AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0068700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0068700 MtrunA17_Chr1g0172721 85.886 333 19 3 1 333 1 305 0.0 545
Msa0068700 MtrunA17_Chr2g0333891 92.683 82 6 0 240 321 28 109 9.56e-50 162
Msa0068700 MtrunA17_Chr2g0321531 40.391 307 126 13 39 333 2 263 2.41e-49 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0068700 AT3G10300.3 55.233 344 101 13 6 333 29 335 9.65e-103 305
Msa0068700 AT5G04170.1 56.627 332 76 10 6 333 87 354 5.95e-98 294
Msa0068700 AT3G10300.6 53.226 310 92 14 6 299 29 301 7.27e-81 251
Msa0068700 AT3G10300.4 51.974 304 93 13 6 293 29 295 2.96e-75 235
Msa0068700 AT3G10300.5 51.974 304 94 13 6 293 29 296 4.09e-75 234
Msa0068700 AT3G10300.2 51.974 304 93 13 6 293 29 295 5.92e-75 234
Msa0068700 AT3G10300.1 49.758 207 58 7 27 197 31 227 2.13e-41 144
Msa0068700 AT2G27480.1 39.216 204 93 6 131 331 49 224 1.47e-34 126

Find 148 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTTCCTTTGGTGGTTTC+TGG 0.083164 1_2:+35882443 None:intergenic
AAAACCTAGTTTCACAAAAT+TGG 0.171856 1_2:+35882132 None:intergenic
TGCTGTTTCTCCTGTGGTAT+TGG 0.230257 1_2:-35879092 Msa0068700:CDS
GCTAATTTGCTCTGTGGAAA+TGG 0.273221 1_2:-35882107 Msa0068700:CDS
CCGTAACTGGGAGGTTGATT+TGG 0.288039 1_2:+35882718 None:intergenic
GCCGTAGCCGTAACCGTAAC+TGG 0.323233 1_2:+35882705 None:intergenic
GCGCCGTAGGGTTGGGATGG+TGG 0.324780 1_2:+35882571 None:intergenic
TCCTTTGGTGGTTTCTGGTA+AGG 0.326406 1_2:+35882448 None:intergenic
TATCACATAATCAAACATTT+AGG 0.326700 1_2:+35877481 None:intergenic
GTACATGTGGAGCTGTAATT+TGG 0.334927 1_2:-35877757 Msa0068700:three_prime_UTR
GCGAGATGCGCTGTTGAGTT+TGG 0.343668 1_2:-35879119 Msa0068700:CDS
CGTAACTGGGAGGTTGATTT+GGG 0.358707 1_2:+35882719 None:intergenic
AGGAGGGGCGCCGTAGGGTT+GGG 0.362027 1_2:+35882564 None:intergenic
GCGGTGGTGCGCCGTAGGAT+TGG 0.373989 1_2:+35882536 None:intergenic
CGAGATGCGCTGTTGAGTTT+GGG 0.385394 1_2:-35879118 Msa0068700:CDS
GTCTCCAAGTTTGACAAAAC+TGG 0.393079 1_2:-35879061 Msa0068700:CDS
CTAATTTGCTCTGTGGAAAT+GGG 0.394820 1_2:-35882106 Msa0068700:CDS
CCTTTGGTGGTTTCTGGTAA+GGG 0.397757 1_2:+35882449 None:intergenic
AGGGGCGGCGTAAGGAGCGG+AGG 0.401526 1_2:+35882468 None:intergenic
TGCAAGCCCGTTCGCTTCAC+TGG 0.407358 1_2:-35882374 Msa0068700:CDS
GAGGAGGGGCGCCGTAGGGT+TGG 0.408524 1_2:+35882563 None:intergenic
GAGGTGGTGCGCCGTAGGAT+TGG 0.411161 1_2:+35882668 None:intergenic
AAATTCAAGGAGAAGGATAC+AGG 0.415061 1_2:-35877862 Msa0068700:CDS
CAGCACTATCCTAAGCTATC+AGG 0.415209 1_2:+35877782 None:intergenic
AGGTGGTGCGCCGTAGGATT+GGG 0.418487 1_2:+35882669 None:intergenic
GGATGGAGGAGGGGCGCCGT+AGG 0.428399 1_2:+35882558 None:intergenic
TTCTGGTAAGGGGCGGCGTA+AGG 0.429353 1_2:+35882460 None:intergenic
GGGCTTGCATACGCCGGCGG+TGG 0.429401 1_2:+35882388 None:intergenic
GACTCTCACTCCTCCGGTGG+CGG 0.432165 1_2:-35882424 Msa0068700:CDS
GGTTGGCCGTAGGAGGTTGG+AGG 0.432469 1_2:+35882490 None:intergenic
GAGTGAGAGTCTTCCTTTGG+TGG 0.439590 1_2:+35882436 None:intergenic
GAGGAGTGAGAGTCTTCCTT+TGG 0.443677 1_2:+35882433 None:intergenic
CGGTGGTGCGCCGTAGGATT+GGG 0.445505 1_2:+35882537 None:intergenic
TGAAAGCATGCAACGATGCT+TGG 0.448850 1_2:+35882322 None:intergenic
AACGATGCTTGGATCGGTGC+CGG 0.453966 1_2:+35882333 None:intergenic
AGTCAGCATAAACGCCTCAT+AGG 0.454448 1_2:+35877816 None:intergenic
TGTGGAGCTGTAATTTGGTT+TGG 0.455217 1_2:-35877752 Msa0068700:three_prime_UTR
CCGTAGGATTGGGATGGAGG+AGG 0.456352 1_2:+35882547 None:intergenic
ACTAGAAGAAAGTTCTCAAC+AGG 0.467356 1_2:+35877596 None:intergenic
TGGCCGTAGGAGGTTGGAGG+AGG 0.467647 1_2:+35882493 None:intergenic
TGCATACGCCGGCGGTGGGT+AGG 0.467667 1_2:+35882393 None:intergenic
GTGGATGTGAGCCGTGAGAT+TGG 0.469783 1_2:+35882641 None:intergenic
TCTCACTCCTCCGGTGGCGG+TGG 0.470796 1_2:-35882421 Msa0068700:CDS
TTGAGAGATTTGACAAGGAT+AGG 0.472164 1_2:-35879168 Msa0068700:intron
CGGCGTAAGGAGCGGAGGGT+TGG 0.478988 1_2:+35882473 None:intergenic
TGGCGCTGCCTACCCACCGC+CGG 0.479846 1_2:-35882401 Msa0068700:CDS
GATGGAGGAGGGGCGCCGTA+GGG 0.480496 1_2:+35882559 None:intergenic
GAGGGTTGGCCGTAGGAGGT+TGG 0.482160 1_2:+35882487 None:intergenic
CGTAGGATTGGGATGGAGGA+GGG 0.482175 1_2:+35882548 None:intergenic
CAACCTCCCAGTTACGGTTA+CGG 0.486274 1_2:-35882712 Msa0068700:CDS
CCTGCCATTCCTGATAGCTT+AGG 0.487744 1_2:-35877791 Msa0068700:exon
GGCTTGCATACGCCGGCGGT+GGG 0.489676 1_2:+35882389 None:intergenic
GCGCCGTAGGATTGGGATGG+AGG 0.490959 1_2:+35882544 None:intergenic
CTCTCCCCGTTCAACATGTC+CGG 0.491811 1_2:-35882745 None:intergenic
TCATTACTTCATTCAAGTAC+AGG 0.498762 1_2:+35877573 None:intergenic
AGCGGAGGGTTGGCCGTAGG+AGG 0.499264 1_2:+35882483 None:intergenic
GGGAGGTTGATTTGGGTAGC+CGG 0.501842 1_2:+35882726 None:intergenic
ACGGCACCAGTGAAGCGAAC+GGG 0.504114 1_2:+35882368 None:intergenic
AAATAGAGAAGTGAATTCCT+TGG 0.504432 1_2:+35879625 None:intergenic
ATAGGAAAATGTTGCAGAGC+CGG 0.504522 1_2:+35877834 None:intergenic
AATAGAGAAGTGAATTCCTT+GGG 0.505043 1_2:+35879626 None:intergenic
TGGATGTGAGCCGTGAGATT+GGG 0.514086 1_2:+35882642 None:intergenic
CTTTGGTGGTTTCTGGTAAG+GGG 0.515139 1_2:+35882450 None:intergenic
CCAAATCAACCTCCCAGTTA+CGG 0.522046 1_2:-35882718 Msa0068700:CDS
GGGACTAACTGACAAATTCA+AGG 0.522153 1_2:-35877875 Msa0068700:CDS
GGGGCGCCGTAGGGTTGGGA+TGG 0.523196 1_2:+35882568 None:intergenic
CCCAGTTACGGTTACGGCTA+CGG 0.528520 1_2:-35882706 Msa0068700:CDS
