Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010770 | Msa0506790 | 0.804434 | 2.164064e-49 | -8.615850e-47 |
| Msa0022750 | Msa0506790 | -0.840401 | 8.889099e-58 | -8.615850e-47 |
| Msa0027390 | Msa0506790 | 0.807622 | 4.618873e-50 | -8.615850e-47 |
| Msa0042550 | Msa0506790 | 0.823084 | 1.675952e-53 | -8.615850e-47 |
| Msa0054820 | Msa0506790 | 0.811406 | 7.113070e-51 | -8.615850e-47 |
| Msa0055070 | Msa0506790 | 0.830804 | 2.389290e-55 | -8.615850e-47 |
| Msa0056450 | Msa0506790 | 0.813974 | 1.950480e-51 | -8.615850e-47 |
| Msa0064110 | Msa0506790 | 0.808299 | 3.315654e-50 | -8.615850e-47 |
| Msa0078480 | Msa0506790 | 0.812783 | 3.563213e-51 | -8.615850e-47 |
| Msa0078610 | Msa0506790 | 0.804049 | 2.602459e-49 | -8.615850e-47 |
| Msa0092440 | Msa0506790 | 0.802737 | 4.868148e-49 | -8.615850e-47 |
| Msa0100160 | Msa0506790 | 0.817143 | 3.842776e-52 | -8.615850e-47 |
| Msa0101020 | Msa0506790 | 0.826616 | 2.460516e-54 | -8.615850e-47 |
| Msa0126230 | Msa0506790 | 0.801950 | 7.069942e-49 | -8.615850e-47 |
| Msa0143850 | Msa0506790 | 0.836781 | 7.651025e-57 | -8.615850e-47 |
| Msa0145110 | Msa0506790 | 0.813331 | 2.701330e-51 | -8.615850e-47 |
| Msa0160670 | Msa0506790 | 0.804975 | 1.669090e-49 | -8.615850e-47 |
| Msa0165300 | Msa0506790 | 0.807892 | 4.048001e-50 | -8.615850e-47 |
| Msa0178510 | Msa0506790 | 0.831760 | 1.390488e-55 | -8.615850e-47 |
| Msa0183420 | Msa0506790 | 0.804022 | 2.636936e-49 | -8.615850e-47 |
| Msa0186950 | Msa0506790 | 0.809522 | 1.815615e-50 | -8.615850e-47 |
| Msa0187030 | Msa0506790 | 0.815139 | 1.077374e-51 | -8.615850e-47 |
| Msa0193540 | Msa0506790 | 0.801794 | 7.609264e-49 | -8.615850e-47 |
| Msa0227230 | Msa0506790 | 0.831098 | 2.023090e-55 | -8.615850e-47 |
| Msa0236700 | Msa0506790 | -0.809524 | 1.813267e-50 | -8.615850e-47 |
| Msa0377440 | Msa0506790 | 0.809872 | 1.526255e-50 | -8.615850e-47 |
| Msa0388030 | Msa0506790 | -0.806103 | 9.677484e-50 | -8.615850e-47 |
| Msa0392200 | Msa0506790 | 0.804858 | 1.765121e-49 | -8.615850e-47 |
| Msa0394690 | Msa0506790 | 0.804217 | 2.401742e-49 | -8.615850e-47 |
| Msa0397820 | Msa0506790 | 0.827610 | 1.422914e-54 | -8.615850e-47 |
| Msa0410300 | Msa0506790 | 0.825338 | 4.950572e-54 | -8.615850e-47 |
| Msa0428050 | Msa0506790 | 0.803987 | 2.681602e-49 | -8.615850e-47 |
| Msa0436370 | Msa0506790 | 0.822145 | 2.770466e-53 | -8.615850e-47 |
| Msa0461590 | Msa0506790 | 0.815689 | 8.127078e-52 | -8.615850e-47 |
| Msa0468800 | Msa0506790 | 0.811778 | 5.905462e-51 | -8.615850e-47 |
| Msa0243250 | Msa0506790 | 0.819602 | 1.065579e-52 | -8.615850e-47 |
| Msa0269520 | Msa0506790 | 0.805439 | 1.333979e-49 | -8.615850e-47 |
| Msa0277420 | Msa0506790 | 0.804492 | 2.105062e-49 | -8.615850e-47 |
| Msa0312530 | Msa0506790 | 0.800402 | 1.465692e-48 | -8.615850e-47 |
| Msa0317270 | Msa0506790 | 0.808557 | 2.921196e-50 | -8.615850e-47 |
| Msa0318720 | Msa0506790 | 0.802500 | 5.447215e-49 | -8.615850e-47 |
| Msa0320800 | Msa0506790 | 0.801272 | 9.736203e-49 | -8.615850e-47 |
| Msa0506790 | Msa0506800 | 0.883339 | 4.878156e-71 | -8.615850e-47 |
| Msa0506790 | Msa0506810 | 0.843176 | 1.645727e-58 | -8.615850e-47 |
| Msa0506790 | Msa0506820 | 0.848646 | 5.367611e-60 | -8.615850e-47 |
| Msa0506790 | Msa0526940 | 0.820468 | 6.752610e-53 | -8.615850e-47 |
| Msa0506790 | Msa0573040 | 0.830439 | 2.935418e-55 | -8.615850e-47 |
| Msa0506790 | Msa0576680 | 0.812527 | 4.054742e-51 | -8.615850e-47 |
| Msa0506790 | Msa0576890 | 0.807535 | 4.821776e-50 | -8.615850e-47 |
| Msa0506790 | Msa0587190 | 0.803230 | 3.848774e-49 | -8.615850e-47 |
| Msa0506790 | Msa0624120 | 0.803362 | 3.614121e-49 | -8.615850e-47 |
| Msa0506790 | Msa0626220 | 0.801301 | 9.605833e-49 | -8.615850e-47 |
| Msa0506790 | Msa0626990 | 0.804081 | 2.563821e-49 | -8.615850e-47 |
| Msa0506790 | Msa0628500 | 0.801832 | 7.473944e-49 | -8.615850e-47 |
| Msa0506790 | Msa0641730 | 0.819783 | 9.688548e-53 | -8.615850e-47 |
| Msa0506790 | Msa0661320 | 0.802089 | 6.619676e-49 | -8.615850e-47 |
| Msa0506790 | Msa0675990 | 0.817910 | 2.580370e-52 | -8.615850e-47 |
| Msa0506790 | Msa0679100 | 0.801075 | 1.068410e-48 | -8.615850e-47 |
| Msa0506790 | Msa0679550 | 0.800584 | 1.345930e-48 | -8.615850e-47 |
| Msa0506790 | Msa0686080 | 0.809320 | 2.005756e-50 | -8.615850e-47 |
| Msa0506790 | Msa0689760 | 0.807323 | 5.347148e-50 | -8.615850e-47 |
| Msa0506790 | Msa0710270 | 0.819789 | 9.657216e-53 | -8.615850e-47 |
| Msa0506790 | Msa0715410 | 0.802072 | 6.673016e-49 | -8.615850e-47 |
| Msa0506790 | Msa0735160 | 0.819774 | 9.735456e-53 | -8.615850e-47 |
| Msa0506790 | Msa0756530 | 0.800776 | 1.229429e-48 | -8.615850e-47 |
| Msa0506790 | Msa0780280 | 0.805220 | 1.483261e-49 | -8.615850e-47 |
| Msa0506790 | Msa0795070 | 0.801972 | 6.994914e-49 | -8.615850e-47 |
| Msa0506790 | Msa0811130 | 0.812277 | 4.596729e-51 | -8.615850e-47 |
| Msa0506790 | Msa0821800 | 0.811486 | 6.834655e-51 | -8.615850e-47 |
| Msa0506790 | Msa0861830 | 0.813494 | 2.488343e-51 | -8.615850e-47 |
| Msa0506790 | Msa0868160 | 0.804184 | 2.439704e-49 | -8.615850e-47 |
| Msa0506790 | Msa0873860 | 0.832348 | 9.948955e-56 | -8.615850e-47 |
| Msa0506790 | Msa0902710 | 0.807376 | 5.208899e-50 | -8.615850e-47 |
| Msa0506790 | Msa0906690 | 0.806217 | 9.157773e-50 | -8.615850e-47 |
| Msa0506790 | Msa0939000 | 0.811086 | 8.348728e-51 | -8.615850e-47 |
