Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180510 | AKN91693.1 | 98.165 | 327 | 6 | 0 | 1 | 327 | 1 | 327 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180510 | sp|Q8GY55|TIF4B_ARATH | 44.625 | 307 | 120 | 7 | 1 | 285 | 1 | 279 | 1.47e-67 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180510 | A0A186XM88 | 98.165 | 327 | 6 | 0 | 1 | 327 | 1 | 327 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0180510 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032470 | Msa0180510 | -0.830657 | 2.595505e-55 | -8.615850e-47 |
| Msa0044330 | Msa0180510 | -0.800855 | 1.185074e-48 | -8.615850e-47 |
| Msa0071250 | Msa0180510 | -0.809084 | 2.253541e-50 | -8.615850e-47 |
| Msa0086420 | Msa0180510 | -0.851593 | 8.021530e-61 | -8.615850e-47 |
| Msa0098340 | Msa0180510 | -0.800599 | 1.336489e-48 | -8.615850e-47 |
| Msa0104230 | Msa0180510 | -0.810308 | 1.229481e-50 | -8.615850e-47 |
| Msa0104240 | Msa0180510 | -0.806646 | 7.435517e-50 | -8.615850e-47 |
| Msa0104800 | Msa0180510 | -0.804033 | 2.622720e-49 | -8.615850e-47 |
| Msa0138020 | Msa0180510 | -0.811927 | 5.481402e-51 | -8.615850e-47 |
| Msa0175540 | Msa0180510 | -0.800688 | 1.281603e-48 | -8.615850e-47 |
| Msa0180510 | Msa0189520 | -0.800942 | 1.137540e-48 | -8.615850e-47 |
| Msa0180510 | Msa0233370 | -0.800993 | 1.110312e-48 | -8.615850e-47 |
| Msa0180510 | Msa0256330 | -0.812213 | 4.747430e-51 | -8.615850e-47 |
| Msa0180510 | Msa0278580 | -0.809953 | 1.466160e-50 | -8.615850e-47 |
| Msa0180510 | Msa0281480 | -0.802010 | 6.872022e-49 | -8.615850e-47 |
| Msa0180510 | Msa0284450 | -0.820767 | 5.764695e-53 | -8.615850e-47 |
| Msa0180510 | Msa0295330 | -0.818328 | 2.075676e-52 | -8.615850e-47 |
| Msa0180510 | Msa0296980 | 0.804982 | 1.663167e-49 | -8.615850e-47 |
| Msa0180510 | Msa0305410 | -0.813311 | 2.729850e-51 | -8.615850e-47 |
| Msa0180510 | Msa0317960 | -0.802484 | 5.487887e-49 | -8.615850e-47 |
| Msa0180510 | Msa0320670 | -0.800641 | 1.309962e-48 | -8.615850e-47 |
| Msa0180510 | Msa0337590 | -0.803930 | 2.755269e-49 | -8.615850e-47 |
| Msa0180510 | Msa0389210 | -0.800695 | 1.277591e-48 | -8.615850e-47 |
| Msa0180510 | Msa0389610 | 0.802273 | 6.067227e-49 | -8.615850e-47 |
| Msa0180510 | Msa0403770 | -0.804687 | 1.916491e-49 | -8.615850e-47 |
| Msa0180510 | Msa0485490 | -0.805842 | 1.098042e-49 | -8.615850e-47 |
| Msa0180510 | Msa0521270 | -0.822310 | 2.537262e-53 | -8.615850e-47 |
| Msa0180510 | Msa0527740 | -0.809694 | 1.667529e-50 | -8.615850e-47 |
