Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388340 | RHN82196.1 | 70.655 | 351 | 94 | 4 | 9 | 350 | 16 | 366 | 6.95e-162 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388340 | A0A396JV43 | 70.655 | 351 | 94 | 4 | 9 | 350 | 16 | 366 | 3.32e-162 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009180 | Msa0388340 | 0.804000 | 2.664673e-49 | -8.615850e-47 |
| Msa0010110 | Msa0388340 | 0.801500 | 8.743791e-49 | -8.615850e-47 |
| Msa0036140 | Msa0388340 | 0.821197 | 4.587941e-53 | -8.615850e-47 |
| Msa0044090 | Msa0388340 | 0.828520 | 8.589917e-55 | -8.615850e-47 |
| Msa0045790 | Msa0388340 | 0.800867 | 1.178077e-48 | -8.615850e-47 |
| Msa0051020 | Msa0388340 | 0.807031 | 6.164527e-50 | -8.615850e-47 |
| Msa0059840 | Msa0388340 | 0.806558 | 7.760534e-50 | -8.615850e-47 |
| Msa0079070 | Msa0388340 | 0.805143 | 1.538904e-49 | -8.615850e-47 |
| Msa0080090 | Msa0388340 | 0.811199 | 7.890701e-51 | -8.615850e-47 |
| Msa0083280 | Msa0388340 | 0.800061 | 1.719495e-48 | -8.615850e-47 |
| Msa0084080 | Msa0388340 | 0.804105 | 2.533740e-49 | -8.615850e-47 |
| Msa0084380 | Msa0388340 | 0.809429 | 1.900326e-50 | -8.615850e-47 |
| Msa0089750 | Msa0388340 | 0.982350 | 7.247339e-155 | -8.615850e-47 |
| Msa0101270 | Msa0388340 | 0.805660 | 1.199421e-49 | -8.615850e-47 |
| Msa0103770 | Msa0388340 | 0.803253 | 3.807379e-49 | -8.615850e-47 |
| Msa0104670 | Msa0388340 | 0.806494 | 8.006891e-50 | -8.615850e-47 |
| Msa0106710 | Msa0388340 | 0.800664 | 1.295859e-48 | -8.615850e-47 |
| Msa0108410 | Msa0388340 | 0.800971 | 1.122218e-48 | -8.615850e-47 |
| Msa0125650 | Msa0388340 | 0.807937 | 3.959302e-50 | -8.615850e-47 |
| Msa0140500 | Msa0388340 | -0.809739 | 1.630520e-50 | -8.615850e-47 |
| Msa0150860 | Msa0388340 | 0.835837 | 1.330081e-56 | -8.615850e-47 |
| Msa0173800 | Msa0388340 | 0.806576 | 7.691073e-50 | -8.615850e-47 |
| Msa0178740 | Msa0388340 | 0.958758 | 1.064802e-116 | -8.615850e-47 |
| Msa0183760 | Msa0388340 | 0.828585 | 8.282646e-55 | -8.615850e-47 |
| Msa0189040 | Msa0388340 | 0.811001 | 8.709132e-51 | -8.615850e-47 |
| Msa0211150 | Msa0388340 | 0.811653 | 6.285774e-51 | -8.615850e-47 |
| Msa0219590 | Msa0388340 | 0.817884 | 2.616137e-52 | -8.615850e-47 |
| Msa0221470 | Msa0388340 | 0.815972 | 7.029143e-52 | -8.615850e-47 |
| Msa0225100 | Msa0388340 | 0.808233 | 3.425087e-50 | -8.615850e-47 |
| Msa0225110 | Msa0388340 | 0.813337 | 2.693576e-51 | -8.615850e-47 |
| Msa0225220 | Msa0388340 | 0.805919 | 1.057963e-49 | -8.615850e-47 |
| Msa0365100 | Msa0388340 | 0.810838 | 9.446361e-51 | -8.615850e-47 |
| Msa0367870 | Msa0388340 | 0.818120 | 2.313570e-52 | -8.615850e-47 |
| Msa0381610 | Msa0388340 | -0.823796 | 1.142266e-53 | -8.615850e-47 |
| Msa0388340 | Msa0411390 | 0.816807 | 4.570744e-52 | -8.615850e-47 |
| Msa0388340 | Msa0427100 | 0.812299 | 4.546729e-51 | -8.615850e-47 |
| Msa0388340 | Msa0427120 | 0.820430 | 6.888593e-53 | -8.615850e-47 |
| Msa0388340 | Msa0455760 | 0.803623 | 3.191352e-49 | -8.615850e-47 |
| Msa0388340 | Msa0460590 | 0.804627 | 1.973000e-49 | -8.615850e-47 |
| Msa0388340 | Msa0471670 | 0.805160 | 1.526093e-49 | -8.615850e-47 |
| Msa0388340 | Msa0479170 | 0.804110 | 2.527633e-49 | -8.615850e-47 |
| Msa0388340 | Msa0531180 | 0.802793 | 4.739720e-49 | -8.615850e-47 |
| Msa0388340 | Msa0556430 | 0.817747 | 2.808691e-52 | -8.615850e-47 |
| Msa0388340 | Msa0572840 | 0.827396 | 1.600930e-54 | -8.615850e-47 |
| Msa0388340 | Msa0574390 | 0.820322 | 7.291978e-53 | -8.615850e-47 |
| Msa0388340 | Msa0642730 | 0.804165 | 2.462891e-49 | -8.615850e-47 |
| Msa0388340 | Msa0667770 | 0.810186 | 1.306375e-50 | -8.615850e-47 |
| Msa0388340 | Msa0680660 | 0.800037 | 1.739281e-48 | -8.615850e-47 |
| Msa0388340 | Msa0681250 | 0.803414 | 3.526325e-49 | -8.615850e-47 |
| Msa0388340 | Msa0681270 | 0.803680 | 3.106096e-49 | -8.615850e-47 |
| Msa0388340 | Msa0696540 | 0.835196 | 1.931265e-56 | -8.615850e-47 |
| Msa0388340 | Msa0707250 | 0.834831 | 2.386914e-56 | -8.615850e-47 |
| Msa0388340 | Msa0740510 | 0.810428 | 1.158493e-50 | -8.615850e-47 |
| Msa0388340 | Msa0763890 | 0.804097 | 2.544463e-49 | -8.615850e-47 |
| Msa0388340 | Msa0818060 | 0.814205 | 1.734824e-51 | -8.615850e-47 |
| Msa0388340 | Msa0820770 | 0.807239 | 5.570557e-50 | -8.615850e-47 |
| Msa0388340 | Msa0822730 | 0.802486 | 5.485021e-49 | -8.615850e-47 |
| Msa0388340 | Msa0831110 | 0.833477 | 5.214485e-56 | -8.615850e-47 |
| Msa0388340 | Msa0832340 | 0.826651 | 2.412947e-54 | -8.615850e-47 |
| Msa0388340 | Msa0833530 | 0.810549 | 1.090909e-50 | -8.615850e-47 |
| Msa0388340 | Msa0861090 | 0.808381 | 3.184683e-50 | -8.615850e-47 |
| Msa0388340 | Msa0898750 | 0.813697 | 2.245130e-51 | -8.615850e-47 |
| Msa0388340 | Msa0907950 | 0.823075 | 1.683389e-53 | -8.615850e-47 |