GAGAAGGATACAGGGTATAC+CGG 0.529864 1_2:-35877853 Msa0068700:CDS
CCGTGGGATTGAGATGGCGG+AGG 0.531055 1_2:+35882601 None:intergenic
GGAGGGGCACCGTATGATGA+TGG 0.531589 1_2:+35882619 None:intergenic
ACGATGCTTGGATCGGTGCC+GGG 0.533614 1_2:+35882334 None:intergenic
GATCTTCTTGACATTAGTGT+TGG 0.536581 1_2:+35882183 None:intergenic
GGGTTATGCTGTTTCTCCTG+TGG 0.541231 1_2:-35879098 Msa0068700:CDS
CGTTGCATGCTTTCAAGTGG+CGG 0.542086 1_2:-35882314 Msa0068700:CDS
GGGATGGTGGATGTGAGCCG+TGG 0.542212 1_2:+35882584 None:intergenic
CTGATAGCTTAGGATAGTGC+TGG 0.544912 1_2:-35877781 Msa0068700:exon
CCTAAGCTATCAGGAATGGC+AGG 0.545449 1_2:+35877791 None:intergenic
GTTTCGTAATAATGCTTAGT+CGG 0.545617 1_2:-35877544 Msa0068700:three_prime_UTR
CCGTAGGATTGGGACGGTGG+TGG 0.547430 1_2:+35882679 None:intergenic
GTAGGCAGCGCCACCGCCAC+CGG 0.548994 1_2:+35882411 None:intergenic
GTAGGATTGGGATGGAGGAG+GGG 0.552472 1_2:+35882549 None:intergenic
AAGGAAGACTCTCACTCCTC+CGG 0.552780 1_2:-35882430 Msa0068700:CDS
CCTAGTTTCACAAAATTGGA+AGG 0.554631 1_2:+35882136 None:intergenic
GGATGGAGGTGGTGCGCCGT+AGG 0.555278 1_2:+35882663 None:intergenic
GTAAGGGGCGGCGTAAGGAG+CGG 0.557755 1_2:+35882465 None:intergenic
GCACCTCCTCCAACCTCCTA+CGG 0.561200 1_2:-35882496 Msa0068700:CDS
TTTACAGTCTTCAGAGCTGG+AGG 0.563914 1_2:-35879604 Msa0068700:CDS
AACTGACAAATTCAAGGAGA+AGG 0.566916 1_2:-35877869 Msa0068700:CDS
AGATGGCGGTGGTGCGCCGT+AGG 0.569146 1_2:+35882531 None:intergenic
CTATCCTAAGCTATCAGGAA+TGG 0.571780 1_2:+35877787 None:intergenic
TGTGGTCGAATCAAGTACTT+TGG 0.572295 1_2:-35877718 Msa0068700:three_prime_UTR
GCGCCGTAGGATTGGGACGG+TGG 0.573651 1_2:+35882676 None:intergenic
CGTGGGATTGAGATGGCGGA+GGG 0.574541 1_2:+35882602 None:intergenic
AACACTAATGTCAAGAAGAT+CGG 0.580822 1_2:-35882181 Msa0068700:CDS
GGATGGTGGATGTGAGCCGT+GGG 0.582265 1_2:+35882585 None:intergenic
AACGGGCTTGCATACGCCGG+CGG 0.584711 1_2:+35882385 None:intergenic
AGGAGCGGAGGGTTGGCCGT+AGG 0.584854 1_2:+35882480 None:intergenic
CATCGTTGCATGCTTTCAAG+TGG 0.590722 1_2:-35882317 Msa0068700:CDS
GTGGCGGATCAAGATGGAAG+TGG 0.590863 1_2:-35882298 Msa0068700:CDS
GCGAACGGGCTTGCATACGC+CGG 0.591589 1_2:+35882382 None:intergenic
ACTTTGTAATGCAGGACCCA+AGG 0.592968 1_2:-35879642 Msa0068700:intron
CATATTAAAAGCTAAACGAT+AGG 0.595631 1_2:+35877671 None:intergenic
TGCTTGGATCGGTGCCGGGA+GGG 0.597915 1_2:+35882338 None:intergenic
CAGGTGTTGTCTTACTGTGA+AGG 0.600942 1_2:-35878489 Msa0068700:intron
CCTCCGCCATCTCAATCCCA+CGG 0.601681 1_2:-35882601 Msa0068700:CDS
CCACCACCGTCCCAATCCTA+CGG 0.602134 1_2:-35882679 Msa0068700:CDS
CCGTAGCCGTAACCGTAACT+GGG 0.603337 1_2:+35882706 None:intergenic
GGTGCGCCGTAGGATTGGGA+TGG 0.605624 1_2:+35882541 None:intergenic
CATCCACCATCCCAACCCTA+CGG 0.609859 1_2:-35882574 Msa0068700:CDS
CCGTAGGATTGAGATGGCGG+TGG 0.610007 1_2:+35882520 None:intergenic
TTACAGTCTTCAGAGCTGGA+GGG 0.610361 1_2:-35879603 Msa0068700:intron
GCATGCAACGATGCTTGGAT+CGG 0.610648 1_2:+35882327 None:intergenic
GGGGCGGCGTAAGGAGCGGA+GGG 0.612082 1_2:+35882469 None:intergenic
CCGTGAGATTGGGATGGAGG+TGG 0.615965 1_2:+35882652 None:intergenic
TTTCAAGTGGCGGATCAAGA+TGG 0.618083 1_2:-35882304 Msa0068700:CDS
CCTCCTCCATCCCAATCCTA+CGG 0.618440 1_2:-35882547 Msa0068700:CDS
CCACCGCCATCTCAATCCTA+CGG 0.620403 1_2:-35882520 Msa0068700:CDS
GGCAGCGCCACCGCCACCGG+AGG 0.620757 1_2:+35882414 None:intergenic
TGGTGGTTTCTGGTAAGGGG+CGG 0.622805 1_2:+35882453 None:intergenic
TCACATCCACCATCATCATA+CGG 0.623284 1_2:-35882628 Msa0068700:CDS
ACGAGCAAGTCCAATACCAC+AGG 0.626927 1_2:+35879082 None:intergenic
GGTTGGAGGAGGTGCACCGT+AGG 0.628236 1_2:+35882504 None:intergenic
GTGCCGTCGACATTCCCTCC+CGG 0.629672 1_2:-35882352 Msa0068700:CDS
AATATTTGAGAGATTTGACA+AGG 0.630255 1_2:-35879173 Msa0068700:intron
GCACCGTAGGATTGAGATGG+CGG 0.631406 1_2:+35882517 None:intergenic
GACGGCACCAGTGAAGCGAA+CGG 0.634185 1_2:+35882367 None:intergenic
GGTGCACCGTAGGATTGAGA+TGG 0.636423 1_2:+35882514 None:intergenic
GTGCCGGGAGGGAATGTCGA+CGG 0.638236 1_2:+35882349 None:intergenic
GAAGACTCTCACTCCTCCGG+TGG 0.638738 1_2:-35882427 Msa0068700:CDS
CGATGATAAAGAATTGCAGA+GGG 0.644489 1_2:-35882269 Msa0068700:CDS
CCACCTCCATCCCAATCTCA+CGG 0.645621 1_2:-35882652 Msa0068700:CDS
GGGGCACCGTATGATGATGG+TGG 0.647814 1_2:+35882622 None:intergenic
GGATAGTGCTGGTGTACATG+TGG 0.649736 1_2:-35877770 Msa0068700:three_prime_UTR
GAGCCGTGAGATTGGGATGG+AGG 0.649963 1_2:+35882649 None:intergenic
TGTGAGCCGTGGGATTGAGA+TGG 0.652224 1_2:+35882595 None:intergenic
CCCTTACCAGAAACCACCAA+AGG 0.652686 1_2:-35882449 Msa0068700:CDS
AGATTTGACAAGGATAGGAG+TGG 0.653339 1_2:-35879163 Msa0068700:CDS
TCCAAGTTTGACAAAACTGG+TGG 0.653417 1_2:-35879058 Msa0068700:CDS
ATGCTTGGATCGGTGCCGGG+AGG 0.656065 1_2:+35882337 None:intergenic
TGTGAGCCGTGAGATTGGGA+TGG 0.661955 1_2:+35882646 None:intergenic
AATTCAAGGAGAAGGATACA+GGG 0.664378 1_2:-35877861 Msa0068700:CDS
GGTGCGCCGTAGGATTGGGA+CGG 0.667811 1_2:+35882673 None:intergenic
GAGCCGTGGGATTGAGATGG+CGG 0.678050 1_2:+35882598 None:intergenic
TCGATGATAAAGAATTGCAG+AGG 0.679963 1_2:-35882270 Msa0068700:CDS
GTGGGATTGAGATGGCGGAG+GGG 0.683956 1_2:+35882603 None:intergenic
GGTTTGGCGATAGATGTGTG+TGG 0.726205 1_2:-35877736 Msa0068700:three_prime_UTR
CGTACTTTATCAACGTACGC+CGG 0.727753 1_2:+35882079 None:intergenic
TAGCCGTAACCGTAACTGGG+AGG 0.751687 1_2:+35882709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAAAAATTATATTA+CGG - chr1_2:35878459-35878478 Msa0068700:intron 0.0%
