AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1053200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053200 MtrunA17_Chr7g0223181 97.093 172 5 0 67 238 477 648 1.36e-103 313
Msa1053200 MtrunA17_Chr7g0223181 100.000 71 0 0 1 71 1 71 8.28e-44 155
Msa1053200 MtrunA17_Chr7g0262821 83.237 173 28 1 67 238 477 649 2.64e-93 286
Msa1053200 MtrunA17_Chr7g0262821 98.592 71 1 0 1 71 1 71 1.59e-43 155
Msa1053200 MtrunA17_Chr7g0223291 80.682 176 27 3 67 238 477 649 1.95e-89 276
Msa1053200 MtrunA17_Chr7g0223291 98.592 71 1 0 1 71 1 71 4.27e-43 154
Msa1053200 MtrunA17_Chr4g0031301 81.034 174 30 2 67 238 477 649 3.40e-85 266
Msa1053200 MtrunA17_Chr4g0031301 97.183 71 2 0 1 71 1 71 8.65e-43 153
Msa1053200 MtrunA17_Chr4g0031321 79.429 175 31 2 67 238 477 649 2.36e-84 263
Msa1053200 MtrunA17_Chr4g0031321 97.183 71 2 0 1 71 1 71 8.91e-43 153
Msa1053200 MtrunA17_Chr4g0073741 73.034 178 42 1 67 238 476 653 5.00e-76 242
Msa1053200 MtrunA17_Chr4g0073741 90.141 71 6 1 1 71 1 70 8.70e-36 133
Msa1053200 MtrunA17_Chr6g0462601 56.204 137 60 0 70 206 479 615 1.52e-42 152
Msa1053200 MtrunA17_Chr6g0462601 74.648 71 18 0 1 71 1 71 2.07e-30 118
Msa1053200 MtrunA17_Chr8g0388761 47.872 188 89 3 30 208 458 645 1.68e-41 149
Msa1053200 MtrunA17_Chr8g0388761 72.308 65 18 0 7 71 36 100 1.28e-25 104
Msa1053200 MtrunA17_Chr8g0388671 47.340 188 90 3 30 208 458 645 1.90e-41 149
Msa1053200 MtrunA17_Chr8g0388671 50.442 113 51 1 7 119 36 143 7.71e-26 105
Msa1053200 MtrunA17_Chr6g0462711 51.429 140 68 0 72 211 488 627 2.76e-40 146
Msa1053200 MtrunA17_Chr6g0462711 64.789 71 24 1 2 71 3 73 1.75e-21 92.8
Msa1053200 MtrunA17_Chr7g0223631 49.333 150 75 1 61 209 455 604 5.38e-39 142
Msa1053200 MtrunA17_Chr7g0223631 79.452 73 13 1 1 71 1 73 1.81e-31 121
Msa1053200 MtrunA17_Chr6g0462771 50.345 145 72 0 67 211 481 625 1.00e-37 139
Msa1053200 MtrunA17_Chr6g0462771 69.014 71 22 0 1 71 1 71 9.35e-25 102
Msa1053200 MtrunA17_Chr6g0462641 47.297 148 78 0 72 219 486 633 3.00e-37 137
Msa1053200 MtrunA17_Chr6g0462641 64.789 71 25 0 1 71 1 71 2.58e-24 100
Msa1053200 MtrunA17_Chr2g0284681 48.026 152 63 2 48 197 461 598 3.82e-37 137
Msa1053200 MtrunA17_Chr2g0284681 50.370 135 40 4 9 121 8 137 4.13e-30 117
Msa1053200 MtrunA17_Chr2g0299851 48.649 185 56 7 1 159 1030 1201 4.66e-37 138
Msa1053200 MtrunA17_Chr6g0462681 48.201 139 72 0 67 205 476 614 1.05e-36 136
Msa1053200 MtrunA17_Chr6g0462681 78.873 71 15 0 1 71 1 71 1.22e-32 125
Msa1053200 MtrunA17_Chr7g0223681 48.551 138 71 0 72 209 392 529 2.09e-36 134
Msa1053200 MtrunA17_Chr2g0299921 91.176 68 6 0 4 71 1024 1091 3.98e-36 135
Msa1053200 MtrunA17_Chr2g0299921 88.235 68 8 0 4 71 1408 1475 4.90e-34 129
Msa1053200 MtrunA17_Chr7g0223031 52.344 128 61 0 72 199 481 608 8.61e-36 133
Msa1053200 MtrunA17_Chr7g0223031 75.342 73 16 1 1 71 1 73 2.34e-30 118
Msa1053200 MtrunA17_Chr2g0299821 84.507 71 11 0 1 71 1 71 1.19e-35 131
Msa1053200 MtrunA17_Chr2g0299821 72.857 70 12 1 67 129 415 484 1.76e-22 95.5
Msa1053200 MtrunA17_Chr7g0223731 48.889 135 69 0 72 206 481 615 1.39e-35 132
Msa1053200 MtrunA17_Chr7g0223731 73.973 73 17 1 1 71 1 73 3.20e-29 115
Msa1053200 MtrunA17_Chr6g0462611 47.761 134 70 0 72 205 429 562 2.13e-34 129
Msa1053200 MtrunA17_Chr6g0462621 76.056 71 17 0 1 71 1 71 2.43e-34 118
Msa1053200 MtrunA17_Chr7g0223691 79.452 73 13 1 1 71 1 73 3.00e-34 117
Msa1053200 MtrunA17_Chr2g0298861 50.370 135 66 1 72 205 494 628 3.07e-34 129
Msa1053200 MtrunA17_Chr2g0298861 66.667 72 22 1 1 70 1 72 1.22e-25 104
Msa1053200 MtrunA17_Chr7g0223711 49.635 137 69 0 73 209 483 619 3.47e-34 129
Msa1053200 MtrunA17_Chr7g0223711 75.342 73 16 1 1 71 1 73 2.74e-29 115
Msa1053200 MtrunA17_Chr8g0350731 49.275 138 70 0 72 209 509 646 6.88e-34 128
Msa1053200 MtrunA17_Chr8g0350731 76.712 73 15 1 1 71 29 101 6.54e-30 117
Msa1053200 MtrunA17_Chr8g0390821 43.871 155 86 1 53 206 500 654 1.23e-33 127
Msa1053200 MtrunA17_Chr8g0390821 70.000 80 19 3 1 76 1 79 1.84e-26 107
Msa1053200 MtrunA17_Chr2g0299791 84.507 71 11 0 1 71 1034 1104 2.63e-33 127
Msa1053200 MtrunA17_Chr7g0223761 46.667 135 71 1 72 205 203 337 2.66e-33 123
Msa1053200 MtrunA17_Chr7g0223541 47.101 138 73 0 72 209 439 576 3.25e-33 126
Msa1053200 MtrunA17_Chr2g0299881 87.879 66 8 0 6 71 1035 1100 4.27e-33 126
Msa1053200 MtrunA17_Chr7g0245531 49.265 136 69 0 71 206 178 313 4.58e-33 121
Msa1053200 MtrunA17_Chr7g0233311 48.889 135 68 1 72 205 483 617 7.38e-33 125
Msa1053200 MtrunA17_Chr7g0233311 73.973 73 17 1 1 71 1 73 5.61e-29 114
Msa1053200 MtrunA17_Chr1g0188591 75.342 73 16 1 1 71 1 73 8.02e-33 114
Msa1053200 MtrunA17_Chr7g0223751 47.826 138 72 0 72 209 481 618 1.40e-32 124
Msa1053200 MtrunA17_Chr7g0223751 75.342 73 16 1 1 71 1 73 5.67e-30 117