| Msa0180510 | Msa0528610 | 0.805745 | 1.150781e-49 | -8.615850e-47 |
| Msa0180510 | Msa0544840 | -0.808775 | 2.623572e-50 | -8.615850e-47 |
| Msa0180510 | Msa0566350 | -0.800704 | 1.272311e-48 | -8.615850e-47 |
| Msa0180510 | Msa0566750 | -0.805725 | 1.162049e-49 | -8.615850e-47 |
| Msa0180510 | Msa0600080 | -0.800035 | 1.740378e-48 | -8.615850e-47 |
| Msa0180510 | Msa0625700 | -0.807959 | 3.916980e-50 | -8.615850e-47 |
| Msa0180510 | Msa0654620 | -0.806696 | 7.256494e-50 | -8.615850e-47 |
| Msa0180510 | Msa0689780 | -0.805579 | 1.247182e-49 | -8.615850e-47 |
| Msa0180510 | Msa0705990 | -0.813572 | 2.391769e-51 | -8.615850e-47 |
| Msa0180510 | Msa0711100 | -0.806850 | 6.733751e-50 | -8.615850e-47 |
| Msa0180510 | Msa0742150 | -0.806221 | 9.141266e-50 | -8.615850e-47 |
| Msa0180510 | Msa0748730 | -0.802867 | 4.575166e-49 | -8.615850e-47 |
| Msa0180510 | Msa0750850 | -0.808256 | 3.385762e-50 | -8.615850e-47 |
| Msa0180510 | Msa0788540 | -0.808935 | 2.424839e-50 | -8.615850e-47 |
| Msa0180510 | Msa0793380 | -0.802466 | 5.536128e-49 | -8.615850e-47 |
| Msa0180510 | Msa0801730 | -0.805357 | 1.388368e-49 | -8.615850e-47 |
| Msa0180510 | Msa0820850 | -0.820106 | 8.170980e-53 | -8.615850e-47 |
| Msa0180510 | Msa0849040 | -0.810831 | 9.479558e-51 | -8.615850e-47 |
| Msa0180510 | Msa0860030 | 0.813449 | 2.545055e-51 | -8.615850e-47 |
| Msa0180510 | Msa0860900 | 0.809607 | 1.740797e-50 | -8.615850e-47 |
| Msa0180510 | Msa0861130 | -0.807543 | 4.802894e-50 | -8.615850e-47 |
| Msa0180510 | Msa0888260 | -0.804847 | 1.774531e-49 | -8.615850e-47 |
| Msa0180510 | Msa0946280 | 0.818690 | 1.718599e-52 | -8.615850e-47 |
| Msa0180510 | Msa0962840 | -0.813590 | 2.370273e-51 | -8.615850e-47 |
| Msa0180510 | Msa0963090 | 0.806235 | 9.077117e-50 | -8.615850e-47 |
| Msa0180510 | Msa0994370 | -0.834638 | 2.670289e-56 | -8.615850e-47 |
| Msa0180510 | Msa1006910 | 0.831466 | 1.643186e-55 | -8.615850e-47 |
| Msa0180510 | Msa1025080 | -0.806539 | 7.833499e-50 | -8.615850e-47 |
| Msa0180510 | Msa1028760 | 0.810357 | 1.199841e-50 | -8.615850e-47 |
| Msa0180510 | Msa1029080 | 0.817598 | 3.035072e-52 | -8.615850e-47 |
| Msa0180510 | Msa1043250 | 0.804134 | 2.498822e-49 | -8.615850e-47 |
| Msa0180510 | Msa1054150 | 0.821496 | 3.915129e-53 | -8.615850e-47 |
| Msa0180510 | Msa1058170 | -0.800027 | 1.747079e-48 | -8.615850e-47 |
| Msa0180510 | Msa1063420 | -0.810763 | 9.806721e-51 | -8.615850e-47 |
| Msa0180510 | Msa1077340 | -0.808728 | 2.686106e-50 | -8.615850e-47 |