| Msa0506790 | Msa0957870 | 0.819118 | 1.373501e-52 | -8.615850e-47 |
| Msa0506790 | Msa0957970 | 0.823607 | 1.264726e-53 | -8.615850e-47 |
| Msa0506790 | Msa0975940 | 0.825599 | 4.293755e-54 | -8.615850e-47 |
| Msa0506790 | Msa1008750 | 0.818414 | 1.985321e-52 | -8.615850e-47 |
| Msa0506790 | Msa1031820 | 0.802027 | 6.815033e-49 | -8.615850e-47 |
| Msa0506790 | Msa1032170 | 0.832966 | 6.988708e-56 | -8.615850e-47 |
| Msa0506790 | Msa1033970 | 0.818074 | 2.370170e-52 | -8.615850e-47 |
| Msa0506790 | Msa1040520 | 0.818342 | 2.061299e-52 | -8.615850e-47 |
| Msa0506790 | Msa1050700 | 0.803502 | 3.380912e-49 | -8.615850e-47 |
| Msa0506790 | Msa1053200 | 0.806578 | 7.685913e-50 | -8.615850e-47 |
| Msa0506790 | Msa1063420 | 0.807649 | 4.559987e-50 | -8.615850e-47 |
| Msa0506790 | Msa1070840 | 0.800929 | 1.144215e-48 | -8.615850e-47 |
| Msa0506790 | Msa1080960 | 0.808358 | 3.221152e-50 | -8.615850e-47 |
| Msa0506790 | Msa1096060 | 0.807753 | 4.332455e-50 | -8.615850e-47 |
| Msa0506790 | Msa1098270 | 0.800413 | 1.458130e-48 | -8.615850e-47 |
| Msa0506790 | Msa1113010 | 0.819179 | 1.330318e-52 | -8.615850e-47 |
| Msa0506790 | Msa1118760 | 0.809503 | 1.832138e-50 | -8.615850e-47 |
| Msa0506790 | Msa1127770 | 0.836173 | 1.092816e-56 | -8.615850e-47 |
| Msa0506790 | Msa1128330 | 0.801817 | 7.529647e-49 | -8.615850e-47 |
| Msa0506790 | Msa1133570 | 0.823134 | 1.630780e-53 | -8.615850e-47 |
| Msa0506790 | Msa1158660 | 0.825145 | 5.499476e-54 | -8.615850e-47 |
| Msa0506790 | Msa1169720 | 0.803854 | 2.857051e-49 | -8.615850e-47 |
| Msa0506790 | Msa1176270 | 0.800306 | 1.533182e-48 | -8.615850e-47 |
| Msa0506790 | Msa1215070 | 0.802841 | 4.633752e-49 | -8.615850e-47 |
| Msa0506790 | Msa1273120 | 0.808929 | 2.432831e-50 | -8.615850e-47 |
| Msa0506790 | Msa1286550 | 0.813263 | 2.795919e-51 | -8.615850e-47 |
| Msa0506790 | Msa1288450 | 0.800616 | 1.325413e-48 | -8.615850e-47 |
| Msa0506790 | Msa1299330 | 0.808779 | 2.618328e-50 | -8.615850e-47 |
| Msa0506790 | Msa1307550 | 0.842877 | 1.976563e-58 | -8.615850e-47 |
| Msa0506790 | Msa1333680 | 0.800668 | 1.294020e-48 | -8.615850e-47 |
| Msa0506790 | Msa1333730 | 0.801896 | 7.250681e-49 | -8.615850e-47 |
| Msa0506790 | Msa1338250 | 0.812843 | 3.456361e-51 | -8.615850e-47 |
| Msa0506790 | Msa1338830 | 0.800685 | 1.283720e-48 | -8.615850e-47 |
| Msa0506790 | Msa1341490 | 0.800631 | 1.316483e-48 | -8.615850e-47 |
| Msa0506790 | Msa1346750 | 0.800288 | 1.546243e-48 | -8.615850e-47 |
| Msa0506790 | Msa1349450 | 0.808164 | 3.543565e-50 | -8.615850e-47 |
| Msa0506790 | Msa1359920 | 0.816416 | 5.592170e-52 | -8.615850e-47 |
| Msa0506790 | Msa1366300 | 0.808382 | 3.184100e-50 | -8.615850e-47 |
| Msa0506790 | Msa1372150 | 0.827284 | 1.703352e-54 | -8.615850e-47 |
| Msa0506790 | Msa1379590 | 0.817537 | 3.133104e-52 | -8.615850e-47 |
| Msa0506790 | Msa1379850 | 0.821385 | 4.153982e-53 | -8.615850e-47 |
| Msa0506790 | Msa1392700 | 0.822603 | 2.168431e-53 | -8.615850e-47 |
| Msa0506790 | Msa1400070 | 0.818470 | 1.927868e-52 | -8.615850e-47 |
| Msa0506790 | Msa1420250 | 0.807869 | 4.094969e-50 | -8.615850e-47 |
| Msa0506790 | Msa1424640 | 0.818300 | 2.106785e-52 | -8.615850e-47 |
| Msa0506790 | Msa1433220 | 0.819129 | 1.365421e-52 | -8.615850e-47 |
| Msa0506790 | Msa1445220 | 0.817126 | 3.876768e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 170 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGCTTTCACTTCTTTAT+TGG | 0.134062 | 3_4:+53437948 | Msa0506790:CDS |
| CAATTATGCATGTTGTATTT+TGG | 0.149641 | 3_4:-53436863 | Msa0506800:CDS |
| AAAATAAGCCTCTTCAAATT+TGG | 0.200181 | 3_4:+53435738 | Msa0506790:five_prime_UTR |
| GTGAGCTTCTTTATCTCTAT+TGG | 0.212618 | 3_4:+53436233 | Msa0506790:five_prime_UTR |
| ATAGATAGAGATGCTTTATT+TGG | 0.230433 | 3_4:-53435609 | Msa0506800:CDS |
| CATGATCTTCATGCATTATA+TGG | 0.230836 | 3_4:+53436594 | Msa0506790:five_prime_UTR |
| TTGAAATGAGAAGCAATTTC+AGG | 0.233622 | 3_4:+53437664 | Msa0506790:five_prime_UTR |
| GAAGATTGTTGACAGGGTTT+AGG | 0.247709 | 3_4:-53438068 | Msa0506800:CDS |
| AAAATGCAAAAGGGTATTAT+TGG | 0.275187 | 3_4:-53436134 | Msa0506800:CDS |
| AAGATTGTTGACAGGGTTTA+GGG | 0.278623 | 3_4:-53438067 | Msa0506800:CDS |
| TTCACAATATATTCAAGTTT+TGG | 0.283089 | 3_4:+53435819 | Msa0506790:five_prime_UTR |
| GTCTAACCAAATCATCTCTT+TGG | 0.290630 | 3_4:+53437617 | Msa0506790:five_prime_UTR |
| CAAATTGAGTACTCTAAGAT+AGG | 0.291453 | 3_4:+53435875 | Msa0506790:five_prime_UTR |
| AGAAGATTACCCAAGTTCTT+AGG | 0.293325 | 3_4:+53436371 | Msa0506790:five_prime_UTR |
| TGTTCTTCAATCTTCCCTTT+AGG | 0.297557 | 3_4:-53435213 | None:intergenic |
| TGGGGTAACACCTTCAATTC+AGG | 0.298027 | 3_4:+53435558 | Msa0506790:five_prime_UTR |
| CGCATGTTGGTTTCTGTTGT+TGG | 0.303552 | 3_4:-53437571 | Msa0506800:CDS |
| TGCATCTTCTCCAGACCCTC+TGG | 0.312201 | 3_4:+53437379 | Msa0506790:five_prime_UTR |
| GTCACCAAATCTGGCTGCTT+TGG | 0.326011 | 3_4:+53437687 | Msa0506790:five_prime_UTR |
| AGAGTTGATACAAACAAGTT+TGG | 0.334054 | 3_4:-53436720 | Msa0506800:CDS |
| CAACATGATAAAGTGACTTC+AGG | 0.334375 | 3_4:+53437794 | Msa0506790:five_prime_UTR |
| TGAGTCCCAAAGAGATGATT+TGG | 0.334438 | 3_4:-53437623 | Msa0506800:CDS |
| GACTAACAAGGTTTCCTGAT+TGG | 0.335636 | 3_4:-53435845 | Msa0506800:CDS |
| AATTTCAGGGTCACCAAATC+TGG | 0.341955 | 3_4:+53437678 | Msa0506790:five_prime_UTR |