Msa1053200 MtrunA17_Chr7g0228281 48.889 135 68 1 72 205 498 632 1.52e-32 124
Msa1053200 MtrunA17_Chr7g0228281 71.233 73 19 1 1 71 62 134 3.03e-28 112
Msa1053200 MtrunA17_Chr7g0248131 48.571 140 70 1 72 209 484 623 1.61e-32 124
Msa1053200 MtrunA17_Chr7g0248131 78.082 73 14 1 1 71 1 73 1.22e-30 119
Msa1053200 MtrunA17_Chr2g0293561 78.082 73 14 1 1 71 1 73 2.66e-32 121
Msa1053200 MtrunA17_Chr4g0040931 52.344 128 60 1 72 198 482 609 3.37e-32 123
Msa1053200 MtrunA17_Chr4g0040931 67.123 73 22 1 1 71 1 73 2.65e-26 106
Msa1053200 MtrunA17_Chr7g0248151 46.429 140 73 1 72 209 482 621 3.97e-32 123
Msa1053200 MtrunA17_Chr7g0248151 75.342 73 16 1 1 71 1 73 7.33e-23 96.7
Msa1053200 MtrunA17_Chr7g0223801 51.079 139 50 3 1 121 1 139 4.65e-32 123
Msa1053200 MtrunA17_Chr7g0223801 41.791 134 78 0 72 205 480 613 5.92e-28 111
Msa1053200 MtrunA17_Chr7g0223741 78.082 73 14 1 1 71 1 73 8.35e-32 122
Msa1053200 MtrunA17_Chr7g0223741 50.000 114 57 0 72 185 482 595 2.42e-29 115
Msa1053200 MtrunA17_Chr1g0152001 48.438 128 65 1 72 198 166 293 1.01e-31 118
Msa1053200 MtrunA17_Chr2g0298851 48.889 135 67 2 72 205 483 616 1.37e-31 121
Msa1053200 MtrunA17_Chr2g0298851 75.342 73 16 1 1 71 1 73 1.40e-30 119
Msa1053200 MtrunA17_Chr7g0223781 47.552 143 71 1 65 203 469 611 1.94e-31 121
Msa1053200 MtrunA17_Chr7g0223781 75.342 73 16 1 1 71 1 73 3.58e-29 114
Msa1053200 MtrunA17_Chr7g0223701 47.328 131 69 0 68 198 486 616 2.74e-31 120
Msa1053200 MtrunA17_Chr7g0223701 79.452 73 13 1 1 71 1 73 9.49e-31 119
Msa1053200 MtrunA17_Chr7g0233301 46.715 137 72 1 72 207 452 588 4.17e-31 120
Msa1053200 MtrunA17_Chr7g0233301 73.973 73 17 1 1 71 1 73 1.24e-28 113
Msa1053200 MtrunA17_Chr7g0223831 78.082 73 14 1 1 71 1 73 4.48e-31 120
Msa1053200 MtrunA17_Chr7g0223831 40.299 134 79 1 72 204 454 587 1.36e-24 101
Msa1053200 MtrunA17_Chr1g0166551 46.667 135 70 1 73 205 367 501 5.88e-31 119
Msa1053200 MtrunA17_Chr1g0166551 68.116 69 20 1 6 72 2 70 7.49e-24 99.4
Msa1053200 MtrunA17_Chr5g0427901 76.712 73 15 1 1 71 1 73 8.19e-31 119
Msa1053200 MtrunA17_Chr5g0427901 36.898 187 102 3 20 205 455 626 2.65e-28 112
Msa1053200 MtrunA17_Chr7g0215261 76.712 73 15 1 1 71 1 73 1.92e-30 118
Msa1053200 MtrunA17_Chr7g0215261 41.481 135 77 1 72 204 448 582 5.61e-25 102
Msa1053200 MtrunA17_Chr7g0225671 46.667 135 71 1 72 205 488 622 3.27e-30 117
Msa1053200 MtrunA17_Chr7g0225671 75.000 68 15 1 6 71 13 80 4.16e-27 108
Msa1053200 MtrunA17_Chr2g0296391 75.342 73 16 1 1 71 1 73 3.34e-30 117
Msa1053200 MtrunA17_Chr7g0223621 48.031 127 66 0 72 198 481 607 3.53e-30 117
Msa1053200 MtrunA17_Chr7g0223621 76.712 73 15 1 1 71 1 73 4.01e-30 117
Msa1053200 MtrunA17_Chr7g0221661 47.727 132 69 0 72 203 482 613 4.05e-30 117
Msa1053200 MtrunA17_Chr7g0221661 73.973 73 17 1 1 71 1 73 6.10e-30 117
Msa1053200 MtrunA17_Chr7g0245521 72.603 73 18 1 1 71 1 73 5.46e-30 112
Msa1053200 MtrunA17_Chr7g0217971 73.973 73 17 1 1 71 1 73 5.94e-30 117
Msa1053200 MtrunA17_Chr7g0217971 49.254 134 68 0 72 205 457 590 1.95e-28 112
Msa1053200 MtrunA17_Chr7g0223721 45.185 135 73 1 72 205 482 616 4.65e-29 114
Msa1053200 MtrunA17_Chr7g0223721 67.123 73 22 1 1 71 1 73 1.60e-25 104
Msa1053200 MtrunA17_Chr2g0287631 47.407 135 70 1 72 205 483 617 5.29e-29 114
Msa1053200 MtrunA17_Chr2g0287631 73.973 73 17 1 1 71 1 73 6.26e-28 111
Msa1053200 MtrunA17_Chr2g0293581 48.148 135 69 1 72 205 484 618 5.73e-29 114
Msa1053200 MtrunA17_Chr2g0293581 51.429 140 39 6 6 121 7 141 1.50e-27 110
Msa1053200 MtrunA17_Chr7g0245541 42.963 135 77 0 72 206 66 200 7.02e-29 107
Msa1053200 MtrunA17_Chr7g0223851 72.603 73 18 1 1 71 10 82 1.31e-28 113
Msa1053200 MtrunA17_Chr7g0223851 43.704 135 75 1 72 205 491 625 1.76e-27 110
Msa1053200 MtrunA17_Chr1g0151991 71.233 73 19 1 1 71 1 73 1.68e-28 109
Msa1053200 MtrunA17_Chr1g0188611 42.105 171 86 4 36 205 130 288 3.10e-28 108
Msa1053200 MtrunA17_Chr4g0012541 43.284 134 75 1 73 205 474 607 3.94e-28 112
Msa1053200 MtrunA17_Chr4g0012541 71.429 56 14 1 1 54 1 56 3.64e-20 89.0
Msa1053200 MtrunA17_Chr7g0223821 73.973 73 17 1 1 71 1 73 3.97e-28 112
Msa1053200 MtrunA17_Chr7g0223821 44.444 135 72 1 72 203 483 617 1.37e-21 93.2
Msa1053200 MtrunA17_Chr2g0293601 49.655 145 44 5 1 121 1 140 2.85e-27 108
Msa1053200 MtrunA17_Chr7g0223871 41.270 126 73 1 81 205 7 132 4.83e-24 93.6
Msa1053200 MtrunA17_Chr2g0331381 67.692 65 19 1 9 71 6 70 6.17e-23 96.7
Msa1053200 MtrunA17_Chr2g0331381 59.091 66 27 0 72 137 417 482 1.11e-18 84.3
Msa1053200 MtrunA17_Chr5g0394221 44.144 111 57 1 67 177 246 351 1.31e-20 89.0
Msa1053200 MtrunA17_Chr7g0223791 45.652 92 50 0 72 163 90 181 1.66e-20 85.5
Msa1053200 MtrunA17_Chr6g0462861 37.762 143 78 3 74 205 463 605 7.29e-19 85.1
