Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684160 | XP_013456128.1 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 2.15e-62 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684160 | sp|Q9XGX8|TIM9_MESCR | 79.570 | 93 | 19 | 0 | 1 | 93 | 1 | 93 | 8.09e-53 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684160 | I3SBU8 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 1.03e-62 | 194 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042280 | Msa0684160 | 0.803336 | 3.659690e-49 | -8.615850e-47 |
| Msa0045730 | Msa0684160 | 0.808296 | 3.320803e-50 | -8.615850e-47 |
| Msa0047160 | Msa0684160 | 0.833325 | 5.690788e-56 | -8.615850e-47 |
| Msa0048180 | Msa0684160 | 0.806231 | 9.094719e-50 | -8.615850e-47 |
| Msa0094470 | Msa0684160 | 0.818003 | 2.458571e-52 | -8.615850e-47 |
| Msa0097600 | Msa0684160 | 0.836647 | 8.276984e-57 | -8.615850e-47 |
| Msa0116130 | Msa0684160 | 0.812430 | 4.256257e-51 | -8.615850e-47 |
| Msa0118710 | Msa0684160 | 0.848610 | 5.492847e-60 | -8.615850e-47 |
| Msa0603320 | Msa0684160 | 0.801676 | 8.047731e-49 | -8.615850e-47 |
| Msa0612390 | Msa0684160 | 0.825933 | 3.576742e-54 | -8.615850e-47 |
| Msa0615580 | Msa0684160 | 0.802851 | 4.609950e-49 | -8.615850e-47 |
| Msa0618930 | Msa0684160 | 0.816316 | 5.888859e-52 | -8.615850e-47 |
| Msa0619860 | Msa0684160 | 0.802200 | 6.279519e-49 | -8.615850e-47 |
| Msa0623200 | Msa0684160 | 0.803534 | 3.329881e-49 | -8.615850e-47 |
| Msa0666230 | Msa0684160 | 0.828549 | 8.451721e-55 | -8.615850e-47 |
| Msa0683780 | Msa0684160 | 0.809956 | 1.464555e-50 | -8.615850e-47 |
| Msa0684160 | Msa0719420 | 0.820980 | 5.149021e-53 | -8.615850e-47 |
| Msa0684160 | Msa0729200 | 0.815736 | 7.934056e-52 | -8.615850e-47 |
| Msa0684160 | Msa0750920 | 0.820083 | 8.270530e-53 | -8.615850e-47 |
| Msa0684160 | Msa0769590 | 0.821445 | 4.021527e-53 | -8.615850e-47 |
| Msa0684160 | Msa0785130 | 0.803083 | 4.128156e-49 | -8.615850e-47 |
| Msa0684160 | Msa0789680 | 0.817738 | 2.822729e-52 | -8.615850e-47 |
| Msa0684160 | Msa0806880 | 0.834949 | 2.229146e-56 | -8.615850e-47 |
| Msa0684160 | Msa0819060 | 0.801914 | 7.190500e-49 | -8.615850e-47 |
| Msa0684160 | Msa0913240 | 0.811896 | 5.566983e-51 | -8.615850e-47 |
| Msa0684160 | Msa0925770 | 0.815966 | 7.048943e-52 | -8.615850e-47 |
| Msa0684160 | Msa0963020 | 0.813377 | 2.640461e-51 | -8.615850e-47 |
| Msa0684160 | Msa1006840 | 0.807008 | 6.233455e-50 | -8.615850e-47 |
| Msa0684160 | Msa1019240 | 0.840046 | 1.100735e-57 | -8.615850e-47 |
| Msa0684160 | Msa1019260 | 0.820937 | 5.267948e-53 | -8.615850e-47 |
| Msa0684160 | Msa1072710 | 0.802383 | 5.758293e-49 | -8.615850e-47 |
| Msa0684160 | Msa1088490 | 0.811386 | 7.183998e-51 | -8.615850e-47 |
| Msa0684160 | Msa1093330 | 0.809700 | 1.661937e-50 | -8.615850e-47 |
| Msa0684160 | Msa1104140 | 0.809630 | 1.721045e-50 | -8.615850e-47 |
| Msa0684160 | Msa1104210 | 0.827771 | 1.301220e-54 | -8.615850e-47 |
| Msa0684160 | Msa1135890 | 0.815054 | 1.125455e-51 | -8.615850e-47 |
| Msa0684160 | Msa1166870 | 0.849377 | 3.363075e-60 | -8.615850e-47 |
| Msa0684160 | Msa1179950 | 0.831332 | 1.773069e-55 | -8.615850e-47 |
| Msa0684160 | Msa1179980 | 0.839839 | 1.245939e-57 | -8.615850e-47 |
| Msa0684160 | Msa1195300 | 0.808895 | 2.473033e-50 | -8.615850e-47 |
| Msa0684160 | Msa1265630 | 0.830476 | 2.874319e-55 | -8.615850e-47 |
| Msa0684160 | Msa1270620 | 0.839368 | 1.652568e-57 | -8.615850e-47 |
| Msa0684160 | Msa1270690 | 0.836794 | 7.596053e-57 | -8.615850e-47 |
| Msa0684160 | Msa1306990 | 0.829418 | 5.204732e-55 | -8.615850e-47 |
| Msa0684160 | Msa1331710 | 0.811622 | 6.384937e-51 | -8.615850e-47 |
| Msa0684160 | Msa1349570 | 0.803903 | 2.790991e-49 | -8.615850e-47 |
| Msa0684160 | Msa1355700 | 0.824140 | 9.486405e-54 | -8.615850e-47 |
| Msa0684160 | Msa1363330 | 0.811850 | 5.696909e-51 | -8.615850e-47 |
| Msa0684160 | Msa1369190 | 0.840592 | 7.925914e-58 | -8.615850e-47 |
| Msa0684160 | Msa1386600 | 0.812233 | 4.700087e-51 | -8.615850e-47 |
| Msa0684160 | Msa1387410 | 0.825600 | 4.291409e-54 | -8.615850e-47 |
| Msa0684160 | Msa1413500 | 0.838723 | 2.427637e-57 | -8.615850e-47 |
| Msa0684160 | Msa1426490 | 0.804819 | 1.799191e-49 | -8.615850e-47 |
| Msa0126770 | Msa0684160 | 0.807741 | 4.358102e-50 | -8.615850e-47 |
| Msa0126840 | Msa0684160 | 0.816839 | 4.495868e-52 | -8.615850e-47 |
| Msa0133540 | Msa0684160 | 0.816661 | 4.929674e-52 | -8.615850e-47 |
| Msa0165950 | Msa0684160 | 0.812401 | 4.319603e-51 | -8.615850e-47 |
| Msa0167480 | Msa0684160 | 0.836041 | 1.180539e-56 | -8.615850e-47 |
| Msa0171850 | Msa0684160 | 0.812879 | 3.395047e-51 | -8.615850e-47 |
