Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836660 | XP_003611749.1 | 99.419 | 172 | 1 | 0 | 1 | 172 | 1 | 172 | 1.78e-120 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836660 | G7K6Q0 | 99.419 | 172 | 1 | 0 | 1 | 172 | 1 | 172 | 8.49e-121 | 347 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0836660 | -0.808347 | 3.238401e-50 | -8.615850e-47 |
| Msa0013050 | Msa0836660 | 0.803369 | 3.603431e-49 | -8.615850e-47 |
| Msa0016670 | Msa0836660 | -0.824787 | 6.679669e-54 | -8.615850e-47 |
| Msa0027260 | Msa0836660 | -0.800149 | 1.649966e-48 | -8.615850e-47 |
| Msa0030380 | Msa0836660 | -0.832593 | 8.650030e-56 | -8.615850e-47 |
| Msa0032580 | Msa0836660 | -0.810712 | 1.005774e-50 | -8.615850e-47 |
| Msa0032840 | Msa0836660 | 0.840177 | 1.017097e-57 | -8.615850e-47 |
| Msa0040690 | Msa0836660 | -0.807196 | 5.688198e-50 | -8.615850e-47 |
| Msa0046750 | Msa0836660 | -0.802585 | 5.231596e-49 | -8.615850e-47 |
| Msa0073480 | Msa0836660 | -0.800943 | 1.137077e-48 | -8.615850e-47 |
| Msa0074320 | Msa0836660 | -0.808062 | 3.724736e-50 | -8.615850e-47 |
| Msa0085360 | Msa0836660 | 0.813587 | 2.374145e-51 | -8.615850e-47 |
| Msa0094120 | Msa0836660 | -0.803121 | 4.055219e-49 | -8.615850e-47 |
| Msa0094950 | Msa0836660 | -0.807376 | 5.208983e-50 | -8.615850e-47 |
| Msa0100740 | Msa0836660 | -0.801809 | 7.555695e-49 | -8.615850e-47 |
| Msa0110970 | Msa0836660 | -0.807764 | 4.310662e-50 | -8.615850e-47 |
| Msa0114540 | Msa0836660 | 0.807428 | 5.079911e-50 | -8.615850e-47 |
| Msa0616020 | Msa0836660 | -0.811628 | 6.367241e-51 | -8.615850e-47 |
| Msa0621120 | Msa0836660 | -0.832730 | 7.999818e-56 | -8.615850e-47 |
| Msa0623700 | Msa0836660 | -0.802236 | 6.173170e-49 | -8.615850e-47 |
| Msa0654760 | Msa0836660 | 0.849191 | 3.787615e-60 | -8.615850e-47 |
| Msa0677290 | Msa0836660 | -0.825830 | 3.785138e-54 | -8.615850e-47 |
| Msa0680240 | Msa0836660 | -0.808301 | 3.313295e-50 | -8.615850e-47 |
| Msa0692080 | Msa0836660 | -0.810375 | 1.189322e-50 | -8.615850e-47 |
| Msa0696620 | Msa0836660 | -0.801678 | 8.038162e-49 | -8.615850e-47 |
| Msa0703230 | Msa0836660 | -0.800484 | 1.410118e-48 | -8.615850e-47 |
| Msa0715010 | Msa0836660 | 0.928193 | 4.078163e-92 | -8.615850e-47 |
| Msa0738630 | Msa0836660 | 0.804170 | 2.456953e-49 | -8.615850e-47 |
| Msa0757010 | Msa0836660 | 0.907687 | 3.871351e-81 | -8.615850e-47 |
| Msa0783760 | Msa0836660 | 0.814147 | 1.786468e-51 | -8.615850e-47 |
| Msa0796530 | Msa0836660 | -0.810642 | 1.041615e-50 | -8.615850e-47 |
| Msa0797120 | Msa0836660 | -0.826321 | 2.893349e-54 | -8.615850e-47 |
| Msa0798000 | Msa0836660 | 0.941549 | 3.429579e-101 | -8.615850e-47 |
| Msa0813720 | Msa0836660 | -0.813898 | 2.027750e-51 | -8.615850e-47 |
| Msa0818980 | Msa0836660 | 0.815728 | 7.968912e-52 | -8.615850e-47 |
| Msa0819030 | Msa0836660 | 0.827531 | 1.485922e-54 | -8.615850e-47 |
| Msa0836660 | Msa0893480 | 0.809710 | 1.654070e-50 | -8.615850e-47 |
| Msa0836660 | Msa0902760 | -0.810520 | 1.106377e-50 | -8.615850e-47 |
| Msa0836660 | Msa0909000 | 0.815517 | 8.876592e-52 | -8.615850e-47 |
| Msa0836660 | Msa0968590 | -0.800059 | 1.721523e-48 | -8.615850e-47 |
| Msa0836660 | Msa1013400 | -0.819225 | 1.299032e-52 | -8.615850e-47 |
| Msa0836660 | Msa1019240 | -0.813268 | 2.789606e-51 | -8.615850e-47 |
| Msa0836660 | Msa1019260 | -0.824735 | 6.870077e-54 | -8.615850e-47 |
| Msa0836660 | Msa1040400 | -0.822915 | 1.834687e-53 | -8.615850e-47 |
| Msa0836660 | Msa1046470 | -0.809196 | 2.132603e-50 | -8.615850e-47 |
| Msa0836660 | Msa1054240 | -0.806935 | 6.460127e-50 | -8.615850e-47 |
| Msa0836660 | Msa1066490 | -0.813273 | 2.782424e-51 | -8.615850e-47 |
| Msa0836660 | Msa1081150 | -0.825799 | 3.848644e-54 | -8.615850e-47 |
| Msa0836660 | Msa1082700 | -0.838749 | 2.389898e-57 | -8.615850e-47 |
| Msa0836660 | Msa1093530 | -0.810321 | 1.221411e-50 | -8.615850e-47 |
| Msa0836660 | Msa1094420 | -0.819282 | 1.260780e-52 | -8.615850e-47 |
| Msa0836660 | Msa1104140 | -0.843883 | 1.065482e-58 | -8.615850e-47 |
| Msa0836660 | Msa1104210 | -0.817527 | 3.148223e-52 | -8.615850e-47 |
| Msa0836660 | Msa1106700 | -0.808549 | 2.933097e-50 | -8.615850e-47 |
| Msa0836660 | Msa1115770 | -0.804552 | 2.044848e-49 | -8.615850e-47 |
| Msa0836660 | Msa1126510 | -0.831429 | 1.677464e-55 | -8.615850e-47 |
| Msa0836660 | Msa1126770 | -0.814237 | 1.706843e-51 | -8.615850e-47 |
| Msa0836660 | Msa1134110 | -0.828099 | 1.085029e-54 | -8.615850e-47 |
| Msa0836660 | Msa1165870 | -0.809501 | 1.834243e-50 | -8.615850e-47 |
| Msa0836660 | Msa1166010 | -0.840331 | 9.273200e-58 | -8.615850e-47 |
| Msa0836660 | Msa1166860 | -0.838660 | 2.520326e-57 | -8.615850e-47 |
| Msa0836660 | Msa1166870 | -0.804032 | 2.624262e-49 | -8.615850e-47 |
| Msa0836660 | Msa1181850 | -0.805183 | 1.509300e-49 | -8.615850e-47 |
| Msa0836660 | Msa1188940 | -0.804704 | 1.901236e-49 | -8.615850e-47 |
| Msa0836660 | Msa1204250 | -0.804626 | 1.973342e-49 | -8.615850e-47 |
| Msa0836660 | Msa1207270 | -0.836932 | 7.002634e-57 | -8.615850e-47 |
| Msa0836660 | Msa1208890 | 0.811573 | 6.544848e-51 | -8.615850e-47 |
| Msa0836660 | Msa1218600 | -0.805078 | 1.588239e-49 | -8.615850e-47 |
| Msa0836660 | Msa1226620 | -0.805073 | 1.591421e-49 | -8.615850e-47 |
| Msa0836660 | Msa1237940 | -0.810894 | 9.185676e-51 | -8.615850e-47 |
