AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462660 MtrunA17_Chr3g0098731 94.483 145 7 1 1 145 1 144 8.61e-96 284
Msa1462660 MtrunA17_Chr2g0329801 37.634 93 53 1 26 113 15 107 1.02e-14 70.1
Msa1462660 MtrunA17_Chr8g0343481 42.045 88 46 2 26 108 59 146 2.09e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462660 AT4G26990.1 51.282 117 54 2 28 141 23 139 3.93e-30 113
Msa1462660 AT5G54920.1 55.670 97 42 1 24 120 23 118 6.35e-28 107
Msa1462660 AT5G54920.2 55.670 97 42 1 24 120 23 118 7.03e-28 107
Msa1462660 AT3G14010.2 32.540 126 79 3 22 141 42 167 1.50e-13 67.0
Msa1462660 AT3G14010.3 32.540 126 79 3 22 141 42 167 1.50e-13 67.0
Msa1462660 AT3G14010.1 32.540 126 79 3 22 141 42 167 1.50e-13 67.0
Msa1462660 AT3G14010.5 32.540 126 79 3 22 141 50 175 1.69e-13 67.0
Msa1462660 AT3G14010.4 31.405 121 78 2 26 141 47 167 3.37e-13 65.9
Msa1462660 AT1G54170.1 41.463 82 47 1 28 108 52 133 6.66e-12 62.4

Find 31 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGTGGCCCTTTCCCTTCT+TGG 0.139919 tig0042499:-2957 Msa1462660:intergenic
TCTTATATTATTCTTGATCT+TGG 0.253967 tig0042499:-1626 Msa1462660:intergenic
AAAGATGGTTCTGTATATTC+TGG 0.315916 tig0042499:+1853 Msa1462660:CDS
CTTTCCCTTCTTGGTCATCC+TGG 0.330841 tig0042499:-2948 Msa1462660:intergenic
CTTATATTATTCTTGATCTT+GGG 0.338701 tig0042499:-1625 Msa1462660:intergenic
GCTTCTACTGAATCAAATTT+CGG 0.340165 tig0042499:+1889 Msa1462660:CDS
GCAATCACTATGAGTATCAT+TGG 0.355991 tig0042499:+1808 Msa1462660:CDS
TAGTGTGATCCTCTTTCAAC+AGG 0.417155 tig0042499:-1741 Msa1462660:intergenic
TAATGTTGGAAACGAGGCTT+TGG 0.424920 tig0042499:+2979 Msa1462660:CDS
TCATTCGATGGATGCAGAAC+AGG 0.436007 tig0042499:+3249 Msa1462660:CDS
TCTTTAACATGAACATCAAC+AGG 0.455843 tig0042499:-1835 Msa1462660:intergenic
GGTGTTGGTGGAAATATAAC+TGG 0.474384 tig0042499:+3181 Msa1462660:CDS
CAGAACAGGTTAATCAATCA+AGG 0.496832 tig0042499:+3263 Msa1462660:CDS
GTTGATGTTCATGTTAAAGA+TGG 0.497939 tig0042499:+1838 Msa1462660:CDS
TTCTGCTGATAGTCATTCGA+TGG 0.515820 tig0042499:+3237 Msa1462660:CDS
AGGATGACCAAGAAGGGAAA+GGG 0.530876 tig0042499:+2950 Msa1462660:CDS
GGAAAGGGCCACAGTAATGT+TGG 0.532813 tig0042499:+2965 Msa1462660:CDS
CAAGCCAGGATGACCAAGAA+GGG 0.541510 tig0042499:+2944 Msa1462660:CDS
TCTCGTGCAAGTTGTTGCTA+AGG 0.543098 tig0042499:+3030 Msa1462660:CDS
AAATATAACTGGTGATTATG+AGG 0.545568 tig0042499:+3192 Msa1462660:CDS
CTTCCTGCGGATGGTGTTGG+TGG 0.547917 tig0042499:+3169 Msa1462660:CDS
GGAGTAACGCTTCCTGCGGA+TGG 0.559418 tig0042499:+3160 Msa1462660:CDS
ACGCTTCCTGCGGATGGTGT+TGG 0.563729 tig0042499:+3166 Msa1462660:CDS