Msa1053200 MtrunA17_Chr2g0277021 33.974 156 93 4 72 227 536 681 3.83e-16 77.4
Msa1053200 MtrunA17_Chr2g0277021 33.333 129 66 3 10 121 72 197 5.77e-12 65.1
Msa1053200 MtrunA17_Chr2g0293271 67.925 53 15 1 21 71 43 95 4.97e-16 76.6
Msa1053200 MtrunA17_Chr2g0279901 41.414 99 55 2 72 170 519 614 1.12e-15 75.9
Msa1053200 MtrunA17_Chr2g0279901 53.226 62 28 1 10 70 57 118 2.25e-12 66.2
Msa1053200 MtrunA17_Chr4g0049501 42.424 99 54 2 72 168 517 614 3.71e-15 74.3
Msa1053200 MtrunA17_Chr4g0049501 52.381 63 29 1 10 71 54 116 9.52e-13 67.4
Msa1053200 MtrunA17_Chr6g0481381 39.394 99 59 1 105 202 75 173 6.38e-14 67.8
Msa1053200 MtrunA17_Chr2g0299831 63.830 47 16 1 192 237 1 47 2.45e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053200 AT3G09440.1 82.659 173 29 1 67 238 477 649 3.32e-90 279
Msa1053200 AT3G09440.1 98.592 71 1 0 1 71 1 71 1.87e-43 155
Msa1053200 AT3G09440.4 82.659 173 29 1 67 238 477 649 3.32e-90 279
Msa1053200 AT3G09440.4 98.592 71 1 0 1 71 1 71 1.87e-43 155
Msa1053200 AT3G09440.2 82.659 173 29 1 67 238 477 649 3.32e-90 279
Msa1053200 AT3G09440.2 98.592 71 1 0 1 71 1 71 1.87e-43 155
Msa1053200 AT3G09440.3 82.659 173 29 1 67 238 477 649 3.32e-90 279
Msa1053200 AT3G09440.3 98.592 71 1 0 1 71 1 71 1.87e-43 155
Msa1053200 AT5G02500.1 81.143 175 30 1 67 238 477 651 5.18e-89 276
Msa1053200 AT5G02500.1 98.592 71 1 0 1 71 1 71 2.47e-43 155
Msa1053200 AT3G12580.1 85.714 175 21 3 67 238 477 650 1.46e-88 275
Msa1053200 AT3G12580.1 63.910 133 24 4 1 115 1 127 2.66e-43 155
Msa1053200 AT5G02490.1 79.661 177 31 2 67 238 477 653 7.59e-87 270
Msa1053200 AT5G02490.1 100.000 71 0 0 1 71 1 71 9.64e-44 156
Msa1053200 AT1G16030.1 71.839 174 44 2 67 238 476 646 2.87e-77 245
Msa1053200 AT1G16030.1 56.061 132 35 4 1 115 1 126 2.44e-34 130
Msa1053200 AT1G56410.1 76.087 138 31 1 72 209 482 617 1.25e-64 211
Msa1053200 AT1G56410.1 62.937 143 26 5 1 121 1 138 3.72e-44 157
Msa1053200 AT5G02500.2 77.206 136 28 1 106 238 386 521 1.11e-60 199
Msa1053200 AT5G02500.2 98.592 71 1 0 1 71 1 71 5.31e-44 155
Msa1053200 AT5G42020.1 46.970 198 95 4 30 217 457 654 6.97e-49 170
Msa1053200 AT5G42020.1 46.711 152 59 3 7 141 35 181 2.27e-28 113
Msa1053200 AT5G42020.3 46.970 198 95 4 30 217 462 659 1.04e-48 170
Msa1053200 AT5G42020.3 46.711 152 59 3 7 141 40 186 2.61e-28 112
Msa1053200 AT5G28540.1 46.809 188 91 3 30 208 457 644 2.54e-47 166
Msa1053200 AT5G28540.1 46.711 152 59 3 7 141 35 181 2.39e-28 113
Msa1053200 AT1G09080.2 49.275 138 69 1 72 208 511 648 2.18e-32 124
Msa1053200 AT1G09080.2 75.385 65 16 0 7 71 40 104 4.51e-27 109
Msa1053200 AT1G09080.1 49.275 138 69 1 72 208 521 658 2.41e-32 124
Msa1053200 AT1G09080.1 75.385 65 16 0 7 71 50 114 5.31e-27 109
Msa1053200 AT5G42020.2 42.328 189 82 6 7 176 35 215 1.79e-28 113
Msa1053200 AT5G42020.2 49.438 89 43 2 131 217 511 599 1.09e-21 93.6
Msa1053200 AT5G49910.1 36.667 150 86 4 72 218 545 688 1.39e-16 79.0
Msa1053200 AT5G49910.1 50.000 64 31 1 9 71 80 143 6.27e-12 65.1
Msa1053200 AT5G09590.1 43.434 99 53 2 72 170 523 618 4.37e-16 77.4
Msa1053200 AT5G09590.1 56.452 62 26 1 10 70 60 121 1.00e-12 67.4
Msa1053200 AT4G24280.1 37.956 137 77 4 72 207 545 674 9.91e-16 76.3
Msa1053200 AT4G24280.1 50.794 63 30 1 10 71 81 143 6.39e-12 65.1
Msa1053200 AT4G37910.1 40.404 99 56 2 72 168 518 615 1.49e-13 70.1
Msa1053200 AT4G37910.1 52.381 63 29 1 10 71 55 117 1.31e-12 67.4
Msa1053200 AT4G37910.2 40.404 99 56 2 72 168 518 615 1.49e-13 70.1
Msa1053200 AT4G37910.2 52.381 63 29 1 10 71 55 117 1.31e-12 67.4

Find 59 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCGACTTCTTCAATCTT+AGG 0.232445 7_2:-22580180 None:intergenic
ATCTTCTGCCTTGTATTTCT+CGG 0.268009 7_2:-22579839 None:intergenic
TTACCGAAAACAGTGTTAAC+AGG 0.319243 7_2:-22578513 None:intergenic
TGATACATCTTAGCAATGAT+TGG 0.323430 7_2:-22580087 None:intergenic
CATACTCTTGTGTTGGAGTA+TGG 0.337868 7_2:+22578367 Msa1053200:CDS
GGTACGGTTTCCTTGATCAT+TGG 0.389831 7_2:-22578415 None:intergenic
CCTCCAGCAGCAGGTGGTGC+TGG 0.395029 7_2:+22580156 Msa1053200:CDS
TCCATACCACCAGCCATATC+AGG 0.402194 7_2:-22580123 None:intergenic
GGTTGATGCAAAGAATGCTT+TGG 0.410300 7_2:+22579879 Msa1053200:CDS
ACCTGCGATTGGAATAGATC+TGG 0.413445 7_2:+22578338 Msa1053200:CDS
AGGTGGAGGTGCTCCTGATA+TGG 0.414427 7_2:+22580110 Msa1053200:CDS
CGACAAAGGAAGGTTGTCTA+AGG 0.418046 7_2:+22579789 Msa1053200:CDS
TCTGCTGAGGACAAAACAAC+TGG 0.419349 7_2:+22579739 Msa1053200:CDS
TCCTGATATGGCTGGTGGTA+TGG 0.425793 7_2:+22580122 Msa1053200:CDS
ACAATTAAAGATGAGAAGAT+TGG 0.429309 7_2:+22579928 Msa1053200:CDS
GATACATCTTAGCAATGATT+GGG 0.442977 7_2:-22580086 None:intergenic
TAAGGAAGAAATTGAGAAGA+TGG 0.466344 7_2:+22579807 Msa1053200:CDS