| AGTAAGTCTCTTACAATTGA+TGG | 0.344717 | 3_4:+53436820 | Msa0506790:five_prime_UTR |
| AAACTATCAATGAAATATTC+AGG | 0.346600 | 3_4:+53436455 | Msa0506790:five_prime_UTR |
| TCCTTTGTTATTACTAATCA+AGG | 0.348795 | 3_4:+53437249 | Msa0506790:five_prime_UTR |
| TTGAGTCAATTAAGGAAGTT+AGG | 0.350689 | 3_4:-53436032 | Msa0506800:CDS |
| TCAATAAGTTGAGTCAATTA+AGG | 0.352081 | 3_4:-53436040 | Msa0506800:CDS |
| GGGACCAAAGCAGCCAGATT+TGG | 0.352450 | 3_4:-53437691 | Msa0506800:CDS |
| ACTTAGAAACATTGGATCTA+AGG | 0.365986 | 3_4:-53436277 | Msa0506800:CDS |
| GACATCAAATTATCAGTTGC+AGG | 0.367150 | 3_4:-53437757 | Msa0506800:CDS |
| AACAGATCCCATGCATTGTT+TGG | 0.370664 | 3_4:+53437133 | Msa0506790:five_prime_UTR |
| AGAACTTAGTCTATTTAATC+TGG | 0.371933 | 3_4:+53435638 | Msa0506790:five_prime_UTR |
| TTAAGTACCTCTTTGATTCA+AGG | 0.373328 | 3_4:+53437323 | Msa0506790:five_prime_UTR |
| TGATGAAATATTAAATGAAA+TGG | 0.391574 | 3_4:-53438148 | None:intergenic |
| TTGTTGCGTCATATAATCAT+TGG | 0.392190 | 3_4:-53436641 | Msa0506800:CDS |
| AGATTCTTCTCTGAGCTGTT+TGG | 0.400058 | 3_4:+53437924 | Msa0506790:CDS |
| TGAGCCTATCCCAGAGGGTC+TGG | 0.400445 | 3_4:-53437389 | Msa0506800:CDS |
| TCTATGTTGAACTTCACAAC+TGG | 0.402294 | 3_4:-53436161 | Msa0506800:CDS |
| GAGAAGCGTAACATAGTTAG+AGG | 0.408018 | 3_4:+53435293 | Msa0506790:five_prime_UTR |
| TTGCGGGATGATGCATTTGC+TGG | 0.409328 | 3_4:-53435717 | Msa0506800:CDS |
| GAATTATGTTCCTAAGAACT+TGG | 0.410247 | 3_4:-53436381 | Msa0506800:CDS |
| CAGTAATATTTAGAGATTCA+AGG | 0.415618 | 3_4:+53435946 | Msa0506790:five_prime_UTR |
| AGAGGCGTGCGGGGAACATA+TGG | 0.421566 | 3_4:-53436005 | Msa0506800:CDS |
| GTACTAGTTTGTTATAATGT+AGG | 0.423618 | 3_4:-53435411 | Msa0506800:CDS |
| CATTTCAATGAAGATGTTGT+GGG | 0.438963 | 3_4:-53437649 | Msa0506800:CDS |
| CAGCAAATCCAAGGAATTGA+AGG | 0.441234 | 3_4:+53435514 | Msa0506790:five_prime_UTR |
| CAAAATCTAATGAAATTAGA+TGG | 0.441262 | 3_4:-53436953 | Msa0506800:CDS |
| TTGGTTTCTGTTGTTGGCAT+GGG | 0.442635 | 3_4:-53437565 | Msa0506800:CDS |
| GTTGGTTTCTGTTGTTGGCA+TGG | 0.446503 | 3_4:-53437566 | Msa0506800:CDS |
| CTTTGAATTTAGAGTTGAGT+TGG | 0.446518 | 3_4:+53435354 | Msa0506790:five_prime_UTR |
| ATGCTATCAACTAATTCAAC+TGG | 0.447547 | 3_4:+53435486 | Msa0506790:five_prime_UTR |
| TTACAACATTCCTGAATTGA+AGG | 0.450422 | 3_4:-53435568 | Msa0506800:CDS |
| CTTCCTTCTTCCGCTACAAA+TGG | 0.451208 | 3_4:+53438087 | Msa0506790:CDS |
| TCTAACCAAATCATCTCTTT+GGG | 0.452485 | 3_4:+53437618 | Msa0506790:five_prime_UTR |
| GGATTTGTTACGTGCGTTGA+GGG | 0.458598 | 3_4:-53436779 | Msa0506800:CDS |
| TTCTTCCGCTACAAATGGTA+AGG | 0.463997 | 3_4:+53438092 | Msa0506790:CDS |
| CAATTGATGGTGTTGTGCTC+CGG | 0.467694 | 3_4:+53436833 | Msa0506790:five_prime_UTR |
| TAATGTGGTTTGATGATGTT+CGG | 0.467879 | 3_4:-53437303 | Msa0506800:CDS |
| GTTTCTGATGCTAAAGGAGT+TGG | 0.468060 | 3_4:-53435667 | Msa0506800:CDS |
| CCACTTGCAATTGTGGTCAT+TGG | 0.468145 | 3_4:-53437028 | Msa0506800:CDS |
| GTTGTTGGCATGGGAGGACT+CGG | 0.471874 | 3_4:-53437556 | Msa0506800:CDS |
| GATGCAAACGTTCACCTAAA+GGG | 0.472377 | 3_4:+53435199 | Msa0506790:five_prime_UTR |
| TTATATGACGCAACAAATCA+TGG | 0.474674 | 3_4:+53436648 | Msa0506790:five_prime_UTR |
| AGTAGGTTACCAACAGATCT+AGG | 0.475903 | 3_4:+53436302 | Msa0506790:five_prime_UTR |
| TCATTTCAATGAAGATGTTG+TGG | 0.477529 | 3_4:-53437650 | Msa0506800:CDS |
| AGATGATTTGGTTAGACGCT+TGG | 0.477892 | 3_4:-53437611 | Msa0506800:CDS |
| TGTAGCTTGTGAATATGAAC+AGG | 0.479382 | 3_4:+53437166 | Msa0506790:five_prime_UTR |
| GTCAACCACTCTGGACTCAT+AGG | 0.480108 | 3_4:-53437850 | Msa0506800:CDS |
| TTACCATTTGTAGCGGAAGA+AGG | 0.482580 | 3_4:-53438090 | Msa0506800:CDS |
| CCAATAAAGAAGTGAAAGCT+TGG | 0.483207 | 3_4:-53437948 | Msa0506800:CDS |
| GACACAAAGGCTGCTGAAGA+AGG | 0.483842 | 3_4:-53437979 | Msa0506800:CDS |
| AGATGCAAACGTTCACCTAA+AGG | 0.486717 | 3_4:+53435198 | Msa0506790:five_prime_UTR |
| TTTCTAGTGTTGACTTCGAT+GGG | 0.488157 | 3_4:-53436691 | Msa0506800:CDS |
| TTAAGGAAGTTAGGCATAAG+AGG | 0.489190 | 3_4:-53436023 | Msa0506800:CDS |
| GATTTGGTTAGACGCTTGGT+GGG | 0.490534 | 3_4:-53437607 | Msa0506800:CDS |
| TGATTTGGTTAGACGCTTGG+TGG | 0.491400 | 3_4:-53437608 | Msa0506800:CDS |
| GTTTCTAGTGTTGACTTCGA+TGG | 0.491700 | 3_4:-53436692 | Msa0506800:CDS |
| GATAAAGTGACTTCAGGGTT+GGG | 0.495288 | 3_4:+53437800 | Msa0506790:five_prime_UTR |
| CATGCATTGTTTGGTGGCAA+AGG | 0.496890 | 3_4:+53437142 | Msa0506790:five_prime_UTR |
| AACATGATAAAGTGACTTCA+GGG | 0.501851 | 3_4:+53437795 | Msa0506790:five_prime_UTR |
| ACGGTTCTTCCTAGATCTGT+TGG | 0.501999 | 3_4:-53436311 | Msa0506800:CDS |
| TTCTCCAGACCCTCTGGGAT+AGG | 0.503362 | 3_4:+53437385 | Msa0506790:five_prime_UTR |
| ATTTGGTTAGACGCTTGGTG+GGG | 0.503513 | 3_4:-53437606 | Msa0506800:CDS |
| TGAAATGAGAAGCAATTTCA+GGG | 0.505268 | 3_4:+53437665 | Msa0506790:five_prime_UTR |
| CCTACTGAACTTAGAAACAT+TGG | 0.505301 | 3_4:-53436285 | Msa0506800:CDS |
| AATTATGTTCCTAAGAACTT+GGG | 0.506005 | 3_4:-53436380 | Msa0506800:CDS |
| CCAATGTTTCTAAGTTCAGT+AGG | 0.506635 | 3_4:+53436285 | Msa0506790:five_prime_UTR |
| ATTATAACAAACTAGTACAC+GGG | 0.507904 | 3_4:+53435416 | Msa0506790:five_prime_UTR |
| TGTGTCAGCATCCTTGAGCA+AGG | 0.509139 | 3_4:+53437996 | Msa0506790:CDS |
| AATGAAATGGCAGAAAATCC+AGG | 0.510991 | 3_4:-53438135 | None:intergenic |