| Msa0180510 | Msa1080330 | 0.804816 | 1.801694e-49 | -8.615850e-47 |
| Msa0180510 | Msa1081790 | 0.856476 | 3.135411e-62 | -8.615850e-47 |
| Msa0180510 | Msa1087990 | -0.807039 | 6.139986e-50 | -8.615850e-47 |
| Msa0180510 | Msa1089460 | -0.804728 | 1.879706e-49 | -8.615850e-47 |
| Msa0180510 | Msa1113230 | 0.824350 | 8.466277e-54 | -8.615850e-47 |
| Msa0180510 | Msa1125960 | 0.807688 | 4.472166e-50 | -8.615850e-47 |
| Msa0180510 | Msa1127080 | 0.807321 | 5.352480e-50 | -8.615850e-47 |
| Msa0180510 | Msa1140230 | -0.810341 | 1.209406e-50 | -8.615850e-47 |
| Msa0180510 | Msa1156150 | 0.804735 | 1.872903e-49 | -8.615850e-47 |
| Msa0180510 | Msa1156170 | 0.816728 | 4.762569e-52 | -8.615850e-47 |
| Msa0180510 | Msa1166090 | 0.849810 | 2.546414e-60 | -8.615850e-47 |
| Msa0180510 | Msa1169850 | 0.806063 | 9.868979e-50 | -8.615850e-47 |
| Msa0180510 | Msa1176720 | -0.835368 | 1.747519e-56 | -8.615850e-47 |
| Msa0180510 | Msa1188600 | 0.809084 | 2.253541e-50 | -8.615850e-47 |
| Msa0180510 | Msa1191050 | 0.801259 | 9.797082e-49 | -8.615850e-47 |
| Msa0180510 | Msa1207310 | -0.836478 | 9.138649e-57 | -8.615850e-47 |
| Msa0180510 | Msa1207350 | -0.867686 | 1.139732e-65 | -8.615850e-47 |
| Msa0180510 | Msa1207470 | 0.800484 | 1.410183e-48 | -8.615850e-47 |
| Msa0180510 | Msa1215920 | -0.808661 | 2.775791e-50 | -8.615850e-47 |
| Msa0180510 | Msa1237980 | -0.805045 | 1.613216e-49 | -8.615850e-47 |
| Msa0180510 | Msa1242580 | 0.803352 | 3.631682e-49 | -8.615850e-47 |
| Msa0180510 | Msa1270660 | -0.811481 | 6.850768e-51 | -8.615850e-47 |
| Msa0180510 | Msa1270730 | -0.807232 | 5.590348e-50 | -8.615850e-47 |
| Msa0180510 | Msa1295330 | -0.814898 | 1.218753e-51 | -8.615850e-47 |
| Msa0180510 | Msa1316360 | -0.811639 | 6.329762e-51 | -8.615850e-47 |
| Msa0180510 | Msa1316440 | -0.838946 | 2.125960e-57 | -8.615850e-47 |
| Msa0180510 | Msa1331320 | -0.812293 | 4.560067e-51 | -8.615850e-47 |
| Msa0180510 | Msa1340460 | 0.806861 | 6.697996e-50 | -8.615850e-47 |
| Msa0180510 | Msa1395600 | 0.800955 | 1.130226e-48 | -8.615850e-47 |
| Msa0180510 | Msa1396400 | 0.850510 | 1.620783e-60 | -8.615850e-47 |
| Msa0180510 | Msa1401990 | -0.832351 | 9.932847e-56 | -8.615850e-47 |
| Msa0180510 | Msa1420270 | -0.810295 | 1.237273e-50 | -8.615850e-47 |
| Msa0180510 | Msa1428780 | -0.810929 | 9.025421e-51 | -8.615850e-47 |
| Msa0180510 | Msa1437730 | -0.808691 | 2.734812e-50 | -8.615850e-47 |
| Msa0180510 | Msa1444740 | -0.806682 | 7.305544e-50 | -8.615850e-47 |