| Msa0836660 | Msa1245940 | 0.805527 | 1.278572e-49 | -8.615850e-47 |
| Msa0836660 | Msa1252740 | -0.826211 | 3.072356e-54 | -8.615850e-47 |
| Msa0836660 | Msa1255040 | 0.823095 | 1.665267e-53 | -8.615850e-47 |
| Msa0836660 | Msa1259070 | 0.807505 | 4.892801e-50 | -8.615850e-47 |
| Msa0836660 | Msa1269580 | 0.808333 | 3.260456e-50 | -8.615850e-47 |
| Msa0836660 | Msa1275360 | -0.806017 | 1.008805e-49 | -8.615850e-47 |
| Msa0836660 | Msa1284520 | -0.806060 | 9.879816e-50 | -8.615850e-47 |
| Msa0836660 | Msa1292830 | -0.808709 | 2.711121e-50 | -8.615850e-47 |
| Msa0836660 | Msa1295490 | 0.842752 | 2.134554e-58 | -8.615850e-47 |
| Msa0836660 | Msa1333110 | -0.803767 | 2.979721e-49 | -8.615850e-47 |
| Msa0836660 | Msa1363330 | -0.824692 | 7.031593e-54 | -8.615850e-47 |
| Msa0836660 | Msa1375560 | -0.804168 | 2.458880e-49 | -8.615850e-47 |
| Msa0836660 | Msa1379760 | -0.828265 | 9.894172e-55 | -8.615850e-47 |
| Msa0836660 | Msa1386600 | -0.825676 | 4.116567e-54 | -8.615850e-47 |
| Msa0836660 | Msa1387420 | -0.829001 | 6.570783e-55 | -8.615850e-47 |
| Msa0836660 | Msa1397810 | -0.803166 | 3.969149e-49 | -8.615850e-47 |
| Msa0836660 | Msa1400610 | 0.809196 | 2.132309e-50 | -8.615850e-47 |
| Msa0836660 | Msa1403930 | 0.819526 | 1.108878e-52 | -8.615850e-47 |
| Msa0836660 | Msa1419800 | 0.816315 | 5.893291e-52 | -8.615850e-47 |
| Msa0836660 | Msa1429360 | 0.809690 | 1.670650e-50 | -8.615850e-47 |
| Msa0836660 | Msa1448690 | -0.813120 | 3.006160e-51 | -8.615850e-47 |
| Msa0836660 | Msa1453620 | -0.800108 | 1.682391e-48 | -8.615850e-47 |
| Msa0128860 | Msa0836660 | -0.825941 | 3.560850e-54 | -8.615850e-47 |
| Msa0138820 | Msa0836660 | 0.812487 | 4.136239e-51 | -8.615850e-47 |
| Msa0143430 | Msa0836660 | -0.801156 | 1.028555e-48 | -8.615850e-47 |
| Msa0167480 | Msa0836660 | -0.807215 | 5.636026e-50 | -8.615850e-47 |
| Msa0172970 | Msa0836660 | -0.814108 | 1.822238e-51 | -8.615850e-47 |
| Msa0173740 | Msa0836660 | -0.835056 | 2.095516e-56 | -8.615850e-47 |
| Msa0173820 | Msa0836660 | -0.836990 | 6.765617e-57 | -8.615850e-47 |
| Msa0173830 | Msa0836660 | -0.831250 | 1.857189e-55 | -8.615850e-47 |
| Msa0174730 | Msa0836660 | -0.827771 | 1.301753e-54 | -8.615850e-47 |
| Msa0182620 | Msa0836660 | 0.805211 | 1.489274e-49 | -8.615850e-47 |
| Msa0186890 | Msa0836660 | -0.805017 | 1.635087e-49 | -8.615850e-47 |
| Msa0187690 | Msa0836660 | -0.803042 | 4.210412e-49 | -8.615850e-47 |
| Msa0187930 | Msa0836660 | -0.814785 | 1.290672e-51 | -8.615850e-47 |
| Msa0193120 | Msa0836660 | -0.817584 | 3.056913e-52 | -8.615850e-47 |
| Msa0194540 | Msa0836660 | -0.818505 | 1.892475e-52 | -8.615850e-47 |
| Msa0199690 | Msa0836660 | -0.806485 | 8.038943e-50 | -8.615850e-47 |
| Msa0220720 | Msa0836660 | -0.812315 | 4.510860e-51 | -8.615850e-47 |
| Msa0225740 | Msa0836660 | -0.807159 | 5.792910e-50 | -8.615850e-47 |
| Msa0230550 | Msa0836660 | 0.841378 | 4.928678e-58 | -8.615850e-47 |
| Msa0231880 | Msa0836660 | -0.802638 | 5.101803e-49 | -8.615850e-47 |
| Msa0238070 | Msa0836660 | 0.827831 | 1.258915e-54 | -8.615850e-47 |
| Msa0369050 | Msa0836660 | -0.814350 | 1.611409e-51 | -8.615850e-47 |
| Msa0369220 | Msa0836660 | -0.800352 | 1.500416e-48 | -8.615850e-47 |
| Msa0376690 | Msa0836660 | -0.804387 | 2.213210e-49 | -8.615850e-47 |
| Msa0378080 | Msa0836660 | -0.801387 | 9.221353e-49 | -8.615850e-47 |
| Msa0385580 | Msa0836660 | -0.805485 | 1.304880e-49 | -8.615850e-47 |
| Msa0395960 | Msa0836660 | -0.825178 | 5.399725e-54 | -8.615850e-47 |
| Msa0402650 | Msa0836660 | -0.801341 | 9.426226e-49 | -8.615850e-47 |
| Msa0419820 | Msa0836660 | -0.822394 | 2.425737e-53 | -8.615850e-47 |
| Msa0425940 | Msa0836660 | -0.823874 | 1.095131e-53 | -8.615850e-47 |
| Msa0426160 | Msa0836660 | -0.818377 | 2.022998e-52 | -8.615850e-47 |
| Msa0429290 | Msa0836660 | -0.801001 | 1.106370e-48 | -8.615850e-47 |
| Msa0436280 | Msa0836660 | 0.810825 | 9.509349e-51 | -8.615850e-47 |
| Msa0437690 | Msa0836660 | 0.821098 | 4.836671e-53 | -8.615850e-47 |
| Msa0465790 | Msa0836660 | -0.806659 | 7.387555e-50 | -8.615850e-47 |
| Msa0471440 | Msa0836660 | -0.800633 | 1.314982e-48 | -8.615850e-47 |
| Msa0471590 | Msa0836660 | -0.820726 | 5.888988e-53 | -8.615850e-47 |
| Msa0242230 | Msa0836660 | -0.800771 | 1.232655e-48 | -8.615850e-47 |
| Msa0242410 | Msa0836660 | -0.806806 | 6.878264e-50 | -8.615850e-47 |
| Msa0244780 | Msa0836660 | -0.813056 | 3.105288e-51 | -8.615850e-47 |
| Msa0259860 | Msa0836660 | 0.818597 | 1.804350e-52 | -8.615850e-47 |
| Msa0260240 | Msa0836660 | -0.810236 | 1.274107e-50 | -8.615850e-47 |
| Msa0260280 | Msa0836660 | -0.807738 | 4.365986e-50 | -8.615850e-47 |
| Msa0262310 | Msa0836660 | -0.814874 | 1.233610e-51 | -8.615850e-47 |
| Msa0264570 | Msa0836660 | -0.841433 | 4.765853e-58 | -8.615850e-47 |
| Msa0268130 | Msa0836660 | -0.819465 | 1.144957e-52 | -8.615850e-47 |
| Msa0279790 | Msa0836660 | -0.809565 | 1.776815e-50 | -8.615850e-47 |
| Msa0294560 | Msa0836660 | 0.823786 | 1.148492e-53 | -8.615850e-47 |
| Msa0298990 | Msa0836660 | -0.817119 | 3.890331e-52 | -8.615850e-47 |
| Msa0299870 | Msa0836660 | -0.804621 | 1.978839e-49 | -8.615850e-47 |
| Msa0304260 | Msa0836660 | -0.807711 | 4.422847e-50 | -8.615850e-47 |
| Msa0304300 | Msa0836660 | -0.800740 | 1.250664e-48 | -8.615850e-47 |
| Msa0337240 | Msa0836660 | -0.816835 | 4.505673e-52 | -8.615850e-47 |