CCATCAACAATGGCCGGAAA+AGG 0.467610 7_2:+22578309 None:intergenic
ACTCATCAGCCTCTGCCAAC+TGG 0.471841 7_2:-22580026 None:intergenic
CGGTGATGCTGCTAAGAATC+AGG 0.474840 7_2:+22578479 Msa1053200:CDS
GGACCAGCACCACCTGCTGC+TGG 0.476038 7_2:-22580159 None:intergenic
GAGATCATCGCCAATGATCA+AGG 0.487997 7_2:+22578405 Msa1053200:CDS
GGAGGTGCTCCTGATATGGC+TGG 0.498862 7_2:+22580114 Msa1053200:CDS
AGAAATTGAGAAGATGGTTG+AGG 0.504892 7_2:+22579813 Msa1053200:CDS
TGACGCTGCAATTCAGTGGT+TGG 0.507402 7_2:+22579996 Msa1053200:CDS
ATCATTGCTAAGATGTATCA+AGG 0.508198 7_2:+22580090 Msa1053200:CDS
GATGAAGTTCCTCCAGCAGC+AGG 0.518012 7_2:+22580147 Msa1053200:CDS
TGCTTCGACATTGATGCCAA+TGG 0.532548 7_2:+22579703 Msa1053200:CDS
CAACATAAGACGGCGTGGTA+CGG 0.535173 7_2:-22578431 None:intergenic
TTGAATCCATCAACAATGGC+CGG 0.536348 7_2:+22578303 None:intergenic
CCCAGATCTATTCCAATCGC+AGG 0.536734 7_2:-22578339 None:intergenic
TGAGTTTGAAGATAAGATGA+AGG 0.542099 7_2:+22580044 Msa1053200:CDS
AAAGGTGAAGGACCTGCGAT+TGG 0.542152 7_2:+22578327 Msa1053200:CDS
AGACAACCTTCCTTTGTCGT+TGG 0.545078 7_2:-22579785 None:intergenic
ACTGATAGCGAAAGATTGAT+CGG 0.559169 7_2:+22578459 Msa1053200:CDS
TAGCAATGATTGGGTTGCAA+AGG 0.559904 7_2:-22580077 None:intergenic
CCTGCGATTGGAATAGATCT+GGG 0.566168 7_2:+22578339 Msa1053200:CDS
GGACAGTAACCAGTTGGCAG+AGG 0.580101 7_2:+22580017 Msa1053200:CDS
GAAATACAAGGCAGAAGATG+AGG 0.586111 7_2:+22579843 Msa1053200:CDS
CCAGCACCACCTGCTGCTGG+AGG 0.596593 7_2:-22580156 None:intergenic
GGAACGACATACTCTTGTGT+TGG 0.598910 7_2:+22578360 Msa1053200:CDS
TGGTTCAAAGCTTTCACCTG+AGG 0.599447 7_2:+22579948 Msa1053200:CDS
TGAGGAAGCCGAGAAATACA+AGG 0.601017 7_2:+22579831 Msa1053200:CDS
AGAGACATTCAAGATACCAT+TGG 0.601087 7_2:-22579719 None:intergenic
CTATCACCAACGACAAAGGA+AGG 0.602262 7_2:+22579779 Msa1053200:CDS
GCTAAGATGTATCAAGGTGG+AGG 0.602520 7_2:+22580096 Msa1053200:CDS
AAAACTATGCTTACAACATG+AGG 0.603991 7_2:+22579902 Msa1053200:CDS
ACAATGGCCGGAAAAGGTGA+AGG 0.606509 7_2:+22578315 None:intergenic
GTGGTTGGACAGTAACCAGT+TGG 0.608307 7_2:+22580011 Msa1053200:CDS
ATTACTATCACCAACGACAA+AGG 0.608995 7_2:+22579775 Msa1053200:CDS
TCAGTAAAAGCAACATAAGA+CGG 0.609127 7_2:-22578441 None:intergenic
TACCGAAAACAGTGTTAACA+GGG 0.619335 7_2:-22578512 None:intergenic
CTGCTGAGGACAAAACAACT+GGG 0.640141 7_2:+22579740 Msa1053200:CDS
GGTGCTCCTGATATGGCTGG+TGG 0.645251 7_2:+22580117 Msa1053200:CDS
GAAGTTCCTCCAGCAGCAGG+TGG 0.652201 7_2:+22580150 Msa1053200:CDS
CAATTGACGCTGCAATTCAG+TGG 0.657113 7_2:+22579992 Msa1053200:CDS
TATCTTGAATGTCTCTGCTG+AGG 0.697510 7_2:+22579726 Msa1053200:CDS
AAAAGCAACATAAGACGGCG+TGG 0.710533 7_2:-22578436 None:intergenic
ATTGCTAAGATGTATCAAGG+TGG 0.733799 7_2:+22580093 Msa1053200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATAAATAATTAATC+TGG + chr7_2:22578636-22578655 Msa1053200:intron 10.0%
!! TGAAAATAAATAATTAATCT+GGG + chr7_2:22578637-22578656 Msa1053200:intron 10.0%
!! TTGAAAATAAATAATTAATC+TGG + chr7_2:22578636-22578655 Msa1053200:intron 10.0%
!! TGAAAATAAATAATTAATCT+GGG + chr7_2:22578637-22578656 Msa1053200:intron 10.0%
!! GAAAATAAATAATTAATCTG+GGG + chr7_2:22578638-22578657 Msa1053200:intron 15.0%
!! ACAAATAATTGAAAATTAAC+CGG - chr7_2:22578670-22578689 None:intergenic 15.0%
!! GAAAATAAATAATTAATCTG+GGG + chr7_2:22578638-22578657 Msa1053200:intron 15.0%
!! ACAAATAATTGAAAATTAAC+CGG - chr7_2:22578670-22578689 None:intergenic 15.0%
!!! TGTAATTTGTTTTTTTGAGT+TGG + chr7_2:22578893-22578912 Msa1053200:intron 20.0%
!! GTTTATAATGATAGAACTTA+TGG + chr7_2:22578927-22578946 Msa1053200:intron 20.0%
!! TGCATGATACTATTTAATTA+AGG - chr7_2:22579027-22579046 None:intergenic 20.0%
!!! TGTAATTTGTTTTTTTGAGT+TGG + chr7_2:22578893-22578912 Msa1053200:intron 20.0%
!! GTTTATAATGATAGAACTTA+TGG + chr7_2:22578927-22578946 Msa1053200:intron 20.0%
!! TGCATGATACTATTTAATTA+AGG - chr7_2:22579027-22579046 None:intergenic 20.0%
! TCGTTAATCAACATGAATAA+AGG - chr7_2:22578816-22578835 None:intergenic 25.0%
!! TTTATTCATGTTGATTAACG+AGG + chr7_2:22578815-22578834 Msa1053200:intron 25.0%
!! TTATTCATGTTGATTAACGA+GGG + chr7_2:22578816-22578835 Msa1053200:intron 25.0%
!!! TTTGTTTTTTTGAGTTGGAT+CGG + chr7_2:22578898-22578917 Msa1053200:intron 25.0%
! AATAGTATCATGCAAAAGAT+TGG + chr7_2:22579033-22579052 Msa1053200:intron 25.0%
!!! TTGACGTATTGAATTTTAGT+TGG + chr7_2:22579107-22579126 Msa1053200:intron 25.0%
!! TTTGAAGTTTGATTGCTTAT+TGG + chr7_2:22579135-22579154 Msa1053200:intron 25.0%
! ACAATTAAAGATGAGAAGAT+TGG + chr7_2:22579928-22579947 Msa1053200:CDS 25.0%
! TCGTTAATCAACATGAATAA+AGG - chr7_2:22578816-22578835 None:intergenic 25.0%
!! TTTATTCATGTTGATTAACG+AGG + chr7_2:22578815-22578834 Msa1053200:intron 25.0%
!! TTATTCATGTTGATTAACGA+GGG + chr7_2:22578816-22578835 Msa1053200:intron 25.0%
