.0%
!!	GGTTGACTTACTTGATTTGG+TGG	+	chr1_2:77849407-77849426	None:intergenic	40.0%
!!	GAAAAAGTACTGAACCAGTG+AGG	+	chr1_2:77849464-77849483	None:intergenic	40.0%
!!	TCAGAAGAGTGTTCATGACT+TGG	-	chr1_2:77849514-77849533	Msa0094570:intron	40.0%
	ATAGCCTTCTTGAACTTGGA+AGG	-	chr1_2:77849744-77849763	Msa0094570:intron	40.0%
	TTCACCTTCCAAGTTCAAGA+AGG	+	chr1_2:77849751-77849770	None:intergenic	40.0%
	TTACTGATGTTTCAGGGCAA+TGG	-	chr1_2:77850188-77850207	Msa0094570:CDS	40.0%
	AACATGATAAGTGAGGGAGA+GGG	+	chr1_2:77850314-77850333	None:intergenic	40.0%
	CTTGGACAACATGATAAGTG+AGG	+	chr1_2:77850321-77850340	None:intergenic	40.0%
	CAGGTCTGCAAAACAAGATA+AGG	+	chr1_2:77850359-77850378	None:intergenic	40.0%
	GCTATCTATCGCTAGTTCAA+GGG	+	chr1_2:77850641-77850660	None:intergenic	40.0%
	TGCTATCTATCGCTAGTTCA+AGG	+	chr1_2:77850642-77850661	None:intergenic	40.0%
!	ACGGGTTTTTCTCAGATTGT+TGG	-	chr1_2:77850688-77850707	Msa0094570:five_prime_UTR	40.0%
	AATCGGGGAAGAAAAATGGC+GGG	-	chr1_2:77846617-77846636	Msa0094570:three_prime_UTR	45.0%
	GAACTGAGAAGAACCTTGGA+GGG	+	chr1_2:77846812-77846831	None:intergenic	45.0%
	AGAACTGAGAAGAACCTTGG+AGG	+	chr1_2:77846813-77846832	None:intergenic	45.0%
	GTGAGAACTGAGAAGAACCT+TGG	+	chr1_2:77846816-77846835	None:intergenic	45.0%
	CAATTAGACACGCTAGGGTT+AGG	-	chr1_2:77846872-77846891	Msa0094570:three_prime_UTR	45.0%
	TTGATCTGCTTGATCGTCAG+CGG	+	chr1_2:77846988-77847007	None:intergenic	45.0%
	GGTCTTACTATTGACGGTGT+TGG	-	chr1_2:77847039-77847058	Msa0094570:intron	45.0%
	TCTGTCCAGGTTACTCTTGT+TGG	-	chr1_2:77847137-77847156	Msa0094570:intron	45.0%
	TCCAGGTTACTCTTGTTGGT+AGG	-	chr1_2:77847141-77847160	Msa0094570:intron	45.0%
	CCAGGTTACTCTTGTTGGTA+GGG	-	chr1_2:77847142-77847161	Msa0094570:intron	45.0%
	GGTAGGGTTTGCAACAAATC+TGG	-	chr1_2:77847158-77847177	Msa0094570:intron	45.0%
	TTTGTACTTGACGATGGCAC+TGG	-	chr1_2:77847200-77847219	Msa0094570:intron	45.0%
	GTGTTAGTCCAAGCCATGTT+TGG	+	chr1_2:77847543-77847562	None:intergenic	45.0%
!	TGGCTTGGACTAACACTTCA+AGG	-	chr1_2:77847547-77847566	Msa0094570:intron	45.0%
	GGACTAACACTTCAAGGCAT+AGG	-	chr1_2:77847553-77847572	Msa0094570:intron	45.0%
	TAAGTCAGGCTAACCGACAA+GGG	+	chr1_2:77847700-77847719	None:intergenic	45.0%
	ATAAGTCAGGCTAACCGACA+AGG	+	chr1_2:77847701-77847720	None:intergenic	45.0%
!	GGGGGCAACTACAATTTTAC+GGG	+	chr1_2:77847917-77847936	None:intergenic	45.0%
	AGCTCACTTGGTTGAGCAAA+GGG	+	chr1_2:77848037-77848056	None:intergenic	45.0%