| Msa0508590 | Msa0836660 | -0.814206 | 1.733508e-51 | -8.615850e-47 |
| Msa0508630 | Msa0836660 | -0.816457 | 5.476602e-52 | -8.615850e-47 |
| Msa0508870 | Msa0836660 | -0.800673 | 1.290505e-48 | -8.615850e-47 |
| Msa0509390 | Msa0836660 | -0.813248 | 2.817580e-51 | -8.615850e-47 |
| Msa0509950 | Msa0836660 | 0.823393 | 1.419322e-53 | -8.615850e-47 |
| Msa0526540 | Msa0836660 | -0.823721 | 1.188980e-53 | -8.615850e-47 |
| Msa0541860 | Msa0836660 | -0.808743 | 2.665814e-50 | -8.615850e-47 |
| Msa0561540 | Msa0836660 | 0.835624 | 1.505291e-56 | -8.615850e-47 |
| Msa0576940 | Msa0836660 | -0.826020 | 3.411248e-54 | -8.615850e-47 |
| Msa0581070 | Msa0836660 | -0.801685 | 8.013330e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836660 | MtrunA17_Chr5g0402271 | 99.419 | 172 | 1 | 0 | 1 | 172 | 1 | 172 | 1.64e-124 | 347 |
| Msa0836660 | MtrunA17_Chr1g0190591 | 48.718 | 117 | 44 | 4 | 61 | 172 | 80 | 185 | 4.04e-24 | 93.2 |
| Msa0836660 | MtrunA17_Chr4g0044791 | 52.747 | 91 | 33 | 3 | 27 | 110 | 12 | 99 | 2.01e-23 | 90.1 |
| Msa0836660 | MtrunA17_Chr7g0274251 | 42.500 | 120 | 50 | 4 | 61 | 172 | 77 | 185 | 2.00e-19 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836660 | AT4G33985.1 | 52.381 | 147 | 54 | 4 | 29 | 171 | 14 | 148 | 1.91e-39 | 131 |
| Msa0836660 | AT3G50350.2 | 53.147 | 143 | 52 | 4 | 33 | 172 | 38 | 168 | 1.02e-37 | 127 |
| Msa0836660 | AT2G15590.2 | 46.358 | 151 | 58 | 6 | 29 | 172 | 11 | 145 | 7.54e-33 | 115 |
| Msa0836660 | AT3G50350.1 | 57.273 | 110 | 36 | 5 | 7 | 111 | 18 | 121 | 1.09e-28 | 105 |
| Msa0836660 | AT2G15590.1 | 55.056 | 89 | 28 | 4 | 29 | 110 | 11 | 94 | 6.79e-24 | 91.3 |
| Msa0836660 | AT1G08790.1 | 40.559 | 143 | 66 | 5 | 42 | 172 | 53 | 188 | 1.84e-19 | 81.3 |
| Msa0836660 | AT3G04700.1 | 39.456 | 147 | 69 | 3 | 42 | 172 | 48 | 190 | 2.48e-19 | 81.3 |
| Msa0836660 | AT2G31560.2 | 39.316 | 117 | 57 | 4 | 57 | 170 | 94 | 199 | 4.53e-17 | 75.5 |
| Msa0836660 | AT2G31560.1 | 39.316 | 117 | 57 | 4 | 57 | 170 | 94 | 199 | 4.53e-17 | 75.5 |
| Msa0836660 | AT2G31560.3 | 39.316 | 117 | 57 | 4 | 57 | 170 | 94 | 199 | 4.53e-17 | 75.5 |
| Msa0836660 | AT5G28690.1 | 38.255 | 149 | 68 | 5 | 42 | 172 | 49 | 191 | 5.71e-17 | 75.1 |
| Msa0836660 | AT5G28690.3 | 38.255 | 149 | 68 | 5 | 42 | 172 | 49 | 191 | 5.71e-17 | 75.1 |
| Msa0836660 | AT5G28690.2 | 38.255 | 149 | 68 | 5 | 42 | 172 | 49 | 191 | 5.71e-17 | 75.1 |
| Msa0836660 | AT1G05870.4 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.12 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.8 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.1 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.7 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.2 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.10 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.5 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.9 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.3 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.6 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT1G05870.11 | 38.983 | 118 | 57 | 4 | 57 | 170 | 80 | 186 | 7.63e-17 | 74.7 |
| Msa0836660 | AT2G15610.1 | 45.349 | 86 | 42 | 3 | 29 | 110 | 12 | 96 | 8.09e-17 | 73.6 |
| Msa0836660 | AT3G04710.3 | 34.595 | 185 | 100 | 4 | 1 | 169 | 8 | 187 | 1.22e-16 | 77.0 |
| Msa0836660 | AT2G43340.1 | 40.171 | 117 | 58 | 4 | 56 | 170 | 80 | 186 | 1.90e-16 | 73.6 |
Find 92 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAGTGCAAAGATTTA+AGG | 0.183003 | 5_4:+10239297 | None:intergenic |
| CTCAAAGCTTGCATTGAATT+AGG | 0.228374 | 5_4:-10238951 | Msa0836660:CDS |
| GGAAGACGCTATGGCTTATT+AGG | 0.235569 | 5_4:+10239223 | None:intergenic |
| GTAGTAACGGCGGCGGATTT+AGG | 0.271292 | 5_4:+10238816 | None:intergenic |
| GCTTGCATTGAATTAGGTTT+TGG | 0.295486 | 5_4:-10238945 | Msa0836660:CDS |
| AACCTTGTCTTCACCGTTTG+TGG | 0.303740 | 5_4:+10238444 | None:intergenic |
| CTTTAGGTACCAAAACAATC+TGG | 0.316908 | 5_4:+10238195 | None:intergenic |
| ATAATAACATCAACTACTTT+AGG | 0.332767 | 5_4:+10238179 | None:intergenic |
| TAGTAACGGCGGCGGATTTA+GGG | 0.354317 | 5_4:+10238817 | None:intergenic |
| TAACCAAACCCAGATTGTTT+TGG | 0.374396 | 5_4:-10238204 | Msa0836660:three_prime_UTR |
| ATGATTATGCATGATGATTC+TGG | 0.374745 | 5_4:-10238375 | Msa0836660:three_prime_UTR |
| AGCCCTCGCACCGCCATCTT+CGG | 0.378249 | 5_4:-10238741 | Msa0836660:CDS |
| ACACATGATTGTAACTTGTA+TGG | 0.382625 | 5_4:+10238282 | None:intergenic |
| CGACGATCAGTTTCAACTTC+GGG | 0.385163 | 5_4:+10238909 | None:intergenic |
| AGTGATTATTGATGATTAAC+CGG | 0.397578 | 5_4:-10238335 | Msa0836660:three_prime_UTR |
| GGCTCGTGGCCGGTTCTGTT+TGG | 0.413415 | 5_4:+10238234 | None:intergenic |
| GTACCAAAACAATCTGGGTT+TGG | 0.415014 | 5_4:+10238201 | None:intergenic |
| ATAAAAGTTATAATGATTCT+CGG | 0.416427 | 5_4:-10238842 | Msa0836660:CDS |
| AATATTACCGTTGCCGAAGA+TGG | 0.416533 | 5_4:+10238728 | None:intergenic |
| GGTGGAGATGGCGGCGCGTA+GGG | 0.419051 | 5_4:+10239146 | None:intergenic |
| CTACACAATGAATACCAAAA+AGG | 0.420369 | 5_4:+10237946 | None:intergenic |
| GGCTTCGTCGTAAAGGAAAC+TGG | 0.420518 | 5_4:-10239019 | Msa0836660:CDS |
| AGAAAGGAAGGTGGTGGAGA+TGG | 0.426640 | 5_4:+10239134 | None:intergenic |
| TCTGGGTTTGGTTAAACTAA+AGG | 0.430998 | 5_4:+10238213 | None:intergenic |