| GAAGAAGGAAGATTGTTGAC+AGG | 0.512077 | 3_4:-53438075 | Msa0506800:CDS |
| GTTTCTGTTGTTGGCATGGG+AGG | 0.512724 | 3_4:-53437562 | Msa0506800:CDS |
| AATCAAAGAGGTACTTAATG+TGG | 0.513804 | 3_4:-53437318 | Msa0506800:CDS |
| TGATAAAGTGACTTCAGGGT+TGG | 0.514918 | 3_4:+53437799 | Msa0506790:five_prime_UTR |
| CGGAAAGAAGAATTTGCTGA+TGG | 0.515411 | 3_4:-53437283 | Msa0506800:CDS |
| AGATCCCATGCATTGTTTGG+TGG | 0.518964 | 3_4:+53437136 | Msa0506790:five_prime_UTR |
| TTTGGTTAGACGCTTGGTGG+GGG | 0.520808 | 3_4:-53437605 | Msa0506800:CDS |
| CTATGTTGAACTTCACAACT+GGG | 0.520896 | 3_4:-53436160 | Msa0506800:CDS |
| GTTAGGCATAAGAGGCGTGC+GGG | 0.523940 | 3_4:-53436015 | Msa0506800:CDS |
| CTTTGCCACCAAACAATGCA+TGG | 0.525027 | 3_4:-53437141 | Msa0506800:CDS |
| CAGCATCCTTGAGCAAGGCT+TGG | 0.525394 | 3_4:+53438001 | Msa0506790:CDS |
| AGAAAGACGGAGGATGCCAT+TGG | 0.527852 | 3_4:-53435455 | Msa0506800:CDS |
| AGTTGCTATAGAAAAGCGTC+TGG | 0.528556 | 3_4:+53436550 | Msa0506790:five_prime_UTR |
| TCTAAGTCACACAAAAGTTA+CGG | 0.530607 | 3_4:-53436330 | Msa0506800:CDS |
| AGAATTTGCCAAATTTGAAG+AGG | 0.531710 | 3_4:-53435746 | Msa0506800:CDS |
| AGGGCTACCACTTGCAATTG+TGG | 0.540108 | 3_4:-53437035 | Msa0506800:CDS |
| GATCATGAACAAGTCACAGT+TGG | 0.542503 | 3_4:-53436578 | Msa0506800:CDS |
| AAATTGAGTACTCTAAGATA+GGG | 0.543416 | 3_4:+53435876 | Msa0506790:five_prime_UTR |
| ACTCAATCCTGAGTGGAGAA+AGG | 0.546550 | 3_4:-53436981 | Msa0506800:CDS |
| GCATCTTCTCCAGACCCTCT+GGG | 0.553222 | 3_4:+53437380 | Msa0506790:five_prime_UTR |
| TTGGTTAGACGCTTGGTGGG+GGG | 0.556473 | 3_4:-53437604 | Msa0506800:CDS |
| ATTTGAAAGCTAGACTAACA+AGG | 0.558203 | 3_4:-53435857 | Msa0506800:CDS |
| GGAAAGAAGAATTTGCTGAT+GGG | 0.559813 | 3_4:-53437282 | Msa0506800:CDS |
| TGACTCGCCTTTCTCCACTC+AGG | 0.560389 | 3_4:+53436974 | Msa0506790:five_prime_UTR |
| GCTCAAGGATGCTGACACAA+AGG | 0.562111 | 3_4:-53437992 | Msa0506800:CDS |
| AGGAGGGTTTCTGATGCTAA+AGG | 0.565300 | 3_4:-53435673 | Msa0506800:CDS |
| CTCAACTCTAAATTCAAAGT+AGG | 0.569892 | 3_4:-53435350 | None:intergenic |
| TAAAGAAGCTCACAAAGCTA+AGG | 0.572515 | 3_4:-53436223 | Msa0506800:CDS |
| CATTATAACAAACTAGTACA+CGG | 0.577733 | 3_4:+53435415 | Msa0506790:five_prime_UTR |
| AGAAACCAACATGCGCTCAC+TGG | 0.580048 | 3_4:+53437579 | Msa0506790:five_prime_UTR |
| TTGAGAAACAACAGTAACTC+AGG | 0.582873 | 3_4:-53436515 | Msa0506800:CDS |
| GTAAGAGACTTACTATGCAA+TGG | 0.582997 | 3_4:-53436811 | Msa0506800:CDS |
| CCTTTCAAAGAATCAAAACA+TGG | 0.583776 | 3_4:-53438200 | None:intergenic |
| CTGATACAAAATGCAAGTCA+AGG | 0.585132 | 3_4:+53435904 | Msa0506790:five_prime_UTR |
| TATATTGTGAAGCTAGTGCT+TGG | 0.587544 | 3_4:-53435807 | Msa0506800:CDS |
| AGGATTTGTTACGTGCGTTG+AGG | 0.589820 | 3_4:-53436780 | Msa0506800:CDS |
| AAGAAGGAAGATTGTTGACA+GGG | 0.594039 | 3_4:-53438074 | Msa0506800:CDS |
| TACATTGACTACTCATGTGA+GGG | 0.595141 | 3_4:-53437350 | Msa0506800:CDS |
| TGATTACTATTACATAAATG+TGG | 0.598342 | 3_4:-53437881 | Msa0506800:CDS |
| TGCTGCATGCATCATTCTAG+TGG | 0.599475 | 3_4:+53437210 | Msa0506790:five_prime_UTR |
| AGATTGTTGACAGGGTTTAG+GGG | 0.601036 | 3_4:-53438066 | Msa0506800:CDS |
| GAATATGATTGATAATCCAA+TGG | 0.607218 | 3_4:+53435439 | Msa0506790:five_prime_UTR |
| AAGGCTGCTGAAGAAGGAGG+AGG | 0.608136 | 3_4:-53437973 | Msa0506800:CDS |
| TGCTGCAAAAGTAATGACCC+TGG | 0.608436 | 3_4:+53438117 | Msa0506790:CDS |
| CTGGCATATCAGCAAATCCA+AGG | 0.609743 | 3_4:+53435505 | Msa0506790:five_prime_UTR |
| TTGAGTACTCTAAGATAGGG+TGG | 0.612147 | 3_4:+53435879 | Msa0506790:five_prime_UTR |
| GAGCATCCAAGCCTTGCTCA+AGG | 0.613211 | 3_4:-53438007 | Msa0506800:CDS |
| TTTAGAGTTGAGTTGGAATG+CGG | 0.613305 | 3_4:+53435361 | Msa0506790:five_prime_UTR |
| ATGAAATGGCAGAAAATCCA+GGG | 0.614235 | 3_4:-53438134 | None:intergenic |
| GGGAACCAGTGAGCGCATGT+TGG | 0.616799 | 3_4:-53437584 | Msa0506800:CDS |
| TTTGCCACCAAACAATGCAT+GGG | 0.620006 | 3_4:-53437140 | Msa0506800:CDS |
| ACAAAGGCTGCTGAAGAAGG+AGG | 0.622894 | 3_4:-53437976 | Msa0506800:CDS |
| TATGATAAAGAAGCTTTGTG+AGG | 0.622999 | 3_4:-53437419 | Msa0506800:CDS |
| ACTATGCAATGGATAGCTGA+AGG | 0.626102 | 3_4:-53436800 | Msa0506800:CDS |
| GGATCTAAGGCAAACTCAAG+TGG | 0.630227 | 3_4:-53436264 | Msa0506800:CDS |
| GCAATCCTTACCATTTGTAG+CGG | 0.633114 | 3_4:-53438097 | Msa0506800:CDS |
| ATTTCAATGAAGATGTTGTG+GGG | 0.633223 | 3_4:-53437648 | Msa0506800:CDS |
| CCAATGACCACAATTGCAAG+TGG | 0.634190 | 3_4:+53437028 | Msa0506790:five_prime_UTR |
| AGTAAAAGCGACAATCAAAG+TGG | 0.634215 | 3_4:+53437485 | Msa0506790:five_prime_UTR |
| AGCATTGATCGAGAGAAAGA+CGG | 0.634595 | 3_4:-53435468 | Msa0506800:CDS |
| AGCAATGAGCCTATCCCAGA+GGG | 0.637447 | 3_4:-53437394 | Msa0506800:CDS |
| AAATATTACTGCGATAACTG+AGG | 0.637831 | 3_4:-53435934 | Msa0506800:CDS |
| TTACATTGACTACTCATGTG+AGG | 0.648464 | 3_4:-53437351 | Msa0506800:CDS |
| TTAGGCATAAGAGGCGTGCG+GGG | 0.659908 | 3_4:-53436014 | Msa0506800:CDS |
| AAACTATACTCAATCCTGAG+TGG | 0.662185 | 3_4:-53436988 | Msa0506800:CDS |
| AGTTAGGCATAAGAGGCGTG+CGG | 0.664970 | 3_4:-53436016 | Msa0506800:CDS |
| GGGAACACCTTGAATCAAAG+AGG | 0.668393 | 3_4:-53437330 | Msa0506800:CDS |
| TTTGCAACAAGACATTTAGA+GGG | 0.673084 | 3_4:-53437111 | Msa0506800:CDS |
| AAATTCTTCAGAGAGTCTAG+TGG | 0.677961 | 3_4:+53435762 | Msa0506790:five_prime_UTR |