| Msa0181490 | Msa0684160 | 0.809901 | 1.504436e-50 | -8.615850e-47 |
| Msa0231100 | Msa0684160 | 0.826662 | 2.398936e-54 | -8.615850e-47 |
| Msa0231660 | Msa0684160 | 0.805898 | 1.068591e-49 | -8.615850e-47 |
| Msa0443390 | Msa0684160 | 0.823795 | 1.142905e-53 | -8.615850e-47 |
| Msa0458060 | Msa0684160 | 0.804358 | 2.244919e-49 | -8.615850e-47 |
| Msa0262480 | Msa0684160 | 0.823725 | 1.186457e-53 | -8.615850e-47 |
| Msa0291520 | Msa0684160 | 0.838275 | 3.167181e-57 | -8.615850e-47 |
| Msa0300350 | Msa0684160 | 0.818654 | 1.750657e-52 | -8.615850e-47 |
| Msa0306690 | Msa0684160 | 0.825883 | 3.675469e-54 | -8.615850e-47 |
| Msa0310080 | Msa0684160 | 0.806304 | 8.777812e-50 | -8.615850e-47 |
| Msa0526540 | Msa0684160 | 0.816518 | 5.307319e-52 | -8.615850e-47 |
| Msa0534750 | Msa0684160 | 0.809339 | 1.986888e-50 | -8.615850e-47 |
| Msa0550570 | Msa0684160 | 0.814614 | 1.408174e-51 | -8.615850e-47 |
| Msa0571920 | Msa0684160 | 0.820458 | 6.785456e-53 | -8.615850e-47 |
| Msa0576940 | Msa0684160 | 0.819597 | 1.068109e-52 | -8.615850e-47 |
| Msa0581280 | Msa0684160 | 0.801384 | 9.237004e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684160 | MtrunA17_Chr4g0031531 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 1.98e-66 | 194 |
| Msa0684160 | MtrunA17_Chr4g0009801 | 59.140 | 93 | 38 | 0 | 1 | 93 | 1 | 93 | 1.75e-40 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684160 | AT3G46560.1 | 78.495 | 93 | 20 | 0 | 1 | 93 | 1 | 93 | 4.58e-51 | 155 |
Find 37 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGATTATACGCAGTGATTT+AGG | 0.125954 | 4_4:-47484364 | None:intergenic |
| CAAAAGCATGATTGCTGATA+TGG | 0.238381 | 4_4:+47484402 | Msa0684160:CDS |
| CGATTATACGCAGTGATTTA+GGG | 0.278105 | 4_4:-47484363 | None:intergenic |
| TGAGCTAGGGTTTATCTTTA+CGG | 0.322138 | 4_4:+47484316 | Msa0684160:five_prime_UTR |
| TATAATCGTTCGATCCAAAA+TGG | 0.326606 | 4_4:+47484378 | Msa0684160:exon |
| AACCTCACCTGTCACGGATT+TGG | 0.342119 | 4_4:-47484477 | None:intergenic |
| TGCTGAAATCTAAATAAGTT+CGG | 0.376638 | 4_4:+47488352 | Msa0684160:three_prime_UTR |
| CCAAGTTATTATACATTCTC+AGG | 0.398941 | 4_4:-47488049 | None:intergenic |
| AATCTTGAGTTGCAGCTCCT+TGG | 0.400935 | 4_4:-47488211 | None:intergenic |
| ATTCTTTGTTTATCTGCCTC+TGG | 0.426356 | 4_4:-47484433 | None:intergenic |
| GAAATTTCTCTGCACATCTT+CGG | 0.438471 | 4_4:-47488145 | None:intergenic |
| GCAGAAAAGTGCTGAACTGC+GGG | 0.450445 | 4_4:+47488538 | Msa0684160:three_prime_UTR |
| TCTTCTTCCACACTTGAGCT+AGG | 0.452406 | 4_4:+47484302 | Msa0684160:five_prime_UTR |
| GCTGAAATCTAAATAAGTTC+GGG | 0.457487 | 4_4:+47488353 | Msa0684160:three_prime_UTR |
| CTTCTTCCACACTTGAGCTA+GGG | 0.471850 | 4_4:+47484303 | Msa0684160:five_prime_UTR |
| CCTGAGAATGTATAATAACT+TGG | 0.477400 | 4_4:+47488049 | Msa0684160:CDS |
| CTCTGCACATCTTCGGACAC+AGG | 0.487135 | 4_4:-47488138 | None:intergenic |
| TTCTTTGTGAAGATCAGCAC+TGG | 0.499728 | 4_4:+47488455 | Msa0684160:three_prime_UTR |
| AGAGGCAGATAAACAAAGAA+TGG | 0.502607 | 4_4:+47484435 | Msa0684160:CDS |
| ATCAGCTCCAAATCCGTGAC+AGG | 0.514968 | 4_4:+47484470 | Msa0684160:CDS |
| TTTGGGAACCTCACCTGTCA+CGG | 0.540460 | 4_4:-47484483 | None:intergenic |
| ATAATGACAATCAAGAATCT+CGG | 0.547637 | 4_4:-47488406 | None:intergenic |
| AGATTGAAGTCTATTAACAT+TGG | 0.556769 | 4_4:+47488229 | Msa0684160:exon |
| GATTTGGAGCTGATCGATCA+TGG | 0.557131 | 4_4:-47484461 | None:intergenic |
| CTGAAGCACTCGATGCGTGT+TGG | 0.557558 | 4_4:+47488167 | Msa0684160:CDS |
| GAGAATGTATAATAACTTGG+TGG | 0.582489 | 4_4:+47488052 | Msa0684160:CDS |
| CTGAGATGGACTTACCATGA+AGG | 0.587556 | 4_4:-47488493 | None:intergenic |
| ACTCGATGCGTGTTGGCATG+AGG | 0.595161 | 4_4:+47488174 | Msa0684160:CDS |
| GATAAACCCTAGCTCAAGTG+TGG | 0.600396 | 4_4:-47484309 | None:intergenic |
| TGAGATGGACTTACCATGAA+GGG | 0.601473 | 4_4:-47488492 | None:intergenic |
| TAAATCCCTGCAAAAGCAAG+AGG | 0.610554 | 4_4:+47488112 | Msa0684160:CDS |
| CAGAAAAGTGCTGAACTGCG+GGG | 0.648249 | 4_4:+47488539 | Msa0684160:three_prime_UTR |
| AGGTTTGCTGAGCTCAACCA+AGG | 0.659807 | 4_4:+47488194 | Msa0684160:CDS |
| GAGATGCTTTCATGATTGTG+TGG | 0.661772 | 4_4:+47488076 | Msa0684160:CDS |
| AAGAAGATGATATATATACT+AGG | 0.665897 | 4_4:-47484286 | None:intergenic |
| TGCAGAAAAGTGCTGAACTG+CGG | 0.682454 | 4_4:+47488537 | Msa0684160:three_prime_UTR |
| TGATATGGAAAATCTTCCAG+AGG | 0.718208 | 4_4:+47484417 | Msa0684160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAACCTAAATTTTTT+TGG | - | chr4_4:47484625-47484644 | None:intergenic | 10.0% |
| !!! | CATGTTATTTTTATTTTTTT+TGG | + | chr4_4:47485559-47485578 | Msa0684160:intron | 10.0% |