| AGAAGAGTGCAAAGATTTAA+GGG | 0.444563 | 5_4:+10239298 | None:intergenic |
| TGGTGGAGATGGCGGCGCGT+AGG | 0.463791 | 5_4:+10239145 | None:intergenic |
| TTGCCGAAGATGGCGGTGCG+AGG | 0.483550 | 5_4:+10238738 | None:intergenic |
| TGGAAGAGAAAGGAAGGTGG+TGG | 0.489175 | 5_4:+10239128 | None:intergenic |
| GCGTTGTTGTGCGGAGGTCG+AGG | 0.489529 | 5_4:+10239182 | None:intergenic |
| ATCTTTACCGTGACGAAGCG+TGG | 0.490402 | 5_4:-10239040 | Msa0836660:CDS |
| CGAGGGCTGCCACGAGGAGA+AGG | 0.497711 | 5_4:+10238756 | None:intergenic |
| TTTAGGTACCAAAACAATCT+GGG | 0.503636 | 5_4:+10238196 | None:intergenic |
| GAAGCGTGGCTTCGTCGTAA+AGG | 0.505096 | 5_4:-10239026 | Msa0836660:CDS |
| GTTAAATTAATAACCACGGT+TGG | 0.505727 | 5_4:+10238304 | None:intergenic |
| GTAAAGGAAACTGGAAGAAT+CGG | 0.510681 | 5_4:-10239010 | Msa0836660:CDS |
| GCCATCACGATCGGAGGCTG+CGG | 0.520742 | 5_4:+10238782 | None:intergenic |
| AGGGACCTCGCACGGTGCGT+TGG | 0.523223 | 5_4:+10239202 | None:intergenic |
| TGCCGAAGATGGCGGTGCGA+GGG | 0.523267 | 5_4:+10238739 | None:intergenic |
| GCTTCGTCACGGTAAAGATC+AGG | 0.527383 | 5_4:+10239044 | None:intergenic |
| CTCTCCTCAAGCAGCGATCG+TGG | 0.533172 | 5_4:-10239070 | Msa0836660:CDS |
| GGTGAGGTGGTAGATCAAGT+TGG | 0.533812 | 5_4:+10239329 | None:intergenic |
| ATTTCACTACCAAACAGAAC+CGG | 0.537637 | 5_4:-10238243 | Msa0836660:three_prime_UTR |
| TGGTGGACGGTGGAAGAGAA+AGG | 0.537926 | 5_4:+10239118 | None:intergenic |
| ATCACGATCGGAGGCTGCGG+AGG | 0.538111 | 5_4:+10238785 | None:intergenic |
| GCATGATAAAGTTCAAGAGC+AGG | 0.542994 | 5_4:+10238870 | None:intergenic |
| TGGTATTCATTGTGTAGGTG+TGG | 0.545424 | 5_4:-10237940 | Msa0836660:three_prime_UTR |
| CGGTGCGTTGGAAGACGCTA+TGG | 0.546409 | 5_4:+10239214 | None:intergenic |
| AAGGGTGTGGTGAGGTGAGG+TGG | 0.546681 | 5_4:+10239316 | None:intergenic |
| ACGACGATCAGTTTCAACTT+CGG | 0.557808 | 5_4:+10238908 | None:intergenic |
| AGAAGGAGTGCCATCACGAT+CGG | 0.561060 | 5_4:+10238773 | None:intergenic |
| GTCTTCCAACGCACCGTGCG+AGG | 0.563962 | 5_4:-10239207 | Msa0836660:five_prime_UTR |
| TCGGAGGCTGCGGAGGAAGA+CGG | 0.564577 | 5_4:+10238792 | None:intergenic |
| ATTGATATGTTACTTGCTGT+CGG | 0.564691 | 5_4:-10238158 | Msa0836660:three_prime_UTR |
| GGACGGTGGAAGAGAAAGGA+AGG | 0.564692 | 5_4:+10239122 | None:intergenic |
| AATTCTTGCCTTAGCAGTGG+TGG | 0.566176 | 5_4:+10239101 | None:intergenic |
| CGCACCGCCATCTTCGGCAA+CGG | 0.567388 | 5_4:-10238735 | Msa0836660:intron |
| TTAAACTAAAGGCTCGTGGC+CGG | 0.568803 | 5_4:+10238224 | None:intergenic |
| GGCACAGGTTGTTGCTTGTG+CGG | 0.568971 | 5_4:-10238412 | Msa0836660:CDS |
| AAGGTTGAGACAGTGGGCAC+AGG | 0.577432 | 5_4:-10238427 | Msa0836660:CDS |
| TGAAGATGATGATCCACAAA+CGG | 0.579168 | 5_4:-10238457 | Msa0836660:intron |
| CGTTGTTGTGCGGAGGTCGA+GGG | 0.580667 | 5_4:+10239183 | None:intergenic |
| ATGCATGATGATTCTGGTGA+TGG | 0.580916 | 5_4:-10238369 | Msa0836660:three_prime_UTR |
| TCCACCGTCCACCACTGCTA+AGG | 0.580926 | 5_4:-10239109 | Msa0836660:CDS |
| CGGTGGAAGAGAAAGGAAGG+TGG | 0.588878 | 5_4:+10239125 | None:intergenic |
| CACGATCGCTGCTTGAGGAG+AGG | 0.590516 | 5_4:+10239071 | None:intergenic |
| AAGGAAGGTGGTGGAGATGG+CGG | 0.597909 | 5_4:+10239137 | None:intergenic |
| ATCCACAAACGGTGAAGACA+AGG | 0.599536 | 5_4:-10238446 | Msa0836660:CDS |
| AGTGCAAAGATTTAAGGGTG+TGG | 0.601712 | 5_4:+10239303 | None:intergenic |
| CTTGCCTTAGCAGTGGTGGA+CGG | 0.601893 | 5_4:+10239105 | None:intergenic |
| TATGGTTAAATTAATAACCA+CGG | 0.602109 | 5_4:+10238300 | None:intergenic |
| GGAGGAAGACGGTGTAGTAA+CGG | 0.604938 | 5_4:+10238803 | None:intergenic |
| GGAGGTCGAGGGACCTCGCA+CGG | 0.605935 | 5_4:+10239194 | None:intergenic |
| ATTACCGTTGCCGAAGATGG+CGG | 0.608342 | 5_4:+10238731 | None:intergenic |
| TCCGCAGCCTCCGATCGTGA+TGG | 0.608934 | 5_4:-10238783 | Msa0836660:CDS |
| TTTAAGGGTGTGGTGAGGTG+AGG | 0.613102 | 5_4:+10239313 | None:intergenic |
| GACGAAGCCACGCTTCGTCA+CGG | 0.613832 | 5_4:+10239033 | None:intergenic |
| ATCGGAGCGTTGTTGTGCGG+AGG | 0.613915 | 5_4:+10239176 | None:intergenic |
| GCGACCACGATCGCTGCTTG+AGG | 0.614305 | 5_4:+10239066 | None:intergenic |
| GACATCGGAGCGTTGTTGTG+CGG | 0.617234 | 5_4:+10239173 | None:intergenic |
| GCCTTAGCAGTGGTGGACGG+TGG | 0.621956 | 5_4:+10239108 | None:intergenic |
| TGAAGACAAGGTTGAGACAG+TGG | 0.625033 | 5_4:-10238434 | Msa0836660:CDS |
| GAGAATTCTTGCCTTAGCAG+TGG | 0.625843 | 5_4:+10239098 | None:intergenic |
| AGACGGTGTAGTAACGGCGG+CGG | 0.627507 | 5_4:+10238809 | None:intergenic |
| TTGGTTAAACTAAAGGCTCG+TGG | 0.638119 | 5_4:+10238220 | None:intergenic |
| GGCGCGTAGGGATCAGACAT+CGG | 0.645725 | 5_4:+10239158 | None:intergenic |
| GATGGCACTCCTTCTCCTCG+TGG | 0.649473 | 5_4:-10238765 | Msa0836660:CDS |
| GAAGACAAGGTTGAGACAGT+GGG | 0.660668 | 5_4:-10238433 | Msa0836660:CDS |
| AGGAGTGCCATCACGATCGG+AGG | 0.666999 | 5_4:+10238776 | None:intergenic |
| TATTGTCTAAAATGTGACTG+TGG | 0.705865 | 5_4:-10238107 | Msa0836660:three_prime_UTR |
| GGAAGACGGTGTAGTAACGG+CGG | 0.724547 | 5_4:+10238806 | None:intergenic |
| GCGGTGCGAGGGCTGCCACG+AGG | 0.734065 | 5_4:+10238750 | None:intergenic |
| AAAGATTTAAGGGTGTGGTG+AGG | 0.752540 | 5_4:+10239308 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAGTTATAATGATTCT+CGG | - | chr5_4:10238405-10238424 | Msa0836660:CDS | 15.0% |
| !! | ATAAAAGTTATAATGATTCT+CGG | - | chr5_4:10238405-10238424 | Msa0836660:CDS | 15.0% |