| GCCTTGATTAGTAATAACAA+AGG | 0.687157 | 3_4:-53437250 | Msa0506800:CDS |
| ACTATGTTACGCTTCTCATG+CGG | 0.692252 | 3_4:-53435287 | None:intergenic |
| AGCTTCTCAATTCAACACTG+CGG | 0.693306 | 3_4:-53437458 | Msa0506800:CDS |
| TATGTTGAACTTCACAACTG+GGG | 0.702005 | 3_4:-53436159 | Msa0506800:CDS |
| ATGCATAATTGTAAATGACG+AGG | 0.711341 | 3_4:+53436875 | Msa0506790:five_prime_UTR |
| ATTGATCGAGAGAAAGACGG+AGG | 0.717267 | 3_4:-53435465 | Msa0506800:CDS |
| TTATAACAAACTAGTACACG+GGG | 0.725452 | 3_4:+53435417 | Msa0506790:five_prime_UTR |
| TAGCAATGAGCCTATCCCAG+AGG | 0.739717 | 3_4:-53437395 | Msa0506800:CDS |
| GTAAGCCTATGAGTCCAGAG+TGG | 0.797805 | 3_4:+53437845 | Msa0506790:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTCATTGAAATATAA+AGG | - | chr3_4:53435327-53435346 | None:intergenic | 15.0% |
| !!! | TTTGCAAAATCTTTATTTTT+TGG | - | chr3_4:53436102-53436121 | Msa0506800:CDS | 15.0% |
| !! | TTTATCATAAAAATTATGCA+GGG | - | chr3_4:53436193-53436212 | Msa0506800:CDS | 15.0% |
| !! | TGATGAAATATTAAATGAAA+TGG | - | chr3_4:53438151-53438170 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTGTACTTTGTT+TGG | + | chr3_4:53438257-53438276 | Msa0506790:three_prime_UTR | 15.0% |
| !!! | AATTGAAAAAGAAAGTACTT+TGG | + | chr3_4:53435237-53435256 | Msa0506790:five_prime_UTR | 20.0% |
| !!! | TTCACAATATATTCAAGTTT+TGG | + | chr3_4:53435819-53435838 | Msa0506790:five_prime_UTR | 20.0% |
| !! | GTTTATCATAAAAATTATGC+AGG | - | chr3_4:53436194-53436213 | Msa0506800:CDS | 20.0% |
| !! | AAACTATCAATGAAATATTC+AGG | + | chr3_4:53436455-53436474 | Msa0506790:five_prime_UTR | 20.0% |
| !! | CAAAATCTAATGAAATTAGA+TGG | - | chr3_4:53436956-53436975 | Msa0506800:CDS | 20.0% |
| !! | TGATTACTATTACATAAATG+TGG | - | chr3_4:53437884-53437903 | Msa0506800:CDS | 20.0% |
| !!! | GTACTAGTTTGTTATAATGT+AGG | - | chr3_4:53435414-53435433 | Msa0506800:CDS | 25.0% |
| ! | CATTATAACAAACTAGTACA+CGG | + | chr3_4:53435415-53435434 | Msa0506790:five_prime_UTR | 25.0% |
| ! | ATTATAACAAACTAGTACAC+GGG | + | chr3_4:53435416-53435435 | Msa0506790:five_prime_UTR | 25.0% |
| !! | GAATATGATTGATAATCCAA+TGG | + | chr3_4:53435439-53435458 | Msa0506790:five_prime_UTR | 25.0% |
| !! | ATAGATAGAGATGCTTTATT+TGG | - | chr3_4:53435612-53435631 | Msa0506800:CDS | 25.0% |
| ! | AGAACTTAGTCTATTTAATC+TGG | + | chr3_4:53435638-53435657 | Msa0506790:five_prime_UTR | 25.0% |
| ! | AAAATAAGCCTCTTCAAATT+TGG | + | chr3_4:53435738-53435757 | Msa0506790:five_prime_UTR | 25.0% |
| !!! | AAATTGAGTACTCTAAGATA+GGG | + | chr3_4:53435876-53435895 | Msa0506790:five_prime_UTR | 25.0% |
| ! | CAGTAATATTTAGAGATTCA+AGG | + | chr3_4:53435946-53435965 | Msa0506790:five_prime_UTR | 25.0% |
| !! | TCAATAAGTTGAGTCAATTA+AGG | - | chr3_4:53436043-53436062 | Msa0506800:CDS | 25.0% |
| !!! | AATCTTTATTTTTTGGAAGC+AGG | - | chr3_4:53436095-53436114 | Msa0506800:CDS | 25.0% |
| !!! | AAAATGCAAAAGGGTATTAT+TGG | - | chr3_4:53436137-53436156 | Msa0506800:CDS | 25.0% |
| ! | AATTATGTTCCTAAGAACTT+GGG | - | chr3_4:53436383-53436402 | Msa0506800:CDS | 25.0% |
| !! | CAATTATGCATGTTGTATTT+TGG | - | chr3_4:53436866-53436885 | Msa0506800:CDS | 25.0% |
| !! | GTCTAACAATGATTTTATCT+CGG | - | chr3_4:53436916-53436935 | Msa0506800:CDS | 25.0% |
| ! | AAGAACATTGTTCAAAAATG+TGG | - | chr3_4:53437061-53437080 | Msa0506800:CDS | 25.0% |
| !! | ACATTTTTGAACAATGTTCT+TGG | + | chr3_4:53437060-53437079 | Msa0506790:five_prime_UTR | 25.0% |
| !!! | TCCTTTGTTATTACTAATCA+AGG | + | chr3_4:53437249-53437268 | Msa0506790:five_prime_UTR | 25.0% |
| !!! | TAAGTATGTTTTTGATGAAC+AGG | - | chr3_4:53437521-53437540 | Msa0506800:CDS | 25.0% |
| !! | TAGATTTTCAATCTGAAAGA+GGG | - | chr3_4:53437714-53437733 | Msa0506800:CDS | 25.0% |
| !! | TTAGATTTTCAATCTGAAAG+AGG | - | chr3_4:53437715-53437734 | Msa0506800:CDS | 25.0% |
| !! | GGATCATGTGAAAAATATTT+TGG | + | chr3_4:53437821-53437840 | Msa0506790:five_prime_UTR | 25.0% |
| !!! | TATTTTTGTACTTTGTTTGG+TGG | + | chr3_4:53438260-53438279 | Msa0506790:three_prime_UTR | 25.0% |
| CTCAACTCTAAATTCAAAGT+AGG | - | chr3_4:53435353-53435372 | None:intergenic | 30.0% | |
| ! | CTTTGAATTTAGAGTTGAGT+TGG | + | chr3_4:53435354-53435373 | Msa0506790:five_prime_UTR | 30.0% |
| !! | CAAGTTTTGATGAATATGAG+TGG | - | chr3_4:53435389-53435408 | Msa0506800:CDS | 30.0% |
| TTATAACAAACTAGTACACG+GGG | + | chr3_4:53435417-53435436 | Msa0506790:five_prime_UTR | 30.0% | |
| ATGCTATCAACTAATTCAAC+TGG | + | chr3_4:53435486-53435505 | Msa0506790:five_prime_UTR | 30.0% | |
| TTGAAAAACCTTCAATTCCT+TGG | - | chr3_4:53435525-53435544 | Msa0506800:CDS | 30.0% | |
| !!! | GAAGGTTTTTCAAGTTTTGA+AGG | + | chr3_4:53435532-53435551 | Msa0506790:five_prime_UTR | 30.0% |
| !!! | TTTTCAAGTTTTGAAGGTCT+TGG | + | chr3_4:53435538-53435557 | Msa0506790:five_prime_UTR | 30.0% |
| !!! | TTTCAAGTTTTGAAGGTCTT+GGG | + | chr3_4:53435539-53435558 | Msa0506790:five_prime_UTR | 30.0% |
| TTACAACATTCCTGAATTGA+AGG | - | chr3_4:53435571-53435590 | Msa0506800:CDS | 30.0% | |
| !! | GAAAGTTTGCATTTTCAAGA+AGG | - | chr3_4:53435696-53435715 | Msa0506800:CDS | 30.0% |
| !!! | ATTTGAAGAGGCTTATTTTG+CGG | - | chr3_4:53435737-53435756 | Msa0506800:CDS | 30.0% |
| AGAATTTGCCAAATTTGAAG+AGG | - | chr3_4:53435749-53435768 | Msa0506800:CDS | 30.0% | |
| ATTTGAAAGCTAGACTAACA+AGG | - | chr3_4:53435860-53435879 | Msa0506800:CDS | 30.0% | |