GCAAGCCAGGATGACCAAGA+AGG 0.563977 tig0042499:+2943 Msa1462660:CDS
CAGGATGACCAAGAAGGGAA+AGG 0.575238 tig0042499:+2949 Msa1462660:CDS
GGCTTTGGTAGATACACTAG+TGG 0.635944 tig0042499:+2994 Msa1462660:CDS
TTTCCACCAACACCATCCGC+AGG 0.642982 tig0042499:-3172 Msa1462660:intergenic
CCACAGTAATGTTGGAAACG+AGG 0.647305 tig0042499:+2973 Msa1462660:CDS
GTAGGGAGTAACGCTTCCTG+CGG 0.668676 tig0042499:+3156 Msa1462660:intron
CCTCGTTTCCAACATTACTG+TGG 0.694545 tig0042499:-2973 Msa1462660:intergenic
TGAGGAAGCAGTTACACACG+AGG 0.710029 tig0042499:+3210 Msa1462660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATATTTTTACTGAATT+AGG - tig0042499:2630-2649 Msa1462660:intergenic 10.0%
!!! ATTTATATTTTTACTGAATT+AGG - tig0042499:2630-2649 Msa1462660:intergenic 10.0%
!! AAGAAATGAATGAAAAAAAA+AGG - tig0042499:1919-1938 Msa1462660:intergenic 15.0%
!!! TTCTTAACCTTTTTTTTTTT+AGG + tig0042499:1934-1953 Msa1462660:intron 15.0%
!! CAAATTTCCTAAAAAAAAAA+AGG - tig0042499:1944-1963 Msa1462660:intergenic 15.0%
!!! GTGAAAAAATTTCATTTTTT+TGG + tig0042499:2005-2024 Msa1462660:intron 15.0%
!!! AAATTTTCCATTTTTCTTAT+CGG + tig0042499:2690-2709 Msa1462660:intron 15.0%
!!! TAACCTTTTTAATTTTTGTT+TGG + tig0042499:2833-2852 Msa1462660:intron 15.0%
!! ATACCAAACAAAAATTAAAA+AGG - tig0042499:2839-2858 Msa1462660:intergenic 15.0%
!! AAGAAATGAATGAAAAAAAA+AGG - tig0042499:1919-1938 Msa1462660:intergenic 15.0%
!!! TTCTTAACCTTTTTTTTTTT+AGG + tig0042499:1934-1953 Msa1462660:intron 15.0%
!! CAAATTTCCTAAAAAAAAAA+AGG - tig0042499:1944-1963 Msa1462660:intergenic 15.0%
!!! GTGAAAAAATTTCATTTTTT+TGG + tig0042499:2005-2024 Msa1462660:intron 15.0%
!!! AAATTTTCCATTTTTCTTAT+CGG + tig0042499:2690-2709 Msa1462660:intron 15.0%
!!! TAACCTTTTTAATTTTTGTT+TGG + tig0042499:2833-2852 Msa1462660:intron 15.0%
!! ATACCAAACAAAAATTAAAA+AGG - tig0042499:2839-2858 Msa1462660:intergenic 15.0%
!! CTTATATTATTCTTGATCTT+GGG - tig0042499:1628-1647 Msa1206520:intergenic 20.0%
!! TCTTATATTATTCTTGATCT+TGG - tig0042499:1629-1648 Msa1206520:intergenic 20.0%
!! TAAAAACTATCAACTCTATT+AGG - tig0042499:2126-2145 Msa1462660:intergenic 20.0%
!!! TAATAGAGTTGATAGTTTTT+AGG + tig0042499:2125-2144 Msa1462660:intron 20.0%
!! TTGTTATCTATGAAAATCTT+AGG + tig0042499:2169-2188 Msa1462660:intron 20.0%
!! TGTTATCTATGAAAATCTTA+GGG + tig0042499:2170-2189 Msa1462660:intron 20.0%
!! ATTAATCAAGTAAATGGAAA+TGG - tig0042499:2376-2395 Msa1462660:intergenic 20.0%
!!! ATGGAAAATTTTAAAAACGA+AGG - tig0042499:2681-2700 Msa1462660:intergenic 20.0%
!! ATTAAAAAGGTTAACAATCT+AGG - tig0042499:2826-2845 Msa1462660:intergenic 20.0%