| !!! | TTTTTGTTTTGTTTTGGATT+CGG | + | chr5_4:10237993-10238012 | None:intergenic | 20.0% |
| !!! | TTGGTTTTTTTGTTTTGTTT+TGG | + | chr5_4:10237999-10238018 | None:intergenic | 20.0% |
| !! | TCATATTGAATTAAGATCTA+TGG | - | chr5_4:10238705-10238724 | Msa0836660:intron | 20.0% |
| !! | TATGGTTAAATTAATAACCA+CGG | + | chr5_4:10238950-10238969 | None:intergenic | 20.0% |
| !! | ATAATAACATCAACTACTTT+AGG | + | chr5_4:10239071-10239090 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTGTTTTGGATT+CGG | + | chr5_4:10237993-10238012 | None:intergenic | 20.0% |
| !!! | TTGGTTTTTTTGTTTTGTTT+TGG | + | chr5_4:10237999-10238018 | None:intergenic | 20.0% |
| !! | TCATATTGAATTAAGATCTA+TGG | - | chr5_4:10238705-10238724 | Msa0836660:intron | 20.0% |
| !! | TATGGTTAAATTAATAACCA+CGG | + | chr5_4:10238950-10238969 | None:intergenic | 20.0% |
| !! | ATAATAACATCAACTACTTT+AGG | + | chr5_4:10239071-10239090 | None:intergenic | 20.0% |
| !!! | TATGGCTTATTAGGTTTTTT+TGG | + | chr5_4:10238018-10238037 | None:intergenic | 25.0% |
| !! | GTATTCTAAGAGTAATTAAG+AGG | + | chr5_4:10238612-10238631 | None:intergenic | 25.0% |
| !! | AGTGATTATTGATGATTAAC+CGG | - | chr5_4:10238912-10238931 | Msa0836660:CDS | 25.0% |
| ! | TTAAAAATGTTACTACTACG+TGG | - | chr5_4:10239259-10239278 | Msa0836660:five_prime_UTR | 25.0% |
| !!! | TATGGCTTATTAGGTTTTTT+TGG | + | chr5_4:10238018-10238037 | None:intergenic | 25.0% |
| !! | GTATTCTAAGAGTAATTAAG+AGG | + | chr5_4:10238612-10238631 | None:intergenic | 25.0% |
| !! | AGTGATTATTGATGATTAAC+CGG | - | chr5_4:10238912-10238931 | Msa0836660:CDS | 25.0% |
| ! | TTAAAAATGTTACTACTACG+TGG | - | chr5_4:10239259-10239278 | Msa0836660:five_prime_UTR | 25.0% |
| GACCAATAAAAAAGAGGTAA+GGG | - | chr5_4:10237892-10237911 | Msa0836660:three_prime_UTR | 30.0% | |
| !!! | AACCCTTACCTCTTTTTTAT+TGG | + | chr5_4:10237897-10237916 | None:intergenic | 30.0% |
| ! | AGAAGAGTGCAAAGATTTAA+GGG | + | chr5_4:10237952-10237971 | None:intergenic | 30.0% |
| ! | AAGAAGAGTGCAAAGATTTA+AGG | + | chr5_4:10237953-10237972 | None:intergenic | 30.0% |
| ATGATTATGCATGATGATTC+TGG | - | chr5_4:10238872-10238891 | Msa0836660:CDS | 30.0% | |
| GTTAAATTAATAACCACGGT+TGG | + | chr5_4:10238946-10238965 | None:intergenic | 30.0% | |
| ! | ACACATGATTGTAACTTGTA+TGG | + | chr5_4:10238968-10238987 | None:intergenic | 30.0% |
| TTTAGGTACCAAAACAATCT+GGG | + | chr5_4:10239054-10239073 | None:intergenic | 30.0% | |
| !! | ATTGATATGTTACTTGCTGT+CGG | - | chr5_4:10239089-10239108 | Msa0836660:CDS | 30.0% |
| ! | TATTGTCTAAAATGTGACTG+TGG | - | chr5_4:10239140-10239159 | Msa0836660:CDS | 30.0% |
| ! | TTTTGTGTCAGAAAGAAAGA+CGG | - | chr5_4:10239229-10239248 | Msa0836660:five_prime_UTR | 30.0% |
| CTACACAATGAATACCAAAA+AGG | + | chr5_4:10239304-10239323 | None:intergenic | 30.0% | |
| !! | CTTTTTGGTATTCATTGTGT+AGG | - | chr5_4:10239302-10239321 | Msa0836660:five_prime_UTR | 30.0% |
| GACCAATAAAAAAGAGGTAA+GGG | - | chr5_4:10237892-10237911 | Msa0836660:three_prime_UTR | 30.0% | |
| !!! | AACCCTTACCTCTTTTTTAT+TGG | + | chr5_4:10237897-10237916 | None:intergenic | 30.0% |
| ! | AGAAGAGTGCAAAGATTTAA+GGG | + | chr5_4:10237952-10237971 | None:intergenic | 30.0% |
| ! | AAGAAGAGTGCAAAGATTTA+AGG | + | chr5_4:10237953-10237972 | None:intergenic | 30.0% |
| ATGATTATGCATGATGATTC+TGG | - | chr5_4:10238872-10238891 | Msa0836660:CDS | 30.0% | |
| GTTAAATTAATAACCACGGT+TGG | + | chr5_4:10238946-10238965 | None:intergenic | 30.0% | |
| ! | ACACATGATTGTAACTTGTA+TGG | + | chr5_4:10238968-10238987 | None:intergenic | 30.0% |
| TTTAGGTACCAAAACAATCT+GGG | + | chr5_4:10239054-10239073 | None:intergenic | 30.0% | |
| !! | ATTGATATGTTACTTGCTGT+CGG | - | chr5_4:10239089-10239108 | Msa0836660:CDS | 30.0% |
| ! | TATTGTCTAAAATGTGACTG+TGG | - | chr5_4:10239140-10239159 | Msa0836660:CDS | 30.0% |
| ! | TTTTGTGTCAGAAAGAAAGA+CGG | - | chr5_4:10239229-10239248 | Msa0836660:five_prime_UTR | 30.0% |
| CTACACAATGAATACCAAAA+AGG | + | chr5_4:10239304-10239323 | None:intergenic | 30.0% | |
| !! | CTTTTTGGTATTCATTGTGT+AGG | - | chr5_4:10239302-10239321 | Msa0836660:five_prime_UTR | 30.0% |
| GGACCAATAAAAAAGAGGTA+AGG | - | chr5_4:10237891-10237910 | Msa0836660:three_prime_UTR | 35.0% | |
| !!! | TTGTTTTGTTTTGGATTCGG+CGG | + | chr5_4:10237990-10238009 | None:intergenic | 35.0% |
| GTAAAGGAAACTGGAAGAAT+CGG | - | chr5_4:10238237-10238256 | Msa0836660:three_prime_UTR | 35.0% | |
| CTCAAAGCTTGCATTGAATT+AGG | - | chr5_4:10238296-10238315 | Msa0836660:three_prime_UTR | 35.0% | |
| ! | GCTTGCATTGAATTAGGTTT+TGG | - | chr5_4:10238302-10238321 | Msa0836660:three_prime_UTR | 35.0% |
| TGAAGATGATGATCCACAAA+CGG | - | chr5_4:10238790-10238809 | Msa0836660:CDS | 35.0% | |
| ATTTCACTACCAAACAGAAC+CGG | - | chr5_4:10239004-10239023 | Msa0836660:CDS | 35.0% | |
| ! | TCTGGGTTTGGTTAAACTAA+AGG | + | chr5_4:10239037-10239056 | None:intergenic | 35.0% |
| ! | TAACCAAACCCAGATTGTTT+TGG | - | chr5_4:10239043-10239062 | Msa0836660:CDS | 35.0% |
| CTTTAGGTACCAAAACAATC+TGG | + | chr5_4:10239055-10239074 | None:intergenic | 35.0% | |
| GGACCAATAAAAAAGAGGTA+AGG | - | chr5_4:10237891-10237910 | Msa0836660:three_prime_UTR | 35.0% | |
| !!! | TTGTTTTGTTTTGGATTCGG+CGG | + | chr5_4:10237990-10238009 | None:intergenic | 35.0% |
| GTAAAGGAAACTGGAAGAAT+CGG | - | chr5_4:10238237-10238256 | Msa0836660:three_prime_UTR | 35.0% | |