	TAGCTCACTTGGTTGAGCAA+AGG	+	chr1_2:77848038-77848057	None:intergenic	45.0%
	AATGCACTCAAGGAAATGGC+TGG	+	chr1_2:77848432-77848451	None:intergenic	45.0%
	GGCTAATCCTATCTGAGTCT+GGG	+	chr1_2:77848541-77848560	None:intergenic	45.0%
	TGGCTAATCCTATCTGAGTC+TGG	+	chr1_2:77848542-77848561	None:intergenic	45.0%
	GGCCTAACAAAATCGTTGCA+TGG	+	chr1_2:77848562-77848581	None:intergenic	45.0%
	AGTGTGAATGTTGTGGTGGT+TGG	+	chr1_2:77848645-77848664	None:intergenic	45.0%
	TGGGTATGCTGCCACAAATA+TGG	+	chr1_2:77849305-77849324	None:intergenic	45.0%
	ATATTTGTGGCAGCATACCC+AGG	-	chr1_2:77849304-77849323	Msa0094570:intron	45.0%
!	TTGGGAGCATGTTGCTGATT+GGG	+	chr1_2:77849338-77849357	None:intergenic	45.0%
!	ATTGGGAGCATGTTGCTGAT+TGG	+	chr1_2:77849339-77849358	None:intergenic	45.0%
	GGCAGTGCTTTGTATGGAAT+TGG	+	chr1_2:77849357-77849376	None:intergenic	45.0%
	TTCTCCGGTCAGCAGAATAA+TGG	-	chr1_2:77849491-77849510	Msa0094570:intron	45.0%
	CTGACCATTATTCTGCTGAC+CGG	+	chr1_2:77849498-77849517	None:intergenic	45.0%
!!!	TTTTGGCTCTTCCCACAAAC+AGG	-	chr1_2:77849546-77849565	Msa0094570:intron	45.0%
	TGATGTTTCAGGGCAATGGA+GGG	-	chr1_2:77850192-77850211	Msa0094570:CDS	45.0%
	CAACATGATAAGTGAGGGAG+AGG	+	chr1_2:77850315-77850334	None:intergenic	45.0%
	AGACCTGCTCTTGATGTTCT+TGG	-	chr1_2:77850372-77850391	Msa0094570:CDS	45.0%
	CTACCAAGAACATCAAGAGC+AGG	+	chr1_2:77850378-77850397	None:intergenic	45.0%
!!	CTTGATGTTCTTGGTAGCGA+AGG	-	chr1_2:77850381-77850400	Msa0094570:intron	45.0%
	AGCGAAGGTCTCGTTTATGA+AGG	-	chr1_2:77850396-77850415	Msa0094570:intron	45.0%
	GTCCGCATATGTAGAATCAC+AGG	+	chr1_2:77850525-77850544	None:intergenic	45.0%
!!	ATATTTAATATCAAAATAAT+TGG	+	chr1_2:77846646-77846665	None:intergenic	5.0%
!	GTTACCGTCGAACTGACTCA+TGG	+	chr1_2:77846723-77846742	None:intergenic	50.0%
	ATGCCTTCTCAGGCCAATCA+AGG	-	chr1_2:77846767-77846786	Msa0094570:three_prime_UTR	50.0%
	AGAGGATTCACCGCCTTGAT+TGG	+	chr1_2:77846783-77846802	None:intergenic	50.0%
	ACACGCTAGGGTTAGGGTTT+AGG	-	chr1_2:77846879-77846898	Msa0094570:three_prime_UTR	50.0%
	CACGCTAGGGTTAGGGTTTA+GGG	-	chr1_2:77846880-77846899	Msa0094570:three_prime_UTR	50.0%
	CCCTACCAACAAGAGTAACC+TGG	+	chr1_2:77847145-77847164	None:intergenic	50.0%
	TCACGAACCTGCTGATGCAA+TGG	-	chr1_2:77847353-77847372	Msa0094570:intron	50.0%
!	TAACTAGTTTGGGAGGGGGA+GGG	+	chr1_2:77848062-77848081	None:intergenic	50.0%
!	AGGGGGTAACTAGTTTGGGA+GGG	+	chr1_2:77848068-77848087	None:intergenic	50.0%