!!! TTTGTTTTTTTGAGTTGGAT+CGG + chr7_2:22578898-22578917 Msa1053200:intron 25.0%
! AATAGTATCATGCAAAAGAT+TGG + chr7_2:22579033-22579052 Msa1053200:intron 25.0%
!!! TTGACGTATTGAATTTTAGT+TGG + chr7_2:22579107-22579126 Msa1053200:intron 25.0%
!! TTTGAAGTTTGATTGCTTAT+TGG + chr7_2:22579135-22579154 Msa1053200:intron 25.0%
! ACAATTAAAGATGAGAAGAT+TGG + chr7_2:22579928-22579947 Msa1053200:CDS 25.0%
TCAGTAAAAGCAACATAAGA+CGG - chr7_2:22578444-22578463 None:intergenic 30.0%
ATTTGATCCCTTACATTGAA+TGG + chr7_2:22578847-22578866 Msa1053200:intron 30.0%
AAACTCACCATTCAATGTAA+GGG - chr7_2:22578857-22578876 None:intergenic 30.0%
TTGTAGTTAACACCAATCAT+GGG - chr7_2:22579285-22579304 None:intergenic 30.0%
!! ATGATTGGTGTTAACTACAA+GGG + chr7_2:22579285-22579304 Msa1053200:intron 30.0%
TGCTGAAGAAATTTCATCTA+TGG + chr7_2:22579326-22579345 Msa1053200:intron 30.0%
TAAGGAAGAAATTGAGAAGA+TGG + chr7_2:22579807-22579826 Msa1053200:CDS 30.0%
AAAACTATGCTTACAACATG+AGG + chr7_2:22579902-22579921 Msa1053200:CDS 30.0%
TGAGTTTGAAGATAAGATGA+AGG + chr7_2:22580044-22580063 Msa1053200:CDS 30.0%
GATACATCTTAGCAATGATT+GGG - chr7_2:22580089-22580108 None:intergenic 30.0%
TGATACATCTTAGCAATGAT+TGG - chr7_2:22580090-22580109 None:intergenic 30.0%
ATCATTGCTAAGATGTATCA+AGG + chr7_2:22580090-22580109 Msa1053200:CDS 30.0%
! TAATCGACTTCTTCAATCTT+AGG - chr7_2:22580183-22580202 None:intergenic 30.0%
TCAGTAAAAGCAACATAAGA+CGG - chr7_2:22578444-22578463 None:intergenic 30.0%
ATTTGATCCCTTACATTGAA+TGG + chr7_2:22578847-22578866 Msa1053200:intron 30.0%
AAACTCACCATTCAATGTAA+GGG - chr7_2:22578857-22578876 None:intergenic 30.0%
TTGTAGTTAACACCAATCAT+GGG - chr7_2:22579285-22579304 None:intergenic 30.0%
!! ATGATTGGTGTTAACTACAA+GGG + chr7_2:22579285-22579304 Msa1053200:intron 30.0%
TGCTGAAGAAATTTCATCTA+TGG + chr7_2:22579326-22579345 Msa1053200:intron 30.0%
TAAGGAAGAAATTGAGAAGA+TGG + chr7_2:22579807-22579826 Msa1053200:CDS 30.0%
AAAACTATGCTTACAACATG+AGG + chr7_2:22579902-22579921 Msa1053200:CDS 30.0%
TGAGTTTGAAGATAAGATGA+AGG + chr7_2:22580044-22580063 Msa1053200:CDS 30.0%
GATACATCTTAGCAATGATT+GGG - chr7_2:22580089-22580108 None:intergenic 30.0%
TGATACATCTTAGCAATGAT+TGG - chr7_2:22580090-22580109 None:intergenic 30.0%
ATCATTGCTAAGATGTATCA+AGG + chr7_2:22580090-22580109 Msa1053200:CDS 30.0%
! TAATCGACTTCTTCAATCTT+AGG - chr7_2:22580183-22580202 None:intergenic 30.0%
! ACTGATAGCGAAAGATTGAT+CGG + chr7_2:22578459-22578478 Msa1053200:CDS 35.0%
! AACCCTGTTAACACTGTTTT+CGG + chr7_2:22578510-22578529 Msa1053200:CDS 35.0%
TACCGAAAACAGTGTTAACA+GGG - chr7_2:22578515-22578534 None:intergenic 35.0%
TTACCGAAAACAGTGTTAAC+AGG - chr7_2:22578516-22578535 None:intergenic 35.0%
! AATTAATCTGGGGTCTTATC+CGG + chr7_2:22578648-22578667 Msa1053200:intron 35.0%
CAAACTCACCATTCAATGTA+AGG - chr7_2:22578858-22578877 None:intergenic 35.0%
!!! TTTTGAGTTGGATCGGAATA+TGG + chr7_2:22578905-22578924 Msa1053200:intron 35.0%
CAATTGAGTGAGATAAGGTT+TGG + chr7_2:22578974-22578993 Msa1053200:intron 35.0%
ACAGATGCTAAACGTTTGAT+TGG + chr7_2:22579180-22579199 Msa1053200:intron 35.0%
ATGCTAAACGTTTGATTGGA+AGG + chr7_2:22579184-22579203 Msa1053200:intron 35.0%
CTTGTAGTTAACACCAATCA+TGG - chr7_2:22579286-22579305 None:intergenic 35.0%
!! CATGATTGGTGTTAACTACA+AGG + chr7_2:22579284-22579303 Msa1053200:intron 35.0%
GTCTTGATCCAAGTTTATGA+AGG + chr7_2:22579586-22579605 Msa1053200:intron 35.0%
AAAGCTCAAATTTACCCAAC+AGG - chr7_2:22579639-22579658 None:intergenic 35.0%
TTGGGTAAATTTGAGCTTTC+CGG + chr7_2:22579640-22579659 Msa1053200:intron 35.0%
! TCGAAGCAAACTGTTATTTG+AGG - chr7_2:22579691-22579710 None:intergenic 35.0%
AGAGACATTCAAGATACCAT+TGG - chr7_2:22579722-22579741 None:intergenic 35.0%
ATTACTATCACCAACGACAA+AGG + chr7_2:22579775-22579794 Msa1053200:CDS 35.0%
AGAAATTGAGAAGATGGTTG+AGG + chr7_2:22579813-22579832 Msa1053200:CDS 35.0%
ATCTTCTGCCTTGTATTTCT+CGG - chr7_2:22579842-22579861 None:intergenic 35.0%
AGATGAGGAACACAAAAAGA+AGG + chr7_2:22579858-22579877 Msa1053200:CDS 35.0%
! TCAATCTTCTTTTTGTCCTC+AGG - chr7_2:22579967-22579986 None:intergenic 35.0%
ATTGCTAAGATGTATCAAGG+TGG + chr7_2:22580093-22580112 Msa1053200:CDS 35.0%
! ACTGATAGCGAAAGATTGAT+CGG + chr7_2:22578459-22578478 Msa1053200:CDS 35.0%
! AACCCTGTTAACACTGTTTT+CGG + chr7_2:22578510-22578529 Msa1053200:CDS 35.0%
TACCGAAAACAGTGTTAACA+GGG - chr7_2:22578515-22578534 None:intergenic 35.0%
TTACCGAAAACAGTGTTAAC+AGG - chr7_2:22578516-22578535 None:intergenic 35.0%
! AATTAATCTGGGGTCTTATC+CGG + chr7_2:22578648-22578667 Msa1053200:intron 35.0%
CAAACTCACCATTCAATGTA+AGG - chr7_2:22578858-22578877 None:intergenic 35.0%
!!! TTTTGAGTTGGATCGGAATA+TGG + chr7_2:22578905-22578924 Msa1053200:intron 35.0%