| Msa0180510 | Msa1465610 | 0.972667 | 3.842460e-135 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180510 | MtrunA17_Chr1g0204781 | 96.024 | 327 | 11 | 1 | 1 | 327 | 1 | 325 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180510 | AT4G14720.2 | 42.614 | 352 | 140 | 10 | 1 | 327 | 1 | 315 | 1.20e-68 | 218 |
| Msa0180510 | AT4G14720.1 | 44.625 | 307 | 120 | 7 | 1 | 285 | 1 | 279 | 1.50e-68 | 217 |
| Msa0180510 | AT4G14713.1 | 41.471 | 340 | 142 | 8 | 10 | 327 | 9 | 313 | 4.43e-68 | 216 |
| Msa0180510 | AT4G14713.2 | 43.657 | 268 | 103 | 5 | 10 | 256 | 9 | 249 | 2.25e-58 | 189 |
| Msa0180510 | AT4G14713.3 | 39.113 | 248 | 103 | 4 | 10 | 236 | 9 | 229 | 9.48e-45 | 154 |
| Msa0180510 | AT4G14713.5 | 44.059 | 202 | 79 | 4 | 10 | 190 | 9 | 197 | 3.72e-42 | 146 |
| Msa0180510 | AT4G14713.4 | 44.059 | 202 | 79 | 4 | 10 | 190 | 9 | 197 | 3.72e-42 | 146 |
Find 128 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGTTGCAGTAGGGTCTT+TGG | 0.206864 | 1_4:-68489819 | None:intergenic |
| CCGTTCATCGTTTCCGATTC+CGG | 0.231819 | 1_4:-68490038 | None:intergenic |
| CCCATTGATTTGAATGATAA+AGG | 0.266889 | 1_4:+68494942 | Msa0180510:CDS |
| ACTGTTGCAGTAGGGTCTTT+GGG | 0.277280 | 1_4:-68489818 | None:intergenic |
| CAGGGATGCGCAGGCCTTCC+TGG | 0.302807 | 1_4:+68490561 | Msa0180510:intron |
| TGGAATACCCTCTGCATTAC+AGG | 0.304356 | 1_4:+68493502 | Msa0180510:CDS |
| TCAACCTCCGCCGAAGGCTT+TGG | 0.326869 | 1_4:+68490715 | Msa0180510:CDS |
| AAGAAGACTTCTTTATCAAT+AGG | 0.330075 | 1_4:-68492362 | None:intergenic |
| CGCAGATTCCTCAAAGATAA+AGG | 0.351475 | 1_4:+68490152 | Msa0180510:CDS |
| GAGGTTGAGGAGGGTGGTGG+TGG | 0.353896 | 1_4:-68490700 | None:intergenic |
| ACCTTTATCATTCAAATCAA+TGG | 0.357456 | 1_4:-68494943 | None:intergenic |
| TGCACACCTAGTGGGTCATT+TGG | 0.371549 | 1_4:+68492086 | Msa0180510:CDS |
| GAGGAGGGTGGTGGTGGTGA+TGG | 0.372920 | 1_4:-68490694 | None:intergenic |
| GATCGCCTGTGATTTGTTCC+AGG | 0.376842 | 1_4:-68490579 | None:intergenic |
| GTTAACAACGTTGGCATCAT+TGG | 0.378467 | 1_4:-68490804 | None:intergenic |
| TCCGTGGGTCTTTCAGAAAC+AGG | 0.382345 | 1_4:-68490779 | None:intergenic |
| GCACACCTAGTGGGTCATTT+GGG | 0.393611 | 1_4:+68492087 | Msa0180510:CDS |
| GTGGTGGTGATGGCGGTGAA+TGG | 0.397278 | 1_4:-68490684 | None:intergenic |
| GATCCCGAAGATACTGCTTT+GGG | 0.399067 | 1_4:+68490737 | Msa0180510:CDS |
| GTGAAGCTCCATGCCTCAAA+TGG | 0.403278 | 1_4:+68494825 | Msa0180510:CDS |
| TCAATGGGAAGGGTAACTTT+TGG | 0.406930 | 1_4:-68494927 | None:intergenic |