| !!! | TATCATATATTTTAAGATAT+AGG | + | chr4_4:47485586-47485605 | Msa0684160:intron | 10.0% |
| !!! | CTTAATTTATTAGATTTTAT+TGG | - | chr4_4:47485853-47485872 | None:intergenic | 10.0% |
| !! | TTTGTTTACCAAAAAAATTT+AGG | + | chr4_4:47484614-47484633 | Msa0684160:intron | 15.0% |
| !!! | AATTTAGGTTTTTTTTTTGT+TGG | + | chr4_4:47484629-47484648 | Msa0684160:intron | 15.0% |
| !!! | ATAATGTGTTGAATTTATTT+TGG | + | chr4_4:47484663-47484682 | Msa0684160:intron | 15.0% |
| !!! | TTGAATTTATTTTGGAATTT+GGG | + | chr4_4:47484671-47484690 | Msa0684160:intron | 15.0% |
| !! | AATAAATTAAGATTTAAACG+TGG | + | chr4_4:47485862-47485881 | Msa0684160:intron | 15.0% |
| !!! | TTTTTTTTTCTTTCTTTTGT+TGG | + | chr4_4:47486854-47486873 | Msa0684160:intron | 15.0% |
| !!! | TGAATCTTTTTTAAAATTTG+AGG | + | chr4_4:47486897-47486916 | Msa0684160:intron | 15.0% |
| !! | TAATTTATTAGAACTTATAG+CGG | - | chr4_4:47487843-47487862 | None:intergenic | 15.0% |
| !! | AAGAAGATGATATATATACT+AGG | - | chr4_4:47484289-47484308 | None:intergenic | 20.0% |
| !!! | GTTGAATTTATTTTGGAATT+TGG | + | chr4_4:47484670-47484689 | Msa0684160:intron | 20.0% |
| !!! | TGAATTTATTTTGGAATTTG+GGG | + | chr4_4:47484672-47484691 | Msa0684160:intron | 20.0% |
| !!! | TTTTTGTTGTCTATATAATG+TGG | + | chr4_4:47485064-47485083 | Msa0684160:intron | 20.0% |
| !! | TAAAATATTAGTAGTGTGTT+TGG | + | chr4_4:47485756-47485775 | Msa0684160:intron | 20.0% |
| !! | AAAATATTAGTAGTGTGTTT+GGG | + | chr4_4:47485757-47485776 | Msa0684160:intron | 20.0% |
| !!! | TTGAATCTGTTTTTTAATTG+AGG | + | chr4_4:47486028-47486047 | Msa0684160:intron | 20.0% |
| !!! | TGAATCTGTTTTTTAATTGA+GGG | + | chr4_4:47486029-47486048 | Msa0684160:intron | 20.0% |
| !! | TCATGCTAATTTATAAGTTA+TGG | + | chr4_4:47486054-47486073 | Msa0684160:intron | 20.0% |
| !! | CATGCTAATTTATAAGTTAT+GGG | + | chr4_4:47486055-47486074 | Msa0684160:intron | 20.0% |
| !!! | CATTTTTGTTTTTGGATAAT+AGG | + | chr4_4:47486268-47486287 | Msa0684160:intron | 20.0% |
| !! | GTTTAATGATCTATTTAATG+TGG | + | chr4_4:47486431-47486450 | Msa0684160:intron | 20.0% |
| !!! | GCTTTATTATTTACTCAATT+TGG | + | chr4_4:47486718-47486737 | Msa0684160:intron | 20.0% |
| !! | AATAATTTGAGCTTATCTAT+TGG | - | chr4_4:47487667-47487686 | None:intergenic | 20.0% |
| !! | TCAATATAGTACTTTACTTA+GGG | - | chr4_4:47487703-47487722 | None:intergenic | 20.0% |
| !!! | ATTTTACATATGACTTTGTT+AGG | + | chr4_4:47487896-47487915 | Msa0684160:intron | 20.0% |
| !!! | TTTTACATATGACTTTGTTA+GGG | + | chr4_4:47487897-47487916 | Msa0684160:intron | 20.0% |
| !! | TTATTGCTTCATTACATTAT+GGG | + | chr4_4:47487927-47487946 | Msa0684160:intron | 20.0% |
| ! | AAAAAACCCTAAACTTTACA+AGG | - | chr4_4:47484597-47484616 | None:intergenic | 25.0% |
| ! | ATAGACAACAAAAATCAATG+TGG | - | chr4_4:47485058-47485077 | None:intergenic | 25.0% |
| ! | AACTTCAATTGTTATGACTT+AGG | + | chr4_4:47485255-47485274 | Msa0684160:intron | 25.0% |
| ! | ACTTCAATTGTTATGACTTA+GGG | + | chr4_4:47485256-47485275 | Msa0684160:intron | 25.0% |
| ! | GATTAGATAAACCATTAGAA+AGG | + | chr4_4:47485387-47485406 | Msa0684160:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr4_4:47485436-47485455 | None:intergenic | 25.0% |
| !!! | TTCTAATGAACTAGTCTTTT+GGG | - | chr4_4:47485675-47485694 | None:intergenic | 25.0% |
| ! | CTCAAAGTTAGTACATTTAT+TGG | + | chr4_4:47485941-47485960 | Msa0684160:intron | 25.0% |
| !!! | TTTTAAGGAGAACATAACTA+TGG | - | chr4_4:47486124-47486143 | None:intergenic | 25.0% |
| !!! | GATTTAATGAACTAGTCTTT+GGG | - | chr4_4:47486368-47486387 | None:intergenic | 25.0% |
| !! | CAAAGACTAGTTCATTAAAT+CGG | + | chr4_4:47486367-47486386 | Msa0684160:intron | 25.0% |
| !! | AAAGACTAGTTCATTAAATC+GGG | + | chr4_4:47486368-47486387 | Msa0684160:intron | 25.0% |
| ! | AACGATTAAGAAAAATCAAG+TGG | - | chr4_4:47486414-47486433 | None:intergenic | 25.0% |
| ! | ATTTAATGTGGAACTCATAA+AGG | + | chr4_4:47486443-47486462 | Msa0684160:intron | 25.0% |
| ! | TTCATTCATCTATCACTATT+TGG | + | chr4_4:47486535-47486554 | Msa0684160:intron | 25.0% |
| ! | GTAAATAATAAAGCTCAATG+TGG | - | chr4_4:47486712-47486731 | None:intergenic | 25.0% |
| ! | AAATAAATGTATGAACTTCG+AGG | - | chr4_4:47486803-47486822 | None:intergenic | 25.0% |
| !!! | TTTTAAAATTTGAGGCTTCA+TGG | + | chr4_4:47486905-47486924 | Msa0684160:intron | 25.0% |
| !!! | TTTTAAGGAGAACATCAATA+TGG | - | chr4_4:47487008-47487027 | None:intergenic | 25.0% |
| ! | CAAATTATCAACATGTCATA+AGG | + | chr4_4:47487599-47487618 | Msa0684160:intron | 25.0% |
| ! | CTCAATATAGTACTTTACTT+AGG | - | chr4_4:47487704-47487723 | None:intergenic | 25.0% |