| CTCAAAGCTTGCATTGAATT+AGG | - | chr5_4:10238296-10238315 | Msa0836660:three_prime_UTR | 35.0% | |
| ! | GCTTGCATTGAATTAGGTTT+TGG | - | chr5_4:10238302-10238321 | Msa0836660:three_prime_UTR | 35.0% |
| TGAAGATGATGATCCACAAA+CGG | - | chr5_4:10238790-10238809 | Msa0836660:CDS | 35.0% | |
| ATTTCACTACCAAACAGAAC+CGG | - | chr5_4:10239004-10239023 | Msa0836660:CDS | 35.0% | |
| ! | TCTGGGTTTGGTTAAACTAA+AGG | + | chr5_4:10239037-10239056 | None:intergenic | 35.0% |
| ! | TAACCAAACCCAGATTGTTT+TGG | - | chr5_4:10239043-10239062 | Msa0836660:CDS | 35.0% |
| CTTTAGGTACCAAAACAATC+TGG | + | chr5_4:10239055-10239074 | None:intergenic | 35.0% | |
| ! | AAAGATTTAAGGGTGTGGTG+AGG | + | chr5_4:10237942-10237961 | None:intergenic | 40.0% |
| AGTGCAAAGATTTAAGGGTG+TGG | + | chr5_4:10237947-10237966 | None:intergenic | 40.0% | |
| !!! | GATTCGGCGGTTTTTTGAAT+GGG | + | chr5_4:10237977-10237996 | None:intergenic | 40.0% |
| ACGACGATCAGTTTCAACTT+CGG | + | chr5_4:10238342-10238361 | None:intergenic | 40.0% | |
| GCATGATAAAGTTCAAGAGC+AGG | + | chr5_4:10238380-10238399 | None:intergenic | 40.0% | |
| AATATTACCGTTGCCGAAGA+TGG | + | chr5_4:10238522-10238541 | None:intergenic | 40.0% | |
| ATGCATGATGATTCTGGTGA+TGG | - | chr5_4:10238878-10238897 | Msa0836660:CDS | 40.0% | |
| TTGGTTAAACTAAAGGCTCG+TGG | + | chr5_4:10239030-10239049 | None:intergenic | 40.0% | |
| GTACCAAAACAATCTGGGTT+TGG | + | chr5_4:10239049-10239068 | None:intergenic | 40.0% | |
| AATACCAAAAAGGAGCAGCA+GGG | + | chr5_4:10239294-10239313 | None:intergenic | 40.0% | |
| TGGTATTCATTGTGTAGGTG+TGG | - | chr5_4:10239307-10239326 | Msa0836660:five_prime_UTR | 40.0% | |
| ! | AAAGATTTAAGGGTGTGGTG+AGG | + | chr5_4:10237942-10237961 | None:intergenic | 40.0% |
| AGTGCAAAGATTTAAGGGTG+TGG | + | chr5_4:10237947-10237966 | None:intergenic | 40.0% | |
| !!! | GATTCGGCGGTTTTTTGAAT+GGG | + | chr5_4:10237977-10237996 | None:intergenic | 40.0% |
| ACGACGATCAGTTTCAACTT+CGG | + | chr5_4:10238342-10238361 | None:intergenic | 40.0% | |
| GCATGATAAAGTTCAAGAGC+AGG | + | chr5_4:10238380-10238399 | None:intergenic | 40.0% | |
| AATATTACCGTTGCCGAAGA+TGG | + | chr5_4:10238522-10238541 | None:intergenic | 40.0% | |
| ATGCATGATGATTCTGGTGA+TGG | - | chr5_4:10238878-10238897 | Msa0836660:CDS | 40.0% | |
| TTGGTTAAACTAAAGGCTCG+TGG | + | chr5_4:10239030-10239049 | None:intergenic | 40.0% | |
| GTACCAAAACAATCTGGGTT+TGG | + | chr5_4:10239049-10239068 | None:intergenic | 40.0% | |
| AATACCAAAAAGGAGCAGCA+GGG | + | chr5_4:10239294-10239313 | None:intergenic | 40.0% | |
| TGGTATTCATTGTGTAGGTG+TGG | - | chr5_4:10239307-10239326 | Msa0836660:five_prime_UTR | 40.0% | |
| !!! | GGATTCGGCGGTTTTTTGAA+TGG | + | chr5_4:10237978-10237997 | None:intergenic | 45.0% |
| GGAAGACGCTATGGCTTATT+AGG | + | chr5_4:10238027-10238046 | None:intergenic | 45.0% | |
| AATTCTTGCCTTAGCAGTGG+TGG | + | chr5_4:10238149-10238168 | None:intergenic | 45.0% | |
| GAGAATTCTTGCCTTAGCAG+TGG | + | chr5_4:10238152-10238171 | None:intergenic | 45.0% | |
| CGACGATCAGTTTCAACTTC+GGG | + | chr5_4:10238341-10238360 | None:intergenic | 45.0% | |
| ATCCACAAACGGTGAAGACA+AGG | - | chr5_4:10238801-10238820 | Msa0836660:CDS | 45.0% | |
| AACCTTGTCTTCACCGTTTG+TGG | + | chr5_4:10238806-10238825 | None:intergenic | 45.0% | |
| TGAAGACAAGGTTGAGACAG+TGG | - | chr5_4:10238813-10238832 | Msa0836660:CDS | 45.0% | |
| GAAGACAAGGTTGAGACAGT+GGG | - | chr5_4:10238814-10238833 | Msa0836660:CDS | 45.0% | |
| ! | ACCACGGTTGGATTTTTCTC+CGG | + | chr5_4:10238934-10238953 | None:intergenic | 45.0% |
| TTAAACTAAAGGCTCGTGGC+CGG | + | chr5_4:10239026-10239045 | None:intergenic | 45.0% | |
| ATACCAAAAAGGAGCAGCAG+GGG | + | chr5_4:10239293-10239312 | None:intergenic | 45.0% | |
| GAATACCAAAAAGGAGCAGC+AGG | + | chr5_4:10239295-10239314 | None:intergenic | 45.0% | |
| !!! | GGATTCGGCGGTTTTTTGAA+TGG | + | chr5_4:10237978-10237997 | None:intergenic | 45.0% |
| GGAAGACGCTATGGCTTATT+AGG | + | chr5_4:10238027-10238046 | None:intergenic | 45.0% | |
| AATTCTTGCCTTAGCAGTGG+TGG | + | chr5_4:10238149-10238168 | None:intergenic | 45.0% | |
| GAGAATTCTTGCCTTAGCAG+TGG | + | chr5_4:10238152-10238171 | None:intergenic | 45.0% | |
| CGACGATCAGTTTCAACTTC+GGG | + | chr5_4:10238341-10238360 | None:intergenic | 45.0% | |
| ATCCACAAACGGTGAAGACA+AGG | - | chr5_4:10238801-10238820 | Msa0836660:CDS | 45.0% | |
| AACCTTGTCTTCACCGTTTG+TGG | + | chr5_4:10238806-10238825 | None:intergenic | 45.0% | |
| TGAAGACAAGGTTGAGACAG+TGG | - | chr5_4:10238813-10238832 | Msa0836660:CDS | 45.0% | |
| GAAGACAAGGTTGAGACAGT+GGG | - | chr5_4:10238814-10238833 | Msa0836660:CDS | 45.0% | |
| ! | ACCACGGTTGGATTTTTCTC+CGG | + | chr5_4:10238934-10238953 | None:intergenic | 45.0% |
| TTAAACTAAAGGCTCGTGGC+CGG | + | chr5_4:10239026-10239045 | None:intergenic | 45.0% | |
| ATACCAAAAAGGAGCAGCAG+GGG | + | chr5_4:10239293-10239312 | None:intergenic | 45.0% | |
| GAATACCAAAAAGGAGCAGC+AGG | + | chr5_4:10239295-10239314 | None:intergenic | 45.0% | |
| GGTGAGGTGGTAGATCAAGT+TGG | + | chr5_4:10237921-10237940 | None:intergenic | 50.0% | |
| ! | TTTAAGGGTGTGGTGAGGTG+AGG | + | chr5_4:10237937-10237956 | None:intergenic | 50.0% |
| !! | AGAAAGGAAGGTGGTGGAGA+TGG | + | chr5_4:10238116-10238135 | None:intergenic | 50.0% |
| TGGAAGAGAAAGGAAGGTGG+TGG | + | chr5_4:10238122-10238141 | None:intergenic | 50.0% | |