| !! | CAAATTGAGTACTCTAAGAT+AGG | + | chr3_4:53435875-53435894 | Msa0506790:five_prime_UTR | 30.0% |
| AAATATTACTGCGATAACTG+AGG | - | chr3_4:53435937-53435956 | Msa0506800:CDS | 30.0% | |
| TTGAGTCAATTAAGGAAGTT+AGG | - | chr3_4:53436035-53436054 | Msa0506800:CDS | 30.0% | |
| ACTTAGAAACATTGGATCTA+AGG | - | chr3_4:53436280-53436299 | Msa0506800:CDS | 30.0% | |
| TCTAAGTCACACAAAAGTTA+CGG | - | chr3_4:53436333-53436352 | Msa0506800:CDS | 30.0% | |
| GAATTATGTTCCTAAGAACT+TGG | - | chr3_4:53436384-53436403 | Msa0506800:CDS | 30.0% | |
| CATGATCTTCATGCATTATA+TGG | + | chr3_4:53436594-53436613 | Msa0506790:five_prime_UTR | 30.0% | |
| TTGTTGCGTCATATAATCAT+TGG | - | chr3_4:53436644-53436663 | Msa0506800:CDS | 30.0% | |
| TTATATGACGCAACAAATCA+TGG | + | chr3_4:53436648-53436667 | Msa0506790:five_prime_UTR | 30.0% | |
| !! | AGAGTTGATACAAACAAGTT+TGG | - | chr3_4:53436723-53436742 | Msa0506800:CDS | 30.0% |
| AGTAAGTCTCTTACAATTGA+TGG | + | chr3_4:53436820-53436839 | Msa0506790:five_prime_UTR | 30.0% | |
| !!! | GTTGTATTTTGGTATCTATC+CGG | - | chr3_4:53436855-53436874 | Msa0506800:CDS | 30.0% |
| ATGCATAATTGTAAATGACG+AGG | + | chr3_4:53436875-53436894 | Msa0506790:five_prime_UTR | 30.0% | |
| ACATTGTTCAAAAATGTGGA+GGG | - | chr3_4:53437057-53437076 | Msa0506800:CDS | 30.0% | |
| AACATTGTTCAAAAATGTGG+AGG | - | chr3_4:53437058-53437077 | Msa0506800:CDS | 30.0% | |
| TTTGCAACAAGACATTTAGA+GGG | - | chr3_4:53437114-53437133 | Msa0506800:CDS | 30.0% | |
| ! | TTTTGCAACAAGACATTTAG+AGG | - | chr3_4:53437115-53437134 | Msa0506800:CDS | 30.0% |
| GCCTTGATTAGTAATAACAA+AGG | - | chr3_4:53437253-53437272 | Msa0506800:CDS | 30.0% | |
| !! | TAATGTGGTTTGATGATGTT+CGG | - | chr3_4:53437306-53437325 | Msa0506800:CDS | 30.0% |
| !! | AATCAAAGAGGTACTTAATG+TGG | - | chr3_4:53437321-53437340 | Msa0506800:CDS | 30.0% |
| TTAAGTACCTCTTTGATTCA+AGG | + | chr3_4:53437323-53437342 | Msa0506790:five_prime_UTR | 30.0% | |
| ! | TATGATAAAGAAGCTTTGTG+AGG | - | chr3_4:53437422-53437441 | Msa0506800:CDS | 30.0% |
| TCTAACCAAATCATCTCTTT+GGG | + | chr3_4:53437618-53437637 | Msa0506790:five_prime_UTR | 30.0% | |
| ATTTCAATGAAGATGTTGTG+GGG | - | chr3_4:53437651-53437670 | Msa0506800:CDS | 30.0% | |
| CATTTCAATGAAGATGTTGT+GGG | - | chr3_4:53437652-53437671 | Msa0506800:CDS | 30.0% | |
| TCATTTCAATGAAGATGTTG+TGG | - | chr3_4:53437653-53437672 | Msa0506800:CDS | 30.0% | |
| TTGAAATGAGAAGCAATTTC+AGG | + | chr3_4:53437664-53437683 | Msa0506790:five_prime_UTR | 30.0% | |
| TGAAATGAGAAGCAATTTCA+GGG | + | chr3_4:53437665-53437684 | Msa0506790:five_prime_UTR | 30.0% | |
| AACATGATAAAGTGACTTCA+GGG | + | chr3_4:53437795-53437814 | Msa0506790:five_prime_UTR | 30.0% | |
| CCTTTCAAAGAATCAAAACA+TGG | - | chr3_4:53438203-53438222 | None:intergenic | 30.0% | |
| !!! | CCATGTTTTGATTCTTTGAA+AGG | + | chr3_4:53438200-53438219 | Msa0506790:intron | 30.0% |
| TGTTCTTCAATCTTCCCTTT+AGG | - | chr3_4:53435216-53435235 | None:intergenic | 35.0% | |
| !! | TTTAGAGTTGAGTTGGAATG+CGG | + | chr3_4:53435361-53435380 | Msa0506790:five_prime_UTR | 35.0% |
| !!! | TTCAAGTTTTGAAGGTCTTG+GGG | + | chr3_4:53435540-53435559 | Msa0506790:five_prime_UTR | 35.0% |
| !! | GTTTGCATTTTCAAGAAGGA+GGG | - | chr3_4:53435692-53435711 | Msa0506800:CDS | 35.0% |
| !! | AGTTTGCATTTTCAAGAAGG+AGG | - | chr3_4:53435693-53435712 | Msa0506800:CDS | 35.0% |
| !!! | TTTGAAGAGGCTTATTTTGC+GGG | - | chr3_4:53435736-53435755 | Msa0506800:CDS | 35.0% |
| AAATTCTTCAGAGAGTCTAG+TGG | + | chr3_4:53435762-53435781 | Msa0506790:five_prime_UTR | 35.0% | |
| TATATTGTGAAGCTAGTGCT+TGG | - | chr3_4:53435810-53435829 | Msa0506800:CDS | 35.0% | |
| !!! | TCAAGTTTTGGAATCCAATC+AGG | + | chr3_4:53435831-53435850 | Msa0506790:five_prime_UTR | 35.0% |
| CTGATACAAAATGCAAGTCA+AGG | + | chr3_4:53435904-53435923 | Msa0506790:five_prime_UTR | 35.0% | |
| TTAAGGAAGTTAGGCATAAG+AGG | - | chr3_4:53436026-53436045 | Msa0506800:CDS | 35.0% | |
| !!! | TATTTTTTGGAAGCAGGTTG+CGG | - | chr3_4:53436089-53436108 | Msa0506800:CDS | 35.0% |
| TATGTTGAACTTCACAACTG+GGG | - | chr3_4:53436162-53436181 | Msa0506800:CDS | 35.0% | |
| CTATGTTGAACTTCACAACT+GGG | - | chr3_4:53436163-53436182 | Msa0506800:CDS | 35.0% | |
| TCTATGTTGAACTTCACAAC+TGG | - | chr3_4:53436164-53436183 | Msa0506800:CDS | 35.0% | |
| TAAAGAAGCTCACAAAGCTA+AGG | - | chr3_4:53436226-53436245 | Msa0506800:CDS | 35.0% | |
| GTGAGCTTCTTTATCTCTAT+TGG | + | chr3_4:53436233-53436252 | Msa0506790:five_prime_UTR | 35.0% | |
| CCTACTGAACTTAGAAACAT+TGG | - | chr3_4:53436288-53436307 | Msa0506800:CDS | 35.0% | |
| ! | CCAATGTTTCTAAGTTCAGT+AGG | + | chr3_4:53436285-53436304 | Msa0506790:five_prime_UTR | 35.0% |
| AGAAGATTACCCAAGTTCTT+AGG | + | chr3_4:53436371-53436390 | Msa0506790:five_prime_UTR | 35.0% | |
| TTGAGAAACAACAGTAACTC+AGG | - | chr3_4:53436518-53436537 | Msa0506800:CDS | 35.0% | |
| !! | TTTCTAGTGTTGACTTCGAT+GGG | - | chr3_4:53436694-53436713 | Msa0506800:CDS | 35.0% |
| GTAAGAGACTTACTATGCAA+TGG | - | chr3_4:53436814-53436833 | Msa0506800:CDS | 35.0% | |
| AAACTATACTCAATCCTGAG+TGG | - | chr3_4:53436991-53437010 | Msa0506800:CDS | 35.0% | |
| ! | GACATTTTCTCAAGATGTTC+TGG | + | chr3_4:53437082-53437101 | Msa0506790:five_prime_UTR | 35.0% |
| ! | TGTAGCTTGTGAATATGAAC+AGG | + | chr3_4:53437166-53437185 | Msa0506790:five_prime_UTR | 35.0% |
| !! | GGAAAGAAGAATTTGCTGAT+GGG | - | chr3_4:53437285-53437304 | Msa0506800:CDS | 35.0% |