| ! | GTTATTGCTTCATTACATTA+TGG | + | chr4_4:47487926-47487945 | Msa0684160:intron | 25.0% |
| ! | TATTGCTTCATTACATTATG+GGG | + | chr4_4:47487928-47487947 | Msa0684160:intron | 25.0% |
| ! | AGATTGAAGTCTATTAACAT+TGG | + | chr4_4:47488229-47488248 | Msa0684160:exon | 25.0% |
| ! | TGCTGAAATCTAAATAAGTT+CGG | + | chr4_4:47488352-47488371 | Msa0684160:three_prime_UTR | 25.0% |
| ! | ATAATGACAATCAAGAATCT+CGG | - | chr4_4:47488409-47488428 | None:intergenic | 25.0% |
| !!! | TGATTTAGGGTTTTGAGATT+GGG | - | chr4_4:47484353-47484372 | None:intergenic | 30.0% |
| TATAATCGTTCGATCCAAAA+TGG | + | chr4_4:47484378-47484397 | Msa0684160:exon | 30.0% | |
| ! | AATCATGCTTTTGTCCATTT+TGG | - | chr4_4:47484395-47484414 | None:intergenic | 30.0% |
| ! | AAAAGCGAAGCAATGATTTT+GGG | - | chr4_4:47484503-47484522 | None:intergenic | 30.0% |
| ! | AAAAAGCGAAGCAATGATTT+TGG | - | chr4_4:47484504-47484523 | None:intergenic | 30.0% |
| AATAAATGTACCTCCTTTGA+GGG | - | chr4_4:47484565-47484584 | None:intergenic | 30.0% | |
| AAATAAATGTACCTCCTTTG+AGG | - | chr4_4:47484566-47484585 | None:intergenic | 30.0% | |
| ATTTGCACCTTGTAAAGTTT+AGG | + | chr4_4:47484587-47484606 | Msa0684160:intron | 30.0% | |
| TTTGCACCTTGTAAAGTTTA+GGG | + | chr4_4:47484588-47484607 | Msa0684160:intron | 30.0% | |
| !! | TTTTAAGGAGAACATCACTA+TGG | - | chr4_4:47484767-47484786 | None:intergenic | 30.0% |
| !!! | TGTCATGTTTTTTGGAGAAT+AGG | + | chr4_4:47484904-47484923 | Msa0684160:intron | 30.0% |
| ! | CATCTAACTAACTAGTCTAT+GGG | - | chr4_4:47485020-47485039 | None:intergenic | 30.0% |
| ! | CATAGACTAGTTAGTTAGAT+GGG | + | chr4_4:47485019-47485038 | Msa0684160:intron | 30.0% |
| TGAAGTTATCATTGTGAGTT+AGG | - | chr4_4:47485242-47485261 | None:intergenic | 30.0% | |
| AACCATTAGAAAGGATTTAG+AGG | + | chr4_4:47485396-47485415 | Msa0684160:intron | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr4_4:47485440-47485459 | Msa0684160:intron | 30.0% |
| !!! | CTTCTAATGAACTAGTCTTT+TGG | - | chr4_4:47485676-47485695 | None:intergenic | 30.0% |
| ! | CAAAAGACTAGTTCATTAGA+AGG | + | chr4_4:47485674-47485693 | Msa0684160:intron | 30.0% |
| ! | TTTCCTACCTTGCAAATTTT+TGG | + | chr4_4:47485964-47485983 | Msa0684160:intron | 30.0% |
| ! | TTCCTACCTTGCAAATTTTT+GGG | + | chr4_4:47485965-47485984 | Msa0684160:intron | 30.0% |
| AACTAACCCAAAAATTTGCA+AGG | - | chr4_4:47485974-47485993 | None:intergenic | 30.0% | |
| GTAAAAAGCAAGCACAAAAT+TGG | - | chr4_4:47486095-47486114 | None:intergenic | 30.0% | |
| !! | TGACTTTTCAATGTTGCTTA+TGG | + | chr4_4:47486150-47486169 | Msa0684160:intron | 30.0% |
| !!! | GTAGCTGTCATTTTTGTTTT+TGG | + | chr4_4:47486260-47486279 | Msa0684160:intron | 30.0% |
| !!! | TTCGGTGTCTAAGATTTTTA+TGG | + | chr4_4:47486315-47486334 | Msa0684160:intron | 30.0% |
| !! | CGATTTAATGAACTAGTCTT+TGG | - | chr4_4:47486369-47486388 | None:intergenic | 30.0% |
| TGTACCTTAATTCAGTCTAT+AGG | + | chr4_4:47486561-47486580 | Msa0684160:intron | 30.0% | |
| TCTACCTATAGACTGAATTA+AGG | - | chr4_4:47486568-47486587 | None:intergenic | 30.0% | |
| ! | TTAGTGTTTTCATTGAGAGT+TGG | - | chr4_4:47486603-47486622 | None:intergenic | 30.0% |
| AGTAACACCTAAAATTTGCA+CGG | - | chr4_4:47486834-47486853 | None:intergenic | 30.0% | |
| !! | TTGGTTTGTATTAGCATTAC+AGG | + | chr4_4:47486873-47486892 | Msa0684160:intron | 30.0% |
| ! | CAAAATTTGCCACGATTTTA+AGG | - | chr4_4:47486965-47486984 | None:intergenic | 30.0% |
| CTACAGAAAGGAATAGAATA+AGG | - | chr4_4:47487320-47487339 | None:intergenic | 30.0% | |
| TGAAGTTCTTTATCCAAACA+AGG | - | chr4_4:47487444-47487463 | None:intergenic | 30.0% | |
| ! | TCTATTTTCATAAGTTGTCC+TGG | + | chr4_4:47487542-47487561 | Msa0684160:intron | 30.0% |
| CTTTCTTATCTACTCAATGT+GGG | + | chr4_4:47487724-47487743 | Msa0684160:intron | 30.0% | |
| CCAAGTTATTATACATTCTC+AGG | - | chr4_4:47488052-47488071 | None:intergenic | 30.0% | |
| CCTGAGAATGTATAATAACT+TGG | + | chr4_4:47488049-47488068 | Msa0684160:CDS | 30.0% | |
| GAGAATGTATAATAACTTGG+TGG | + | chr4_4:47488052-47488071 | Msa0684160:CDS | 30.0% | |
| !!! | TACAGTTTTGTTTGAAAGTG+AGG | + | chr4_4:47488281-47488300 | Msa0684160:three_prime_UTR | 30.0% |
| GCTGAAATCTAAATAAGTTC+GGG | + | chr4_4:47488353-47488372 | Msa0684160:three_prime_UTR | 30.0% | |
| ! | TGTTGTAATTTTACCCTTCA+TGG | + | chr4_4:47488479-47488498 | Msa0684160:three_prime_UTR | 30.0% |
| TGAGCTAGGGTTTATCTTTA+CGG | + | chr4_4:47484316-47484335 | Msa0684160:five_prime_UTR | 35.0% | |
| !!! | GTGATTTAGGGTTTTGAGAT+TGG | - | chr4_4:47484354-47484373 | None:intergenic | 35.0% |
| CGATTATACGCAGTGATTTA+GGG | - | chr4_4:47484366-47484385 | None:intergenic | 35.0% | |