| GCTTCGTCACGGTAAAGATC+AGG | + | chr5_4:10238206-10238225 | None:intergenic | 50.0% | |
| ATCTTTACCGTGACGAAGCG+TGG | - | chr5_4:10238207-10238226 | Msa0836660:three_prime_UTR | 50.0% | |
| GGCTTCGTCGTAAAGGAAAC+TGG | - | chr5_4:10238228-10238247 | Msa0836660:three_prime_UTR | 50.0% | |
| ! | TAGTAACGGCGGCGGATTTA+GGG | + | chr5_4:10238433-10238452 | None:intergenic | 50.0% |
| GGAGGAAGACGGTGTAGTAA+CGG | + | chr5_4:10238447-10238466 | None:intergenic | 50.0% | |
| !! | AGAAGGAGTGCCATCACGAT+CGG | + | chr5_4:10238477-10238496 | None:intergenic | 50.0% |
| ATTACCGTTGCCGAAGATGG+CGG | + | chr5_4:10238519-10238538 | None:intergenic | 50.0% | |
| ACCGGAGAAAAATCCAACCG+TGG | - | chr5_4:10238930-10238949 | Msa0836660:CDS | 50.0% | |
| ! | AATCCCCTGCTGCTCCTTTT+TGG | - | chr5_4:10239287-10239306 | Msa0836660:five_prime_UTR | 50.0% |
| GGTGAGGTGGTAGATCAAGT+TGG | + | chr5_4:10237921-10237940 | None:intergenic | 50.0% | |
| ! | TTTAAGGGTGTGGTGAGGTG+AGG | + | chr5_4:10237937-10237956 | None:intergenic | 50.0% |
| !! | AGAAAGGAAGGTGGTGGAGA+TGG | + | chr5_4:10238116-10238135 | None:intergenic | 50.0% |
| TGGAAGAGAAAGGAAGGTGG+TGG | + | chr5_4:10238122-10238141 | None:intergenic | 50.0% | |
| GCTTCGTCACGGTAAAGATC+AGG | + | chr5_4:10238206-10238225 | None:intergenic | 50.0% | |
| ATCTTTACCGTGACGAAGCG+TGG | - | chr5_4:10238207-10238226 | Msa0836660:three_prime_UTR | 50.0% | |
| GGCTTCGTCGTAAAGGAAAC+TGG | - | chr5_4:10238228-10238247 | Msa0836660:three_prime_UTR | 50.0% | |
| ! | TAGTAACGGCGGCGGATTTA+GGG | + | chr5_4:10238433-10238452 | None:intergenic | 50.0% |
| GGAGGAAGACGGTGTAGTAA+CGG | + | chr5_4:10238447-10238466 | None:intergenic | 50.0% | |
| !! | AGAAGGAGTGCCATCACGAT+CGG | + | chr5_4:10238477-10238496 | None:intergenic | 50.0% |
| ATTACCGTTGCCGAAGATGG+CGG | + | chr5_4:10238519-10238538 | None:intergenic | 50.0% | |
| ACCGGAGAAAAATCCAACCG+TGG | - | chr5_4:10238930-10238949 | Msa0836660:CDS | 50.0% | |
| ! | AATCCCCTGCTGCTCCTTTT+TGG | - | chr5_4:10239287-10239306 | Msa0836660:five_prime_UTR | 50.0% |
| !! | GACATCGGAGCGTTGTTGTG+CGG | + | chr5_4:10238077-10238096 | None:intergenic | 55.0% |
| !! | AAGGAAGGTGGTGGAGATGG+CGG | + | chr5_4:10238113-10238132 | None:intergenic | 55.0% |
| CGGTGGAAGAGAAAGGAAGG+TGG | + | chr5_4:10238125-10238144 | None:intergenic | 55.0% | |
| GGACGGTGGAAGAGAAAGGA+AGG | + | chr5_4:10238128-10238147 | None:intergenic | 55.0% | |
| ! | TGGTGGACGGTGGAAGAGAA+AGG | + | chr5_4:10238132-10238151 | None:intergenic | 55.0% |
| ! | CTTGCCTTAGCAGTGGTGGA+CGG | + | chr5_4:10238145-10238164 | None:intergenic | 55.0% |
| GAAGCGTGGCTTCGTCGTAA+AGG | - | chr5_4:10238221-10238240 | Msa0836660:three_prime_UTR | 55.0% | |
| ! | GTAGTAACGGCGGCGGATTT+AGG | + | chr5_4:10238434-10238453 | None:intergenic | 55.0% |
| GGAAGACGGTGTAGTAACGG+CGG | + | chr5_4:10238444-10238463 | None:intergenic | 55.0% | |
| AAGGTTGAGACAGTGGGCAC+AGG | - | chr5_4:10238820-10238839 | Msa0836660:CDS | 55.0% | |
| ! | GGCACAGGTTGTTGCTTGTG+CGG | - | chr5_4:10238835-10238854 | Msa0836660:CDS | 55.0% |
| !! | GACATCGGAGCGTTGTTGTG+CGG | + | chr5_4:10238077-10238096 | None:intergenic | 55.0% |
| !! | AAGGAAGGTGGTGGAGATGG+CGG | + | chr5_4:10238113-10238132 | None:intergenic | 55.0% |
| CGGTGGAAGAGAAAGGAAGG+TGG | + | chr5_4:10238125-10238144 | None:intergenic | 55.0% | |
| GGACGGTGGAAGAGAAAGGA+AGG | + | chr5_4:10238128-10238147 | None:intergenic | 55.0% | |
| ! | TGGTGGACGGTGGAAGAGAA+AGG | + | chr5_4:10238132-10238151 | None:intergenic | 55.0% |
| ! | CTTGCCTTAGCAGTGGTGGA+CGG | + | chr5_4:10238145-10238164 | None:intergenic | 55.0% |
| GAAGCGTGGCTTCGTCGTAA+AGG | - | chr5_4:10238221-10238240 | Msa0836660:three_prime_UTR | 55.0% | |
| ! | GTAGTAACGGCGGCGGATTT+AGG | + | chr5_4:10238434-10238453 | None:intergenic | 55.0% |
| GGAAGACGGTGTAGTAACGG+CGG | + | chr5_4:10238444-10238463 | None:intergenic | 55.0% | |
| AAGGTTGAGACAGTGGGCAC+AGG | - | chr5_4:10238820-10238839 | Msa0836660:CDS | 55.0% | |
| ! | GGCACAGGTTGTTGCTTGTG+CGG | - | chr5_4:10238835-10238854 | Msa0836660:CDS | 55.0% |
| ! | AAGGGTGTGGTGAGGTGAGG+TGG | + | chr5_4:10237934-10237953 | None:intergenic | 60.0% |
| CGGTGCGTTGGAAGACGCTA+TGG | + | chr5_4:10238036-10238055 | None:intergenic | 60.0% | |
| CGTTGTTGTGCGGAGGTCGA+GGG | + | chr5_4:10238067-10238086 | None:intergenic | 60.0% | |
| !! | ATCGGAGCGTTGTTGTGCGG+AGG | + | chr5_4:10238074-10238093 | None:intergenic | 60.0% |
| GGCGCGTAGGGATCAGACAT+CGG | + | chr5_4:10238092-10238111 | None:intergenic | 60.0% | |
| TCCACCGTCCACCACTGCTA+AGG | - | chr5_4:10238138-10238157 | Msa0836660:three_prime_UTR | 60.0% | |
| CACGATCGCTGCTTGAGGAG+AGG | + | chr5_4:10238179-10238198 | None:intergenic | 60.0% | |
| CTCTCCTCAAGCAGCGATCG+TGG | - | chr5_4:10238177-10238196 | Msa0836660:three_prime_UTR | 60.0% | |
| GACGAAGCCACGCTTCGTCA+CGG | + | chr5_4:10238217-10238236 | None:intergenic | 60.0% | |
| AGACGGTGTAGTAACGGCGG+CGG | + | chr5_4:10238441-10238460 | None:intergenic | 60.0% | |
| !! | AGGAGTGCCATCACGATCGG+AGG | + | chr5_4:10238474-10238493 | None:intergenic | 60.0% |
| GATGGCACTCCTTCTCCTCG+TGG | - | chr5_4:10238482-10238501 | Msa0836660:intron | 60.0% | |
| ! | AAGGGTGTGGTGAGGTGAGG+TGG | + | chr5_4:10237934-10237953 | None:intergenic | 60.0% |
| CGGTGCGTTGGAAGACGCTA+TGG | + | chr5_4:10238036-10238055 | None:intergenic | 60.0% | |