!! AGAATATAACTATGTTCTTA+AGG + tig0042499:3110-3129 Msa1462660:intron 20.0%
!! CTTATATTATTCTTGATCTT+GGG - tig0042499:1628-1647 Msa1462660:intergenic 20.0%
!! TCTTATATTATTCTTGATCT+TGG - tig0042499:1629-1648 Msa1462660:intergenic 20.0%
!! TAAAAACTATCAACTCTATT+AGG - tig0042499:2126-2145 Msa1462660:intergenic 20.0%
!!! TAATAGAGTTGATAGTTTTT+AGG + tig0042499:2125-2144 Msa1462660:intron 20.0%
!! TTGTTATCTATGAAAATCTT+AGG + tig0042499:2169-2188 Msa1462660:intron 20.0%
!! TGTTATCTATGAAAATCTTA+GGG + tig0042499:2170-2189 Msa1462660:intron 20.0%
!! ATTAATCAAGTAAATGGAAA+TGG - tig0042499:2376-2395 Msa1462660:intergenic 20.0%
!!! ATGGAAAATTTTAAAAACGA+AGG - tig0042499:2681-2700 Msa1462660:intergenic 20.0%
!! ATTAAAAAGGTTAACAATCT+AGG - tig0042499:2826-2845 Msa1462660:intergenic 20.0%
!! AGAATATAACTATGTTCTTA+AGG + tig0042499:3110-3129 Msa1462660:intron 20.0%
!!! TTCAATCATCAATTTTGAGA+TGG + tig0042499:1702-1721 Msa1462660:exon 25.0%
!!! TCAATCATCAATTTTGAGAT+GGG + tig0042499:1703-1722 Msa1462660:exon 25.0%
! TATTTACTCAATAGCTCAAT+TGG + tig0042499:1979-1998 Msa1462660:intron 25.0%
! ATTTACTCAATAGCTCAATT+GGG + tig0042499:1980-1999 Msa1462660:intron 25.0%
!! AATTGTGTGTAATTTTCATC+TGG + tig0042499:2062-2081 Msa1462660:intron 25.0%
!! ATTGTGTGTAATTTTCATCT+GGG + tig0042499:2063-2082 Msa1462660:intron 25.0%
!!! AAGTACATATTCTGAAGTAT+CGG - tig0042499:2268-2287 Msa1462660:intergenic 25.0%
!! TTTTTACTGTATTAACTACC+AGG - tig0042499:2400-2419 Msa1462660:intergenic 25.0%
!!! CTTGATTTTGATGAAAATAG+TGG + tig0042499:2482-2501 Msa1462660:intron 25.0%
!!! ATATTTTTACTGAATTAGGC+TGG - tig0042499:2626-2645 Msa1462660:intergenic 25.0%
! ATGAGAATAGCATTAGTAAT+AGG + tig0042499:2791-2810 Msa1462660:intron 25.0%
! TAACTATGTTCTTAAGGTTA+AGG + tig0042499:3116-3135 Msa1462660:intron 25.0%
! AAATATAACTGGTGATTATG+AGG + tig0042499:3192-3211 Msa1462660:CDS 25.0%
!!! TTCAATCATCAATTTTGAGA+TGG + tig0042499:1702-1721 Msa1462660:exon 25.0%
!!! TCAATCATCAATTTTGAGAT+GGG + tig0042499:1703-1722 Msa1462660:exon 25.0%
! TATTTACTCAATAGCTCAAT+TGG + tig0042499:1979-1998 Msa1462660:intron 25.0%
! ATTTACTCAATAGCTCAATT+GGG + tig0042499:1980-1999 Msa1462660:intron 25.0%
!! AATTGTGTGTAATTTTCATC+TGG + tig0042499:2062-2081 Msa1462660:intron 25.0%
!! ATTGTGTGTAATTTTCATCT+GGG + tig0042499:2063-2082 Msa1462660:intron 25.0%
!!! AAGTACATATTCTGAAGTAT+CGG - tig0042499:2268-2287 Msa1462660:intergenic 25.0%
!! TTTTTACTGTATTAACTACC+AGG - tig0042499:2400-2419 Msa1462660:intergenic 25.0%
!!! CTTGATTTTGATGAAAATAG+TGG + tig0042499:2482-2501 Msa1462660:intron 25.0%