| ! | TACATTGACTACTCATGTGA+GGG | - | chr3_4:53437353-53437372 | Msa0506800:CDS | 35.0% |
| ! | TTACATTGACTACTCATGTG+AGG | - | chr3_4:53437354-53437373 | Msa0506800:CDS | 35.0% |
| AGTAAAAGCGACAATCAAAG+TGG | + | chr3_4:53437485-53437504 | Msa0506790:five_prime_UTR | 35.0% | |
| !! | GTATGTTTTTGATGAACAGG+AGG | - | chr3_4:53437518-53437537 | Msa0506800:CDS | 35.0% |
| GTCTAACCAAATCATCTCTT+TGG | + | chr3_4:53437617-53437636 | Msa0506790:five_prime_UTR | 35.0% | |
| GACATCAAATTATCAGTTGC+AGG | - | chr3_4:53437760-53437779 | Msa0506800:CDS | 35.0% | |
| CAACATGATAAAGTGACTTC+AGG | + | chr3_4:53437794-53437813 | Msa0506790:five_prime_UTR | 35.0% | |
| CCAATAAAGAAGTGAAAGCT+TGG | - | chr3_4:53437951-53437970 | Msa0506800:CDS | 35.0% | |
| CCAAGCTTTCACTTCTTTAT+TGG | + | chr3_4:53437948-53437967 | Msa0506790:CDS | 35.0% | |
| AAGATTGTTGACAGGGTTTA+GGG | - | chr3_4:53438070-53438089 | Msa0506800:CDS | 35.0% | |
| AAGAAGGAAGATTGTTGACA+GGG | - | chr3_4:53438077-53438096 | Msa0506800:CDS | 35.0% | |
| ATGAAATGGCAGAAAATCCA+GGG | - | chr3_4:53438137-53438156 | None:intergenic | 35.0% | |
| AATGAAATGGCAGAAAATCC+AGG | - | chr3_4:53438138-53438157 | None:intergenic | 35.0% | |
| AGATGCAAACGTTCACCTAA+AGG | + | chr3_4:53435198-53435217 | Msa0506790:five_prime_UTR | 40.0% | |
| GATGCAAACGTTCACCTAAA+GGG | + | chr3_4:53435199-53435218 | Msa0506790:five_prime_UTR | 40.0% | |
| ACTATGTTACGCTTCTCATG+CGG | - | chr3_4:53435290-53435309 | None:intergenic | 40.0% | |
| ! | GAGAAGCGTAACATAGTTAG+AGG | + | chr3_4:53435293-53435312 | Msa0506790:five_prime_UTR | 40.0% |
| !! | AGCATTGATCGAGAGAAAGA+CGG | - | chr3_4:53435471-53435490 | Msa0506800:CDS | 40.0% |
| CAGCAAATCCAAGGAATTGA+AGG | + | chr3_4:53435514-53435533 | Msa0506790:five_prime_UTR | 40.0% | |
| GTTTCTGATGCTAAAGGAGT+TGG | - | chr3_4:53435670-53435689 | Msa0506800:CDS | 40.0% | |
| GACTAACAAGGTTTCCTGAT+TGG | - | chr3_4:53435848-53435867 | Msa0506800:CDS | 40.0% | |
| !! | TTGAGTACTCTAAGATAGGG+TGG | + | chr3_4:53435879-53435898 | Msa0506790:five_prime_UTR | 40.0% |
| ACTGGGGCAAAAATGCAAAA+GGG | - | chr3_4:53436146-53436165 | Msa0506800:CDS | 40.0% | |
| AACTGGGGCAAAAATGCAAA+AGG | - | chr3_4:53436147-53436166 | Msa0506800:CDS | 40.0% | |
| AGTAGGTTACCAACAGATCT+AGG | + | chr3_4:53436302-53436321 | Msa0506790:five_prime_UTR | 40.0% | |
| !! | AGTTGCTATAGAAAAGCGTC+TGG | + | chr3_4:53436550-53436569 | Msa0506790:five_prime_UTR | 40.0% |
| GATCATGAACAAGTCACAGT+TGG | - | chr3_4:53436581-53436600 | Msa0506800:CDS | 40.0% | |
| !! | GTTTCTAGTGTTGACTTCGA+TGG | - | chr3_4:53436695-53436714 | Msa0506800:CDS | 40.0% |
| ACTATGCAATGGATAGCTGA+AGG | - | chr3_4:53436803-53436822 | Msa0506800:CDS | 40.0% | |
| AACAGATCCCATGCATTGTT+TGG | + | chr3_4:53437133-53437152 | Msa0506790:five_prime_UTR | 40.0% | |
| TTTGCCACCAAACAATGCAT+GGG | - | chr3_4:53437143-53437162 | Msa0506800:CDS | 40.0% | |
| !! | CGGAAAGAAGAATTTGCTGA+TGG | - | chr3_4:53437286-53437305 | Msa0506800:CDS | 40.0% |
| AGCTTCTCAATTCAACACTG+CGG | - | chr3_4:53437461-53437480 | Msa0506800:CDS | 40.0% | |
| !! | TGTTTTTGATGAACAGGAGG+TGG | - | chr3_4:53437515-53437534 | Msa0506800:CDS | 40.0% |
| TTGGTTTCTGTTGTTGGCAT+GGG | - | chr3_4:53437568-53437587 | Msa0506800:CDS | 40.0% | |
| !! | AGATGATTTGGTTAGACGCT+TGG | - | chr3_4:53437614-53437633 | Msa0506800:CDS | 40.0% |
| TGAGTCCCAAAGAGATGATT+TGG | - | chr3_4:53437626-53437645 | Msa0506800:CDS | 40.0% | |
| AATTTCAGGGTCACCAAATC+TGG | + | chr3_4:53437678-53437697 | Msa0506790:five_prime_UTR | 40.0% | |
| TGATAAAGTGACTTCAGGGT+TGG | + | chr3_4:53437799-53437818 | Msa0506790:five_prime_UTR | 40.0% | |
| GATAAAGTGACTTCAGGGTT+GGG | + | chr3_4:53437800-53437819 | Msa0506790:five_prime_UTR | 40.0% | |
| AGATTCTTCTCTGAGCTGTT+TGG | + | chr3_4:53437924-53437943 | Msa0506790:CDS | 40.0% | |
| AGATTGTTGACAGGGTTTAG+GGG | - | chr3_4:53438069-53438088 | Msa0506800:CDS | 40.0% | |
| GAAGATTGTTGACAGGGTTT+AGG | - | chr3_4:53438071-53438090 | Msa0506800:CDS | 40.0% | |
| GAAGAAGGAAGATTGTTGAC+AGG | - | chr3_4:53438078-53438097 | Msa0506800:CDS | 40.0% | |
| ! | TTACCATTTGTAGCGGAAGA+AGG | - | chr3_4:53438093-53438112 | Msa0506800:CDS | 40.0% |
| TTCTTCCGCTACAAATGGTA+AGG | + | chr3_4:53438092-53438111 | Msa0506790:CDS | 40.0% | |
| GCAATCCTTACCATTTGTAG+CGG | - | chr3_4:53438100-53438119 | Msa0506800:CDS | 40.0% | |
| ATTGATCGAGAGAAAGACGG+AGG | - | chr3_4:53435468-53435487 | Msa0506800:CDS | 45.0% | |
| CTGGCATATCAGCAAATCCA+AGG | + | chr3_4:53435505-53435524 | Msa0506790:five_prime_UTR | 45.0% | |
| TGGGGTAACACCTTCAATTC+AGG | + | chr3_4:53435558-53435577 | Msa0506790:five_prime_UTR | 45.0% | |
| AGGAGGGTTTCTGATGCTAA+AGG | - | chr3_4:53435676-53435695 | Msa0506800:CDS | 45.0% | |
| ! | GGATCTAAGGCAAACTCAAG+TGG | - | chr3_4:53436267-53436286 | Msa0506800:CDS | 45.0% |
| ACGGTTCTTCCTAGATCTGT+TGG | - | chr3_4:53436314-53436333 | Msa0506800:CDS | 45.0% | |
| CGTTGAGGGAAAAACTTTGG+AGG | - | chr3_4:53436768-53436787 | Msa0506800:CDS | 45.0% | |
| GTGCGTTGAGGGAAAAACTT+TGG | - | chr3_4:53436771-53436790 | Msa0506800:CDS | 45.0% | |
| !! | GGATTTGTTACGTGCGTTGA+GGG | - | chr3_4:53436782-53436801 | Msa0506800:CDS | 45.0% |
| !! | AGGATTTGTTACGTGCGTTG+AGG | - | chr3_4:53436783-53436802 | Msa0506800:CDS | 45.0% |
| !! | CAATTGATGGTGTTGTGCTC+CGG | + | chr3_4:53436833-53436852 | Msa0506790:five_prime_UTR | 45.0% |