!	CCAGAGGGGGTAACTAGTTT+GGG	+	chr1_2:77848072-77848091	None:intergenic	50.0%
	ACCAGAGGGGGTAACTAGTT+TGG	+	chr1_2:77848073-77848092	None:intergenic	50.0%
	GTGAATGTTGTGGTGGTTGG+TGG	+	chr1_2:77848642-77848661	None:intergenic	50.0%
	ATTTGACAGGGAATCGGCAC+CGG	+	chr1_2:77848782-77848801	None:intergenic	50.0%
	TTGCAAAGTCTGACAGGCCA+AGG	+	chr1_2:77848877-77848896	None:intergenic	50.0%
	CGCAGTACTTTGCTTAGTGC+TGG	+	chr1_2:77848987-77849006	None:intergenic	50.0%
!!	GCACTAAGCAAAGTACTGCG+AGG	-	chr1_2:77848987-77849006	Msa0094570:intron	50.0%
!	TGGGAGCATGTTGCTGATTG+GGG	+	chr1_2:77849337-77849356	None:intergenic	50.0%
	TACTGTCTAGGTCAAGTCCC+AGG	+	chr1_2:77849705-77849724	None:intergenic	50.0%
	CTGATGTTTCAGGGCAATGG+AGG	-	chr1_2:77850191-77850210	Msa0094570:CDS	50.0%
	GATGTTTCAGGGCAATGGAG+GGG	-	chr1_2:77850193-77850212	Msa0094570:intron	50.0%
	ATGTTTCAGGGCAATGGAGG+GGG	-	chr1_2:77850194-77850213	Msa0094570:intron	50.0%
	ATAAGTGAGGGAGAGGGAGA+TGG	+	chr1_2:77850308-77850327	None:intergenic	50.0%
	TGTTCCGACGGTTGACATCT+TGG	-	chr1_2:77850441-77850460	Msa0094570:intron	50.0%
	GGCACCATGAGTCAGTTCGA+CGG	-	chr1_2:77846716-77846735	Msa0094570:three_prime_UTR	55.0%
	CCTTCTCAGGCCAATCAAGG+CGG	-	chr1_2:77846770-77846789	Msa0094570:three_prime_UTR	55.0%
	ATCCTCTCTCACTCCCTCCA+AGG	-	chr1_2:77846796-77846815	Msa0094570:three_prime_UTR	55.0%
	AACCTTGGAGGGAGTGAGAG+AGG	+	chr1_2:77846801-77846820	None:intergenic	55.0%
	ACCTGCTGATGCAATGGCAG+TGG	-	chr1_2:77847359-77847378	Msa0094570:intron	55.0%
	TCCACTGCCATTGCATCAGC+AGG	+	chr1_2:77847363-77847382	None:intergenic	55.0%
!	AACTAGTTTGGGAGGGGGAG+GGG	+	chr1_2:77848061-77848080	None:intergenic	55.0%
!	GTAACTAGTTTGGGAGGGGG+AGG	+	chr1_2:77848063-77848082	None:intergenic	55.0%
!	GGGGTAACTAGTTTGGGAGG+GGG	+	chr1_2:77848066-77848085	None:intergenic	55.0%
!	GGGGGTAACTAGTTTGGGAG+GGG	+	chr1_2:77848067-77848086	None:intergenic	55.0%
!	GAGGGGGTAACTAGTTTGGG+AGG	+	chr1_2:77848069-77848088	None:intergenic	55.0%
	CCCAAACTAGTTACCCCCTC+TGG	-	chr1_2:77848069-77848088	Msa0094570:intron	55.0%
	GCTGCACCCACCTAAAGACA+TGG	-	chr1_2:77849094-77849113	Msa0094570:intron	55.0%
!	CTGATTGGGGATGCTAGCCT+GGG	+	chr1_2:77849324-77849343	None:intergenic	55.0%
	TGTTTCAGGGCAATGGAGGG+GGG	-	chr1_2:77850195-77850214	Msa0094570:intron	55.0%
	TCCGACGGTTGACATCTTGG+TGG	-	chr1_2:77850444-77850463	Msa0094570:intron	55.0%