| ACGATTATACGCAGTGATTT+AGG | - | chr4_4:47484367-47484386 | None:intergenic | 35.0% | |
| ! | CAAAAGCATGATTGCTGATA+TGG | + | chr4_4:47484402-47484421 | Msa0684160:CDS | 35.0% |
| TGATATGGAAAATCTTCCAG+AGG | + | chr4_4:47484417-47484436 | Msa0684160:CDS | 35.0% | |
| ! | ATTCTTTGTTTATCTGCCTC+TGG | - | chr4_4:47484436-47484455 | None:intergenic | 35.0% |
| AGAGGCAGATAAACAAAGAA+TGG | + | chr4_4:47484435-47484454 | Msa0684160:CDS | 35.0% | |
| ATAAATGTACCTCCTTTGAG+GGG | - | chr4_4:47484564-47484583 | None:intergenic | 35.0% | |
| !!! | CAATAGTCACACTGGTTTTA+AGG | - | chr4_4:47484782-47484801 | None:intergenic | 35.0% |
| ! | TGACTATTGAATGTTGCTTC+TGG | + | chr4_4:47484793-47484812 | Msa0684160:intron | 35.0% |
| !!! | CTTGTAGCTGTCATGTTTTT+TGG | + | chr4_4:47484896-47484915 | Msa0684160:intron | 35.0% |
| ! | ATGCTGTCTTTTAGTACCTT+TGG | + | chr4_4:47484942-47484961 | Msa0684160:intron | 35.0% |
| ! | TGCTGTCTTTTAGTACCTTT+GGG | + | chr4_4:47484943-47484962 | Msa0684160:intron | 35.0% |
| ! | CCATCTAACTAACTAGTCTA+TGG | - | chr4_4:47485021-47485040 | None:intergenic | 35.0% |
| ! | CCATAGACTAGTTAGTTAGA+TGG | + | chr4_4:47485018-47485037 | Msa0684160:intron | 35.0% |
| !! | AAAGTCATTGGCTCTTATAG+AGG | - | chr4_4:47485107-47485126 | None:intergenic | 35.0% |
| AAGGGATAACAGAAAGTCAT+TGG | - | chr4_4:47485119-47485138 | None:intergenic | 35.0% | |
| TGTGAGTTAGGATACAGAAA+AGG | - | chr4_4:47485230-47485249 | None:intergenic | 35.0% | |
| GTTATGACTTAGGGTATGTT+TGG | + | chr4_4:47485265-47485284 | Msa0684160:intron | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | - | chr4_4:47485401-47485420 | None:intergenic | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr4_4:47485420-47485439 | Msa0684160:intron | 35.0% |
| AAAACTCAATGTGGTACCTA+AGG | - | chr4_4:47485712-47485731 | None:intergenic | 35.0% | |
| GTAGACAAGAAAACTCAATG+TGG | - | chr4_4:47485721-47485740 | None:intergenic | 35.0% | |
| ! | TTTTCTTGTCTACTCGATGT+TGG | + | chr4_4:47485728-47485747 | Msa0684160:intron | 35.0% |
| ! | GTTTGGGTTTCAGTTCAAAA+AGG | + | chr4_4:47485773-47485792 | Msa0684160:intron | 35.0% |
| AACCCAAAAATTTGCAAGGT+AGG | - | chr4_4:47485970-47485989 | None:intergenic | 35.0% | |
| !!! | GAAAAGTCACACTGGTTTTA+AGG | - | chr4_4:47486139-47486158 | None:intergenic | 35.0% |
| !! | AATGTTGCTTATGGACGTTT+TGG | + | chr4_4:47486159-47486178 | Msa0684160:intron | 35.0% |
| !! | ATGTTGCTTATGGACGTTTT+GGG | + | chr4_4:47486160-47486179 | Msa0684160:intron | 35.0% |
| CTTAGATTTGTGCTGTCTTT+CGG | + | chr4_4:47486297-47486316 | Msa0684160:intron | 35.0% | |
| !! | GGTGTCTAAGATTTTTATGG+TGG | + | chr4_4:47486318-47486337 | Msa0684160:intron | 35.0% |
| CAAGTGGTAATTAAACCATG+AGG | - | chr4_4:47486398-47486417 | None:intergenic | 35.0% | |
| AGTTATGACTTAAGCCAATG+TGG | + | chr4_4:47486631-47486650 | Msa0684160:intron | 35.0% | |
| ACCTAATGAACAAGTCTCTA+GGG | - | chr4_4:47486666-47486685 | None:intergenic | 35.0% | |
| AACCTAATGAACAAGTCTCT+AGG | - | chr4_4:47486667-47486686 | None:intergenic | 35.0% | |
| ! | TTTTCCACCGTGCAAATTTT+AGG | + | chr4_4:47486824-47486843 | Msa0684160:intron | 35.0% |
| CTTCATGGTATATAAGTCGT+TGG | + | chr4_4:47486920-47486939 | Msa0684160:intron | 35.0% | |
| !! | AATTTGCCACGATTTTAAGG+AGG | - | chr4_4:47486962-47486981 | None:intergenic | 35.0% |
| !!! | CAAAAGTCGCATTGGTTTTA+AGG | - | chr4_4:47487023-47487042 | None:intergenic | 35.0% |
| ! | GGAACTACATTTTCAACAAG+TGG | + | chr4_4:47484824-47484843 | Msa0684160:intron | 35.0% |
| CACTAGATGAAGGCTTAATT+AGG | + | chr4_4:47487144-47487163 | Msa0684160:intron | 35.0% | |
| ! | TTGGCTCTTGAAGTCTTAAA+GGG | - | chr4_4:47487209-47487228 | None:intergenic | 35.0% |
| TTGTGCTTTCATTGAGTGTT+AGG | - | chr4_4:47487343-47487362 | None:intergenic | 35.0% | |
| ! | TTTGTATTAGCTCTCCTTGT+GGG | - | chr4_4:47487382-47487401 | None:intergenic | 35.0% |
| !! | TTTTGTATTAGCTCTCCTTG+TGG | - | chr4_4:47487383-47487402 | None:intergenic | 35.0% |
| CTTATTTCCATAAGTTGTCC+AGG | - | chr4_4:47487563-47487582 | None:intergenic | 35.0% | |
| ! | TTATCCTTAGTTCTCCCAAA+CGG | + | chr4_4:47487624-47487643 | Msa0684160:intron | 35.0% |
| TACTTTACTTAGGGTCTGTT+GGG | - | chr4_4:47487694-47487713 | None:intergenic | 35.0% | |
| GCTTTCTTATCTACTCAATG+TGG | + | chr4_4:47487723-47487742 | Msa0684160:intron | 35.0% | |
| CTCATGATAGATTAGTGGTA+TGG | + | chr4_4:47487748-47487767 | Msa0684160:intron | 35.0% | |
| TATGACTTTGTTAGGGTGAT+TGG | + | chr4_4:47487904-47487923 | Msa0684160:intron | 35.0% | |
| ! | TTATGGGGCTCTTGTATTTT+TGG | + | chr4_4:47487943-47487962 | Msa0684160:intron | 35.0% |
| TAGTTGACATATTACCAGAC+AGG | + | chr4_4:47487994-47488013 | Msa0684160:intron | 35.0% | |