| TACCTGTTTGAGCGACTTGA+AGG | 0.408154 | 1_4:-68492403 | None:intergenic |
| TCCCACTTACCCTCTGTTGC+CGG | 0.413304 | 1_4:+68490019 | Msa0180510:five_prime_UTR |
| GGATCCCGAAGATACTGCTT+TGG | 0.413616 | 1_4:+68490736 | Msa0180510:CDS |
| GCGGAGGTTGAGGAGGGTGG+TGG | 0.414332 | 1_4:-68490703 | None:intergenic |
| TTACCCTCTGTTGCCGGAAT+CGG | 0.415730 | 1_4:+68490025 | Msa0180510:five_prime_UTR |
| CTGTTGCAGTAGGGTCTTTG+GGG | 0.420588 | 1_4:-68489817 | None:intergenic |
| AAGTCCCAAAGCAGTATCTT+CGG | 0.424966 | 1_4:-68490741 | None:intergenic |
| TTTGAGGCATGGAGCTTCAC+TGG | 0.425496 | 1_4:-68494822 | None:intergenic |
| ACATCTTTACCTACCTTATC+CGG | 0.425799 | 1_4:-68492161 | None:intergenic |
| TATAAAAGATGTAGAGGGTC+AGG | 0.427753 | 1_4:+68494567 | Msa0180510:intron |
| TGATGGAGTTTCGCCGGATA+AGG | 0.433029 | 1_4:+68492148 | Msa0180510:CDS |
| GGAAGCACAGCTCGTGATGC+TGG | 0.446112 | 1_4:+68493531 | Msa0180510:CDS |
| ACGACTTGAATTCCCATTTG+AGG | 0.447514 | 1_4:-68494838 | None:intergenic |
| ATCCTTCAAGTCGCTCAAAC+AGG | 0.448349 | 1_4:+68492401 | Msa0180510:CDS |
| AGTTGTTACCTTTATCTTTG+AGG | 0.457102 | 1_4:-68490160 | None:intergenic |
| AAAGCCTTCGGCGGAGGTTG+AGG | 0.462001 | 1_4:-68490713 | None:intergenic |
| GAGGGTGGTGGTGGTGATGG+CGG | 0.465413 | 1_4:-68490691 | None:intergenic |
| TTGGTGTAGTGAGGGAGTGA+TGG | 0.465840 | 1_4:-68489882 | None:intergenic |
| GCCAACGTTGTTAACCCTCC+CGG | 0.470865 | 1_4:+68490812 | Msa0180510:CDS |
| CCTTTATCATTCAAATCAAT+GGG | 0.472367 | 1_4:-68494942 | None:intergenic |
| TGAAGGATTGTTGTGTCAGT+AGG | 0.473687 | 1_4:-68492386 | None:intergenic |
| AGTGTAGTGTAGTGTAGTGT+TGG | 0.476814 | 1_4:-68489901 | None:intergenic |
| TTTATTTGAAGGATTATCCT+GGG | 0.483950 | 1_4:-68492306 | None:intergenic |
| GGATCCAAAGCCTTCGGCGG+AGG | 0.495977 | 1_4:-68490719 | None:intergenic |
| GCCTTCGGCGGAGGTTGAGG+AGG | 0.498126 | 1_4:-68490710 | None:intergenic |
| CTTTGAGAGAAATCACCTGC+TGG | 0.508162 | 1_4:-68490601 | None:intergenic |
| TTCCGGCAACAGAGGGTAAG+TGG | 0.509404 | 1_4:-68490021 | None:intergenic |
| CTGGAAACTAGAGGCAGTCT+AGG | 0.512274 | 1_4:-68494885 | None:intergenic |
| AGTGTAGTGTTGGTGTAGTG+AGG | 0.513491 | 1_4:-68489891 | None:intergenic |
| TATCATTCAAATCAATGGGA+AGG | 0.514085 | 1_4:-68494938 | None:intergenic |
| CCCTCCTCAACCTCCGCCGA+AGG | 0.515746 | 1_4:+68490709 | Msa0180510:CDS |
| AAATGTCATCTTCAGTGAGT+TGG | 0.516724 | 1_4:-68490106 | None:intergenic |
| TTGAATTCCCATTTGAGGCA+TGG | 0.517522 | 1_4:-68494833 | None:intergenic |
| GGGTAAGTGGGACCATGTAC+AGG | 0.520861 | 1_4:-68490008 | None:intergenic |