!! TAATACATTCTTTAATTAAT+TGG - chr1_2:35878110-35878129 Msa0068700:intron 10.0%
!! TAATTAATTGGATAATTAAA+TGG - chr1_2:35878122-35878141 Msa0068700:intron 10.0%
!!! ATAATTTTTTTATTATATGC+AGG + chr1_2:35878455-35878474 None:intergenic 10.0%
!! TTATATAATTATAAAGGATT+TGG - chr1_2:35881159-35881178 Msa0068700:intron 10.0%
!! AATATAACAAATTATTTAAG+GGG + chr1_2:35881409-35881428 None:intergenic 10.0%
!! CAATATAACAAATTATTTAA+GGG + chr1_2:35881410-35881429 None:intergenic 10.0%
!! TCAATATAACAAATTATTTA+AGG + chr1_2:35881411-35881430 None:intergenic 10.0%
!! TTAATTAAAGAATGTATTAG+TGG + chr1_2:35878109-35878128 None:intergenic 15.0%
!! CAACAAAAATAGTAAAATTT+GGG + chr1_2:35878391-35878410 None:intergenic 15.0%
!! ATAATTTATAGTTTATAAGC+TGG - chr1_2:35878512-35878531 Msa0068700:intron 15.0%
!!! AACTTTAAAAGAATCAATTT+TGG - chr1_2:35879310-35879329 Msa0068700:intron 15.0%
!! TTAAATCAACATTAATATGA+TGG - chr1_2:35880680-35880699 Msa0068700:intron 15.0%
!! CCAACAAAAATAGTAAAATT+TGG + chr1_2:35878392-35878411 None:intergenic 20.0%
!!! CCAAATTTTACTATTTTTGT+TGG - chr1_2:35878389-35878408 Msa0068700:intron 20.0%
!! TAAAATAACAGTTATCAAAC+AGG + chr1_2:35878552-35878571 None:intergenic 20.0%
!!! GGAATTGATTTGATTAAAAT+TGG + chr1_2:35880115-35880134 None:intergenic 20.0%
!! TTGAGAATTAAGATTAACTA+GGG + chr1_2:35880564-35880583 None:intergenic 20.0%
!! GATTATAGTGAAAATCAATA+TGG - chr1_2:35880644-35880663 Msa0068700:intron 20.0%
!!! TACAACTCTTTTTCTTTTAT+TGG - chr1_2:35881128-35881147 Msa0068700:intron 20.0%
!!! ACTTGAATTTTCAATGAAAA+TGG - chr1_2:35881268-35881287 Msa0068700:intron 20.0%
!! ATAAACATAAATCATAGTTC+TGG + chr1_2:35881545-35881564 None:intergenic 20.0%
!! TTACATCTTACTATTCTTAT+TGG - chr1_2:35881695-35881714 Msa0068700:intron 20.0%
!! GTTAAAAGAAAATAAGCAAA+AGG - chr1_2:35881727-35881746 Msa0068700:intron 20.0%
!! CTAAGTTAGAACAAAATTTA+TGG + chr1_2:35882146-35882165 None:intergenic 20.0%
!!! CATAAATTTTGTTCTAACTT+AGG - chr1_2:35882144-35882163 Msa0068700:CDS 20.0%
!! TATCACATAATCAAACATTT+AGG + chr1_2:35882637-35882656 None:intergenic 20.0%
! AAAACCTAGTTTCACAAAAT+TGG + chr1_2:35877986-35878005 None:intergenic 25.0%
! AATTATATTACGGCTATGTT+TGG - chr1_2:35878469-35878488 Msa0068700:intron 25.0%
! AAACTAATTCAAGTAGCTTA+TGG - chr1_2:35878618-35878637 Msa0068700:intron 25.0%
! TTCCAATTACATAGATTGTA+GGG + chr1_2:35878684-35878703 None:intergenic 25.0%
! TTTCCAATTACATAGATTGT+AGG + chr1_2:35878685-35878704 None:intergenic 25.0%
! TGTTTGATAAAATTAGTGGT+TGG + chr1_2:35878770-35878789 None:intergenic 25.0%
! GTAGTGTTTGATAAAATTAG+TGG + chr1_2:35878774-35878793 None:intergenic 25.0%
! ATTAGATTATAGCTCATAGT+GGG + chr1_2:35878817-35878836 None:intergenic 25.0%
! AATTAGATTATAGCTCATAG+TGG + chr1_2:35878818-35878837 None:intergenic 25.0%
! TTGTCTCTTAATGAACTTTA+TGG + chr1_2:35878897-35878916 None:intergenic 25.0%
! AATTGCGGTAAAAAGATTTA+AGG - chr1_2:35879266-35879285 Msa0068700:intron 25.0%
! ATTGCGGTAAAAAGATTTAA+GGG - chr1_2:35879267-35879286 Msa0068700:intron 25.0%
! TTAACGTGTTGTATGATAAA+TGG - chr1_2:35879335-35879354 Msa0068700:intron 25.0%
! ATGATAAATGGATACATGTT+TGG - chr1_2:35879347-35879366 Msa0068700:intron 25.0%
! TGATAAATGGATACATGTTT+GGG - chr1_2:35879348-35879367 Msa0068700:intron 25.0%
! ATATGTTAGAGTTATGTTGT+GGG + chr1_2:35879611-35879630 None:intergenic 25.0%
! TATATGTTAGAGTTATGTTG+TGG + chr1_2:35879612-35879631 None:intergenic 25.0%
! AAAGAAAAATGTTAGTATGG+TGG + chr1_2:35879635-35879654 None:intergenic 25.0%
! TGGAAAGAAAAATGTTAGTA+TGG + chr1_2:35879638-35879657 None:intergenic 25.0%
!!! TGTTAGAGTATTCTAAAACT+TGG - chr1_2:35879726-35879745 Msa0068700:intron 25.0%
! TTTCAAAAGTAAATCCTTAG+AGG + chr1_2:35879805-35879824 None:intergenic 25.0%
!! TACTAGATTGTTCTTTTAGT+AGG - chr1_2:35879839-35879858 Msa0068700:intron 25.0%
! TGCTAGAATCTATTATATAG+AGG - chr1_2:35879888-35879907 Msa0068700:intron 25.0%
! GCTAGAATCTATTATATAGA+GGG - chr1_2:35879889-35879908 Msa0068700:intron 25.0%
! TCAATGGCATTATACTAAAA+TGG + chr1_2:35879939-35879958 None:intergenic 25.0%
!!! ATTTTAGTATAATGCCATTG+AGG - chr1_2:35879938-35879957 Msa0068700:intron 25.0%
!!! TGCTGAACATTGTTTTATAA+AGG + chr1_2:35880136-35880155 None:intergenic 25.0%
! TGAGAATTAAGATTAACTAG+GGG + chr1_2:35880563-35880582 None:intergenic 25.0%
! GTTGAGAATTAAGATTAACT+AGG + chr1_2:35880565-35880584 None:intergenic 25.0%
! TGTGTGTTTGAATTCAAAAT+GGG - chr1_2:35880589-35880608 Msa0068700:intron 25.0%
! AATATTTGAGAGATTTGACA+AGG - chr1_2:35880942-35880961 Msa0068700:intron 25.0%
!! AATTATAAAGGATTTGGTCT+AGG - chr1_2:35881165-35881184 Msa0068700:intron 25.0%
!!! TAGTTCTTTTGTTGGTAAAT+TGG + chr1_2:35881363-35881382 None:intergenic 25.0%
! AACAAATTATTTAAGGGGTT+GGG + chr1_2:35881404-35881423 None:intergenic 25.0%
! TAACAAATTATTTAAGGGGT+TGG + chr1_2:35881405-35881424 None:intergenic 25.0%
! TCAACTTTCGTTATTTAAAC+TGG - chr1_2:35881483-35881502 Msa0068700:intron 25.0%
!!! AATCATAGTTCTGGTATATA+GGG + chr1_2:35881536-35881555 None:intergenic 25.0%
!!! AAATCATAGTTCTGGTATAT+AGG + chr1_2:35881537-35881556 None:intergenic 25.0%
!!! GTAATTTTAATTGCAGAAAC+TGG + chr1_2:35881679-35881698 None:intergenic 25.0%
! ATAAGCAAAAGGAAAGTTAT+AGG - chr1_2:35881738-35881757 Msa0068700:intron 25.0%
! TAAGCAAAAGGAAAGTTATA+GGG - chr1_2:35881739-35881758 Msa0068700:intron 25.0%
! ACTAACAGCAAACATTTAAA+AGG + chr1_2:35881847-35881866 None:intergenic 25.0%