| AGTTGACATATTACCAGACA+GGG | + | chr4_4:47487995-47488014 | Msa0684160:intron | 35.0% | |
| GAAATTTCTCTGCACATCTT+CGG | - | chr4_4:47488148-47488167 | None:intergenic | 35.0% | |
| !! | AGAAGCTATTTTGTCTGAGA+TGG | - | chr4_4:47488510-47488529 | None:intergenic | 35.0% |
| ! | TAAATGTACCTCCTTTGAGG+GGG | - | chr4_4:47484563-47484582 | None:intergenic | 40.0% |
| GCAACATTCAATAGTCACAC+TGG | - | chr4_4:47484790-47484809 | None:intergenic | 40.0% | |
| !! | AATGTTGCTTCTGGACGTTT+TGG | + | chr4_4:47484802-47484821 | Msa0684160:intron | 40.0% |
| !! | ATGTTGCTTCTGGACGTTTT+GGG | + | chr4_4:47484803-47484822 | Msa0684160:intron | 40.0% |
| CATGACAGCTACAAGTGTTT+AGG | - | chr4_4:47484891-47484910 | None:intergenic | 40.0% | |
| TACCTTTGGGCTCTGTTTAA+TGG | + | chr4_4:47484956-47484975 | Msa0684160:intron | 40.0% | |
| TTCCATTAAACAGAGCCCAA+AGG | - | chr4_4:47484961-47484980 | None:intergenic | 40.0% | |
| ATGAAGGGCTGTCTATAAGT+TGG | - | chr4_4:47485192-47485211 | None:intergenic | 40.0% | |
| ATACAGAAAAGGCTGCCTAT+AGG | - | chr4_4:47485219-47485238 | None:intergenic | 40.0% | |
| TGACTTAGGGTATGTTTGGA+TGG | + | chr4_4:47485269-47485288 | Msa0684160:intron | 40.0% | |
| TTAGGGTATGTTTGGATGGA+GGG | + | chr4_4:47485273-47485292 | Msa0684160:intron | 40.0% | |
| ! | TATGTTTGGATGGAGGGTTT+TGG | + | chr4_4:47485279-47485298 | Msa0684160:intron | 40.0% |
| GGATTTAGAGGTCAATGAGT+TGG | + | chr4_4:47485408-47485427 | Msa0684160:intron | 40.0% | |
| ! | AAAGCCTTATCCCACTAAGT+GGG | - | chr4_4:47485490-47485509 | None:intergenic | 40.0% |
| AATGTGGTACCTAAGGCATA+AGG | - | chr4_4:47485705-47485724 | None:intergenic | 40.0% | |
| ! | GTAACAGTCTAGAGTCTGTT+TGG | - | chr4_4:47485831-47485850 | None:intergenic | 40.0% |
| ATAAGTTATGGGCAGCACAA+TGG | + | chr4_4:47486066-47486085 | Msa0684160:intron | 40.0% | |
| GCAACATTGAAAAGTCACAC+TGG | - | chr4_4:47486147-47486166 | None:intergenic | 40.0% | |
| AGATGAATGAAGCCACCAAA+GGG | - | chr4_4:47486526-47486545 | None:intergenic | 40.0% | |
| TAGATGAATGAAGCCACCAA+AGG | - | chr4_4:47486527-47486546 | None:intergenic | 40.0% | |
| ! | ACCCTAGAGACTTGTTCATT+AGG | + | chr4_4:47486662-47486681 | Msa0684160:intron | 40.0% |
| AATGTGGTACTTAAGTCGTG+AGG | - | chr4_4:47486696-47486715 | None:intergenic | 40.0% | |
| AGTACTTAACTCGTGTGCTA+TGG | - | chr4_4:47486747-47486766 | None:intergenic | 40.0% | |
| AACACCTAAAATTTGCACGG+TGG | - | chr4_4:47486831-47486850 | None:intergenic | 40.0% | |
| TGATGTCCTCCTTAAAATCG+TGG | + | chr4_4:47486953-47486972 | Msa0684160:intron | 40.0% | |
| GAAACGTTCAAAAGTCGCAT+TGG | - | chr4_4:47487031-47487050 | None:intergenic | 40.0% | |
| ! | CGACTTTTGAACGTTTCTTC+TGG | + | chr4_4:47487034-47487053 | Msa0684160:intron | 40.0% |
| ! | AACGTTTCTTCTGGACGTTT+TGG | + | chr4_4:47487043-47487062 | Msa0684160:intron | 40.0% |
| ! | ACGTTTCTTCTGGACGTTTT+GGG | + | chr4_4:47487044-47487063 | Msa0684160:intron | 40.0% |
| ! | CTCTCTAGTTCACTAGATGA+AGG | + | chr4_4:47487134-47487153 | Msa0684160:intron | 40.0% |
| ! | GTTGGCTCTTGAAGTCTTAA+AGG | - | chr4_4:47487210-47487229 | None:intergenic | 40.0% |
| TCAAGAGCCAACCTATACTA+CGG | + | chr4_4:47487218-47487237 | Msa0684160:intron | 40.0% | |
| AAATGAGTGAACCTGCCAAA+GGG | - | chr4_4:47487271-47487290 | None:intergenic | 40.0% | |
| TTGAGTGTTAGGCTACAGAA+AGG | - | chr4_4:47487332-47487351 | None:intergenic | 40.0% | |
| TGTTATGACTTAAGCCCACA+AGG | + | chr4_4:47487365-47487384 | Msa0684160:intron | 40.0% | |
| CATCAAGTCTAAGAACCTCA+TGG | + | chr4_4:47487411-47487430 | Msa0684160:intron | 40.0% | |
| AAACAAGGTCTTAAGCCATG+AGG | - | chr4_4:47487429-47487448 | None:intergenic | 40.0% | |
| TCATGGCTTAAGACCTTGTT+TGG | + | chr4_4:47487428-47487447 | Msa0684160:intron | 40.0% | |
| AAGTTGTCCTGGACAACTTA+TGG | + | chr4_4:47487553-47487572 | Msa0684160:intron | 40.0% | |
| GTACTTTACTTAGGGTCTGT+TGG | - | chr4_4:47487695-47487714 | None:intergenic | 40.0% | |
| TGGGTCTCATGATAGATTAG+TGG | + | chr4_4:47487743-47487762 | Msa0684160:intron | 40.0% | |
| CAAAATCAGATAACCCTGTC+TGG | - | chr4_4:47488011-47488030 | None:intergenic | 40.0% | |
| GAGATGCTTTCATGATTGTG+TGG | + | chr4_4:47488076-47488095 | Msa0684160:CDS | 40.0% | |
| TAAATCCCTGCAAAAGCAAG+AGG | + | chr4_4:47488112-47488131 | Msa0684160:CDS | 40.0% | |
| TTCTTTGTGAAGATCAGCAC+TGG | + | chr4_4:47488455-47488474 | Msa0684160:three_prime_UTR | 40.0% | |
| ! | TGAGATGGACTTACCATGAA+GGG | - | chr4_4:47488495-47488514 | None:intergenic | 40.0% |
| TCTTCTTCCACACTTGAGCT+AGG | + | chr4_4:47484302-47484321 | Msa0684160:five_prime_UTR | 45.0% | |
| CTTCTTCCACACTTGAGCTA+GGG | + | chr4_4:47484303-47484322 | Msa0684160:five_prime_UTR | 45.0% | |