| AGTCCCAAAGCAGTATCTTC+GGG | 0.521983 | 1_4:-68490740 | None:intergenic |
| GTTGGCATCATTGGTTTCCG+TGG | 0.522851 | 1_4:-68490795 | None:intergenic |
| GTGATGGCGGTGAATGGCGG+AGG | 0.524011 | 1_4:-68490678 | None:intergenic |
| TCTTCAGTGAGTTGGTTAAG+AGG | 0.524819 | 1_4:-68490098 | None:intergenic |
| TGGTGTAGTGAGGGAGTGAT+GGG | 0.526094 | 1_4:-68489881 | None:intergenic |
| ACACCAACGCCGACGGTAGC+CGG | 0.528495 | 1_4:-68490653 | None:intergenic |
| TGAAGCTCCATGCCTCAAAT+GGG | 0.529697 | 1_4:+68494826 | Msa0180510:CDS |
| GGGAAAGAAATGTGACCGGA+GGG | 0.531913 | 1_4:-68489795 | None:intergenic |
| TGTACTACTACTGTTGCAGT+AGG | 0.532278 | 1_4:-68489827 | None:intergenic |
| TCGGCGGAGGTTGAGGAGGG+TGG | 0.532423 | 1_4:-68490706 | None:intergenic |
| AGGCATGGAGCTTCACTGGA+AGG | 0.532614 | 1_4:-68494818 | None:intergenic |
| GGAAAGAAATGTGACCGGAG+GGG | 0.533557 | 1_4:-68489794 | None:intergenic |
| CCTCTGCATTACAGGGAGAA+AGG | 0.534355 | 1_4:+68493510 | Msa0180510:CDS |
| TCTTCGGGATCCAAAGCCTT+CGG | 0.534680 | 1_4:-68490725 | None:intergenic |
| GTGGTGATGGCGGTGAATGG+CGG | 0.537319 | 1_4:-68490681 | None:intergenic |
| CTTTCTCCCTGTAATGCAGA+GGG | 0.537471 | 1_4:-68493509 | None:intergenic |
| TTTCCGATTCCGGCAACAGA+GGG | 0.537833 | 1_4:-68490028 | None:intergenic |
| ATCATTCAAATCAATGGGAA+GGG | 0.540719 | 1_4:-68494937 | None:intergenic |
| GAAGGATTGTTGTGTCAGTA+GGG | 0.541726 | 1_4:-68492385 | None:intergenic |
| TGTTGCAGTAGGGTCTTTGG+GGG | 0.546032 | 1_4:-68489816 | None:intergenic |
| GTTAAGAGGTCTGTCGAGGA+TGG | 0.553244 | 1_4:-68490084 | None:intergenic |
| TGAAGGATTATCCTGGGGAA+AGG | 0.554218 | 1_4:-68492300 | None:intergenic |
| CAAATCACAGGCGATCCAGC+AGG | 0.554699 | 1_4:+68490586 | Msa0180510:CDS |
| GGGGAAAGAAATGTGACCGG+AGG | 0.556950 | 1_4:-68489796 | None:intergenic |
| ATGTCCGTCCTCCTTTCCCC+AGG | 0.560265 | 1_4:+68492289 | Msa0180510:CDS |
| GAGGTCTGTCGAGGATGGAT+CGG | 0.562371 | 1_4:-68490079 | None:intergenic |
| GTGTAGTGTTGGTGTAGTGA+GGG | 0.564606 | 1_4:-68489890 | None:intergenic |
| CCTTTCTCCCTGTAATGCAG+AGG | 0.565241 | 1_4:-68493510 | None:intergenic |
| GCCTGTGATTTGTTCCAGGA+AGG | 0.565338 | 1_4:-68490575 | None:intergenic |
| CCAACGTTGTTAACCCTCCC+GGG | 0.565503 | 1_4:+68490813 | Msa0180510:CDS |
| TGTCTATGATGGAGTTTCGC+CGG | 0.565522 | 1_4:+68492142 | Msa0180510:CDS |
| TTGGCATCATTGGTTTCCGT+GGG | 0.565795 | 1_4:-68490794 | None:intergenic |
| ACACCGGCTACCGTCGGCGT+TGG | 0.567567 | 1_4:+68490650 | Msa0180510:CDS |