| Msa0388340 | Msa0909740 | 0.805947 | 1.043866e-49 | -8.615850e-47 |
| Msa0388340 | Msa0919860 | 0.819497 | 1.126029e-52 | -8.615850e-47 |
| Msa0388340 | Msa0928130 | 0.816814 | 4.554998e-52 | -8.615850e-47 |
| Msa0388340 | Msa0933760 | 0.806470 | 8.098088e-50 | -8.615850e-47 |
| Msa0388340 | Msa0963270 | 0.806326 | 8.686298e-50 | -8.615850e-47 |
| Msa0388340 | Msa0980200 | 0.824978 | 6.021115e-54 | -8.615850e-47 |
| Msa0388340 | Msa0997970 | 0.800148 | 1.650859e-48 | -8.615850e-47 |
| Msa0388340 | Msa1023500 | 0.804699 | 1.905233e-49 | -8.615850e-47 |
| Msa0388340 | Msa1034500 | 0.839565 | 1.468301e-57 | -8.615850e-47 |
| Msa0388340 | Msa1035960 | 0.800384 | 1.478253e-48 | -8.615850e-47 |
| Msa0388340 | Msa1036610 | 0.818912 | 1.530328e-52 | -8.615850e-47 |
| Msa0388340 | Msa1039020 | 0.800369 | 1.488262e-48 | -8.615850e-47 |
| Msa0388340 | Msa1089450 | 0.802418 | 5.664506e-49 | -8.615850e-47 |
| Msa0388340 | Msa1100130 | -0.813168 | 2.933488e-51 | -8.615850e-47 |
| Msa0388340 | Msa1101090 | 0.819590 | 1.072080e-52 | -8.615850e-47 |
| Msa0388340 | Msa1104560 | 0.801617 | 8.275905e-49 | -8.615850e-47 |
| Msa0388340 | Msa1144450 | 0.827431 | 1.570117e-54 | -8.615850e-47 |
| Msa0388340 | Msa1145810 | 0.819998 | 8.649260e-53 | -8.615850e-47 |
| Msa0388340 | Msa1162780 | 0.819075 | 1.404761e-52 | -8.615850e-47 |
| Msa0388340 | Msa1170760 | 0.812393 | 4.337549e-51 | -8.615850e-47 |
| Msa0388340 | Msa1175200 | 0.826133 | 3.206016e-54 | -8.615850e-47 |
| Msa0388340 | Msa1193170 | 0.801444 | 8.979094e-49 | -8.615850e-47 |
| Msa0388340 | Msa1204530 | 0.803765 | 2.981516e-49 | -8.615850e-47 |
| Msa0388340 | Msa1205280 | 0.834123 | 3.594746e-56 | -8.615850e-47 |
| Msa0388340 | Msa1211230 | -0.802770 | 4.791077e-49 | -8.615850e-47 |
| Msa0388340 | Msa1211420 | -0.803510 | 3.368860e-49 | -8.615850e-47 |
| Msa0388340 | Msa1213980 | 0.832540 | 8.917898e-56 | -8.615850e-47 |
| Msa0388340 | Msa1232700 | 0.815053 | 1.126022e-51 | -8.615850e-47 |
| Msa0388340 | Msa1232740 | 0.804628 | 1.972119e-49 | -8.615850e-47 |
| Msa0388340 | Msa1243870 | 0.802246 | 6.143914e-49 | -8.615850e-47 |
| Msa0388340 | Msa1246360 | 0.823438 | 1.385105e-53 | -8.615850e-47 |
| Msa0388340 | Msa1271130 | 0.800609 | 1.330024e-48 | -8.615850e-47 |
| Msa0388340 | Msa1277690 | 0.821379 | 4.166650e-53 | -8.615850e-47 |
| Msa0388340 | Msa1286800 | 0.806616 | 7.545140e-50 | -8.615850e-47 |
| Msa0388340 | Msa1291730 | 0.809027 | 2.317220e-50 | -8.615850e-47 |
| Msa0388340 | Msa1297230 | 0.821126 | 4.765081e-53 | -8.615850e-47 |
| Msa0388340 | Msa1305810 | 0.808527 | 2.964130e-50 | -8.615850e-47 |
| Msa0388340 | Msa1307560 | 0.801555 | 8.520592e-49 | -8.615850e-47 |
| Msa0388340 | Msa1308220 | 0.818308 | 2.097409e-52 | -8.615850e-47 |
| Msa0388340 | Msa1308870 | 0.830525 | 2.796357e-55 | -8.615850e-47 |
| Msa0388340 | Msa1313280 | 0.809262 | 2.064484e-50 | -8.615850e-47 |
| Msa0388340 | Msa1314650 | 0.829752 | 4.318457e-55 | -8.615850e-47 |
| Msa0388340 | Msa1325410 | -0.831108 | 2.012066e-55 | -8.615850e-47 |
| Msa0388340 | Msa1331000 | 0.812293 | 4.560067e-51 | -8.615850e-47 |
| Msa0388340 | Msa1333480 | 0.814877 | 1.231513e-51 | -8.615850e-47 |
| Msa0388340 | Msa1343430 | 0.801209 | 1.003144e-48 | -8.615850e-47 |
| Msa0388340 | Msa1346840 | 0.820213 | 7.726056e-53 | -8.615850e-47 |
| Msa0388340 | Msa1353980 | 0.809302 | 2.023809e-50 | -8.615850e-47 |
| Msa0388340 | Msa1385890 | 0.808440 | 3.093828e-50 | -8.615850e-47 |
| Msa0388340 | Msa1390700 | 0.817850 | 2.662792e-52 | -8.615850e-47 |
| Msa0388340 | Msa1392910 | 0.810241 | 1.271320e-50 | -8.615850e-47 |
| Msa0388340 | Msa1393570 | 0.831854 | 1.318453e-55 | -8.615850e-47 |
| Msa0388340 | Msa1395900 | 0.817288 | 3.564093e-52 | -8.615850e-47 |
| Msa0388340 | Msa1404300 | 0.806699 | 7.247610e-50 | -8.615850e-47 |
| Msa0388340 | Msa1407190 | 0.804509 | 2.088173e-49 | -8.615850e-47 |
| Msa0388340 | Msa1419690 | 0.804989 | 1.657127e-49 | -8.615850e-47 |
| Msa0388340 | Msa1425260 | 0.815466 | 9.114164e-52 | -8.615850e-47 |
| Msa0388340 | Msa1432130 | 0.807222 | 5.615290e-50 | -8.615850e-47 |
| Msa0388340 | Msa1437180 | 0.812513 | 4.082162e-51 | -8.615850e-47 |
| Msa0388340 | Msa1444510 | 0.824680 | 7.078971e-54 | -8.615850e-47 |
| Msa0388340 | Msa1445390 | -0.809428 | 1.901736e-50 | -8.615850e-47 |
| Msa0388340 | Msa1448560 | 0.829826 | 4.142197e-55 | -8.615850e-47 |
| Msa0388340 | Msa1449340 | -0.819118 | 1.373597e-52 | -8.615850e-47 |
| Msa0388340 | Msa1452710 | 0.800275 | 1.555433e-48 | -8.615850e-47 |
| Msa0388340 | Msa1458600 | 0.824946 | 6.128459e-54 | -8.615850e-47 |
| Msa0388340 | Msa1463900 | 0.851474 | 8.672018e-61 | -8.615850e-47 |
| Msa0388340 | Msa1466540 | 0.801706 | 7.934058e-49 | -8.615850e-47 |