! AGATAATGTTTCGTGAATTA+TGG - chr1_2:35881912-35881931 Msa0068700:intron 25.0%
!! AGATATTTTATCTTGCCAAA+AGG + chr1_2:35882197-35882216 None:intergenic 25.0%
!!! TTTAGTTTGTGTGTATTTCA+GGG - chr1_2:35882220-35882239 Msa0068700:CDS 25.0%
! CATATTAAAAGCTAAACGAT+AGG + chr1_2:35882447-35882466 None:intergenic 25.0%
!!! TAGGATTTGTTTTTACTGAT+AGG + chr1_2:35882482-35882501 None:intergenic 25.0%
AACACTAATGTCAAGAAGAT+CGG - chr1_2:35877934-35877953 Msa0068700:intron 30.0%
ATAGTTAATTGCATGCGATT+TGG - chr1_2:35878154-35878173 Msa0068700:intron 30.0%
! TTTACGGGTTATTCTTTGAT+AGG - chr1_2:35878239-35878258 Msa0068700:intron 30.0%
! TTATTTTCATGAGGTCATAG+TGG - chr1_2:35878586-35878605 Msa0068700:intron 30.0%
TCCAATTACATAGATTGTAG+GGG + chr1_2:35878683-35878702 None:intergenic 30.0%
!! CATCCATTGTAAACTAGTTT+TGG - chr1_2:35878845-35878864 Msa0068700:intron 30.0%
CTTTATGGTTCATTACAGAA+AGG + chr1_2:35878882-35878901 None:intergenic 30.0%
AAGAGACAATTAGACTCAAA+TGG - chr1_2:35878908-35878927 Msa0068700:intron 30.0%
AGAGACAATTAGACTCAAAT+GGG - chr1_2:35878909-35878928 Msa0068700:intron 30.0%
CTAACATACTATCAAATCAG+AGG - chr1_2:35879026-35879045 Msa0068700:CDS 30.0%
GGAATCATATTGACAAAAGA+TGG + chr1_2:35879167-35879186 None:intergenic 30.0%
GAGAGAGATTTAGACTAAAA+TGG + chr1_2:35879188-35879207 None:intergenic 30.0%
TTATAGATCTCAGTAAACAG+GGG + chr1_2:35879245-35879264 None:intergenic 30.0%
GTTATAGATCTCAGTAAACA+GGG + chr1_2:35879246-35879265 None:intergenic 30.0%
TGTTATAGATCTCAGTAAAC+AGG + chr1_2:35879247-35879266 None:intergenic 30.0%
ACTGAGATCTATAACAATTG+CGG - chr1_2:35879251-35879270 Msa0068700:intron 30.0%
!! TAAGGGATTGTTATTTCTCT+TGG - chr1_2:35879284-35879303 Msa0068700:intron 30.0%
!! AAGGGATTGTTATTTCTCTT+GGG - chr1_2:35879285-35879304 Msa0068700:intron 30.0%
TTTGGGAATTTAAGTGTGTT+TGG - chr1_2:35879365-35879384 Msa0068700:intron 30.0%
!! TACTAGCTTCAGAATTTTCA+CGG + chr1_2:35879434-35879453 None:intergenic 30.0%
GAGTTGAGTGATAATTGATA+AGG - chr1_2:35879561-35879580 Msa0068700:intron 30.0%
TTGAGTGATAATTGATAAGG+AGG - chr1_2:35879564-35879583 Msa0068700:intron 30.0%
ATAATTGATAAGGAGGTTGA+GGG - chr1_2:35879571-35879590 Msa0068700:intron 30.0%
TTCCAAAAAAGTTCCATACA+AGG - chr1_2:35879653-35879672 Msa0068700:intron 30.0%
!!! AACCTTGTATGGAACTTTTT+TGG + chr1_2:35879658-35879677 None:intergenic 30.0%
!! TAGAGGTTTTAACAAACACT+GGG + chr1_2:35879788-35879807 None:intergenic 30.0%
!! TTAGAGGTTTTAACAAACAC+TGG + chr1_2:35879789-35879808 None:intergenic 30.0%
! AGTGTTTGTTAAAACCTCTA+AGG - chr1_2:35879788-35879807 Msa0068700:intron 30.0%
AAAAGAACAATCTAGTAGCA+GGG + chr1_2:35879836-35879855 None:intergenic 30.0%
TAAAAGAACAATCTAGTAGC+AGG + chr1_2:35879837-35879856 None:intergenic 30.0%
TAATAATAACCACACCTCAA+TGG + chr1_2:35879955-35879974 None:intergenic 30.0%
TCTAATCAAATCAAGGTTGA+AGG + chr1_2:35879992-35880011 None:intergenic 30.0%
! AACCTTGATTTGATTAGAAG+TGG - chr1_2:35879994-35880013 Msa0068700:intron 30.0%
TACCACTTCTAATCAAATCA+AGG + chr1_2:35879999-35880018 None:intergenic 30.0%
! TTGAATGCTTTTAAGCTAAG+AGG + chr1_2:35880069-35880088 None:intergenic 30.0%
TAGGATATCTATAGCAGATA+TGG + chr1_2:35880263-35880282 None:intergenic 30.0%
! ATTTCTGCAAAAGTACAACT+TGG + chr1_2:35880295-35880314 None:intergenic 30.0%
! ATTCTTCACTGCTTGAATTT+TGG - chr1_2:35880450-35880469 Msa0068700:intron 30.0%
! AATTTTGGACTTTGTAATGC+AGG - chr1_2:35880465-35880484 Msa0068700:intron 30.0%
AATAGAGAAGTGAATTCCTT+GGG + chr1_2:35880492-35880511 None:intergenic 30.0%
AAATAGAGAAGTGAATTCCT+TGG + chr1_2:35880493-35880512 None:intergenic 30.0%
GTGTGTGTTTGAATTCAAAA+TGG - chr1_2:35880588-35880607 Msa0068700:intron 30.0%
TCACTATAATCATGCTTGAT+AGG + chr1_2:35880635-35880654 None:intergenic 30.0%
TGAAAATCAATATGGTGTGA+TGG - chr1_2:35880652-35880671 Msa0068700:intron 30.0%
TAGAAGAACACTGTTTCATA+AGG + chr1_2:35880899-35880918 None:intergenic 30.0%
TATGACAATTTCATCGAGTA+TGG - chr1_2:35881099-35881118 Msa0068700:intron 30.0%
AAAATAACATACTGTACCTC+TGG + chr1_2:35881202-35881221 None:intergenic 30.0%
AAGTTGTAACTATAAAGCCT+TGG - chr1_2:35881243-35881262 Msa0068700:intron 30.0%
ATTGAAAATTCAAGTGTCCA+AGG + chr1_2:35881263-35881282 None:intergenic 30.0%
!! TTCTTTTGTTGGTAAATTGG+AGG + chr1_2:35881360-35881379 None:intergenic 30.0%
! ATGTTTATCCTTGTCTGTTT+TGG - chr1_2:35881557-35881576 Msa0068700:intron 30.0%
! ATTTTACACCAAAACAGACA+AGG + chr1_2:35881568-35881587 None:intergenic 30.0%
!!! TTGTCTGTTTTGGTGTAAAA+TGG - chr1_2:35881567-35881586 Msa0068700:intron 30.0%
AAGCAAAAGGAAAGTTATAG+GGG - chr1_2:35881740-35881759 Msa0068700:intron 30.0%
AAACATGAACATATTCAACC+TGG - chr1_2:35882101-35882120 Msa0068700:CDS 30.0%
TCATACTAGGATATAAAACC+AGG + chr1_2:35882122-35882141 None:intergenic 30.0%
CAAAATTTATGGCTCATACT+AGG + chr1_2:35882135-35882154 None:intergenic 30.0%
!! CTTTAGTTTGTGTGTATTTC+AGG - chr1_2:35882219-35882238 Msa0068700:CDS 30.0%
! GGCTGAAAACATAGTATTTT+AGG + chr1_2:35882501-35882520 None:intergenic 30.0%
TCATTACTTCATTCAAGTAC+AGG + chr1_2:35882545-35882564 None:intergenic 30.0%
GTTTCGTAATAATGCTTAGT+CGG - chr1_2:35882571-35882590 Msa0068700:CDS 30.0%
TCGATGATAAAGAATTGCAG+AGG - chr1_2:35877845-35877864 Msa0068700:CDS 35.0%
CGATGATAAAGAATTGCAGA+GGG - chr1_2:35877846-35877865 Msa0068700:CDS 35.0%
GATCTTCTTGACATTAGTGT+TGG + chr1_2:35877935-35877954 None:intergenic 35.0%