| ACTCAATCCTGAGTGGAGAA+AGG | - | chr3_4:53436984-53437003 | Msa0506800:CDS | 45.0% | |
| CCACTTGCAATTGTGGTCAT+TGG | - | chr3_4:53437031-53437050 | Msa0506800:CDS | 45.0% | |
| CCAATGACCACAATTGCAAG+TGG | + | chr3_4:53437028-53437047 | Msa0506790:five_prime_UTR | 45.0% | |
| AGATCCCATGCATTGTTTGG+TGG | + | chr3_4:53437136-53437155 | Msa0506790:five_prime_UTR | 45.0% | |
| CTTTGCCACCAAACAATGCA+TGG | - | chr3_4:53437144-53437163 | Msa0506800:CDS | 45.0% | |
| ! | CATGCATTGTTTGGTGGCAA+AGG | + | chr3_4:53437142-53437161 | Msa0506790:five_prime_UTR | 45.0% |
| TGCTGCATGCATCATTCTAG+TGG | + | chr3_4:53437210-53437229 | Msa0506790:five_prime_UTR | 45.0% | |
| GGGAACACCTTGAATCAAAG+AGG | - | chr3_4:53437333-53437352 | Msa0506800:CDS | 45.0% | |
| ! | GTTGGTTTCTGTTGTTGGCA+TGG | - | chr3_4:53437569-53437588 | Msa0506800:CDS | 45.0% |
| !! | CGCATGTTGGTTTCTGTTGT+TGG | - | chr3_4:53437574-53437593 | Msa0506800:CDS | 45.0% |
| ! | ATTTGGTTAGACGCTTGGTG+GGG | - | chr3_4:53437609-53437628 | Msa0506800:CDS | 45.0% |
| ! | GATTTGGTTAGACGCTTGGT+GGG | - | chr3_4:53437610-53437629 | Msa0506800:CDS | 45.0% |
| !! | TGATTTGGTTAGACGCTTGG+TGG | - | chr3_4:53437611-53437630 | Msa0506800:CDS | 45.0% |
| GCACAAAAAGTCAACCACTC+TGG | - | chr3_4:53437862-53437881 | Msa0506800:CDS | 45.0% | |
| CTTCCTTCTTCCGCTACAAA+TGG | + | chr3_4:53438087-53438106 | Msa0506790:CDS | 45.0% | |
| TGCTGCAAAAGTAATGACCC+TGG | + | chr3_4:53438117-53438136 | Msa0506790:CDS | 45.0% | |
| AGAAAGACGGAGGATGCCAT+TGG | - | chr3_4:53435458-53435477 | Msa0506800:CDS | 50.0% | |
| TTGCGGGATGATGCATTTGC+TGG | - | chr3_4:53435720-53435739 | Msa0506800:CDS | 50.0% | |
| ! | AGTTAGGCATAAGAGGCGTG+CGG | - | chr3_4:53436019-53436038 | Msa0506800:CDS | 50.0% |
| !! | TTTTTGGAAGCAGGTTGCGG+TGG | - | chr3_4:53436086-53436105 | Msa0506800:CDS | 50.0% |
| AGGGCTACCACTTGCAATTG+TGG | - | chr3_4:53437038-53437057 | Msa0506800:CDS | 50.0% | |
| AGCAATGAGCCTATCCCAGA+GGG | - | chr3_4:53437397-53437416 | Msa0506800:CDS | 50.0% | |
| TAGCAATGAGCCTATCCCAG+AGG | - | chr3_4:53437398-53437417 | Msa0506800:CDS | 50.0% | |
| GTTTCTGTTGTTGGCATGGG+AGG | - | chr3_4:53437565-53437584 | Msa0506800:CDS | 50.0% | |
| AGAAACCAACATGCGCTCAC+TGG | + | chr3_4:53437579-53437598 | Msa0506790:five_prime_UTR | 50.0% | |
| ! | TTTGGTTAGACGCTTGGTGG+GGG | - | chr3_4:53437608-53437627 | Msa0506800:CDS | 50.0% |
| GTCACCAAATCTGGCTGCTT+TGG | + | chr3_4:53437687-53437706 | Msa0506790:five_prime_UTR | 50.0% | |
| GTAAGCCTATGAGTCCAGAG+TGG | + | chr3_4:53437845-53437864 | Msa0506790:five_prime_UTR | 50.0% | |
| GTCAACCACTCTGGACTCAT+AGG | - | chr3_4:53437853-53437872 | Msa0506800:CDS | 50.0% | |
| ACAAAGGCTGCTGAAGAAGG+AGG | - | chr3_4:53437979-53437998 | Msa0506800:CDS | 50.0% | |
| GACACAAAGGCTGCTGAAGA+AGG | - | chr3_4:53437982-53438001 | Msa0506800:CDS | 50.0% | |
| GCTCAAGGATGCTGACACAA+AGG | - | chr3_4:53437995-53438014 | Msa0506800:CDS | 50.0% | |
| TGTGTCAGCATCCTTGAGCA+AGG | + | chr3_4:53437996-53438015 | Msa0506790:CDS | 50.0% | |
| ! | TTAGGCATAAGAGGCGTGCG+GGG | - | chr3_4:53436017-53436036 | Msa0506800:CDS | 55.0% |
| ! | GTTAGGCATAAGAGGCGTGC+GGG | - | chr3_4:53436018-53436037 | Msa0506800:CDS | 55.0% |
| TGACTCGCCTTTCTCCACTC+AGG | + | chr3_4:53436974-53436993 | Msa0506790:five_prime_UTR | 55.0% | |
| TGCATCTTCTCCAGACCCTC+TGG | + | chr3_4:53437379-53437398 | Msa0506790:five_prime_UTR | 55.0% | |
| GCATCTTCTCCAGACCCTCT+GGG | + | chr3_4:53437380-53437399 | Msa0506790:five_prime_UTR | 55.0% | |
| !! | TTCTCCAGACCCTCTGGGAT+AGG | + | chr3_4:53437385-53437404 | Msa0506790:five_prime_UTR | 55.0% |
| GTTGTTGGCATGGGAGGACT+CGG | - | chr3_4:53437559-53437578 | Msa0506800:CDS | 55.0% | |
| ! | TTGGTTAGACGCTTGGTGGG+GGG | - | chr3_4:53437607-53437626 | Msa0506800:CDS | 55.0% |
| GGGACCAAAGCAGCCAGATT+TGG | - | chr3_4:53437694-53437713 | Msa0506800:CDS | 55.0% | |
| AAGGCTGCTGAAGAAGGAGG+AGG | - | chr3_4:53437976-53437995 | Msa0506800:CDS | 55.0% | |
| CAGCATCCTTGAGCAAGGCT+TGG | + | chr3_4:53438001-53438020 | Msa0506790:CDS | 55.0% | |
| GAGCATCCAAGCCTTGCTCA+AGG | - | chr3_4:53438010-53438029 | Msa0506800:CDS | 55.0% | |
| ! | AGAGGCGTGCGGGGAACATA+TGG | - | chr3_4:53436008-53436027 | Msa0506800:CDS | 60.0% |
| TGAGCCTATCCCAGAGGGTC+TGG | - | chr3_4:53437392-53437411 | Msa0506800:CDS | 60.0% | |
| GGGAACCAGTGAGCGCATGT+TGG | - | chr3_4:53437587-53437606 | Msa0506800:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 53435168 | 53438292 | 53435168 | ID=Msa0506790;Name=Msa0506790 |
| chr3_4 | mRNA | 53435168 | 53438292 | 53435168 | ID=Msa0506790-mRNA-1;Parent=Msa0506790;Name=Msa0506790-mRNA-1;_AED=0.26;_eAED=0.26;_QI=2748|0|0.5|1|0|0.5|2|48|100 |
| chr3_4 | exon | 53435168 | 53438218 | 53435168 | ID=Msa0506790-mRNA-1:exon:11852;Parent=Msa0506790-mRNA-1 |
| chr3_4 | exon | 53438245 | 53438292 | 53438245 | ID=Msa0506790-mRNA-1:exon:11853;Parent=Msa0506790-mRNA-1 |
| chr3_4 | five_prime_UTR | 53435168 | 53437915 | 53435168 | ID=Msa0506790-mRNA-1:five_prime_utr;Parent=Msa0506790-mRNA-1 |
| chr3_4 | CDS | 53437916 | 53438218 | 53437916 | ID=Msa0506790-mRNA-1:cds;Parent=Msa0506790-mRNA-1 |
| chr3_4 | three_prime_UTR | 53438245 | 53438292 | 53438245 | ID=Msa0506790-mRNA-1:three_prime_utr;Parent=Msa0506790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