| Msa0240900 | Msa0388340 | 0.837284 | 5.690385e-57 | -8.615850e-47 |
| Msa0241140 | Msa0388340 | 0.814367 | 1.597013e-51 | -8.615850e-47 |
| Msa0244640 | Msa0388340 | 0.809888 | 1.514297e-50 | -8.615850e-47 |
| Msa0266180 | Msa0388340 | 0.814088 | 1.841246e-51 | -8.615850e-47 |
| Msa0266200 | Msa0388340 | 0.807011 | 6.225416e-50 | -8.615850e-47 |
| Msa0267370 | Msa0388340 | 0.814769 | 1.301345e-51 | -8.615850e-47 |
| Msa0283330 | Msa0388340 | 0.810990 | 8.756742e-51 | -8.615850e-47 |
| Msa0287740 | Msa0388340 | 0.814606 | 1.413935e-51 | -8.615850e-47 |
| Msa0294060 | Msa0388340 | 0.801442 | 8.987147e-49 | -8.615850e-47 |
| Msa0315690 | Msa0388340 | 0.804555 | 2.042211e-49 | -8.615850e-47 |
| Msa0317970 | Msa0388340 | 0.826147 | 3.181784e-54 | -8.615850e-47 |
| Msa0318680 | Msa0388340 | 0.813366 | 2.654393e-51 | -8.615850e-47 |
| Msa0321620 | Msa0388340 | 0.828271 | 9.865034e-55 | -8.615850e-47 |
| Msa0336320 | Msa0388340 | 0.812527 | 4.054718e-51 | -8.615850e-47 |
| Msa0341540 | Msa0388340 | 0.804767 | 1.844266e-49 | -8.615850e-47 |
| Msa0342010 | Msa0388340 | 0.802998 | 4.298735e-49 | -8.615850e-47 |
| Msa0363790 | Msa0388340 | 0.813667 | 2.279132e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388340 | MtrunA17_Chr1g0207351 | 70.655 | 351 | 94 | 4 | 9 | 350 | 16 | 366 | 6.39e-166 | 467 |
| Msa0388340 | MtrunA17_Chr3g0093911 | 68.091 | 351 | 106 | 4 | 5 | 350 | 1 | 350 | 1.59e-159 | 450 |
| Msa0388340 | MtrunA17_Chr7g0252101 | 66.667 | 354 | 109 | 6 | 3 | 350 | 82 | 432 | 1.41e-152 | 436 |
| Msa0388340 | MtrunA17_Chr4g0075971 | 61.032 | 349 | 132 | 3 | 6 | 350 | 254 | 602 | 1.79e-130 | 385 |
| Msa0388340 | MtrunA17_Chr3g0077801 | 57.593 | 349 | 142 | 3 | 8 | 350 | 4 | 352 | 1.97e-129 | 374 |
| Msa0388340 | MtrunA17_Chr3g0077901 | 57.670 | 352 | 139 | 6 | 6 | 349 | 22 | 371 | 5.71e-127 | 369 |
| Msa0388340 | MtrunA17_Chr3g0077851 | 58.160 | 337 | 131 | 6 | 21 | 349 | 1 | 335 | 3.95e-123 | 357 |
| Msa0388340 | MtrunA17_Chr7g0243331 | 54.830 | 352 | 149 | 5 | 7 | 350 | 1 | 350 | 8.45e-120 | 349 |
| Msa0388340 | MtrunA17_Chr6g0488101 | 53.444 | 363 | 150 | 6 | 3 | 350 | 97 | 455 | 4.78e-118 | 349 |
| Msa0388340 | MtrunA17_Chr6g0488271 | 53.168 | 363 | 151 | 6 | 3 | 350 | 57 | 415 | 8.08e-118 | 347 |
| Msa0388340 | MtrunA17_Chr1g0209051 | 66.667 | 270 | 84 | 3 | 86 | 349 | 1 | 270 | 2.12e-116 | 338 |
| Msa0388340 | MtrunA17_Chr3g0112311 | 54.749 | 358 | 145 | 5 | 5 | 348 | 1 | 355 | 6.85e-115 | 337 |
| Msa0388340 | MtrunA17_Chr6g0452641 | 52.336 | 321 | 129 | 7 | 48 | 350 | 26 | 340 | 3.55e-88 | 268 |
| Msa0388340 | MtrunA17_Chr3g0122991 | 47.170 | 318 | 109 | 5 | 10 | 316 | 5 | 274 | 8.23e-83 | 253 |
| Msa0388340 | MtrunA17_Chr1g0202841 | 66.480 | 179 | 54 | 3 | 178 | 350 | 1 | 179 | 6.31e-74 | 226 |
| Msa0388340 | MtrunA17_Chr3g0123471 | 51.923 | 260 | 113 | 6 | 90 | 342 | 5 | 259 | 6.47e-72 | 224 |
| Msa0388340 | MtrunA17_Chr1g0206951 | 84.211 | 114 | 17 | 1 | 7 | 119 | 1 | 114 | 1.71e-64 | 200 |
| Msa0388340 | MtrunA17_Chr7g0243391 | 49.528 | 212 | 103 | 2 | 3 | 212 | 16 | 225 | 6.42e-54 | 177 |
| Msa0388340 | MtrunA17_Chr1g0187941 | 62.044 | 137 | 48 | 3 | 178 | 310 | 1 | 137 | 1.03e-46 | 155 |
| Msa0388340 | MtrunA17_Chr1g0196231 | 60.274 | 146 | 53 | 3 | 3 | 147 | 225 | 366 | 2.09e-45 | 159 |
| Msa0388340 | MtrunA17_Chr6g0486591 | 48.428 | 159 | 69 | 3 | 205 | 350 | 1 | 159 | 2.09e-39 | 137 |
| Msa0388340 | MtrunA17_Chr4g0075861 | 65.833 | 120 | 41 | 0 | 6 | 125 | 254 | 373 | 3.04e-38 | 140 |
| Msa0388340 | MtrunA17_Chr1g0209191 | 67.347 | 98 | 25 | 1 | 259 | 349 | 1 | 98 | 5.03e-36 | 126 |
| Msa0388340 | MtrunA17_Chr1g0196241 | 74.390 | 82 | 20 | 1 | 250 | 330 | 3 | 84 | 2.82e-33 | 119 |
| Msa0388340 | MtrunA17_Chr6g0459061 | 27.326 | 344 | 235 | 8 | 13 | 347 | 18 | 355 | 1.03e-26 | 108 |
| Msa0388340 | MtrunA17_Chr7g0238781 | 38.806 | 134 | 78 | 3 | 37 | 168 | 27 | 158 | 1.70e-18 | 81.6 |
| Msa0388340 | MtrunA17_Chr1g0209061 | 73.810 | 42 | 11 | 0 | 3 | 44 | 66 | 107 | 2.18e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCCTATTTCTAAAGTTAA+AGG | 0.132036 | 3_1:+92760411 | Msa0388340:CDS |
| GAACCTTTAACTTTAGAAAT+AGG | 0.154789 | 3_1:-92760414 | None:intergenic |
| AACCTTTAACTTTAGAAATA+GGG | 0.214014 | 3_1:-92760413 | None:intergenic |
| AATTTACTCTAGAAATTTCT+TGG | 0.228388 | 3_1:+92760170 | Msa0388340:CDS |
| TTTGAAGAAGTAAAGGTTCT+TGG | 0.278248 | 3_1:-92760197 | None:intergenic |
| AGTTTGCCAATAGTTTGATT+AGG | 0.302421 | 3_1:+92761141 | Msa0388340:three_prime_UTR |
| CTTTCATATCCCCACCTGTT+GGG | 0.307053 | 3_1:-92760888 | None:intergenic |
| GTTTGCCAATAGTTTGATTA+GGG | 0.321506 | 3_1:+92761142 | Msa0388340:three_prime_UTR |
| TTGGCAAACTAAAGGAAAAT+AGG | 0.333462 | 3_1:-92761128 | None:intergenic |
| AGACGTGCCTTGCTTGCTTT+TGG | 0.336224 | 3_1:+92760447 | Msa0388340:CDS |