CCTAGTTTCACAAAATTGGA+AGG + chr1_2:35877982-35878001 None:intergenic 35.0%
! CCTTCCAATTTTGTGAAACT+AGG - chr1_2:35877979-35877998 Msa0068700:intron 35.0%
!!! TTTTCTGCTAATTTGCTCTG+TGG - chr1_2:35878002-35878021 Msa0068700:intron 35.0%
!! CTAATTTGCTCTGTGGAAAT+GGG - chr1_2:35878009-35878028 Msa0068700:intron 35.0%
! TTTATTCCACGTGTGTGTTT+TGG - chr1_2:35878290-35878309 Msa0068700:intron 35.0%
! TTATTCCACGTGTGTGTTTT+GGG - chr1_2:35878291-35878310 Msa0068700:intron 35.0%
CCTCATGAAAATAAGATGCA+AGG + chr1_2:35878580-35878599 None:intergenic 35.0%
!!! CCTTGCATCTTATTTTCATG+AGG - chr1_2:35878577-35878596 Msa0068700:intron 35.0%
CATAGATTGTAGGGGTAAAA+TGG + chr1_2:35878675-35878694 None:intergenic 35.0%
ACCCCTACAATCTATGTAAT+TGG - chr1_2:35878679-35878698 Msa0068700:intron 35.0%
!!! CCATTGTAAACTAGTTTTGG+CGG - chr1_2:35878848-35878867 Msa0068700:intron 35.0%
AAGCTAACTTGATTGAGCTA+AGG - chr1_2:35878932-35878951 Msa0068700:intron 35.0%
AGCTAACTTGATTGAGCTAA+GGG - chr1_2:35878933-35878952 Msa0068700:intron 35.0%
TGATTGAGCTAAGGGATTAA+AGG - chr1_2:35878941-35878960 Msa0068700:intron 35.0%
ACATACTATCAAATCAGAGG+TGG - chr1_2:35879029-35879048 Msa0068700:CDS 35.0%
GTGTAAAGTGAGCAAATCAA+GGG + chr1_2:35879102-35879121 None:intergenic 35.0%
AGTGTAAAGTGAGCAAATCA+AGG + chr1_2:35879103-35879122 None:intergenic 35.0%
!! AGGGATTGTTATTTCTCTTG+GGG - chr1_2:35879286-35879305 Msa0068700:intron 35.0%
TGGTTGAGATTGAAGAGTTA+AGG - chr1_2:35879539-35879558 Msa0068700:intron 35.0%
GATAATTGATAAGGAGGTTG+AGG - chr1_2:35879570-35879589 Msa0068700:intron 35.0%
AAAGAACAATCTAGTAGCAG+GGG + chr1_2:35879835-35879854 None:intergenic 35.0%
TTGCTGAATGTGCATAAGTA+GGG + chr1_2:35880161-35880180 None:intergenic 35.0%
CAGATATGGTATCTGTAACA+AGG + chr1_2:35880249-35880268 None:intergenic 35.0%
TGAACAGCACGTTAGATTAA+GGG + chr1_2:35880395-35880414 None:intergenic 35.0%
ATGAACAGCACGTTAGATTA+AGG + chr1_2:35880396-35880415 None:intergenic 35.0%
! TATTTTACAGTCTTCAGAGC+TGG - chr1_2:35880508-35880527 Msa0068700:intron 35.0%
AGTTTGTCTAAGTGTGTGTT+TGG + chr1_2:35880869-35880888 None:intergenic 35.0%
ACAGTGTTCTTCTAACTAAC+TGG - chr1_2:35880905-35880924 Msa0068700:intron 35.0%
!! AACTAACTGGTTGTTGTTTC+AGG - chr1_2:35880918-35880937 Msa0068700:intron 35.0%
!! ACTAACTGGTTGTTGTTTCA+GGG - chr1_2:35880919-35880938 Msa0068700:intron 35.0%
TTGAGAGATTTGACAAGGAT+AGG - chr1_2:35880947-35880966 Msa0068700:intron 35.0%
ATTATTTAAGGGGTTGGGTT+GGG + chr1_2:35881399-35881418 None:intergenic 35.0%
AATTATTTAAGGGGTTGGGT+TGG + chr1_2:35881400-35881419 None:intergenic 35.0%
AATCAATTTCCTGTTACACG+TGG + chr1_2:35881974-35881993 None:intergenic 35.0%
! TTTTCACTTCCATTCTCCTA+TGG - chr1_2:35881992-35882011 Msa0068700:intron 35.0%
! AATCCACGATATGTTCCTTT+TGG - chr1_2:35882179-35882198 Msa0068700:CDS 35.0%
AACTGACAAATTCAAGGAGA+AGG - chr1_2:35882246-35882265 Msa0068700:CDS 35.0%
AAATTCAAGGAGAAGGATAC+AGG - chr1_2:35882253-35882272 Msa0068700:CDS 35.0%
AATTCAAGGAGAAGGATACA+GGG - chr1_2:35882254-35882273 Msa0068700:CDS 35.0%
ACTAGAAGAAAGTTCTCAAC+AGG + chr1_2:35882522-35882541 None:intergenic 35.0%
TCACATCCACCATCATCATA+CGG - chr1_2:35877487-35877506 Msa0068700:three_prime_UTR 40.0%
!! GCTAATTTGCTCTGTGGAAA+TGG - chr1_2:35878008-35878027 Msa0068700:intron 40.0%
!!! GGGGACTTTTTTGTCGTTTA+CGG - chr1_2:35878223-35878242 Msa0068700:intron 40.0%
!!! GGGACTTTTTTGTCGTTTAC+GGG - chr1_2:35878224-35878243 Msa0068700:intron 40.0%
!! TGATAGGATCCATTTTGACG+CGG - chr1_2:35878255-35878274 Msa0068700:intron 40.0%
! TATTCCACGTGTGTGTTTTG+GGG - chr1_2:35878292-35878311 Msa0068700:intron 40.0%
! CCGCCAAAACTAGTTTACAA+TGG + chr1_2:35878851-35878870 None:intergenic 40.0%
TTGAGCTAAGGGATTAAAGG+AGG - chr1_2:35878944-35878963 Msa0068700:intron 40.0%
CTAAGGGATTAAAGGAGGTA+AGG - chr1_2:35878949-35878968 Msa0068700:intron 40.0%
AAGGTCCATGGTTCGAATAT+TGG - chr1_2:35878976-35878995 Msa0068700:intron 40.0%
TAAAGTGAGCAAATCAAGGG+TGG + chr1_2:35879099-35879118 None:intergenic 40.0%
CAAAATCGCGTTGAAAACCA+CGG + chr1_2:35879475-35879494 None:intergenic 40.0%
ACCTTAGCGTATGTTTGGAA+TGG + chr1_2:35879511-35879530 None:intergenic 40.0%
AGTCAACCTTAGCGTATGTT+TGG + chr1_2:35879516-35879535 None:intergenic 40.0%
! ATACGCTAAGGTTGACTTTG+TGG - chr1_2:35879519-35879538 Msa0068700:intron 40.0%
TGTTAGAGTTATGTTGTGGG+CGG + chr1_2:35879608-35879627 None:intergenic 40.0%
TCCATACAAGGTTCGACTTT+AGG - chr1_2:35879665-35879684 Msa0068700:intron 40.0%
ACCTAAAGTCGAACCTTGTA+TGG + chr1_2:35879669-35879688 None:intergenic 40.0%
! CGACTTTAGGTTACAACAGT+TGG - chr1_2:35879678-35879697 Msa0068700:intron 40.0%
AGGGAATTTGAGTCTATACG+TGG - chr1_2:35879908-35879927 Msa0068700:intron 40.0%
AGTATAATGCCATTGAGGTG+TGG - chr1_2:35879943-35879962 Msa0068700:intron 40.0%
GTTGCTGAATGTGCATAAGT+AGG + chr1_2:35880162-35880181 None:intergenic 40.0%
TACAACTTGGACATCGAACT+AGG + chr1_2:35880282-35880301 None:intergenic 40.0%
CAAGCAGTGAAGAATGAAGA+TGG + chr1_2:35880445-35880464 None:intergenic 40.0%
CTAGGGGAAAACTTCGAAAA+AGG + chr1_2:35880547-35880566 None:intergenic 40.0%
! ATGATGGTAACTTTTGCACG+AGG - chr1_2:35880696-35880715 Msa0068700:intron 40.0%
! TGATGGTAACTTTTGCACGA+GGG - chr1_2:35880697-35880716 Msa0068700:intron 40.0%
GACAAGTTTGATGCAAAGCT+TGG + chr1_2:35880737-35880756 None:intergenic 40.0%
! TGCATCAAACTTGTCGATTG+AGG - chr1_2:35880742-35880761 Msa0068700:intron 40.0%
AGATTTGACAAGGATAGGAG+TGG - chr1_2:35880952-35880971 Msa0068700:intron 40.0%