!!! ATATTTTTACTGAATTAGGC+TGG - tig0042499:2626-2645 Msa1462660:intergenic 25.0%
! ATGAGAATAGCATTAGTAAT+AGG + tig0042499:2791-2810 Msa1462660:intron 25.0%
! TAACTATGTTCTTAAGGTTA+AGG + tig0042499:3116-3135 Msa1462660:intron 25.0%
! AAATATAACTGGTGATTATG+AGG + tig0042499:3192-3211 Msa1462660:CDS 25.0%
AAAAACGAGAATGGTTATGA+TGG - tig0042499:1658-1677 Msa1206520:intergenic 30.0%
AAAAAAGAACCTGTTGAAAG+AGG + tig0042499:1732-1751 Msa1462660:CDS 30.0%
TCTTTAACATGAACATCAAC+AGG - tig0042499:1838-1857 Msa1462660:intergenic 30.0%
GTTGATGTTCATGTTAAAGA+TGG + tig0042499:1838-1857 Msa1462660:CDS 30.0%
! AAAGATGGTTCTGTATATTC+TGG + tig0042499:1853-1872 Msa1462660:CDS 30.0%
GCTTCTACTGAATCAAATTT+CGG + tig0042499:1889-1908 Msa1462660:CDS 30.0%
! TTGTGTGTAATTTTCATCTG+GGG + tig0042499:2064-2083 Msa1462660:intron 30.0%
!! ATGTACTTGTCTCTGAAATA+TGG + tig0042499:2280-2299 Msa1462660:intron 30.0%
!! TGTACTTGTCTCTGAAATAT+GGG + tig0042499:2281-2300 Msa1462660:intron 30.0%
AAATATGGGTACTCCTAAAA+TGG + tig0042499:2295-2314 Msa1462660:intron 30.0%
TCAAGTAAATGGAAATGGTT+CGG - tig0042499:2371-2390 Msa1462660:intergenic 30.0%
CCAGGAATTAATCAAGTAAA+TGG - tig0042499:2382-2401 Msa1462660:intergenic 30.0%
CCATTTACTTGATTAATTCC+TGG + tig0042499:2379-2398 Msa1462660:intron 30.0%
!! GATTTTGATGAAAATAGTGG+AGG + tig0042499:2485-2504 Msa1462660:intron 30.0%
!! AAATCTCTGAAGCATGATAA+TGG + tig0042499:2526-2545 Msa1462660:intron 30.0%
TGTATAACAGATTCAAGTGT+GGG - tig0042499:2867-2886 Msa1462660:intergenic 30.0%
TTGTATAACAGATTCAAGTG+TGG - tig0042499:2868-2887 Msa1462660:intergenic 30.0%
CTAAACATGCAACAAAGTAA+GGG - tig0042499:2910-2929 Msa1462660:intergenic 30.0%
CTTACTTTGTTGCATGTTTA+GGG + tig0042499:2909-2928 Msa1462660:intron 30.0%
! TACATGTGATTTTGTGTGTA+GGG + tig0042499:3139-3158 Msa1462660:intron 30.0%
AAAAACGAGAATGGTTATGA+TGG - tig0042499:1658-1677 Msa1462660:intergenic 30.0%
AAAAAAGAACCTGTTGAAAG+AGG + tig0042499:1732-1751 Msa1462660:CDS 30.0%
TCTTTAACATGAACATCAAC+AGG - tig0042499:1838-1857 Msa1462660:intergenic 30.0%
GTTGATGTTCATGTTAAAGA+TGG + tig0042499:1838-1857 Msa1462660:CDS 30.0%
! AAAGATGGTTCTGTATATTC+TGG + tig0042499:1853-1872 Msa1462660:CDS 30.0%
GCTTCTACTGAATCAAATTT+CGG + tig0042499:1889-1908 Msa1462660:CDS 30.0%
! TTGTGTGTAATTTTCATCTG+GGG + tig0042499:2064-2083 Msa1462660:intron 30.0%
!! ATGTACTTGTCTCTGAAATA+TGG + tig0042499:2280-2299 Msa1462660:intron 30.0%
!! TGTACTTGTCTCTGAAATAT+GGG + tig0042499:2281-2300 Msa1462660:intron 30.0%
AAATATGGGTACTCCTAAAA+TGG + tig0042499:2295-2314 Msa1462660:intron 30.0%
TCAAGTAAATGGAAATGGTT+CGG - tig0042499:2371-2390 Msa1462660:intergenic 30.0%