| TCGAGCCCTAATCAAACTAT+TGG | 0.338523 | 3_1:-92761147 | None:intergenic |
| ATCAATCTCGAAATTTAGAT+TGG | 0.339092 | 3_1:+92760526 | Msa0388340:CDS |
| TTCCAGTTTGACGTAATTCA+TGG | 0.341057 | 3_1:-92760805 | None:intergenic |
| TTCAAGTTGTAGTGTGTATT+CGG | 0.358079 | 3_1:+92760941 | Msa0388340:CDS |
| GTGTAAAAGCAAAAGCTTCC+AGG | 0.365898 | 3_1:-92760696 | None:intergenic |
| AAAAGTTTATTGCTCGAAGA+TGG | 0.381429 | 3_1:+92760269 | Msa0388340:CDS |
| TTGAAGAAGTAAAGGTTCTT+GGG | 0.388728 | 3_1:-92760196 | None:intergenic |
| AGAGAGCCGTGAACTTCCTT+TGG | 0.390301 | 3_1:+92760059 | Msa0388340:CDS |
| AACCATGAATTACGTCAAAC+TGG | 0.393600 | 3_1:+92760803 | Msa0388340:CDS |
| GTCGTCAAAATCTAGTGTTT+TGG | 0.396017 | 3_1:-92760100 | None:intergenic |
| CTCCGAGGAATTTGTCTTGG+TGG | 0.398241 | 3_1:+92760476 | Msa0388340:CDS |
| TTACGTCAAACTGGAAACTT+TGG | 0.400584 | 3_1:+92760812 | Msa0388340:CDS |
| TTTATGATACAAAGGAAAAC+AGG | 0.417030 | 3_1:+92760023 | Msa0388340:intron |
| TTGGTCGGGTATGCAAATAA+AGG | 0.421092 | 3_1:-92760247 | None:intergenic |
| CAAGAAATTTGAAGAAGTAA+AGG | 0.425776 | 3_1:-92760204 | None:intergenic |
| AAAACACCAATCAGACTTGA+AGG | 0.428047 | 3_1:-92761021 | None:intergenic |
| TTTCTGGTGTGTGCAAGAAT+TGG | 0.430304 | 3_1:+92760133 | Msa0388340:CDS |
| TCAAATTTCTTGTCAACCTA+CGG | 0.433760 | 3_1:+92760215 | Msa0388340:CDS |
| CAAGTTCCTTCAAGTCTGAT+TGG | 0.438389 | 3_1:+92761015 | Msa0388340:CDS |
| ATGCATTGAGCAACCCCAAC+AGG | 0.449427 | 3_1:+92760874 | Msa0388340:CDS |
| ATTGTACACCTTGTTACCTA+TGG | 0.452529 | 3_1:+92761093 | Msa0388340:three_prime_UTR |
| CTGGTGTGTGCAAGAATTGG+AGG | 0.458932 | 3_1:+92760136 | Msa0388340:CDS |
| TACGTCAAACTGGAAACTTT+GGG | 0.462690 | 3_1:+92760813 | Msa0388340:CDS |
| TTGGGTTGCTTATTCGAGAA+TGG | 0.468267 | 3_1:+92760545 | Msa0388340:CDS |
| TCAATCTCGAAATTTAGATT+GGG | 0.470050 | 3_1:+92760527 | Msa0388340:CDS |
| AAAGTTTATTGCTCGAAGAT+GGG | 0.471695 | 3_1:+92760270 | Msa0388340:CDS |
| ACTAGGTTGGTTAATTGTGA+TGG | 0.475319 | 3_1:+92760717 | Msa0388340:CDS |
| TCAAACTATTGGCAAACTAA+AGG | 0.484446 | 3_1:-92761136 | None:intergenic |
| CAAATTTCTTGTCAACCTAC+GGG | 0.493687 | 3_1:+92760216 | Msa0388340:CDS |
| TGAGAAAATAATACATCGAT+TGG | 0.494657 | 3_1:+92761212 | Msa0388340:three_prime_UTR |
| CTAAAACTGAAGAGTACTCC+TGG | 0.499046 | 3_1:+92760678 | Msa0388340:CDS |
| ATTACACTTTCAACTCCTCA+TGG | 0.500145 | 3_1:+92760990 | Msa0388340:CDS |
| ACCTTTAACTTTAGAAATAG+GGG | 0.506391 | 3_1:-92760412 | None:intergenic |
| GCTTTCATATCCCCACCTGT+TGG | 0.512470 | 3_1:-92760889 | None:intergenic |
| TTTCATATCCCCACCTGTTG+GGG | 0.516850 | 3_1:-92760887 | None:intergenic |
| CAAAGGAAAACAGGTGAAGA+TGG | 0.519464 | 3_1:+92760032 | Msa0388340:intron |
| AGAGGTAATTGTTGACTTCG+TGG | 0.525520 | 3_1:+92760575 | Msa0388340:CDS |
| AAGCTCCGAGGAATTTGTCT+TGG | 0.528013 | 3_1:+92760473 | Msa0388340:CDS |
| TCACTGACAAGGCCAACATA+GGG | 0.528379 | 3_1:+92760622 | Msa0388340:CDS |
| CTAGGTTGGTTAATTGTGAT+GGG | 0.532467 | 3_1:+92760718 | Msa0388340:CDS |
| AGTTGTAGTGTGTATTCGGT+TGG | 0.533748 | 3_1:+92760945 | Msa0388340:CDS |
| ACGAAGTCAACAATTACCTC+TGG | 0.541358 | 3_1:-92760573 | None:intergenic |
| CAAGCTGAGCACCCCTATGT+TGG | 0.542473 | 3_1:-92760634 | None:intergenic |
| GTCACTGACAAGGCCAACAT+AGG | 0.554026 | 3_1:+92760621 | Msa0388340:CDS |
| GCACATCCAAAGGAAGTTCA+CGG | 0.557808 | 3_1:-92760065 | None:intergenic |
| AAGTTTATTGCTCGAAGATG+GGG | 0.576744 | 3_1:+92760271 | Msa0388340:CDS |
| TCCGCTAGAAATCGTAACAT+AGG | 0.576857 | 3_1:-92760313 | None:intergenic |
| TGGTGTGTGCAAGAATTGGA+GGG | 0.582905 | 3_1:+92760137 | Msa0388340:CDS |
| AACCACCAAGACAAATTCCT+CGG | 0.591881 | 3_1:-92760478 | None:intergenic |
| TAGGGCTCGAAAACTTGTAG+TGG | 0.591929 | 3_1:+92761160 | Msa0388340:three_prime_UTR |
| CATTGAGCAACCCCAACAGG+TGG | 0.595743 | 3_1:+92760877 | Msa0388340:CDS |
| ACACACCAGAAAATTGAAAG+TGG | 0.598319 | 3_1:-92760122 | None:intergenic |
| GCCTATGTTACGATTTCTAG+CGG | 0.604035 | 3_1:+92760312 | Msa0388340:CDS |
| ATGATATCAAGCACATCCAA+AGG | 0.608076 | 3_1:-92760075 | None:intergenic |
| GCAAACTAAAGGAAAATAGG+TGG | 0.611184 | 3_1:-92761125 | None:intergenic |
| TAGGTGGAAACACAGACCAT+AGG | 0.616833 | 3_1:-92761109 | None:intergenic |
| ATTGAGCAACCCCAACAGGT+GGG | 0.636644 | 3_1:+92760878 | Msa0388340:CDS |
| TTCGAGAATGGAAGATCCAG+AGG | 0.642137 | 3_1:+92760557 | Msa0388340:CDS |
| AACACAGACCATAGGTAACA+AGG | 0.645089 | 3_1:-92761101 | None:intergenic |
| CACTGACAAGGCCAACATAG+GGG | 0.655325 | 3_1:+92760623 | Msa0388340:CDS |
| TTGAGCAACCCCAACAGGTG+GGG | 0.661540 | 3_1:+92760879 | Msa0388340:CDS |
| ATAAAGGAAAATGATCCCGT+AGG | 0.662758 | 3_1:-92760231 | None:intergenic |
| AATATATGTTGTCACTGACA+AGG | 0.674972 | 3_1:+92760611 | Msa0388340:CDS |
| TTGAAGGAACTTGTTCCATG+AGG | 0.687755 | 3_1:-92761005 | None:intergenic |