| GCCTTCCTGGAACAAATCAC+AGG | 0.567775 | 1_4:+68490574 | Msa0180510:CDS |
| CCTTCGGCGGAGGTTGAGGA+GGG | 0.574219 | 1_4:-68490709 | None:intergenic |
| ACCTGTTTCTGAAAGACCCA+CGG | 0.575091 | 1_4:+68490778 | Msa0180510:CDS |
| GAGGATGGATCGGAAGGAAA+CGG | 0.575789 | 1_4:-68490069 | None:intergenic |
| TCGAAGGGCAAGAAACTGAC+TGG | 0.582148 | 1_4:+68494762 | Msa0180510:CDS |
| GTGTTCGTACAGGGATGCGC+AGG | 0.586574 | 1_4:+68490552 | Msa0180510:intron |
| TGATGGGTCAAGAAGTGTGA+AGG | 0.587661 | 1_4:-68489865 | None:intergenic |
| GTTTCCGATTCCGGCAACAG+AGG | 0.591253 | 1_4:-68490029 | None:intergenic |
| GGTAAGGTGAATGTCTATGA+TGG | 0.592087 | 1_4:+68492131 | Msa0180510:CDS |
| CACAGAGGGTGCACACCTAG+TGG | 0.593532 | 1_4:+68492077 | Msa0180510:intron |
| AGAGGCAGTCTAGGCTGTGG+TGG | 0.596317 | 1_4:-68494876 | None:intergenic |
| GGAATACCCTCTGCATTACA+GGG | 0.598431 | 1_4:+68493503 | Msa0180510:CDS |
| TTATCCTGGGGAAAGGAGGA+CGG | 0.604225 | 1_4:-68492293 | None:intergenic |
| AGGATTATCCTGGGGAAAGG+AGG | 0.608359 | 1_4:-68492297 | None:intergenic |
| TCCGGCAACAGAGGGTAAGT+GGG | 0.613361 | 1_4:-68490020 | None:intergenic |
| TTATCAATAGGTAAGTTGCA+AGG | 0.614238 | 1_4:-68492350 | None:intergenic |
| TCTGTCGAGGATGGATCGGA+AGG | 0.617863 | 1_4:-68490075 | None:intergenic |
| ACCTACTGACGATGATACAC+CGG | 0.620314 | 1_4:+68490634 | Msa0180510:CDS |
| ACTAGAGGCAGTCTAGGCTG+TGG | 0.622722 | 1_4:-68494879 | None:intergenic |
| CCGGAATCGGAAACGATGAA+CGG | 0.630536 | 1_4:+68490038 | Msa0180510:exon |
| GCGATATCTTGAAAAGCGAA+AGG | 0.632146 | 1_4:+68494612 | Msa0180510:CDS |
| GGAGGAGACACCAACGCCGA+CGG | 0.632850 | 1_4:-68490660 | None:intergenic |
| ATAAATTCTATACCTGTACA+TGG | 0.634167 | 1_4:+68489996 | Msa0180510:five_prime_UTR |
| AATGGAGAACAGACCCGGGA+GGG | 0.635558 | 1_4:-68490826 | None:intergenic |
| CCCGGGAGGGTTAACAACGT+TGG | 0.637856 | 1_4:-68490813 | None:intergenic |
| AGACTGCCTCTAGTTTCCAG+TGG | 0.639013 | 1_4:+68494888 | Msa0180510:CDS |
| GATGATACACCGGCTACCGT+CGG | 0.644121 | 1_4:+68490644 | Msa0180510:CDS |
| ATCTTGAAAAGCGAAAGGAC+AGG | 0.644523 | 1_4:+68494617 | Msa0180510:CDS |
| ACAGAGGGTGCACACCTAGT+GGG | 0.649773 | 1_4:+68492078 | Msa0180510:intron |
| TCGGGATCCAAAGCCTTCGG+CGG | 0.652180 | 1_4:-68490722 | None:intergenic |
| ATTTGCCCAAATGACCCACT+AGG | 0.656723 | 1_4:-68492092 | None:intergenic |
| TTATTTGAAGGATTATCCTG+GGG | 0.659271 | 1_4:-68492305 | None:intergenic |
| GATGGGTCAAGAAGTGTGAA+GGG | 0.659785 | 1_4:-68489864 | None:intergenic |