CCAGGAATTAATCAAGTAAA+TGG - tig0042499:2382-2401 Msa1462660:intergenic 30.0%
CCATTTACTTGATTAATTCC+TGG + tig0042499:2379-2398 Msa1462660:intron 30.0%
!! GATTTTGATGAAAATAGTGG+AGG + tig0042499:2485-2504 Msa1462660:intron 30.0%
!! AAATCTCTGAAGCATGATAA+TGG + tig0042499:2526-2545 Msa1462660:intron 30.0%
TGTATAACAGATTCAAGTGT+GGG - tig0042499:2867-2886 Msa1462660:intergenic 30.0%
TTGTATAACAGATTCAAGTG+TGG - tig0042499:2868-2887 Msa1462660:intergenic 30.0%
CTAAACATGCAACAAAGTAA+GGG - tig0042499:2910-2929 Msa1462660:intergenic 30.0%
CTTACTTTGTTGCATGTTTA+GGG + tig0042499:2909-2928 Msa1462660:intron 30.0%
! TACATGTGATTTTGTGTGTA+GGG + tig0042499:3139-3158 Msa1462660:intron 30.0%
GAAAGATGCAAAAACGAGAA+TGG - tig0042499:1667-1686 Msa1206520:intergenic 35.0%
GCAATCACTATGAGTATCAT+TGG + tig0042499:1808-1827 Msa1462660:CDS 35.0%
! TTTGATGAAAATAGTGGAGG+CGG + tig0042499:2488-2507 Msa1462660:intron 35.0%
! TGGAAGTGTGGTTAAATACA+TGG + tig0042499:2546-2565 Msa1462660:intron 35.0%
AACAAGTTCCTATGATGCAT+AGG - tig0042499:2742-2761 Msa1462660:intergenic 35.0%
CCTAAACATGCAACAAAGTA+AGG - tig0042499:2911-2930 Msa1462660:intergenic 35.0%
CCTTACTTTGTTGCATGTTT+AGG + tig0042499:2908-2927 Msa1462660:intron 35.0%
! GTACATGTGATTTTGTGTGT+AGG + tig0042499:3138-3157 Msa1462660:intron 35.0%
GAAAGATGCAAAAACGAGAA+TGG - tig0042499:1667-1686 Msa1462660:intergenic 35.0%
GCAATCACTATGAGTATCAT+TGG + tig0042499:1808-1827 Msa1462660:CDS 35.0%
! TTTGATGAAAATAGTGGAGG+CGG + tig0042499:2488-2507 Msa1462660:intron 35.0%
! TGGAAGTGTGGTTAAATACA+TGG + tig0042499:2546-2565 Msa1462660:intron 35.0%
AACAAGTTCCTATGATGCAT+AGG - tig0042499:2742-2761 Msa1462660:intergenic 35.0%
CCTAAACATGCAACAAAGTA+AGG - tig0042499:2911-2930 Msa1462660:intergenic 35.0%
CCTTACTTTGTTGCATGTTT+AGG + tig0042499:2908-2927 Msa1462660:intron 35.0%
! GTACATGTGATTTTGTGTGT+AGG + tig0042499:3138-3157 Msa1462660:intron 35.0%
TAGTGTGATCCTCTTTCAAC+AGG - tig0042499:1744-1763 Msa1462660:intergenic 40.0%
! TGTGTAATTTTCATCTGGGG+TGG + tig0042499:2067-2086 Msa1462660:intron 40.0%
! TACGGGTGTTTCACCATTTT+AGG - tig0042499:2311-2330 Msa1462660:intergenic 40.0%
GTACTGTATGTATGCATACC+CGG - tig0042499:2334-2353 Msa1462660:intergenic 40.0%
!! GAAGCATGATAATGGAAGTG+TGG + tig0042499:2534-2553 Msa1462660:intron 40.0%
!! ACGGGTACCGATAAGAAAAA+TGG - tig0042499:2700-2719 Msa1462660:intergenic 40.0%
TTCCTATGATGCATAGGTAC+GGG - tig0042499:2736-2755 Msa1462660:intergenic 40.0%
GTTCCTATGATGCATAGGTA+CGG - tig0042499:2737-2756 Msa1462660:intergenic 40.0%
CAGAAGTTTCTTTGACTGCT+GGG + tig0042499:2767-2786 Msa1462660:intron 40.0%