| AAATCGTAACATAGGCAGAG+CGG | 0.737024 | 3_1:-92760305 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTGTTAATTTTTATG+TGG | + | chr3_1:92759752-92759771 | Msa0388340:intron | 10.0% |
| !! | TATCATAAAATGAAAATATT+AGG | - | chr3_1:92760012-92760031 | None:intergenic | 10.0% |
| !!! | TGAGTTTTTAAAATTCATTA+AGG | + | chr3_1:92758401-92758420 | Msa0388340:intron | 15.0% |
| !!! | AAAGTTTGCAAAATATTTTT+TGG | - | chr3_1:92758934-92758953 | None:intergenic | 15.0% |
| !!! | TATTTGTTTTTTAGGTTTAA+TGG | - | chr3_1:92759058-92759077 | None:intergenic | 15.0% |
| !! | TACTAATAAAACTGAAAATT+CGG | - | chr3_1:92759434-92759453 | None:intergenic | 15.0% |
| !!! | AACTAAAAGCATTAAATATT+AGG | - | chr3_1:92759734-92759753 | None:intergenic | 15.0% |
| !!! | ATTTTCATTTTATGATACAA+AGG | + | chr3_1:92760015-92760034 | Msa0388340:intron | 15.0% |
| !!! | AAATATTTTTTGGTTCAAGA+CGG | - | chr3_1:92758924-92758943 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTAATGGATAAT+GGG | - | chr3_1:92759050-92759069 | None:intergenic | 20.0% |
| !!! | TTTTTAGGTTTAATGGATAA+TGG | - | chr3_1:92759051-92759070 | None:intergenic | 20.0% |
| !!! | TTTTCTCATTATTTTGATCA+TGG | - | chr3_1:92759819-92759838 | None:intergenic | 20.0% |
| !!! | ATATGTATTTTACGTTGATA+TGG | + | chr3_1:92759887-92759906 | Msa0388340:intron | 20.0% |
| !!! | AATTTACTCTAGAAATTTCT+TGG | + | chr3_1:92760170-92760189 | Msa0388340:CDS | 20.0% |
| !! | TCCATTTACAAGAATAAAAA+AGG | + | chr3_1:92760380-92760399 | Msa0388340:CDS | 20.0% |
| !!! | ACCTTTTTTATTCTTGTAAA+TGG | - | chr3_1:92760384-92760403 | None:intergenic | 20.0% |
| !! | ATTTACAAGAATAAAAAAGG+TGG | + | chr3_1:92760383-92760402 | Msa0388340:CDS | 20.0% |
| !!! | AACCTTTAACTTTAGAAATA+GGG | - | chr3_1:92760416-92760435 | None:intergenic | 20.0% |
| !!! | GTACACATTACATATTTTAT+TGG | - | chr3_1:92760769-92760788 | None:intergenic | 20.0% |
| ! | AAAATTCATTAAGGATTACC+AGG | + | chr3_1:92758410-92758429 | Msa0388340:intron | 25.0% |
| ! | TTATACGAATTATTCTAACC+TGG | - | chr3_1:92758431-92758450 | None:intergenic | 25.0% |
| !!! | AGAGCATACAAGTTTAATTT+TGG | + | chr3_1:92758512-92758531 | Msa0388340:intron | 25.0% |
| !!! | GAGCATACAAGTTTAATTTT+GGG | + | chr3_1:92758513-92758532 | Msa0388340:intron | 25.0% |
| ! | AATGATAAATTACTAACCAG+TGG | - | chr3_1:92758595-92758614 | None:intergenic | 25.0% |
| ! | TTGAAGAAGAACTAAATTGA+TGG | + | chr3_1:92758805-92758824 | Msa0388340:intron | 25.0% |
| !! | TTTTTGATGTAATGAACTGA+AGG | + | chr3_1:92758834-92758853 | Msa0388340:intron | 25.0% |
| ! | CAACTAAAAGAAATTGTCAT+AGG | + | chr3_1:92758967-92758986 | Msa0388340:intron | 25.0% |
| ! | AACCTAAAAAACAAATACCA+TGG | + | chr3_1:92759061-92759080 | Msa0388340:intron | 25.0% |
| !!! | TTCCATGGTATTTGTTTTTT+AGG | - | chr3_1:92759066-92759085 | None:intergenic | 25.0% |
| ! | ATAAAGAATCCTAACAGAAT+GGG | - | chr3_1:92759164-92759183 | None:intergenic | 25.0% |
| ! | AATAAAGAATCCTAACAGAA+TGG | - | chr3_1:92759165-92759184 | None:intergenic | 25.0% |
| ! | AACTTCATTGTATTTATGAC+GGG | - | chr3_1:92759307-92759326 | None:intergenic | 25.0% |
| ! | CAACTTCATTGTATTTATGA+CGG | - | chr3_1:92759308-92759327 | None:intergenic | 25.0% |
| !! | TCTGTCTTTGATAACATAAA+TGG | + | chr3_1:92759335-92759354 | Msa0388340:intron | 25.0% |
| !!! | TAGCATCTTTTATTGATTCT+TGG | + | chr3_1:92759593-92759612 | Msa0388340:intron | 25.0% |
| !!! | ACCTTTTCATTTTTCTATGT+TGG | + | chr3_1:92759682-92759701 | Msa0388340:intron | 25.0% |
| !!! | CCTTTTCATTTTTCTATGTT+GGG | + | chr3_1:92759683-92759702 | Msa0388340:intron | 25.0% |
| !!! | CTTTTCATTTTTCTATGTTG+GGG | + | chr3_1:92759684-92759703 | Msa0388340:intron | 25.0% |
| !!! | ATCTATTGTTTGCTATACAT+TGG | + | chr3_1:92759787-92759806 | Msa0388340:intron | 25.0% |
| ! | AAATAAACTACTGACAAGAA+AGG | + | chr3_1:92759836-92759855 | Msa0388340:intron | 25.0% |
| ! | AATAAACTACTGACAAGAAA+GGG | + | chr3_1:92759837-92759856 | Msa0388340:intron | 25.0% |
| !!! | GTTGATATGGATTTTTGTTT+GGG | + | chr3_1:92759900-92759919 | Msa0388340:intron | 25.0% |
| !!! | TTGATATGGATTTTTGTTTG+GGG | + | chr3_1:92759901-92759920 | Msa0388340:intron | 25.0% |
| ! | TTTATGATACAAAGGAAAAC+AGG | + | chr3_1:92760023-92760042 | Msa0388340:intron | 25.0% |
| ! | CAAGAAATTTGAAGAAGTAA+AGG | - | chr3_1:92760207-92760226 | None:intergenic | 25.0% |
| !! | ACCTTTAACTTTAGAAATAG+GGG | - | chr3_1:92760415-92760434 | None:intergenic | 25.0% |
| !! | GAACCTTTAACTTTAGAAAT+AGG | - | chr3_1:92760417-92760436 | None:intergenic | 25.0% |
| ! | ATCAATCTCGAAATTTAGAT+TGG | + | chr3_1:92760526-92760545 | Msa0388340:CDS | 25.0% |
| ! | TCAATCTCGAAATTTAGATT+GGG | + | chr3_1:92760527-92760546 | Msa0388340:CDS | 25.0% |
| !! | TTTTAGACATCAACATTTTG+AGG | + | chr3_1:92761040-92761059 | Msa0388340:CDS | 25.0% |