GTCTCCAAGTTTGACAAAAC+TGG - chr1_2:35881054-35881073 Msa0068700:intron 40.0%
TCCAAGTTTGACAAAACTGG+TGG - chr1_2:35881057-35881076 Msa0068700:intron 40.0%
AGGAAAGTTATAGGGGTTTC+AGG - chr1_2:35881747-35881766 Msa0068700:intron 40.0%
GGAAAGTTATAGGGGTTTCA+GGG - chr1_2:35881748-35881767 Msa0068700:intron 40.0%
ATTCTCCTATGGTTTCACGA+GGG - chr1_2:35882003-35882022 Msa0068700:intron 40.0%
TTGCCAAAAGGAACATATCG+TGG + chr1_2:35882185-35882204 None:intergenic 40.0%
GGGACTAACTGACAAATTCA+AGG - chr1_2:35882240-35882259 Msa0068700:CDS 40.0%
ATAGGAAAATGTTGCAGAGC+CGG + chr1_2:35882284-35882303 None:intergenic 40.0%
! CTCTGCAACATTTTCCTATG+AGG - chr1_2:35882285-35882304 Msa0068700:CDS 40.0%
CTATCCTAAGCTATCAGGAA+TGG + chr1_2:35882331-35882350 None:intergenic 40.0%
GTACATGTGGAGCTGTAATT+TGG - chr1_2:35882358-35882377 Msa0068700:CDS 40.0%
TGTGGAGCTGTAATTTGGTT+TGG - chr1_2:35882363-35882382 Msa0068700:CDS 40.0%
TGTGGTCGAATCAAGTACTT+TGG - chr1_2:35882397-35882416 Msa0068700:CDS 40.0%
! CGTAACTGGGAGGTTGATTT+GGG + chr1_2:35877399-35877418 None:intergenic 45.0%
CCAAATCAACCTCCCAGTTA+CGG - chr1_2:35877397-35877416 Msa0068700:three_prime_UTR 45.0%
!! CTTTGGTGGTTTCTGGTAAG+GGG + chr1_2:35877668-35877687 None:intergenic 45.0%
!! CCTTTGGTGGTTTCTGGTAA+GGG + chr1_2:35877669-35877688 None:intergenic 45.0%
!! TCCTTTGGTGGTTTCTGGTA+AGG + chr1_2:35877670-35877689 None:intergenic 45.0%
! AGTCTTCCTTTGGTGGTTTC+TGG + chr1_2:35877675-35877694 None:intergenic 45.0%
! TGAAAGCATGCAACGATGCT+TGG + chr1_2:35877796-35877815 None:intergenic 45.0%
CATCGTTGCATGCTTTCAAG+TGG - chr1_2:35877798-35877817 Msa0068700:CDS 45.0%
!! TTTCAAGTGGCGGATCAAGA+TGG - chr1_2:35877811-35877830 Msa0068700:CDS 45.0%
!! CTCTGTGGAAATGGGTTTTC+CGG - chr1_2:35878017-35878036 Msa0068700:intron 45.0%
CGTACTTTATCAACGTACGC+CGG + chr1_2:35878039-35878058 None:intergenic 45.0%
! GCGCATGACAAAGGGTATAA+CGG + chr1_2:35878077-35878096 None:intergenic 45.0%
ACAAAGAAGCCGCGTCAAAA+TGG + chr1_2:35878267-35878286 None:intergenic 45.0%
!! ATTCCACGTGTGTGTTTTGG+GGG - chr1_2:35878293-35878312 Msa0068700:intron 45.0%
TTAAAGGAGGTAAGGAGCGA+AGG - chr1_2:35878957-35878976 Msa0068700:intron 45.0%
CCTAGCCAATATTCGAACCA+TGG + chr1_2:35878984-35879003 None:intergenic 45.0%
! CCATGGTTCGAATATTGGCT+AGG - chr1_2:35878981-35879000 Msa0068700:intron 45.0%
TTTCACGGAAACCGTGCATT+GGG + chr1_2:35879419-35879438 None:intergenic 45.0%
! TTTTCACGGAAACCGTGCAT+TGG + chr1_2:35879420-35879439 None:intergenic 45.0%
! GTTTGGAATGGCGTCAGATT+TGG + chr1_2:35879499-35879518 None:intergenic 45.0%
GCCATTCCAAACATACGCTA+AGG - chr1_2:35879507-35879526 Msa0068700:intron 45.0%
GCATACTACATCTCAAGCTC+TGG + chr1_2:35880205-35880224 None:intergenic 45.0%
! CTAACGTGCTGTTCATCGAT+TGG - chr1_2:35880400-35880419 Msa0068700:intron 45.0%
ACTTTGTAATGCAGGACCCA+AGG - chr1_2:35880473-35880492 Msa0068700:intron 45.0%
TTTACAGTCTTCAGAGCTGG+AGG - chr1_2:35880511-35880530 Msa0068700:intron 45.0%
TTACAGTCTTCAGAGCTGGA+GGG - chr1_2:35880512-35880531 Msa0068700:intron 45.0%
!! TGCTGTTTCTCCTGTGGTAT+TGG - chr1_2:35881023-35881042 Msa0068700:intron 45.0%
!! GCCACCAGTTTTGTCAAACT+TGG + chr1_2:35881061-35881080 None:intergenic 45.0%
!!! CTAGGTGTCTTGTTTTCCAG+AGG - chr1_2:35881183-35881202 Msa0068700:intron 45.0%
!! CTTCCTTTGTTTGCTGTTGC+AGG - chr1_2:35881607-35881626 Msa0068700:intron 45.0%
ACACCTGCAACAGCAAACAA+AGG + chr1_2:35881613-35881632 None:intergenic 45.0%
! CAGGTGTTGTCTTACTGTGA+AGG - chr1_2:35881626-35881645 Msa0068700:intron 45.0%
TTATAGGGGTTTCAGGGCTT+CGG - chr1_2:35881754-35881773 Msa0068700:intron 45.0%
CTCGTGAAACCATAGGAGAA+TGG + chr1_2:35882004-35882023 None:intergenic 45.0%
CATTCTCCTATGGTTTCACG+AGG - chr1_2:35882002-35882021 Msa0068700:intron 45.0%
GAGAAGGATACAGGGTATAC+CGG - chr1_2:35882262-35882281 Msa0068700:CDS 45.0%
AGTCAGCATAAACGCCTCAT+AGG + chr1_2:35882302-35882321 None:intergenic 45.0%
CAGCACTATCCTAAGCTATC+AGG + chr1_2:35882336-35882355 None:intergenic 45.0%
CTGATAGCTTAGGATAGTGC+TGG - chr1_2:35882334-35882353 Msa0068700:CDS 45.0%
!!! TTACTTTTATATAATTATAA+AGG - chr1_2:35881153-35881172 Msa0068700:intron 5.0%
! CCGTAACTGGGAGGTTGATT+TGG + chr1_2:35877400-35877419 None:intergenic 50.0%
CAACCTCCCAGTTACGGTTA+CGG - chr1_2:35877403-35877422 Msa0068700:three_prime_UTR 50.0%
TGGATGTGAGCCGTGAGATT+GGG + chr1_2:35877476-35877495 None:intergenic 50.0%
CCCTTACCAGAAACCACCAA+AGG - chr1_2:35877666-35877685 Msa0068700:three_prime_UTR 50.0%
GAGTGAGAGTCTTCCTTTGG+TGG + chr1_2:35877682-35877701 None:intergenic 50.0%
GAGGAGTGAGAGTCTTCCTT+TGG + chr1_2:35877685-35877704 None:intergenic 50.0%
AAGGAAGACTCTCACTCCTC+CGG - chr1_2:35877685-35877704 Msa0068700:three_prime_UTR 50.0%
GCATGCAACGATGCTTGGAT+CGG + chr1_2:35877791-35877810 None:intergenic 50.0%
! CGTTGCATGCTTTCAAGTGG+CGG - chr1_2:35877801-35877820 Msa0068700:CDS 50.0%
GTCATAGCGCGCATGACAAA+GGG + chr1_2:35878085-35878104 None:intergenic 50.0%
TGTCATAGCGCGCATGACAA+AGG + chr1_2:35878086-35878105 None:intergenic 50.0%
CGTGTAGTAAGTTGCGTACG+CGG - chr1_2:35878202-35878221 Msa0068700:intron 50.0%
GTGTAGTAAGTTGCGTACGC+GGG - chr1_2:35878203-35878222 Msa0068700:intron 50.0%
TGTAGTAAGTTGCGTACGCG+GGG - chr1_2:35878204-35878223 Msa0068700:intron 50.0%
!! TAAACAGGGGTGCTCGGAAA+AGG + chr1_2:35879232-35879251 None:intergenic 50.0%
!! TCTCAGTAAACAGGGGTGCT+CGG + chr1_2:35879238-35879257 None:intergenic 50.0%