	GCCACCAAGATGTCAACCGT+CGG	+	chr1_2:77850448-77850467	None:intergenic	55.0%
!	GGTTGACATCTTGGTGGCAG+AGG	-	chr1_2:77850450-77850469	Msa0094570:intron	55.0%
!	GACGGTAACGCCGCTTTCTC+CGG	-	chr1_2:77846734-77846753	Msa0094570:three_prime_UTR	60.0%
!	AGAAGGCATGAAACCGCCGC+CGG	+	chr1_2:77846756-77846775	None:intergenic	60.0%
	CGGCGGTTTCATGCCTTCTC+AGG	-	chr1_2:77846757-77846776	Msa0094570:three_prime_UTR	60.0%
!!	CCGCCTTGATTGGCCTGAGA+AGG	+	chr1_2:77846773-77846792	None:intergenic	60.0%
	GCTGATTGGGGATGCTAGCC+TGG	+	chr1_2:77849325-77849344	None:intergenic	60.0%
	AGGGAGAGGGAGATGGAGAG+GGG	+	chr1_2:77850301-77850320	None:intergenic	60.0%
	GAGGGAGAGGGAGATGGAGA+GGG	+	chr1_2:77850302-77850321	None:intergenic	60.0%
	TGAGGGAGAGGGAGATGGAG+AGG	+	chr1_2:77850303-77850322	None:intergenic	60.0%
!	GGTAACGCCGCTTTCTCCGG+CGG	-	chr1_2:77846737-77846756	Msa0094570:three_prime_UTR	65.0%
	GAAACCGCCGCCGGAGAAAG+CGG	+	chr1_2:77846747-77846766	None:intergenic	65.0%
	AGGGGGAGGGGTAGCTCACT+TGG	+	chr1_2:77848049-77848068	None:intergenic	65.0%
	GAGGGAGATGGAGAGGGGGA+TGG	+	chr1_2:77850296-77850315	None:intergenic	65.0%
	GGGAGAGGGAGATGGAGAGG+GGG	+	chr1_2:77850300-77850319	None:intergenic	65.0%
!	AACGCCGCTTTCTCCGGCGG+CGG	-	chr1_2:77846740-77846759	Msa0094570:three_prime_UTR	70.0%
!!	CAGGGAATCGGCACCGGCTG+AGG	+	chr1_2:77848776-77848795	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	77846579	77850778	77846579	ID=Msa0094570;Name=Msa0094570
chr1_2	mRNA	77846579	77850778	77846579	ID=Msa0094570-mRNA-1;Parent=Msa0094570;Name=Msa0094570-mRNA-1;_AED=0.16;_eAED=0.16;_QI=143\|1\|1\|1\|1\|1\|10\|323\|276
chr1_2	exon	77846579	77846983	77846579	ID=Msa0094570-mRNA-1:exon:27658;Parent=Msa0094570-mRNA-1
chr1_2	exon	77847086	77847154	77847086	ID=Msa0094570-mRNA-1:exon:27657;Parent=Msa0094570-mRNA-1
chr1_2	exon	77847790	77847866	77847790	ID=Msa0094570-mRNA-1:exon:27656;Parent=Msa0094570-mRNA-1
chr1_2	exon	77847942	77848040	77847942	ID=Msa0094570-mRNA-1:exon:27655;Parent=Msa0094570-mRNA-1
chr1_2	exon	77848876	77848954	77848876	ID=Msa0094570-mRNA-1:exon:27654;Parent=Msa0094570-mRNA-1
chr1_2	exon	77849123	77849200	77849123	ID=Msa0094570-mRNA-1:exon:27653;Parent=Msa0094570-mRNA-1
chr1_2	exon	77849966	77850007	77849966	ID=Msa0094570-mRNA-1:exon:27652;Parent=Msa0094570-mRNA-1
chr1_2	exon	77850114	77850211	77850114	ID=Msa0094570-mRNA-1:exon:27651;Parent=Msa0094570-mRNA-1
chr1_2	exon	77850286	77850396	77850286	ID=Msa0094570-mRNA-1:exon:27650;Parent=Msa0094570-mRNA-1