GCATTAGTAATAGGCAAAGC+AGG + tig0042499:2800-2819 Msa1462660:intron 40.0%
TAATGTTGGAAACGAGGCTT+TGG + tig0042499:2979-2998 Msa1462660:CDS 40.0%
GCATGACACAAGATTACGAA+TGG - tig0042499:3060-3079 Msa1462660:intergenic 40.0%
!! GGTGTTGGTGGAAATATAAC+TGG + tig0042499:3181-3200 Msa1462660:CDS 40.0%
TTCTGCTGATAGTCATTCGA+TGG + tig0042499:3237-3256 Msa1462660:CDS 40.0%
GCAGAACAGGTTAATCAATC+AGG + tig0042499:3262-3281 Msa1462660:CDS 40.0%
TAGTGTGATCCTCTTTCAAC+AGG - tig0042499:1744-1763 Msa1462660:intergenic 40.0%
! TGTGTAATTTTCATCTGGGG+TGG + tig0042499:2067-2086 Msa1462660:intron 40.0%
! TACGGGTGTTTCACCATTTT+AGG - tig0042499:2311-2330 Msa1462660:intergenic 40.0%
GTACTGTATGTATGCATACC+CGG - tig0042499:2334-2353 Msa1462660:intergenic 40.0%
!! GAAGCATGATAATGGAAGTG+TGG + tig0042499:2534-2553 Msa1462660:intron 40.0%
!! ACGGGTACCGATAAGAAAAA+TGG - tig0042499:2700-2719 Msa1462660:intergenic 40.0%
TTCCTATGATGCATAGGTAC+GGG - tig0042499:2736-2755 Msa1462660:intergenic 40.0%
GTTCCTATGATGCATAGGTA+CGG - tig0042499:2737-2756 Msa1462660:intergenic 40.0%
CAGAAGTTTCTTTGACTGCT+GGG + tig0042499:2767-2786 Msa1462660:intron 40.0%
GCATTAGTAATAGGCAAAGC+AGG + tig0042499:2800-2819 Msa1462660:intron 40.0%
TAATGTTGGAAACGAGGCTT+TGG + tig0042499:2979-2998 Msa1462660:CDS 40.0%
GCATGACACAAGATTACGAA+TGG - tig0042499:3060-3079 Msa1462660:intergenic 40.0%
!! GGTGTTGGTGGAAATATAAC+TGG + tig0042499:3181-3200 Msa1462660:CDS 40.0%
TTCTGCTGATAGTCATTCGA+TGG + tig0042499:3237-3256 Msa1462660:CDS 40.0%
AAATGGTGAAACACCCGTAC+CGG + tig0042499:2312-2331 Msa1462660:intron 45.0%
TATGTATGCATACCCGGTAC+GGG - tig0042499:2328-2347 Msa1462660:intergenic 45.0%
GTATGTATGCATACCCGGTA+CGG - tig0042499:2329-2348 Msa1462660:intergenic 45.0%
ATGATGCATAGGTACGGGTT+CGG - tig0042499:2731-2750 Msa1462660:intergenic 45.0%
AACCCGTACCTATGCATCAT+AGG + tig0042499:2731-2750 Msa1462660:intron 45.0%
GCAGTCAAAGAAACTTCTGG+TGG - tig0042499:2766-2785 Msa1462660:intergenic 45.0%
CCAGCAGTCAAAGAAACTTC+TGG - tig0042499:2769-2788 Msa1462660:intergenic 45.0%
CCAGAAGTTTCTTTGACTGC+TGG + tig0042499:2766-2785 Msa1462660:intron 45.0%
!!! GGATTGTTTTGAAGCAAGCC+AGG + tig0042499:2930-2949 Msa1462660:CDS 45.0%
AGGATGACCAAGAAGGGAAA+GGG + tig0042499:2950-2969 Msa1462660:CDS 45.0%
CCTCGTTTCCAACATTACTG+TGG - tig0042499:2976-2995 Msa1462660:intergenic 45.0%
CCACAGTAATGTTGGAAACG+AGG + tig0042499:2973-2992 Msa1462660:CDS 45.0%
! GGCTTTGGTAGATACACTAG+TGG + tig0042499:2994-3013 Msa1462660:CDS 45.0%
TCTCGTGCAAGTTGTTGCTA+AGG + tig0042499:3030-3049 Msa1462660:CDS 45.0%
TCATTCGATGGATGCAGAAC+AGG + tig0042499:3249-3268 Msa1462660:CDS 45.0%