| GATAAACCCTAGCTCAAGTG+TGG | - | chr4_4:47484312-47484331 | None:intergenic | 45.0% | |
| ! | GATTTGGAGCTGATCGATCA+TGG | - | chr4_4:47484464-47484483 | None:intergenic | 45.0% |
| ! | AAATGTACCTCCTTTGAGGG+GGG | - | chr4_4:47484562-47484581 | None:intergenic | 45.0% |
| !! | GTCATTGGCTCTTATAGAGG+TGG | - | chr4_4:47485104-47485123 | None:intergenic | 45.0% |
| TTCTGTTATCCCTTTCCCGT+TGG | + | chr4_4:47485125-47485144 | Msa0684160:intron | 45.0% | |
| TCGATGAATGAAGCCACCAA+CGG | - | chr4_4:47485144-47485163 | None:intergenic | 45.0% | |
| TGGTGGCTTCATTCATCGAT+CGG | + | chr4_4:47485145-47485164 | Msa0684160:intron | 45.0% | |
| CTTAGGGTATGTTTGGATGG+AGG | + | chr4_4:47485272-47485291 | Msa0684160:intron | 45.0% | |
| !!! | TTTGGATGGAGGGTTTTGGA+GGG | + | chr4_4:47485283-47485302 | Msa0684160:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4_4:47485489-47485508 | None:intergenic | 45.0% |
| ! | CAAAGCCTTATCCCACTAAG+TGG | - | chr4_4:47485491-47485510 | None:intergenic | 45.0% |
| CACTTAGTGGGATAAGGCTT+TGG | + | chr4_4:47485489-47485508 | Msa0684160:intron | 45.0% | |
| ! | TTAGTGGGATAAGGCTTTGG+TGG | + | chr4_4:47485492-47485511 | Msa0684160:intron | 45.0% |
| ! | TTCTGGAGGAGGTTTCTGAA+GGG | - | chr4_4:47485627-47485646 | None:intergenic | 45.0% |
| ! | TTTCTGGAGGAGGTTTCTGA+AGG | - | chr4_4:47485628-47485647 | None:intergenic | 45.0% |
| !!! | TTAAGGGTGTTTTCTGGAGG+AGG | - | chr4_4:47485638-47485657 | None:intergenic | 45.0% |
| !!! | AGCTTAAGGGTGTTTTCTGG+AGG | - | chr4_4:47485641-47485660 | None:intergenic | 45.0% |
| !!! | GTGAGCTTAAGGGTGTTTTC+TGG | - | chr4_4:47485644-47485663 | None:intergenic | 45.0% |
| AAAACACCCTTAAGCTCACC+AGG | + | chr4_4:47485645-47485664 | Msa0684160:intron | 45.0% | |
| !!! | ACTAGTCTTTTGGGTTCTCC+TGG | - | chr4_4:47485666-47485685 | None:intergenic | 45.0% |
| ! | AAGGAAGAGCCTTATGCCTT+AGG | + | chr4_4:47485693-47485712 | Msa0684160:intron | 45.0% |
| ATTAAATCGGGAGAGCCTCA+TGG | + | chr4_4:47486380-47486399 | Msa0684160:intron | 45.0% | |
| AAGGGATAACACTGGGTGAA+AGG | - | chr4_4:47486501-47486520 | None:intergenic | 45.0% | |
| AAGGGGAAAGGGATAACACT+GGG | - | chr4_4:47486508-47486527 | None:intergenic | 45.0% | |
| AAAGGGGAAAGGGATAACAC+TGG | - | chr4_4:47486509-47486528 | None:intergenic | 45.0% | |
| AGTGTTATCCCTTTCCCCTT+TGG | + | chr4_4:47486508-47486527 | Msa0684160:intron | 45.0% | |
| GATGAATGAAGCCACCAAAG+GGG | - | chr4_4:47486525-47486544 | None:intergenic | 45.0% | |
| TAGGGTTAGACTCTCCACAT+TGG | - | chr4_4:47486648-47486667 | None:intergenic | 45.0% | |
| AACTTCGAGGCGTAAATCTG+GGG | - | chr4_4:47486790-47486809 | None:intergenic | 45.0% | |
| GAACTTCGAGGCGTAAATCT+GGG | - | chr4_4:47486791-47486810 | None:intergenic | 45.0% | |
| TGAACTTCGAGGCGTAAATC+TGG | - | chr4_4:47486792-47486811 | None:intergenic | 45.0% | |
| GTGAAAGCCGTAGTATAGGT+TGG | - | chr4_4:47487228-47487247 | None:intergenic | 45.0% | |
| GGTGGTATTCCTTTACCCTT+TGG | + | chr4_4:47487253-47487272 | Msa0684160:intron | 45.0% | |
| GTATTCCTTTACCCTTTGGC+AGG | + | chr4_4:47487257-47487276 | Msa0684160:intron | 45.0% | |
| CAAATGAGTGAACCTGCCAA+AGG | - | chr4_4:47487272-47487291 | None:intergenic | 45.0% | |
| AAACACCCATGAGACCGTTT+GGG | - | chr4_4:47487641-47487660 | None:intergenic | 45.0% | |
| !! | ATAGCGGACTAGAGTGTGTT+TGG | - | chr4_4:47487827-47487846 | None:intergenic | 45.0% |
| CCAGAATGAAGAGTGACAGA+GGG | - | chr4_4:47487870-47487889 | None:intergenic | 45.0% | |
| !! | GGTTTCCTCTTGCTTTTGCA+GGG | - | chr4_4:47488120-47488139 | None:intergenic | 45.0% |
| !! | AGGTTTCCTCTTGCTTTTGC+AGG | - | chr4_4:47488121-47488140 | None:intergenic | 45.0% |
| ! | AATCTTGAGTTGCAGCTCCT+TGG | - | chr4_4:47488214-47488233 | None:intergenic | 45.0% |
| ! | CTGAGATGGACTTACCATGA+AGG | - | chr4_4:47488496-47488515 | None:intergenic | 45.0% |
| !! | TGCAGAAAAGTGCTGAACTG+CGG | + | chr4_4:47488537-47488556 | Msa0684160:three_prime_UTR | 45.0% |
| !!! | ATTAAAAAAGATTAATTTTT+CGG | + | chr4_4:47485887-47485906 | Msa0684160:intron | 5.0% |
| ATCAGCTCCAAATCCGTGAC+AGG | + | chr4_4:47484470-47484489 | Msa0684160:CDS | 50.0% | |
| AACCTCACCTGTCACGGATT+TGG | - | chr4_4:47484480-47484499 | None:intergenic | 50.0% | |
| TTTGGGAACCTCACCTGTCA+CGG | - | chr4_4:47484486-47484505 | None:intergenic | 50.0% | |
| TTTCTGTTACCCCCCCTCAA+AGG | + | chr4_4:47484549-47484568 | Msa0684160:intron | 50.0% | |
| ! | AATGTACCTCCTTTGAGGGG+GGG | - | chr4_4:47484561-47484580 | None:intergenic | 50.0% |
| ! | ACTAGTCTATGGGCTCGACT+CGG | - | chr4_4:47485010-47485029 | None:intergenic | 50.0% |
| TGTTATCCCTTTCCCGTTGG+TGG | + | chr4_4:47485128-47485147 | Msa0684160:intron | 50.0% | |