TTCACGGAAACCGTGCATTG+GGG + chr1_2:35879418-35879437 None:intergenic 50.0%
CGAGATGCGCTGTTGAGTTT+GGG - chr1_2:35880997-35881016 Msa0068700:intron 50.0%
!! GGGTTATGCTGTTTCTCCTG+TGG - chr1_2:35881017-35881036 Msa0068700:intron 50.0%
ACGAGCAAGTCCAATACCAC+AGG + chr1_2:35881036-35881055 None:intergenic 50.0%
!! GGTTGGGTTGGGAGATCAAA+TGG + chr1_2:35881388-35881407 None:intergenic 50.0%
CATTAGCAGCCACGTGTAAC+AGG - chr1_2:35881962-35881981 Msa0068700:intron 50.0%
TCATGCCCTCGTGAAACCAT+AGG + chr1_2:35882011-35882030 None:intergenic 50.0%
! CACGAGGGCATGATGTTTGT+TGG - chr1_2:35882018-35882037 Msa0068700:intron 50.0%
CCTAAGCTATCAGGAATGGC+AGG + chr1_2:35882327-35882346 None:intergenic 50.0%
CCTGCCATTCCTGATAGCTT+AGG - chr1_2:35882324-35882343 Msa0068700:CDS 50.0%
!! GGATAGTGCTGGTGTACATG+TGG - chr1_2:35882345-35882364 Msa0068700:CDS 50.0%
GGTTTGGCGATAGATGTGTG+TGG - chr1_2:35882379-35882398 Msa0068700:CDS 50.0%
!! GGGAGGTTGATTTGGGTAGC+CGG + chr1_2:35877392-35877411 None:intergenic 55.0%
TAGCCGTAACCGTAACTGGG+AGG + chr1_2:35877409-35877428 None:intergenic 55.0%
CCGTAGCCGTAACCGTAACT+GGG + chr1_2:35877412-35877431 None:intergenic 55.0%
CCCAGTTACGGTTACGGCTA+CGG - chr1_2:35877409-35877428 Msa0068700:three_prime_UTR 55.0%
CCACCTCCATCCCAATCTCA+CGG - chr1_2:35877463-35877482 Msa0068700:three_prime_UTR 55.0%
TGTGAGCCGTGAGATTGGGA+TGG + chr1_2:35877472-35877491 None:intergenic 55.0%
GTGGATGTGAGCCGTGAGAT+TGG + chr1_2:35877477-35877496 None:intergenic 55.0%
TGTGAGCCGTGGGATTGAGA+TGG + chr1_2:35877523-35877542 None:intergenic 55.0%
CATCCACCATCCCAACCCTA+CGG - chr1_2:35877541-35877560 Msa0068700:three_prime_UTR 55.0%
GTAGGATTGGGATGGAGGAG+GGG + chr1_2:35877569-35877588 None:intergenic 55.0%
CGTAGGATTGGGATGGAGGA+GGG + chr1_2:35877570-35877589 None:intergenic 55.0%
CCTCCTCCATCCCAATCCTA+CGG - chr1_2:35877568-35877587 Msa0068700:three_prime_UTR 55.0%
CCACCGCCATCTCAATCCTA+CGG - chr1_2:35877595-35877614 Msa0068700:three_prime_UTR 55.0%
GCACCGTAGGATTGAGATGG+CGG + chr1_2:35877601-35877620 None:intergenic 55.0%
GGTGCACCGTAGGATTGAGA+TGG + chr1_2:35877604-35877623 None:intergenic 55.0%
!! TGGTGGTTTCTGGTAAGGGG+CGG + chr1_2:35877665-35877684 None:intergenic 55.0%
AACGATGCTTGGATCGGTGC+CGG + chr1_2:35877785-35877804 None:intergenic 55.0%
!! GTGGCGGATCAAGATGGAAG+TGG - chr1_2:35877817-35877836 Msa0068700:CDS 55.0%
AGACCCCCAAAACACACACG+TGG + chr1_2:35878299-35878318 None:intergenic 55.0%
AGGTAAGGAGCGAAGGTCCA+TGG - chr1_2:35878964-35878983 Msa0068700:intron 55.0%
! ATTGGGGCGCGGTATTGGAT+TGG + chr1_2:35879402-35879421 None:intergenic 55.0%
ATCAAGCTTCTGCGTTGCCG+TGG - chr1_2:35879455-35879474 Msa0068700:intron 55.0%
GCGAGATGCGCTGTTGAGTT+TGG - chr1_2:35880996-35881015 Msa0068700:intron 55.0%
GCCGTAGCCGTAACCGTAAC+TGG + chr1_2:35877413-35877432 None:intergenic 60.0%
CCACCACCGTCCCAATCCTA+CGG - chr1_2:35877436-35877455 Msa0068700:three_prime_UTR 60.0%
AGGTGGTGCGCCGTAGGATT+GGG + chr1_2:35877449-35877468 None:intergenic 60.0%
CCGTGAGATTGGGATGGAGG+TGG + chr1_2:35877466-35877485 None:intergenic 60.0%
GAGCCGTGAGATTGGGATGG+AGG + chr1_2:35877469-35877488 None:intergenic 60.0%
!! GGGGCACCGTATGATGATGG+TGG + chr1_2:35877496-35877515 None:intergenic 60.0%
!! GGAGGGGCACCGTATGATGA+TGG + chr1_2:35877499-35877518 None:intergenic 60.0%
!! GTGGGATTGAGATGGCGGAG+GGG + chr1_2:35877515-35877534 None:intergenic 60.0%
!! CGTGGGATTGAGATGGCGGA+GGG + chr1_2:35877516-35877535 None:intergenic 60.0%
CCTCCGCCATCTCAATCCCA+CGG - chr1_2:35877514-35877533 Msa0068700:three_prime_UTR 60.0%
GAGCCGTGGGATTGAGATGG+CGG + chr1_2:35877520-35877539 None:intergenic 60.0%
!! GGATGGTGGATGTGAGCCGT+GGG + chr1_2:35877533-35877552 None:intergenic 60.0%
CCGTAGGATTGGGATGGAGG+AGG + chr1_2:35877571-35877590 None:intergenic 60.0%
! CCGTAGGATTGAGATGGCGG+TGG + chr1_2:35877598-35877617 None:intergenic 60.0%
GCACCTCCTCCAACCTCCTA+CGG - chr1_2:35877619-35877638 Msa0068700:three_prime_UTR 60.0%
TTCTGGTAAGGGGCGGCGTA+AGG + chr1_2:35877658-35877677 None:intergenic 60.0%
GAAGACTCTCACTCCTCCGG+TGG - chr1_2:35877688-35877707 Msa0068700:three_prime_UTR 60.0%
TGCAAGCCCGTTCGCTTCAC+TGG - chr1_2:35877741-35877760 Msa0068700:three_prime_UTR 60.0%
ACGGCACCAGTGAAGCGAAC+GGG + chr1_2:35877750-35877769 None:intergenic 60.0%
GACGGCACCAGTGAAGCGAA+CGG + chr1_2:35877751-35877770 None:intergenic 60.0%
! ACGATGCTTGGATCGGTGCC+GGG + chr1_2:35877784-35877803 None:intergenic 60.0%
!! CGCGTTTTCGAGAGCAGAGC+AGG + chr1_2:35878184-35878203 None:intergenic 60.0%
!! AGGGGTGCTCGGAAAAGGCA+AGG + chr1_2:35879227-35879246 None:intergenic 60.0%
CAATACCGCGCCCCAATGCA+CGG - chr1_2:35879405-35879424 Msa0068700:intron 60.0%
CCGTAGGATTGGGACGGTGG+TGG + chr1_2:35877439-35877458 None:intergenic 65.0%
GGTGCGCCGTAGGATTGGGA+CGG + chr1_2:35877445-35877464 None:intergenic 65.0%
GAGGTGGTGCGCCGTAGGAT+TGG + chr1_2:35877450-35877469 None:intergenic 65.0%
! CCGTGGGATTGAGATGGCGG+AGG + chr1_2:35877517-35877536 None:intergenic 65.0%
!! GGGATGGTGGATGTGAGCCG+TGG + chr1_2:35877534-35877553 None:intergenic 65.0%
GCGCCGTAGGATTGGGATGG+AGG + chr1_2:35877574-35877593 None:intergenic 65.0%
GGTGCGCCGTAGGATTGGGA+TGG + chr1_2:35877445-35877464 None:intergenic 65.0%
CGGTGGTGCGCCGTAGGATT+GGG + chr1_2:35877581-35877600 None:intergenic 65.0%
! GGTTGGAGGAGGTGCACCGT+AGG + chr1_2:35877614-35877633 None:intergenic 65.0%
TGGCCGTAGGAGGTTGGAGG+AGG + chr1_2:35877625-35877644 None:intergenic 65.0%