| ! | TGAGAAAATAATACATCGAT+TGG | + | chr3_1:92761212-92761231 | Msa0388340:three_prime_UTR | 25.0% |
| TAATTCGTATAAGTCCTGAA+AGG | + | chr3_1:92758439-92758458 | Msa0388340:intron | 30.0% | |
| ACAAACCAAATATGGCATTA+CGG | - | chr3_1:92758701-92758720 | None:intergenic | 30.0% | |
| ACATATAGAACTATGGTTGA+TGG | - | chr3_1:92758726-92758745 | None:intergenic | 30.0% | |
| ATCAATTGATCAAGCAAACT+TGG | - | chr3_1:92758759-92758778 | None:intergenic | 30.0% | |
| ! | ACTGAAGGAGTCTATATTTT+TGG | + | chr3_1:92758849-92758868 | Msa0388340:intron | 30.0% |
| !!! | AGGAGTCTATATTTTTGGTT+AGG | + | chr3_1:92758854-92758873 | Msa0388340:intron | 30.0% |
| ! | TGTATTCGGCTGATAATTTT+TGG | + | chr3_1:92759024-92759043 | Msa0388340:intron | 30.0% |
| AGATAATGTCATAAGAGGAT+GGG | - | chr3_1:92759224-92759243 | None:intergenic | 30.0% | |
| TAGATAATGTCATAAGAGGA+TGG | - | chr3_1:92759225-92759244 | None:intergenic | 30.0% | |
| GAGATAGATAATGTCATAAG+AGG | - | chr3_1:92759229-92759248 | None:intergenic | 30.0% | |
| TATCCTATAAAGAGATAGCA+AGG | - | chr3_1:92759259-92759278 | None:intergenic | 30.0% | |
| TGCGAAGAAAAACAATAGAA+GGG | - | chr3_1:92759393-92759412 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTCACACGATTGTA+AGG | + | chr3_1:92759512-92759531 | Msa0388340:intron | 30.0% |
| ! | TTTTTCTCACACGATTGTAA+GGG | + | chr3_1:92759513-92759532 | Msa0388340:intron | 30.0% |
| !!! | TGTTTTTTCCTCACTACTTT+AGG | + | chr3_1:92759549-92759568 | Msa0388340:intron | 30.0% |
| !!! | GTTTTTTCCTCACTACTTTA+GGG | + | chr3_1:92759550-92759569 | Msa0388340:intron | 30.0% |
| CCCAACATAGAAAAATGAAA+AGG | - | chr3_1:92759686-92759705 | None:intergenic | 30.0% | |
| ! | CGTTGATATGGATTTTTGTT+TGG | + | chr3_1:92759899-92759918 | Msa0388340:intron | 30.0% |
| !! | ATTTTTGTTTGGGGAAAATG+CGG | + | chr3_1:92759910-92759929 | Msa0388340:intron | 30.0% |
| TTGAAGAAGTAAAGGTTCTT+GGG | - | chr3_1:92760199-92760218 | None:intergenic | 30.0% | |
| TTTGAAGAAGTAAAGGTTCT+TGG | - | chr3_1:92760200-92760219 | None:intergenic | 30.0% | |
| TCAAATTTCTTGTCAACCTA+CGG | + | chr3_1:92760215-92760234 | Msa0388340:CDS | 30.0% | |
| ! | TCTTCGAGCAATAAACTTTT+TGG | - | chr3_1:92760269-92760288 | None:intergenic | 30.0% |
| AAAAGTTTATTGCTCGAAGA+TGG | + | chr3_1:92760269-92760288 | Msa0388340:CDS | 30.0% | |
| AAAGTTTATTGCTCGAAGAT+GGG | + | chr3_1:92760270-92760289 | Msa0388340:CDS | 30.0% | |
| !! | TTCTAGCGGATATTTTATCA+TGG | + | chr3_1:92760326-92760345 | Msa0388340:CDS | 30.0% |
| !! | ACCCCTATTTCTAAAGTTAA+AGG | + | chr3_1:92760411-92760430 | Msa0388340:CDS | 30.0% |
| AATATATGTTGTCACTGACA+AGG | + | chr3_1:92760611-92760630 | Msa0388340:CDS | 30.0% | |
| !! | TTCAAGTTGTAGTGTGTATT+CGG | + | chr3_1:92760941-92760960 | Msa0388340:CDS | 30.0% |
| TTGGCAAACTAAAGGAAAAT+AGG | - | chr3_1:92761131-92761150 | None:intergenic | 30.0% | |
| TCAAACTATTGGCAAACTAA+AGG | - | chr3_1:92761139-92761158 | None:intergenic | 30.0% | |
| AGTTTGCCAATAGTTTGATT+AGG | + | chr3_1:92761141-92761160 | Msa0388340:three_prime_UTR | 30.0% | |
| GTTTGCCAATAGTTTGATTA+GGG | + | chr3_1:92761142-92761161 | Msa0388340:three_prime_UTR | 30.0% | |
| ! | AGCGTGAAATGATTTTGCTT+TGG | - | chr3_1:92758555-92758574 | None:intergenic | 35.0% |
| GTGTTCGACATATAGAACTA+TGG | - | chr3_1:92758733-92758752 | None:intergenic | 35.0% | |
| CTTGAGAAACTAATGTCTAC+CGG | + | chr3_1:92758892-92758911 | Msa0388340:intron | 35.0% | |
| ATTATCAGCCGAATACAATG+AGG | - | chr3_1:92759021-92759040 | None:intergenic | 35.0% | |
| AAACAAATACCATGGAACGA+TGG | + | chr3_1:92759069-92759088 | Msa0388340:intron | 35.0% | |
| AGGAGTGAAAAAAATGGTGT+AGG | - | chr3_1:92759100-92759119 | None:intergenic | 35.0% | |
| ! | GTATGCTGAGTTGGAAAAAA+GGG | - | chr3_1:92759190-92759209 | None:intergenic | 35.0% |
| ! | AGTATGCTGAGTTGGAAAAA+AGG | - | chr3_1:92759191-92759210 | None:intergenic | 35.0% |
| CAATAGAAGGGAATTACGAA+GGG | - | chr3_1:92759381-92759400 | None:intergenic | 35.0% | |
| ACAATAGAAGGGAATTACGA+AGG | - | chr3_1:92759382-92759401 | None:intergenic | 35.0% | |
| CTGCGAAGAAAAACAATAGA+AGG | - | chr3_1:92759394-92759413 | None:intergenic | 35.0% | |
| ACGATTGTAAGGGAAATTCA+TGG | + | chr3_1:92759523-92759542 | Msa0388340:intron | 35.0% | |
| ! | TTATTTCTCACATGACTGCA+GGG | + | chr3_1:92759624-92759643 | Msa0388340:intron | 35.0% |
| ! | ATTTTTCTATGTTGGGGAGT+AGG | + | chr3_1:92759690-92759709 | Msa0388340:intron | 35.0% |
| ! | TTTTTCTATGTTGGGGAGTA+GGG | + | chr3_1:92759691-92759710 | Msa0388340:intron | 35.0% |
| AAGGGAAAAAAAGAGAGAAG+TGG | + | chr3_1:92759855-92759874 | Msa0388340:intron | 35.0% | |
| ATGATATCAAGCACATCCAA+AGG | - | chr3_1:92760078-92760097 | None:intergenic | 35.0% | |
| ! | GTCGTCAAAATCTAGTGTTT+TGG | - | chr3_1:92760103-92760122 | None:intergenic | 35.0% |