CAATTGAGTGAGATAAGGTT+TGG + chr7_2:22578974-22578993 Msa1053200:intron 35.0%
ACAGATGCTAAACGTTTGAT+TGG + chr7_2:22579180-22579199 Msa1053200:intron 35.0%
ATGCTAAACGTTTGATTGGA+AGG + chr7_2:22579184-22579203 Msa1053200:intron 35.0%
CTTGTAGTTAACACCAATCA+TGG - chr7_2:22579286-22579305 None:intergenic 35.0%
!! CATGATTGGTGTTAACTACA+AGG + chr7_2:22579284-22579303 Msa1053200:intron 35.0%
GTCTTGATCCAAGTTTATGA+AGG + chr7_2:22579586-22579605 Msa1053200:intron 35.0%
AAAGCTCAAATTTACCCAAC+AGG - chr7_2:22579639-22579658 None:intergenic 35.0%
TTGGGTAAATTTGAGCTTTC+CGG + chr7_2:22579640-22579659 Msa1053200:intron 35.0%
! TCGAAGCAAACTGTTATTTG+AGG - chr7_2:22579691-22579710 None:intergenic 35.0%
AGAGACATTCAAGATACCAT+TGG - chr7_2:22579722-22579741 None:intergenic 35.0%
ATTACTATCACCAACGACAA+AGG + chr7_2:22579775-22579794 Msa1053200:CDS 35.0%
AGAAATTGAGAAGATGGTTG+AGG + chr7_2:22579813-22579832 Msa1053200:CDS 35.0%
ATCTTCTGCCTTGTATTTCT+CGG - chr7_2:22579842-22579861 None:intergenic 35.0%
AGATGAGGAACACAAAAAGA+AGG + chr7_2:22579858-22579877 Msa1053200:CDS 35.0%
! TCAATCTTCTTTTTGTCCTC+AGG - chr7_2:22579967-22579986 None:intergenic 35.0%
ATTGCTAAGATGTATCAAGG+TGG + chr7_2:22580093-22580112 Msa1053200:CDS 35.0%
CATACTCTTGTGTTGGAGTA+TGG + chr7_2:22578367-22578386 Msa1053200:CDS 40.0%
CTTATCTCACTCAATTGCGT+CGG - chr7_2:22578971-22578990 None:intergenic 40.0%
TTCAGAGTGACATGAAGCTA+TGG + chr7_2:22579226-22579245 Msa1053200:intron 40.0%
GAGATTGCTGAAGCTTATCT+CGG + chr7_2:22579366-22579385 Msa1053200:intron 40.0%
! TGCGTATGGTCTTGACAAAA+AGG + chr7_2:22579524-22579543 Msa1053200:intron 40.0%
! AGGTTGATTGTCTGAGTAAG+TGG - chr7_2:22579563-22579582 None:intergenic 40.0%
ACTTACTCAGACAATCAACC+TGG + chr7_2:22579562-22579581 Msa1053200:intron 40.0%
TAAACTTGGATCAAGACACC+AGG - chr7_2:22579583-22579602 None:intergenic 40.0%
CTCTCTCACCTTCATAAACT+TGG - chr7_2:22579597-22579616 None:intergenic 40.0%
TATCTTGAATGTCTCTGCTG+AGG + chr7_2:22579726-22579745 Msa1053200:CDS 40.0%
GAAATACAAGGCAGAAGATG+AGG + chr7_2:22579843-22579862 Msa1053200:CDS 40.0%
! GGTTGATGCAAAGAATGCTT+TGG + chr7_2:22579879-22579898 Msa1053200:CDS 40.0%
! TAGCAATGATTGGGTTGCAA+AGG - chr7_2:22580080-22580099 None:intergenic 40.0%
CATACTCTTGTGTTGGAGTA+TGG + chr7_2:22578367-22578386 Msa1053200:CDS 40.0%
CTTATCTCACTCAATTGCGT+CGG - chr7_2:22578971-22578990 None:intergenic 40.0%
TTCAGAGTGACATGAAGCTA+TGG + chr7_2:22579226-22579245 Msa1053200:intron 40.0%
GAGATTGCTGAAGCTTATCT+CGG + chr7_2:22579366-22579385 Msa1053200:intron 40.0%
! TGCGTATGGTCTTGACAAAA+AGG + chr7_2:22579524-22579543 Msa1053200:intron 40.0%
! AGGTTGATTGTCTGAGTAAG+TGG - chr7_2:22579563-22579582 None:intergenic 40.0%
ACTTACTCAGACAATCAACC+TGG + chr7_2:22579562-22579581 Msa1053200:intron 40.0%
TAAACTTGGATCAAGACACC+AGG - chr7_2:22579583-22579602 None:intergenic 40.0%
CTCTCTCACCTTCATAAACT+TGG - chr7_2:22579597-22579616 None:intergenic 40.0%
TATCTTGAATGTCTCTGCTG+AGG + chr7_2:22579726-22579745 Msa1053200:CDS 40.0%
GAAATACAAGGCAGAAGATG+AGG + chr7_2:22579843-22579862 Msa1053200:CDS 40.0%
! GGTTGATGCAAAGAATGCTT+TGG + chr7_2:22579879-22579898 Msa1053200:CDS 40.0%
! TAGCAATGATTGGGTTGCAA+AGG - chr7_2:22580080-22580099 None:intergenic 40.0%
ACCTGCGATTGGAATAGATC+TGG + chr7_2:22578338-22578357 Msa1053200:CDS 45.0%
CCTGCGATTGGAATAGATCT+GGG + chr7_2:22578339-22578358 Msa1053200:CDS 45.0%
GGAACGACATACTCTTGTGT+TGG + chr7_2:22578360-22578379 Msa1053200:CDS 45.0%
GAGATCATCGCCAATGATCA+AGG + chr7_2:22578405-22578424 Msa1053200:CDS 45.0%
GGTACGGTTTCCTTGATCAT+TGG - chr7_2:22578418-22578437 None:intergenic 45.0%
AAAAGCAACATAAGACGGCG+TGG - chr7_2:22578439-22578458 None:intergenic 45.0%
CGACGCAATTGAGTGAGATA+AGG + chr7_2:22578969-22578988 Msa1053200:intron 45.0%
CATGAAGCTATGGCCTTTCA+AGG + chr7_2:22579236-22579255 Msa1053200:intron 45.0%
TGGGAATCGTTGAAGTAAGC+TGG - chr7_2:22579423-22579442 None:intergenic 45.0%
ATCCTTTGTGGCTTGACGTT+GGG - chr7_2:22579442-22579461 None:intergenic 45.0%
ATTGAGTCCTGCAATGACAC+CGG - chr7_2:22579466-22579485 None:intergenic 45.0%
AACCAGAGACAACAACCTGT+TGG + chr7_2:22579621-22579640 Msa1053200:intron 45.0%
ACCAGAGACAACAACCTGTT+GGG + chr7_2:22579622-22579641 Msa1053200:intron 45.0%
GTTATTTGAGGAACACCACG+AGG - chr7_2:22579679-22579698 None:intergenic 45.0%
TGCTTCGACATTGATGCCAA+TGG + chr7_2:22579703-22579722 Msa1053200:CDS 45.0%
TCTGCTGAGGACAAAACAAC+TGG + chr7_2:22579739-22579758 Msa1053200:CDS 45.0%
CTGCTGAGGACAAAACAACT+GGG + chr7_2:22579740-22579759 Msa1053200:CDS 45.0%
CTATCACCAACGACAAAGGA+AGG + chr7_2:22579779-22579798 Msa1053200:CDS 45.0%
AGACAACCTTCCTTTGTCGT+TGG - chr7_2:22579788-22579807 None:intergenic 45.0%
CGACAAAGGAAGGTTGTCTA+AGG + chr7_2:22579789-22579808 Msa1053200:CDS 45.0%