! GGTTGGCCGTAGGAGGTTGG+AGG + chr1_2:35877628-35877647 None:intergenic 65.0%
!! GAGGGTTGGCCGTAGGAGGT+TGG + chr1_2:35877631-35877650 None:intergenic 65.0%
GTAAGGGGCGGCGTAAGGAG+CGG + chr1_2:35877653-35877672 None:intergenic 65.0%
GACTCTCACTCCTCCGGTGG+CGG - chr1_2:35877691-35877710 Msa0068700:three_prime_UTR 65.0%
! AACGGGCTTGCATACGCCGG+CGG + chr1_2:35877733-35877752 None:intergenic 65.0%
! GCGAACGGGCTTGCATACGC+CGG + chr1_2:35877736-35877755 None:intergenic 65.0%
GTGCCGTCGACATTCCCTCC+CGG - chr1_2:35877763-35877782 Msa0068700:three_prime_UTR 65.0%
GTGCCGGGAGGGAATGTCGA+CGG + chr1_2:35877769-35877788 None:intergenic 65.0%
!! TGCTTGGATCGGTGCCGGGA+GGG + chr1_2:35877780-35877799 None:intergenic 65.0%
!! ATGCTTGGATCGGTGCCGGG+AGG + chr1_2:35877781-35877800 None:intergenic 65.0%
CGTGCATTGGGGCGCGGTAT+TGG + chr1_2:35879407-35879426 None:intergenic 65.0%
GGAAACCGTGCATTGGGGCG+CGG + chr1_2:35879413-35879432 None:intergenic 65.0%
GCGCCGTAGGATTGGGACGG+TGG + chr1_2:35877442-35877461 None:intergenic 70.0%
GGATGGAGGTGGTGCGCCGT+AGG + chr1_2:35877455-35877474 None:intergenic 70.0%
GCGCCGTAGGGTTGGGATGG+TGG + chr1_2:35877547-35877566 None:intergenic 70.0%
!! AGGAGGGGCGCCGTAGGGTT+GGG + chr1_2:35877554-35877573 None:intergenic 70.0%
!! GATGGAGGAGGGGCGCCGTA+GGG + chr1_2:35877559-35877578 None:intergenic 70.0%
GCGGTGGTGCGCCGTAGGAT+TGG + chr1_2:35877582-35877601 None:intergenic 70.0%
! AGATGGCGGTGGTGCGCCGT+AGG + chr1_2:35877587-35877606 None:intergenic 70.0%
!! AGCGGAGGGTTGGCCGTAGG+AGG + chr1_2:35877635-35877654 None:intergenic 70.0%
!! AGGAGCGGAGGGTTGGCCGT+AGG + chr1_2:35877638-35877657 None:intergenic 70.0%
CGGCGTAAGGAGCGGAGGGT+TGG + chr1_2:35877645-35877664 None:intergenic 70.0%
! TCTCACTCCTCCGGTGGCGG+TGG - chr1_2:35877694-35877713 Msa0068700:three_prime_UTR 70.0%
TGCATACGCCGGCGGTGGGT+AGG + chr1_2:35877725-35877744 None:intergenic 70.0%
GGCTTGCATACGCCGGCGGT+GGG + chr1_2:35877729-35877748 None:intergenic 70.0%
!! GGGGCGCCGTAGGGTTGGGA+TGG + chr1_2:35877550-35877569 None:intergenic 75.0%
!! GAGGAGGGGCGCCGTAGGGT+TGG + chr1_2:35877555-35877574 None:intergenic 75.0%
!! GGATGGAGGAGGGGCGCCGT+AGG + chr1_2:35877560-35877579 None:intergenic 75.0%
GGGGCGGCGTAAGGAGCGGA+GGG + chr1_2:35877649-35877668 None:intergenic 75.0%
AGGGGCGGCGTAAGGAGCGG+AGG + chr1_2:35877650-35877669 None:intergenic 75.0%
GTAGGCAGCGCCACCGCCAC+CGG + chr1_2:35877707-35877726 None:intergenic 75.0%
TGGCGCTGCCTACCCACCGC+CGG - chr1_2:35877714-35877733 Msa0068700:three_prime_UTR 75.0%
GGGCTTGCATACGCCGGCGG+TGG + chr1_2:35877730-35877749 None:intergenic 75.0%
! GGCAGCGCCACCGCCACCGG+AGG + chr1_2:35877704-35877723 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 35877385 35882752 35877385 ID=Msa0068700;Name=Msa0068700
chr1_2 mRNA 35877385 35882752 35877385 ID=Msa0068700-mRNA-1;Parent=Msa0068700;Name=Msa0068700-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.6|1|1|1|5|407|333
chr1_2 exon 35877385 35877896 35877385 ID=Msa0068700-mRNA-1:exon:11413;Parent=Msa0068700-mRNA-1
chr1_2 exon 35878490 35878508 35878490 ID=Msa0068700-mRNA-1:exon:11412;Parent=Msa0068700-mRNA-1
chr1_2 exon 35879022 35879183 35879022 ID=Msa0068700-mRNA-1:exon:11411;Parent=Msa0068700-mRNA-1
chr1_2 exon 35879604 35879650 35879604 ID=Msa0068700-mRNA-1:exon:11410;Parent=Msa0068700-mRNA-1
chr1_2 exon 35882084 35882752 35882084 ID=Msa0068700-mRNA-1:exon:11409;Parent=Msa0068700-mRNA-1
chr1_2 CDS 35882084 35882752 35882084 ID=Msa0068700-mRNA-1:cds;Parent=Msa0068700-mRNA-1
chr1_2 CDS 35879604 35879650 35879604 ID=Msa0068700-mRNA-1:cds;Parent=Msa0068700-mRNA-1
chr1_2 CDS 35879022 35879183 35879022 ID=Msa0068700-mRNA-1:cds;Parent=Msa0068700-mRNA-1
chr1_2 CDS 35878490 35878508 35878490 ID=Msa0068700-mRNA-1:cds;Parent=Msa0068700-mRNA-1
chr1_2 CDS 35877792 35877896 35877792 ID=Msa0068700-mRNA-1:cds;Parent=Msa0068700-mRNA-1
chr1_2 three_prime_UTR 35877385 35877791 35877385 ID=Msa0068700-mRNA-1:three_prime_utr;Parent=Msa0068700-mRNA-1
Gene Sequence

>Msa0068700

ATGTCCGGCTACCCAAATCAACCTCCCAGTTACGGTTACGGCTACGGCACACCACCACCGTCCCAATCCTACGGCGCACCACCTCCATCCCAATCTCACGGCTCACATCCACCATCATCATACGGTGCCCCTCCGCCATCTCAATCCCACGGCTCACATCCACCATCCCAACCCTACGGCGCCCCTCCTCCATCCCAATCCTACGGCGCACCACCGCCATCTCAATCCTACGGTGCACCTCCTCCAACCTCCTACGGCCAACCCTCCGCTCCTTACGCCGCCCCTTACCAGAAACCACCAAAGGAAGACTCTCACTCCTCCGGTGGCGGTGGCGCTGCCTACCCACCGCCGGCGTATGCAAGCCCGTTCGCTTCACTGGTGCCGTCGACATTCCCTCCCGGCACCGATCCAAGCATCGTTGCATGCTTTCAAGTGGCGGATCAAGATGGAAGTGGTTTGATCGATGATAAAGAATTGCAGAGGGCTTTGTCTTCTTACAATCAGAGCTTCAGTTTGAGAACTGTTCATCTTCTCATGTATCACTTCACCAACACTAATGTCAAGAAGATCGGTACGTACTTCTTCTTCTTCATTCCTTCCAATTTTGTGAAACTAGGTTTTCTGCTAATTTGCTCTGTGGAAATGGGTTTTCCGGCGTACGTTGATAAAGACCCAAGGAATTCACTTCTCTATTTTACAGTCTTCAGAGCTGGAGGATTTGACAAGGATAGGAGTGGCAAAATCGATTCAAATGAGTTGCGAGATGCGCTGTTGAGTTTGGGTTATGCTGTTTCTCCTGTGGTATTGGACTTGCTCGTCTCCAAGTTTGACAAAACTGGTGGCAAAAACAAAGCTATCGAATATGACAATTTCATCGAGTGTTGTCTTACTGTGAAGGGACTAACTGACAAATTCAAGGAGAAGGATACAGGGTATACCGGCTCTGCAACATTTTCCTATGAGGCGTTTATGCTGACTGTCCTGCCATTCCTGATAGCTTAG
Protein sequence

>Msa0068700

MSGYPNQPPSYGYGYGTPPPSQSYGAPPPSQSHGSHPPSSYGAPPPSQSHGSHPPSQPYGAPPPSQSYGAPPPSQSYGAPPPTSYGQPSAPYAAPYQKPPKEDSHSSGGGGAAYPPPAYASPFASLVPSTFPPGTDPSIVACFQVADQDGSGLIDDKELQRALSSYNQSFSLRTVHLLMYHFTNTNVKKIGTYFFFFIPSNFVKLGFLLICSVEMGFPAYVDKDPRNSLLYFTVFRAGGFDKDRSGKIDSNELRDALLSLGYAVSPVVLDLLVSKFDKTGGKNKAIEYDNFIECCLTVKGLTDKFKEKDTGYTGSATFSYEAFMLTVLPFLIA*