| ACACACCAGAAAATTGAAAG+TGG | - | chr3_1:92760125-92760144 | None:intergenic | 35.0% | |
| CAAATTTCTTGTCAACCTAC+GGG | + | chr3_1:92760216-92760235 | Msa0388340:CDS | 35.0% | |
| ATAAAGGAAAATGATCCCGT+AGG | - | chr3_1:92760234-92760253 | None:intergenic | 35.0% | |
| !! | GAGCAATAAACTTTTTGGTC+GGG | - | chr3_1:92760264-92760283 | None:intergenic | 35.0% |
| !! | CGAGCAATAAACTTTTTGGT+CGG | - | chr3_1:92760265-92760284 | None:intergenic | 35.0% |
| AAGTTTATTGCTCGAAGATG+GGG | + | chr3_1:92760271-92760290 | Msa0388340:CDS | 35.0% | |
| !! | TAGCGGATATTTTATCATGG+CGG | + | chr3_1:92760329-92760348 | Msa0388340:CDS | 35.0% |
| !! | GAAGCTTTTGCTTTTACACT+AGG | + | chr3_1:92760700-92760719 | Msa0388340:CDS | 35.0% |
| !! | CTTTTGCTTTTACACTAGGT+TGG | + | chr3_1:92760704-92760723 | Msa0388340:CDS | 35.0% |
| !! | ACTAGGTTGGTTAATTGTGA+TGG | + | chr3_1:92760717-92760736 | Msa0388340:CDS | 35.0% |
| !! | CTAGGTTGGTTAATTGTGAT+GGG | + | chr3_1:92760718-92760737 | Msa0388340:CDS | 35.0% |
| AACCATGAATTACGTCAAAC+TGG | + | chr3_1:92760803-92760822 | Msa0388340:CDS | 35.0% | |
| TTCCAGTTTGACGTAATTCA+TGG | - | chr3_1:92760808-92760827 | None:intergenic | 35.0% | |
| TTACGTCAAACTGGAAACTT+TGG | + | chr3_1:92760812-92760831 | Msa0388340:CDS | 35.0% | |
| TACGTCAAACTGGAAACTTT+GGG | + | chr3_1:92760813-92760832 | Msa0388340:CDS | 35.0% | |
| ATTACACTTTCAACTCCTCA+TGG | + | chr3_1:92760990-92761009 | Msa0388340:CDS | 35.0% | |
| AAAACACCAATCAGACTTGA+AGG | - | chr3_1:92761024-92761043 | None:intergenic | 35.0% | |
| ATTGTACACCTTGTTACCTA+TGG | + | chr3_1:92761093-92761112 | Msa0388340:three_prime_UTR | 35.0% | |
| GCAAACTAAAGGAAAATAGG+TGG | - | chr3_1:92761128-92761147 | None:intergenic | 35.0% | |
| AAATACTCGTCATGCCTTTC+AGG | - | chr3_1:92758456-92758475 | None:intergenic | 40.0% | |
| GCATGACGAGTATTTAAACC+TGG | + | chr3_1:92758461-92758480 | Msa0388340:intron | 40.0% | |
| TCATTACTCTTGCTTTGACC+AGG | - | chr3_1:92758482-92758501 | None:intergenic | 40.0% | |
| AATTACTAACCAGTGGTCTC+AGG | - | chr3_1:92758588-92758607 | None:intergenic | 40.0% | |
| ! | TCAACGTATGAGAAGTGCAA+TGG | - | chr3_1:92758620-92758639 | None:intergenic | 40.0% |
| AAATATGGCATTACGGCATG+TGG | - | chr3_1:92758694-92758713 | None:intergenic | 40.0% | |
| ACATGCCGTAATGCCATATT+TGG | + | chr3_1:92758693-92758712 | Msa0388340:intron | 40.0% | |
| ! | TGATGGCGACAAACCAAATA+TGG | - | chr3_1:92758709-92758728 | None:intergenic | 40.0% |
| ! | CGGTAGACATTAGTTTCTCA+AGG | - | chr3_1:92758894-92758913 | None:intergenic | 40.0% |
| AGACTCCTCCTCATTGTATT+CGG | + | chr3_1:92759010-92759029 | Msa0388340:intron | 40.0% | |
| GAGGTGAGGAGTGAAAAAAA+TGG | - | chr3_1:92759106-92759125 | None:intergenic | 40.0% | |
| ! | GAATGAGAAGTATGCTGAGT+TGG | - | chr3_1:92759199-92759218 | None:intergenic | 40.0% |
| ! | GCACCTTGCTATCTCTTTAT+AGG | + | chr3_1:92759253-92759272 | Msa0388340:intron | 40.0% |
| TACGAAGGGTTGAAAACAGA+CGG | - | chr3_1:92759367-92759386 | None:intergenic | 40.0% | |
| CTCTAAACCCTAAAGTAGTG+AGG | - | chr3_1:92759560-92759579 | None:intergenic | 40.0% | |
| !! | GTTATTTCTCACATGACTGC+AGG | + | chr3_1:92759623-92759642 | Msa0388340:intron | 40.0% |
| TATTTCTCACATGACTGCAG+GGG | + | chr3_1:92759625-92759644 | Msa0388340:intron | 40.0% | |
| ! | TTTTCTATGTTGGGGAGTAG+GGG | + | chr3_1:92759692-92759711 | Msa0388340:intron | 40.0% |
| CAAAGGAAAACAGGTGAAGA+TGG | + | chr3_1:92760032-92760051 | Msa0388340:intron | 40.0% | |
| ! | GACGACCACTTTCAATTTTC+TGG | + | chr3_1:92760117-92760136 | Msa0388340:CDS | 40.0% |
| ! | TTTCTGGTGTGTGCAAGAAT+TGG | + | chr3_1:92760133-92760152 | Msa0388340:CDS | 40.0% |
| TTGGTCGGGTATGCAAATAA+AGG | - | chr3_1:92760250-92760269 | None:intergenic | 40.0% | |
| AAATCGTAACATAGGCAGAG+CGG | - | chr3_1:92760308-92760327 | None:intergenic | 40.0% | |
| ! | GCCTATGTTACGATTTCTAG+CGG | + | chr3_1:92760312-92760331 | Msa0388340:CDS | 40.0% |
| TCCGCTAGAAATCGTAACAT+AGG | - | chr3_1:92760316-92760335 | None:intergenic | 40.0% | |
| ! | AGCGGATATTTTATCATGGC+GGG | + | chr3_1:92760330-92760349 | Msa0388340:CDS | 40.0% |
| AACCACCAAGACAAATTCCT+CGG | - | chr3_1:92760481-92760500 | None:intergenic | 40.0% | |
| ! | TTGGGTTGCTTATTCGAGAA+TGG | + | chr3_1:92760545-92760564 | Msa0388340:CDS | 40.0% |
| ACGAAGTCAACAATTACCTC+TGG | - | chr3_1:92760576-92760595 | None:intergenic | 40.0% | |
| !! | AGAGGTAATTGTTGACTTCG+TGG | + | chr3_1:92760575-92760594 | Msa0388340:CDS | 40.0% |
| !! | CTAAAACTGAAGAGTACTCC+TGG | + | chr3_1:92760678-92760697 | Msa0388340:CDS | 40.0% |
| GTGTAAAAGCAAAAGCTTCC+AGG | - | chr3_1:92760699-92760718 | None:intergenic | 40.0% | |
| !!! | TTGTGATGGGCAACTTTTAG+TGG | + | chr3_1:92760731-92760750 | Msa0388340:CDS | 40.0% |
| AGTTGTAGTGTGTATTCGGT+TGG | + | chr3_1:92760945-92760964 | Msa0388340:CDS | 40.0% | |