AAATGGTGAAACACCCGTAC+CGG + tig0042499:2312-2331 Msa1462660:intron 45.0%
TATGTATGCATACCCGGTAC+GGG - tig0042499:2328-2347 Msa1462660:intergenic 45.0%
GTATGTATGCATACCCGGTA+CGG - tig0042499:2329-2348 Msa1462660:intergenic 45.0%
ATGATGCATAGGTACGGGTT+CGG - tig0042499:2731-2750 Msa1462660:intergenic 45.0%
AACCCGTACCTATGCATCAT+AGG + tig0042499:2731-2750 Msa1462660:intron 45.0%
GCAGTCAAAGAAACTTCTGG+TGG - tig0042499:2766-2785 Msa1462660:intergenic 45.0%
CCAGCAGTCAAAGAAACTTC+TGG - tig0042499:2769-2788 Msa1462660:intergenic 45.0%
CCAGAAGTTTCTTTGACTGC+TGG + tig0042499:2766-2785 Msa1462660:intron 45.0%
!!! GGATTGTTTTGAAGCAAGCC+AGG + tig0042499:2930-2949 Msa1462660:CDS 45.0%
AGGATGACCAAGAAGGGAAA+GGG + tig0042499:2950-2969 Msa1462660:CDS 45.0%
CCTCGTTTCCAACATTACTG+TGG - tig0042499:2976-2995 Msa1462660:intergenic 45.0%
CCACAGTAATGTTGGAAACG+AGG + tig0042499:2973-2992 Msa1462660:CDS 45.0%
! GGCTTTGGTAGATACACTAG+TGG + tig0042499:2994-3013 Msa1462660:CDS 45.0%
TCTCGTGCAAGTTGTTGCTA+AGG + tig0042499:3030-3049 Msa1462660:CDS 45.0%
TCATTCGATGGATGCAGAAC+AGG + tig0042499:3249-3268 Msa1462660:CDS 45.0%
AATGGTGAAACACCCGTACC+GGG + tig0042499:2313-2332 Msa1462660:intron 50.0%
! GATGAAAATAGTGGAGGCGG+TGG + tig0042499:2491-2510 Msa1462660:intron 50.0%
CAAGCCAGGATGACCAAGAA+GGG + tig0042499:2944-2963 Msa1462660:CDS 50.0%
CTTTCCCTTCTTGGTCATCC+TGG - tig0042499:2951-2970 Msa1462660:intergenic 50.0%
CAGGATGACCAAGAAGGGAA+AGG + tig0042499:2949-2968 Msa1462660:CDS 50.0%
GGAAAGGGCCACAGTAATGT+TGG + tig0042499:2965-2984 Msa1462660:CDS 50.0%
TGAGGAAGCAGTTACACACG+AGG + tig0042499:3210-3229 Msa1462660:CDS 50.0%
AATGGTGAAACACCCGTACC+GGG + tig0042499:2313-2332 Msa1462660:intron 50.0%
! GATGAAAATAGTGGAGGCGG+TGG + tig0042499:2491-2510 Msa1462660:intron 50.0%
CAAGCCAGGATGACCAAGAA+GGG + tig0042499:2944-2963 Msa1462660:CDS 50.0%
CTTTCCCTTCTTGGTCATCC+TGG - tig0042499:2951-2970 Msa1462660:intergenic 50.0%
CAGGATGACCAAGAAGGGAA+AGG + tig0042499:2949-2968 Msa1462660:CDS 50.0%
GGAAAGGGCCACAGTAATGT+TGG + tig0042499:2965-2984 Msa1462660:CDS 50.0%
TGAGGAAGCAGTTACACACG+AGG + tig0042499:3210-3229 Msa1462660:CDS 50.0%
ATAGGTACGGGTTCGGCACT+CGG - tig0042499:2724-2743 Msa1462660:intergenic 55.0%
GCAAGCCAGGATGACCAAGA+AGG + tig0042499:2943-2962 Msa1462660:CDS 55.0%
ACTGTGGCCCTTTCCCTTCT+TGG - tig0042499:2960-2979 Msa1462660:intergenic 55.0%
GTAGGGAGTAACGCTTCCTG+CGG + tig0042499:3156-3175 Msa1462660:intron 55.0%
TTTCCACCAACACCATCCGC+AGG - tig0042499:3175-3194 Msa1462660:intergenic 55.0%
ATAGGTACGGGTTCGGCACT+CGG - tig0042499:2724-2743 Msa1462660:intergenic 55.0%