TGAGGAAGCCGAGAAATACA+AGG + chr7_2:22579831-22579850 Msa1053200:CDS 45.0%
TGGTTCAAAGCTTTCACCTG+AGG + chr7_2:22579948-22579967 Msa1053200:CDS 45.0%
CAATTGACGCTGCAATTCAG+TGG + chr7_2:22579992-22580011 Msa1053200:CDS 45.0%
GCTAAGATGTATCAAGGTGG+AGG + chr7_2:22580096-22580115 Msa1053200:CDS 45.0%
ACCTGCGATTGGAATAGATC+TGG + chr7_2:22578338-22578357 Msa1053200:CDS 45.0%
CCTGCGATTGGAATAGATCT+GGG + chr7_2:22578339-22578358 Msa1053200:CDS 45.0%
GGAACGACATACTCTTGTGT+TGG + chr7_2:22578360-22578379 Msa1053200:CDS 45.0%
GAGATCATCGCCAATGATCA+AGG + chr7_2:22578405-22578424 Msa1053200:CDS 45.0%
GGTACGGTTTCCTTGATCAT+TGG - chr7_2:22578418-22578437 None:intergenic 45.0%
AAAAGCAACATAAGACGGCG+TGG - chr7_2:22578439-22578458 None:intergenic 45.0%
CGACGCAATTGAGTGAGATA+AGG + chr7_2:22578969-22578988 Msa1053200:intron 45.0%
CATGAAGCTATGGCCTTTCA+AGG + chr7_2:22579236-22579255 Msa1053200:intron 45.0%
TGGGAATCGTTGAAGTAAGC+TGG - chr7_2:22579423-22579442 None:intergenic 45.0%
ATCCTTTGTGGCTTGACGTT+GGG - chr7_2:22579442-22579461 None:intergenic 45.0%
ATTGAGTCCTGCAATGACAC+CGG - chr7_2:22579466-22579485 None:intergenic 45.0%
AACCAGAGACAACAACCTGT+TGG + chr7_2:22579621-22579640 Msa1053200:intron 45.0%
ACCAGAGACAACAACCTGTT+GGG + chr7_2:22579622-22579641 Msa1053200:intron 45.0%
GTTATTTGAGGAACACCACG+AGG - chr7_2:22579679-22579698 None:intergenic 45.0%
TGCTTCGACATTGATGCCAA+TGG + chr7_2:22579703-22579722 Msa1053200:CDS 45.0%
TCTGCTGAGGACAAAACAAC+TGG + chr7_2:22579739-22579758 Msa1053200:CDS 45.0%
CTGCTGAGGACAAAACAACT+GGG + chr7_2:22579740-22579759 Msa1053200:CDS 45.0%
CTATCACCAACGACAAAGGA+AGG + chr7_2:22579779-22579798 Msa1053200:CDS 45.0%
AGACAACCTTCCTTTGTCGT+TGG - chr7_2:22579788-22579807 None:intergenic 45.0%
CGACAAAGGAAGGTTGTCTA+AGG + chr7_2:22579789-22579808 Msa1053200:CDS 45.0%
TGAGGAAGCCGAGAAATACA+AGG + chr7_2:22579831-22579850 Msa1053200:CDS 45.0%
TGGTTCAAAGCTTTCACCTG+AGG + chr7_2:22579948-22579967 Msa1053200:CDS 45.0%
CAATTGACGCTGCAATTCAG+TGG + chr7_2:22579992-22580011 Msa1053200:CDS 45.0%
GCTAAGATGTATCAAGGTGG+AGG + chr7_2:22580096-22580115 Msa1053200:CDS 45.0%
AAAGGTGAAGGACCTGCGAT+TGG + chr7_2:22578327-22578346 Msa1053200:CDS 50.0%
CCCAGATCTATTCCAATCGC+AGG - chr7_2:22578342-22578361 None:intergenic 50.0%
CAACATAAGACGGCGTGGTA+CGG - chr7_2:22578434-22578453 None:intergenic 50.0%
CGGTGATGCTGCTAAGAATC+AGG + chr7_2:22578479-22578498 Msa1053200:CDS 50.0%
TGGCCTTTCAAGGTTACTGC+TGG + chr7_2:22579246-22579265 Msa1053200:intron 50.0%
GGACCAGCAGTAACCTTGAA+AGG - chr7_2:22579252-22579271 None:intergenic 50.0%
TTCAAGGTTACTGCTGGTCC+TGG + chr7_2:22579252-22579271 Msa1053200:intron 50.0%
! CCAATCATGGGCTTTTCACC+AGG - chr7_2:22579273-22579292 None:intergenic 50.0%
CCTGGTGAAAAGCCCATGAT+TGG + chr7_2:22579270-22579289 Msa1053200:intron 50.0%
! TGGTGTTAACTACAAGGGCG+AGG + chr7_2:22579290-22579309 Msa1053200:intron 50.0%
TTCCCAACGTCAAGCCACAA+AGG + chr7_2:22579437-22579456 Msa1053200:intron 50.0%
CATCCTTTGTGGCTTGACGT+TGG - chr7_2:22579443-22579462 None:intergenic 50.0%
AATGACACCGGCATCCTTTG+TGG - chr7_2:22579454-22579473 None:intergenic 50.0%
TACGCAATAGCTGCAGCAGT+TGG - chr7_2:22579510-22579529 None:intergenic 50.0%
ACTGCTGCAGCTATTGCGTA+TGG + chr7_2:22579510-22579529 Msa1053200:intron 50.0%
ACCCAACAGGTTGTTGTCTC+TGG - chr7_2:22579626-22579645 None:intergenic 50.0%
TGACGCTGCAATTCAGTGGT+TGG + chr7_2:22579996-22580015 Msa1053200:CDS 50.0%
GTGGTTGGACAGTAACCAGT+TGG + chr7_2:22580011-22580030 Msa1053200:CDS 50.0%
TCCTGATATGGCTGGTGGTA+TGG + chr7_2:22580122-22580141 Msa1053200:CDS 50.0%
TCCATACCACCAGCCATATC+AGG - chr7_2:22580126-22580145 None:intergenic 50.0%
AAAGGTGAAGGACCTGCGAT+TGG + chr7_2:22578327-22578346 Msa1053200:CDS 50.0%
CCCAGATCTATTCCAATCGC+AGG - chr7_2:22578342-22578361 None:intergenic 50.0%
CAACATAAGACGGCGTGGTA+CGG - chr7_2:22578434-22578453 None:intergenic 50.0%
CGGTGATGCTGCTAAGAATC+AGG + chr7_2:22578479-22578498 Msa1053200:CDS 50.0%
TGGCCTTTCAAGGTTACTGC+TGG + chr7_2:22579246-22579265 Msa1053200:intron 50.0%
GGACCAGCAGTAACCTTGAA+AGG - chr7_2:22579252-22579271 None:intergenic 50.0%
TTCAAGGTTACTGCTGGTCC+TGG + chr7_2:22579252-22579271 Msa1053200:intron 50.0%
! CCAATCATGGGCTTTTCACC+AGG - chr7_2:22579273-22579292 None:intergenic 50.0%
CCTGGTGAAAAGCCCATGAT+TGG + chr7_2:22579270-22579289 Msa1053200:intron 50.0%
! TGGTGTTAACTACAAGGGCG+AGG + chr7_2:22579290-22579309 Msa1053200:intron 50.0%
TTCCCAACGTCAAGCCACAA+AGG + chr7_2:22579437-22579456 Msa1053200:intron 50.0%
CATCCTTTGTGGCTTGACGT+TGG - chr7_2:22579443-22579462 None:intergenic 50.0%
AATGACACCGGCATCCTTTG+TGG - chr7_2:22579454-22579473 None:intergenic 50.0%
TACGCAATAGCTGCAGCAGT+TGG - chr7_2:22579510-22579529 None:intergenic 50.0%