| CGTTGTTGTGCGGAGGTCGA+GGG | + | chr5_4:10238067-10238086 | None:intergenic | 60.0% | |
| !! | ATCGGAGCGTTGTTGTGCGG+AGG | + | chr5_4:10238074-10238093 | None:intergenic | 60.0% |
| GGCGCGTAGGGATCAGACAT+CGG | + | chr5_4:10238092-10238111 | None:intergenic | 60.0% | |
| TCCACCGTCCACCACTGCTA+AGG | - | chr5_4:10238138-10238157 | Msa0836660:three_prime_UTR | 60.0% | |
| CACGATCGCTGCTTGAGGAG+AGG | + | chr5_4:10238179-10238198 | None:intergenic | 60.0% | |
| CTCTCCTCAAGCAGCGATCG+TGG | - | chr5_4:10238177-10238196 | Msa0836660:three_prime_UTR | 60.0% | |
| GACGAAGCCACGCTTCGTCA+CGG | + | chr5_4:10238217-10238236 | None:intergenic | 60.0% | |
| AGACGGTGTAGTAACGGCGG+CGG | + | chr5_4:10238441-10238460 | None:intergenic | 60.0% | |
| !! | AGGAGTGCCATCACGATCGG+AGG | + | chr5_4:10238474-10238493 | None:intergenic | 60.0% |
| GATGGCACTCCTTCTCCTCG+TGG | - | chr5_4:10238482-10238501 | Msa0836660:intron | 60.0% | |
| GTCTTCCAACGCACCGTGCG+AGG | - | chr5_4:10238040-10238059 | Msa0836660:three_prime_UTR | 65.0% | |
| GCGTTGTTGTGCGGAGGTCG+AGG | + | chr5_4:10238068-10238087 | None:intergenic | 65.0% | |
| !! | GCCTTAGCAGTGGTGGACGG+TGG | + | chr5_4:10238142-10238161 | None:intergenic | 65.0% |
| GCGACCACGATCGCTGCTTG+AGG | + | chr5_4:10238184-10238203 | None:intergenic | 65.0% | |
| TCGGAGGCTGCGGAGGAAGA+CGG | + | chr5_4:10238458-10238477 | None:intergenic | 65.0% | |
| ATCACGATCGGAGGCTGCGG+AGG | + | chr5_4:10238465-10238484 | None:intergenic | 65.0% | |
| TCCGCAGCCTCCGATCGTGA+TGG | - | chr5_4:10238464-10238483 | Msa0836660:intron | 65.0% | |
| GCCATCACGATCGGAGGCTG+CGG | + | chr5_4:10238468-10238487 | None:intergenic | 65.0% | |
| AGCCCTCGCACCGCCATCTT+CGG | - | chr5_4:10238506-10238525 | Msa0836660:intron | 65.0% | |
| ! | TGCCGAAGATGGCGGTGCGA+GGG | + | chr5_4:10238511-10238530 | None:intergenic | 65.0% |
| ! | TTGCCGAAGATGGCGGTGCG+AGG | + | chr5_4:10238512-10238531 | None:intergenic | 65.0% |
| CGCACCGCCATCTTCGGCAA+CGG | - | chr5_4:10238512-10238531 | Msa0836660:intron | 65.0% | |
| ! | GGCTCGTGGCCGGTTCTGTT+TGG | + | chr5_4:10239016-10239035 | None:intergenic | 65.0% |
| GTCTTCCAACGCACCGTGCG+AGG | - | chr5_4:10238040-10238059 | Msa0836660:three_prime_UTR | 65.0% | |
| GCGTTGTTGTGCGGAGGTCG+AGG | + | chr5_4:10238068-10238087 | None:intergenic | 65.0% | |
| !! | GCCTTAGCAGTGGTGGACGG+TGG | + | chr5_4:10238142-10238161 | None:intergenic | 65.0% |
| GCGACCACGATCGCTGCTTG+AGG | + | chr5_4:10238184-10238203 | None:intergenic | 65.0% | |
| TCGGAGGCTGCGGAGGAAGA+CGG | + | chr5_4:10238458-10238477 | None:intergenic | 65.0% | |
| ATCACGATCGGAGGCTGCGG+AGG | + | chr5_4:10238465-10238484 | None:intergenic | 65.0% | |
| TCCGCAGCCTCCGATCGTGA+TGG | - | chr5_4:10238464-10238483 | Msa0836660:intron | 65.0% | |
| GCCATCACGATCGGAGGCTG+CGG | + | chr5_4:10238468-10238487 | None:intergenic | 65.0% | |
| AGCCCTCGCACCGCCATCTT+CGG | - | chr5_4:10238506-10238525 | Msa0836660:intron | 65.0% | |
| ! | TGCCGAAGATGGCGGTGCGA+GGG | + | chr5_4:10238511-10238530 | None:intergenic | 65.0% |
| ! | TTGCCGAAGATGGCGGTGCG+AGG | + | chr5_4:10238512-10238531 | None:intergenic | 65.0% |
| CGCACCGCCATCTTCGGCAA+CGG | - | chr5_4:10238512-10238531 | Msa0836660:intron | 65.0% | |
| ! | GGCTCGTGGCCGGTTCTGTT+TGG | + | chr5_4:10239016-10239035 | None:intergenic | 65.0% |
| AGGGACCTCGCACGGTGCGT+TGG | + | chr5_4:10238048-10238067 | None:intergenic | 70.0% | |
| GGAGGTCGAGGGACCTCGCA+CGG | + | chr5_4:10238056-10238075 | None:intergenic | 70.0% | |
| ! | GGTGGAGATGGCGGCGCGTA+GGG | + | chr5_4:10238104-10238123 | None:intergenic | 70.0% |
| ! | TGGTGGAGATGGCGGCGCGT+AGG | + | chr5_4:10238105-10238124 | None:intergenic | 70.0% |
| CGAGGGCTGCCACGAGGAGA+AGG | + | chr5_4:10238494-10238513 | None:intergenic | 70.0% | |
| AGGGACCTCGCACGGTGCGT+TGG | + | chr5_4:10238048-10238067 | None:intergenic | 70.0% | |
| GGAGGTCGAGGGACCTCGCA+CGG | + | chr5_4:10238056-10238075 | None:intergenic | 70.0% | |
| ! | GGTGGAGATGGCGGCGCGTA+GGG | + | chr5_4:10238104-10238123 | None:intergenic | 70.0% |
| ! | TGGTGGAGATGGCGGCGCGT+AGG | + | chr5_4:10238105-10238124 | None:intergenic | 70.0% |
| CGAGGGCTGCCACGAGGAGA+AGG | + | chr5_4:10238494-10238513 | None:intergenic | 70.0% | |
| ! | GCGGTGCGAGGGCTGCCACG+AGG | + | chr5_4:10238500-10238519 | None:intergenic | 80.0% |
| ! | GCGGTGCGAGGGCTGCCACG+AGG | + | chr5_4:10238500-10238519 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 10237889 | 10239380 | 10237889 | ID=Msa0836660;Name=Msa0836660 |
| chr5_4 | mRNA | 10237889 | 10239380 | 10237889 | ID=Msa0836660-mRNA-1;Parent=Msa0836660;Name=Msa0836660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=203|1|1|1|1|1|2|509|172 |
| chr5_4 | exon | 10237889 | 10238474 | 10237889 | ID=Msa0836660-mRNA-1:exon:4507;Parent=Msa0836660-mRNA-1 |
| chr5_4 | exon | 10238736 | 10239380 | 10238736 | ID=Msa0836660-mRNA-1:exon:4506;Parent=Msa0836660-mRNA-1 |
| chr5_4 | five_prime_UTR | 10239178 | 10239380 | 10239178 | ID=Msa0836660-mRNA-1:five_prime_utr;Parent=Msa0836660-mRNA-1 |
| chr5_4 | CDS | 10238736 | 10239177 | 10238736 | ID=Msa0836660-mRNA-1:cds;Parent=Msa0836660-mRNA-1 |
| chr5_4 | CDS | 10238398 | 10238474 | 10238398 | ID=Msa0836660-mRNA-1:cds;Parent=Msa0836660-mRNA-1 |
| chr5_4 | three_prime_UTR | 10237889 | 10238397 | 10237889 | ID=Msa0836660-mRNA-1:three_prime_utr;Parent=Msa0836660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