chr1_2	exon	77850540	77850778	77850540	ID=Msa0094570-mRNA-1:exon:27649;Parent=Msa0094570-mRNA-1
chr1_2	five_prime_UTR	77850636	77850778	77850636	ID=Msa0094570-mRNA-1:five_prime_utr;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77850540	77850635	77850540	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77850286	77850396	77850286	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77850114	77850211	77850114	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77849966	77850007	77849966	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77849123	77849200	77849123	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77848876	77848954	77848876	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77847942	77848040	77847942	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77847790	77847866	77847790	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77847086	77847154	77847086	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	CDS	77846902	77846983	77846902	ID=Msa0094570-mRNA-1:cds;Parent=Msa0094570-mRNA-1
chr1_2	three_prime_UTR	77846579	77846901	77846579	ID=Msa0094570-mRNA-1:three_prime_utr;Parent=Msa0094570-mRNA-1

Gene Sequence

>Msa0094570

ATGAGTCAGTTCGACGGTAACGCCGCTTTCTCCGGCGGCGGTTTCATGCCTTCTCAGGCCAATCAAGGCGGTGAATCCTCTCTCACTCCCTCCAAGAATCGCGAAAGTCAAACTTTGCTTCCGCTGACGATCAAGCAGATCAACCATGCTCTTCAATCAAGTGATGATAGAACCGGTCTTACTATTGACGGTGTTGGCGTTTACACTGTTACTCTTGTTGGTAGGGTTTGCAACAAATCTGGACAGATTACTGAATTTAAGTTTGTACTTGACGATGGCACTGGAACAATCGAGTGTACTAAATGGCTTCACGAACCTGCTGATGCAATGGCAGTGGAGAGTATCATGAATGGAATGTATGTGCGTTTATATGGACAATTGAAAGGTTTTCATGGTAAACAAACCTTAAGTATTTTCTCTCTCAGGCCCGTTACTGACTTCAATGAGATTGCCAGCCATTTCCTTGAGTGCATTTATGTTCATCTATATAATTCGAAGTTACAGCATACCCAGGCTAGCATCCCCAATCAGCAACATGCTCCCAATTCCATACAAAGCACTGCCACAAAAGGTTATCAAGCTCAAGCCATTCCACCAAATCAATTCTCCGGTCAGCAGAATAATGGTCAGAAGAGTGTTCATGACTTGGTGTTAGAATTTTTGGCTCTTCCCACAAACAGGGCAATGGAGGGGGGAATCTCTTGTGAATCTATTGCGAACAATCTTGGAGTTTCTTTGGATAAAGTCATACCTGCTCTTGATGTTCTTGGTAGCGAAGGTCTCGTTTATGAAGGTCTACCGATGCACTATAAGATATGTTCCGACGGTTGA

Protein sequence

>Msa0094570

MSQFDGNAAFSGGGFMPSQANQGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRTGLTIDGVGVYTVTLVGRVCNKSGQITEFKFVLDDGTGTIECTKWLHEPADAMAVESIMNGMYVRLYGQLKGFHGKQTLSIFSLRPVTDFNEIASHFLECIYVHLYNSKLQHTQASIPNQQHAPNSIQSTATKGYQAQAIPPNQFSGQQNNGQKSVHDLVLEFLALPTNRAMEGGISCESIANNLGVSLDKVIPALDVLGSEGLVYEGLPMHYKICSDG*