| ! | TTGAAGGAACTTGTTCCATG+AGG | - | chr3_1:92761008-92761027 | None:intergenic | 40.0% |
| CAAGTTCCTTCAAGTCTGAT+TGG | + | chr3_1:92761015-92761034 | Msa0388340:CDS | 40.0% | |
| AACACAGACCATAGGTAACA+AGG | - | chr3_1:92761104-92761123 | None:intergenic | 40.0% | |
| TCGAGCCCTAATCAAACTAT+TGG | - | chr3_1:92761150-92761169 | None:intergenic | 40.0% | |
| TACGGCATGTGGTAGAAACA+TGG | - | chr3_1:92758683-92758702 | None:intergenic | 45.0% | |
| TGGTTCAAGACGGTTGTTAC+CGG | - | chr3_1:92758914-92758933 | None:intergenic | 45.0% | |
| ATCAGCCGAATACAATGAGG+AGG | - | chr3_1:92759018-92759037 | None:intergenic | 45.0% | |
| AATACCATGGAACGATGGAG+TGG | + | chr3_1:92759074-92759093 | Msa0388340:intron | 45.0% | |
| TTAAGGAGACGAGAGTAGTG+AGG | - | chr3_1:92759125-92759144 | None:intergenic | 45.0% | |
| GCACGGAGTGATAAAGGTTA+AGG | - | chr3_1:92759142-92759161 | None:intergenic | 45.0% | |
| GAATCCTAACAGAATGGGCA+CGG | - | chr3_1:92759159-92759178 | None:intergenic | 45.0% | |
| ! | ATGACGGGAACAACTTAGAG+TGG | - | chr3_1:92759292-92759311 | None:intergenic | 45.0% |
| TGAAAAGGTCGAGAGTAGTG+AGG | - | chr3_1:92759671-92759690 | None:intergenic | 45.0% | |
| GCACATCCAAAGGAAGTTCA+CGG | - | chr3_1:92760068-92760087 | None:intergenic | 45.0% | |
| TGGTGTGTGCAAGAATTGGA+GGG | + | chr3_1:92760137-92760156 | Msa0388340:CDS | 45.0% | |
| ! | GCGGATATTTTATCATGGCG+GGG | + | chr3_1:92760331-92760350 | Msa0388340:CDS | 45.0% |
| ! | GCTTTTGCCAAAAGCAAGCA+AGG | - | chr3_1:92760457-92760476 | None:intergenic | 45.0% |
| AAGCTCCGAGGAATTTGTCT+TGG | + | chr3_1:92760473-92760492 | Msa0388340:CDS | 45.0% | |
| TTCGAGAATGGAAGATCCAG+AGG | + | chr3_1:92760557-92760576 | Msa0388340:CDS | 45.0% | |
| TCACTGACAAGGCCAACATA+GGG | + | chr3_1:92760622-92760641 | Msa0388340:CDS | 45.0% | |
| TTTCATATCCCCACCTGTTG+GGG | - | chr3_1:92760890-92760909 | None:intergenic | 45.0% | |
| CTTTCATATCCCCACCTGTT+GGG | - | chr3_1:92760891-92760910 | None:intergenic | 45.0% | |
| TAGGTGGAAACACAGACCAT+AGG | - | chr3_1:92761112-92761131 | None:intergenic | 45.0% | |
| TAGGGCTCGAAAACTTGTAG+TGG | + | chr3_1:92761160-92761179 | Msa0388340:three_prime_UTR | 45.0% | |
| !! | CCAGTGGTCTCAGGTTGATA+TGG | - | chr3_1:92758579-92758598 | None:intergenic | 50.0% |
| CCATATCAACCTGAGACCAC+TGG | + | chr3_1:92758576-92758595 | Msa0388340:intron | 50.0% | |
| GGCATGTGGTAGAAACATGG+TGG | - | chr3_1:92758680-92758699 | None:intergenic | 50.0% | |
| GAATGGGCACGGAGTGATAA+AGG | - | chr3_1:92759148-92759167 | None:intergenic | 50.0% | |
| AGAGAGCCGTGAACTTCCTT+TGG | + | chr3_1:92760059-92760078 | Msa0388340:CDS | 50.0% | |
| CTGGTGTGTGCAAGAATTGG+AGG | + | chr3_1:92760136-92760155 | Msa0388340:CDS | 50.0% | |
| ! | AGACGTGCCTTGCTTGCTTT+TGG | + | chr3_1:92760447-92760466 | Msa0388340:CDS | 50.0% |
| ! | TGCTTTTGGCAAAAGCTCCG+AGG | + | chr3_1:92760461-92760480 | Msa0388340:CDS | 50.0% |
| CTCCGAGGAATTTGTCTTGG+TGG | + | chr3_1:92760476-92760495 | Msa0388340:CDS | 50.0% | |
| GTCACTGACAAGGCCAACAT+AGG | + | chr3_1:92760621-92760640 | Msa0388340:CDS | 50.0% | |
| CACTGACAAGGCCAACATAG+GGG | + | chr3_1:92760623-92760642 | Msa0388340:CDS | 50.0% | |
| ATGCATTGAGCAACCCCAAC+AGG | + | chr3_1:92760874-92760893 | Msa0388340:CDS | 50.0% | |
| ATTGAGCAACCCCAACAGGT+GGG | + | chr3_1:92760878-92760897 | Msa0388340:CDS | 50.0% | |
| GCTTTCATATCCCCACCTGT+TGG | - | chr3_1:92760892-92760911 | None:intergenic | 50.0% | |
| TAGGCCACTCCATCGTTCCA+TGG | - | chr3_1:92759081-92759100 | None:intergenic | 55.0% | |
| GAGACGAGAGTAGTGAGGTG+AGG | - | chr3_1:92759120-92759139 | None:intergenic | 55.0% | |
| CACTCCGTGCCCATTCTGTT+AGG | + | chr3_1:92759152-92759171 | Msa0388340:intron | 55.0% | |
| CAAGCTGAGCACCCCTATGT+TGG | - | chr3_1:92760637-92760656 | None:intergenic | 55.0% | |
| CATTGAGCAACCCCAACAGG+TGG | + | chr3_1:92760877-92760896 | Msa0388340:CDS | 55.0% | |
| TTGAGCAACCCCAACAGGTG+GGG | + | chr3_1:92760879-92760898 | Msa0388340:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 92758400 | 92761268 | 92758400 | ID=Msa0388340;Name=Msa0388340 |
| chr3_1 | mRNA | 92758400 | 92761268 | 92758400 | ID=Msa0388340-mRNA-1;Parent=Msa0388340;Name=Msa0388340-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0.5|1|0|0|2|183|350 |
| chr3_1 | exon | 92758400 | 92758403 | 92758400 | ID=Msa0388340-mRNA-1:exon:26069;Parent=Msa0388340-mRNA-1 |
| chr3_1 | exon | 92760037 | 92761268 | 92760037 | ID=Msa0388340-mRNA-1:exon:26070;Parent=Msa0388340-mRNA-1 |
| chr3_1 | CDS | 92758400 | 92758403 | 92758400 | ID=Msa0388340-mRNA-1:cds;Parent=Msa0388340-mRNA-1 |
| chr3_1 | CDS | 92760037 | 92761085 | 92760037 | ID=Msa0388340-mRNA-1:cds;Parent=Msa0388340-mRNA-1 |
| chr3_1 | three_prime_UTR | 92761086 | 92761268 | 92761086 | ID=Msa0388340-mRNA-1:three_prime_utr;Parent=Msa0388340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