| ATGAAGCCACCAACGGGAAA+GGG | - | chr4_4:47485137-47485156 | None:intergenic | 50.0% | |
| AATGAAGCCACCAACGGGAA+AGG | - | chr4_4:47485138-47485157 | None:intergenic | 50.0% | |
| CGATGAATGAAGCCACCAAC+GGG | - | chr4_4:47485143-47485162 | None:intergenic | 50.0% | |
| CTGCCTATAGGCTGGATGAA+GGG | - | chr4_4:47485207-47485226 | None:intergenic | 50.0% | |
| AGAAAAGGCTGCCTATAGGC+TGG | - | chr4_4:47485215-47485234 | None:intergenic | 50.0% | |
| !! | GTTTGGATGGAGGGTTTTGG+AGG | + | chr4_4:47485282-47485301 | Msa0684160:intron | 50.0% |
| !!! | TTGGATGGAGGGTTTTGGAG+GGG | + | chr4_4:47485284-47485303 | Msa0684160:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4_4:47485485-47485504 | None:intergenic | 50.0% | |
| !! | GGTTTCTGAAGGGTTCTGGA+TGG | - | chr4_4:47485617-47485636 | None:intergenic | 50.0% |
| ! | AGGAGGTTTCTGAAGGGTTC+TGG | - | chr4_4:47485621-47485640 | None:intergenic | 50.0% |
| GGTTCTCCTGGTGAGCTTAA+GGG | - | chr4_4:47485654-47485673 | None:intergenic | 50.0% | |
| GTTATCCCTTTCCCCTTTGG+TGG | + | chr4_4:47486511-47486530 | Msa0684160:intron | 50.0% | |
| TGAAGCCACCAAAGGGGAAA+GGG | - | chr4_4:47486519-47486538 | None:intergenic | 50.0% | |
| ATGAAGCCACCAAAGGGGAA+AGG | - | chr4_4:47486520-47486539 | None:intergenic | 50.0% | |
| GCAGGTGAAAGCCGTAGTAT+AGG | - | chr4_4:47487232-47487251 | None:intergenic | 50.0% | |
| ATACTACGGCTTTCACCTGC+TGG | + | chr4_4:47487232-47487251 | Msa0684160:intron | 50.0% | |
| GGTAAAGGAATACCACCAGC+AGG | - | chr4_4:47487250-47487269 | None:intergenic | 50.0% | |
| GTGAACCTGCCAAAGGGTAA+AGG | - | chr4_4:47487265-47487284 | None:intergenic | 50.0% | |
| GAGACCGTTTGGGAGAACTA+AGG | - | chr4_4:47487631-47487650 | None:intergenic | 50.0% | |
| AGTTCTCCCAAACGGTCTCA+TGG | + | chr4_4:47487632-47487651 | Msa0684160:intron | 50.0% | |
| GTTCTCCCAAACGGTCTCAT+GGG | + | chr4_4:47487633-47487652 | Msa0684160:intron | 50.0% | |
| GAAACACCCATGAGACCGTT+TGG | - | chr4_4:47487642-47487661 | None:intergenic | 50.0% | |
| CCCTCTGTCACTCTTCATTC+TGG | + | chr4_4:47487867-47487886 | Msa0684160:intron | 50.0% | |
| GCCAGAATGAAGAGTGACAG+AGG | - | chr4_4:47487871-47487890 | None:intergenic | 50.0% | |
| !! | AGGTTTGCTGAGCTCAACCA+AGG | + | chr4_4:47488194-47488213 | Msa0684160:CDS | 50.0% |
| CTCCAAATCCGTGACAGGTG+AGG | + | chr4_4:47484475-47484494 | Msa0684160:intron | 55.0% | |
| CAGCCCTTCATCCAGCCTAT+AGG | + | chr4_4:47485201-47485220 | Msa0684160:intron | 55.0% | |
| GCTGCCTATAGGCTGGATGA+AGG | - | chr4_4:47485208-47485227 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr4_4:47485477-47485496 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr4_4:47485476-47485495 | Msa0684160:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr4_4:47485477-47485496 | Msa0684160:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4_4:47485483-47485502 | Msa0684160:intron | 55.0% | |
| ! | GTGGGATAAGGCTTTGGTGG+TGG | + | chr4_4:47485495-47485514 | Msa0684160:intron | 55.0% |
| GGGTTCTCCTGGTGAGCTTA+AGG | - | chr4_4:47485655-47485674 | None:intergenic | 55.0% | |
| CTCTGCACATCTTCGGACAC+AGG | - | chr4_4:47488141-47488160 | None:intergenic | 55.0% | |
| ! | CTGAAGCACTCGATGCGTGT+TGG | + | chr4_4:47488167-47488186 | Msa0684160:CDS | 55.0% |
| ! | ACTCGATGCGTGTTGGCATG+AGG | + | chr4_4:47488174-47488193 | Msa0684160:CDS | 55.0% |
| CTGTTACCCCCCCTCAAAGG+AGG | + | chr4_4:47484552-47484571 | Msa0684160:intron | 60.0% | |
| !!! | GATGGAGGGTTTTGGAGGGG+AGG | + | chr4_4:47485287-47485306 | Msa0684160:intron | 60.0% |
| CTACGGCTTTCACCTGCTGG+TGG | + | chr4_4:47487235-47487254 | Msa0684160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47484277 | 47488560 | 47484277 | ID=Msa0684160;Name=Msa0684160 |
| chr4_4 | mRNA | 47484277 | 47488560 | 47484277 | ID=Msa0684160-mRNA-1;Parent=Msa0684160;Name=Msa0684160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=120|1|1|1|1|1|2|325|93 |
| chr4_4 | exon | 47484277 | 47484491 | 47484277 | ID=Msa0684160-mRNA-1:exon:11683;Parent=Msa0684160-mRNA-1 |
| chr4_4 | exon | 47488049 | 47488560 | 47488049 | ID=Msa0684160-mRNA-1:exon:11684;Parent=Msa0684160-mRNA-1 |
| chr4_4 | five_prime_UTR | 47484277 | 47484396 | 47484277 | ID=Msa0684160-mRNA-1:five_prime_utr;Parent=Msa0684160-mRNA-1 |
| chr4_4 | CDS | 47484397 | 47484491 | 47484397 | ID=Msa0684160-mRNA-1:cds;Parent=Msa0684160-mRNA-1 |
| chr4_4 | CDS | 47488049 | 47488235 | 47488049 | ID=Msa0684160-mRNA-1:cds;Parent=Msa0684160-mRNA-1 |
| chr4_4 | three_prime_UTR | 47488236 | 47488560 | 47488236 | ID=Msa0684160-mRNA-1:three_prime_utr;Parent=Msa0684160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