ACTGCTGCAGCTATTGCGTA+TGG + chr7_2:22579510-22579529 Msa1053200:intron 50.0%
ACCCAACAGGTTGTTGTCTC+TGG - chr7_2:22579626-22579645 None:intergenic 50.0%
TGACGCTGCAATTCAGTGGT+TGG + chr7_2:22579996-22580015 Msa1053200:CDS 50.0%
GTGGTTGGACAGTAACCAGT+TGG + chr7_2:22580011-22580030 Msa1053200:CDS 50.0%
TCCTGATATGGCTGGTGGTA+TGG + chr7_2:22580122-22580141 Msa1053200:CDS 50.0%
TCCATACCACCAGCCATATC+AGG - chr7_2:22580126-22580145 None:intergenic 50.0%
! CGCAGGTCCTTCACCTTTTC+CGG - chr7_2:22578325-22578344 None:intergenic 55.0%
CGTCAAGCCACAAAGGATGC+CGG + chr7_2:22579444-22579463 Msa1053200:intron 55.0%
!! AAGGATGCCGGTGTCATTGC+AGG + chr7_2:22579456-22579475 Msa1053200:intron 55.0%
GGACAGTAACCAGTTGGCAG+AGG + chr7_2:22580017-22580036 Msa1053200:CDS 55.0%
ACTCATCAGCCTCTGCCAAC+TGG - chr7_2:22580029-22580048 None:intergenic 55.0%
!! AGGTGGAGGTGCTCCTGATA+TGG + chr7_2:22580110-22580129 Msa1053200:CDS 55.0%
GATGAAGTTCCTCCAGCAGC+AGG + chr7_2:22580147-22580166 Msa1053200:CDS 55.0%
! CGCAGGTCCTTCACCTTTTC+CGG - chr7_2:22578325-22578344 None:intergenic 55.0%
CGTCAAGCCACAAAGGATGC+CGG + chr7_2:22579444-22579463 Msa1053200:intron 55.0%
!! AAGGATGCCGGTGTCATTGC+AGG + chr7_2:22579456-22579475 Msa1053200:intron 55.0%
GGACAGTAACCAGTTGGCAG+AGG + chr7_2:22580017-22580036 Msa1053200:CDS 55.0%
ACTCATCAGCCTCTGCCAAC+TGG - chr7_2:22580029-22580048 None:intergenic 55.0%
!! AGGTGGAGGTGCTCCTGATA+TGG + chr7_2:22580110-22580129 Msa1053200:CDS 55.0%
GATGAAGTTCCTCCAGCAGC+AGG + chr7_2:22580147-22580166 Msa1053200:CDS 55.0%
ACGAGGAGCTGGAGGAATGC+CGG - chr7_2:22579662-22579681 None:intergenic 60.0%
TGAGGAACACCACGAGGAGC+TGG - chr7_2:22579673-22579692 None:intergenic 60.0%
!! GGAGGTGCTCCTGATATGGC+TGG + chr7_2:22580114-22580133 Msa1053200:CDS 60.0%
GGTGCTCCTGATATGGCTGG+TGG + chr7_2:22580117-22580136 Msa1053200:CDS 60.0%
GAAGTTCCTCCAGCAGCAGG+TGG + chr7_2:22580150-22580169 Msa1053200:CDS 60.0%
ACGAGGAGCTGGAGGAATGC+CGG - chr7_2:22579662-22579681 None:intergenic 60.0%
TGAGGAACACCACGAGGAGC+TGG - chr7_2:22579673-22579692 None:intergenic 60.0%
!! GGAGGTGCTCCTGATATGGC+TGG + chr7_2:22580114-22580133 Msa1053200:CDS 60.0%
GGTGCTCCTGATATGGCTGG+TGG + chr7_2:22580117-22580136 Msa1053200:CDS 60.0%
GAAGTTCCTCCAGCAGCAGG+TGG + chr7_2:22580150-22580169 Msa1053200:CDS 60.0%
GGCATTCCTCCAGCTCCTCG+TGG + chr7_2:22579661-22579680 Msa1053200:intron 65.0%
GGAACACCACGAGGAGCTGG+AGG - chr7_2:22579670-22579689 None:intergenic 65.0%
GGCATTCCTCCAGCTCCTCG+TGG + chr7_2:22579661-22579680 Msa1053200:intron 65.0%
GGAACACCACGAGGAGCTGG+AGG - chr7_2:22579670-22579689 None:intergenic 65.0%
CCAGCACCACCTGCTGCTGG+AGG - chr7_2:22580159-22580178 None:intergenic 70.0%
CCTCCAGCAGCAGGTGGTGC+TGG + chr7_2:22580156-22580175 Msa1053200:CDS 70.0%
GGACCAGCACCACCTGCTGC+TGG - chr7_2:22580162-22580181 None:intergenic 70.0%
CCAGCACCACCTGCTGCTGG+AGG - chr7_2:22580159-22580178 None:intergenic 70.0%
CCTCCAGCAGCAGGTGGTGC+TGG + chr7_2:22580156-22580175 Msa1053200:CDS 70.0%
GGACCAGCACCACCTGCTGC+TGG - chr7_2:22580162-22580181 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 22578318 22580203 22578318 ID=Msa1053200;Name=Msa1053200
chr7_2 mRNA 22578318 22580203 22578318 ID=Msa1053200-mRNA-1;Parent=Msa1053200;Name=Msa1053200-mRNA-1;_AED=0.45;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|238
chr7_2 exon 22578318 22578531 22578318 ID=Msa1053200-mRNA-1:exon:5094;Parent=Msa1053200-mRNA-1
chr7_2 exon 22579701 22580203 22579701 ID=Msa1053200-mRNA-1:exon:5095;Parent=Msa1053200-mRNA-1
chr7_2 CDS 22578318 22578531 22578318 ID=Msa1053200-mRNA-1:cds;Parent=Msa1053200-mRNA-1
chr7_2 CDS 22579701 22580203 22579701 ID=Msa1053200-mRNA-1:cds;Parent=Msa1053200-mRNA-1
Gene Sequence

>Msa1053200

ATGGCCGGAAAAGGTGAAGGACCTGCGATTGGAATAGATCTGGGAACGACATACTCTTGTGTTGGAGTATGGCAACACGATCGTGTTGAGATCATCGCCAATGATCAAGGAAACCGTACCACGCCGTCTTATGTTGCTTTTACTGATAGCGAAAGATTGATCGGTGATGCTGCTAAGAATCAGGTTGCGATGAACCCTGTTAACACTGTTTTCGTTTGCTTCGACATTGATGCCAATGGTATCTTGAATGTCTCTGCTGAGGACAAAACAACTGGGCAGAAGAACAAGATTACTATCACCAACGACAAAGGAAGGTTGTCTAAGGAAGAAATTGAGAAGATGGTTGAGGAAGCCGAGAAATACAAGGCAGAAGATGAGGAACACAAAAAGAAGGTTGATGCAAAGAATGCTTTGGAAAACTATGCTTACAACATGAGGAACACAATTAAAGATGAGAAGATTGGTTCAAAGCTTTCACCTGAGGACAAAAAGAAGATTGATGATGCAATTGACGCTGCAATTCAGTGGTTGGACAGTAACCAGTTGGCAGAGGCTGATGAGTTTGAAGATAAGATGAAGGAACTTGAGAGCCTTTGCAACCCAATCATTGCTAAGATGTATCAAGGTGGAGGTGCTCCTGATATGGCTGGTGGTATGGATGATGAAGTTCCTCCAGCAGCAGGTGGTGCTGGTCCTAAGATTGAAGAAGTCGATTAA
Protein sequence

>Msa1053200

MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPVNTVFVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVEEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIGSKLSPEDKKKIDDAIDAAIQWLDSNQLAEADEFEDKMKELESLCNPIIAKMYQGGGAPDMAGGMDDEVPPAAGGAGPKIEEVD*