GCAAGCCAGGATGACCAAGA+AGG + tig0042499:2943-2962 Msa1462660:CDS 55.0%
ACTGTGGCCCTTTCCCTTCT+TGG - tig0042499:2960-2979 Msa1462660:intergenic 55.0%
GTAGGGAGTAACGCTTCCTG+CGG + tig0042499:3156-3175 Msa1462660:intron 55.0%
TTTCCACCAACACCATCCGC+AGG - tig0042499:3175-3194 Msa1462660:intergenic 55.0%
TACGGGTTCGGCACTCGGTA+CGG - tig0042499:2719-2738 Msa1462660:intergenic 60.0%
GGAGTAACGCTTCCTGCGGA+TGG + tig0042499:3160-3179 Msa1462660:CDS 60.0%
ACGCTTCCTGCGGATGGTGT+TGG + tig0042499:3166-3185 Msa1462660:CDS 60.0%
! CTTCCTGCGGATGGTGTTGG+TGG + tig0042499:3169-3188 Msa1462660:CDS 60.0%
TACGGGTTCGGCACTCGGTA+CGG - tig0042499:2719-2738 Msa1462660:intergenic 60.0%
GGAGTAACGCTTCCTGCGGA+TGG + tig0042499:3160-3179 Msa1462660:CDS 60.0%
ACGCTTCCTGCGGATGGTGT+TGG + tig0042499:3166-3185 Msa1462660:CDS 60.0%
! CTTCCTGCGGATGGTGTTGG+TGG + tig0042499:3169-3188 Msa1462660:CDS 60.0%
ACGGGTTCGGCACTCGGTAC+GGG - tig0042499:2718-2737 Msa1462660:intergenic 65.0%
ACGGGTTCGGCACTCGGTAC+GGG - tig0042499:2718-2737 Msa1462660:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0042499 gene 1607 3282 1607 ID=Msa1462660;Name=Msa1462660
tig0042499 mRNA 1607 3282 1607 ID=Msa1462660-mRNA-1;Parent=Msa1462660;Name=Msa1462660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=114|1|0.66|1|1|1|3|0|145
tig0042499 exon 1607 1910 1607 ID=Msa1462660-mRNA-1:exon:23762;Parent=Msa1462660-mRNA-1
tig0042499 exon 2930 3051 2930 ID=Msa1462660-mRNA-1:exon:23763;Parent=Msa1462660-mRNA-1
tig0042499 exon 3160 3282 3160 ID=Msa1462660-mRNA-1:exon:23764;Parent=Msa1462660-mRNA-1
tig0042499 five_prime_UTR 1607 1720 1607 ID=Msa1462660-mRNA-1:five_prime_utr;Parent=Msa1462660-mRNA-1
tig0042499 CDS 1721 1910 1721 ID=Msa1462660-mRNA-1:cds;Parent=Msa1462660-mRNA-1
tig0042499 CDS 2930 3051 2930 ID=Msa1462660-mRNA-1:cds;Parent=Msa1462660-mRNA-1
tig0042499 CDS 3160 3282 3160 ID=Msa1462660-mRNA-1:cds;Parent=Msa1462660-mRNA-1
Gene Sequence

>Msa1462660

ATGGGTTACAGAAAAAAGAACCTGTTGAAAGAGGATCACACTATTTCTTCTTCAAATTGTAATAAATCATTGAGTGAAGCAATGCTTGCAATCACTATGAGTATCATTGGTTTACCTGTTGATGTTCATGTTAAAGATGGTTCTGTATATTCTGGAATCTTCTTCACTGCTTCTACTGAATCAAATTTCGGGATTGTTTTGAAGCAAGCCAGGATGACCAAGAAGGGAAAGGGCCACAGTAATGTTGGAAACGAGGCTTTGGTAGATACACTAGTGGTTTTATCAGATGATCTCGTGCAAGTTGTTGCTAAGGGAGTAACGCTTCCTGCGGATGGTGTTGGTGGAAATATAACTGGTGATTATGAGGAAGCAGTTACACACGAGGTTTGTTCTGCTGATAGTCATTCGATGGATGCAGAACAGGTTAATCAATCA

Protein sequence

>Msa1462660

MGYRKKNLLKEDHTISSSNCNKSLSEAMLAITMSIIGLPVDVHVKDGSVYSGIFFTASTESNFGIVLKQARMTKKGKGHSNVGNEALVDTLVVLSDDLVQVVAKGVTLPADGVGGNITGDYEEAVTHEVCSADSHSMDAEQVNQS