| GCCGGTGTATCATCGTCAGT+AGG | 0.662569 | 1_4:-68490635 | None:intergenic |
| GTACTACTACTGTTGCAGTA+GGG | 0.667756 | 1_4:-68489826 | None:intergenic |
| GCTGAGCCACTGGAAACTAG+AGG | 0.668085 | 1_4:-68494894 | None:intergenic |
| GTTGCAGTAGGGTCTTTGGG+GGG | 0.678989 | 1_4:-68489815 | None:intergenic |
| GTTGGTTAAGAGGTCTGTCG+AGG | 0.685077 | 1_4:-68490088 | None:intergenic |
| AAATGGAGAACAGACCCGGG+AGG | 0.721352 | 1_4:-68490827 | None:intergenic |
| GAATCGGAAACGATGAACGG+CGG | 0.745087 | 1_4:+68490041 | Msa0180510:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTATTTTTTTTGTGT+TGG | + | chr1_4:68490876-68490895 | Msa0180510:intron | 10.0% |
| !! | TAATAAAAAAAATGAAATGA+TGG | + | chr1_4:68490987-68491006 | Msa0180510:intron | 10.0% |
| !!! | TTATTTATTTGTTTAGAATT+AGG | + | chr1_4:68491144-68491163 | Msa0180510:intron | 10.0% |
| !!! | TTTAATATCATCTATATTTT+GGG | + | chr1_4:68491380-68491399 | Msa0180510:intron | 10.0% |
| !!! | TATCTAAAGTAATAATTAAA+TGG | - | chr1_4:68491517-68491536 | None:intergenic | 10.0% |
| !! | AAAAAATCATGAAAGAAAAA+TGG | - | chr1_4:68490847-68490866 | None:intergenic | 15.0% |
| !!! | CTTTAATATCATCTATATTT+TGG | + | chr1_4:68491379-68491398 | Msa0180510:intron | 15.0% |
| !!! | TCATATTTAATTGTTGTTTA+CGG | + | chr1_4:68491423-68491442 | Msa0180510:intron | 15.0% |
| !! | TAACCTAAAATAATCATTTA+GGG | - | chr1_4:68491584-68491603 | None:intergenic | 15.0% |
| !! | TTAACCTAAAATAATCATTT+AGG | - | chr1_4:68491585-68491604 | None:intergenic | 15.0% |
| !!! | ATGATCATTTTGTATATTAA+AGG | + | chr1_4:68491607-68491626 | Msa0180510:intron | 15.0% |
| !! | ATAATTAACAAAACTAACAT+TGG | - | chr1_4:68492017-68492036 | None:intergenic | 15.0% |
| !!! | ATAGCTTTAATTCAAAAAAT+CGG | - | chr1_4:68493072-68493091 | None:intergenic | 15.0% |
| !! | AATTTAATACATACATCAAA+AGG | - | chr1_4:68494351-68494370 | None:intergenic | 15.0% |
| !!! | TTTTGATGTATGTATTAAAT+TGG | + | chr1_4:68494350-68494369 | Msa0180510:intron | 15.0% |
| !! | ATTGGAGTACAAAAATTAAA+TGG | - | chr1_4:68490307-68490326 | None:intergenic | 20.0% |
| !!! | TTTGTTATCTTTTGTTTCTT+GGG | + | chr1_4:68490912-68490931 | Msa0180510:intron | 20.0% |
| !!! | TTATTTGTTTAGAATTAGGT+TGG | + | chr1_4:68491148-68491167 | Msa0180510:intron | 20.0% |
| !!! | TATTTGTTTAGAATTAGGTT+GGG | + | chr1_4:68491149-68491168 | Msa0180510:intron | 20.0% |
| !!! | AAACCCTAAATGATTATTTT+AGG | + | chr1_4:68491578-68491597 | Msa0180510:intron | 20.0% |
| !! | TACAAGTATGGTTAATTATT+GGG | - | chr1_4:68492233-68492252 | None:intergenic | 20.0% |
| !! | ATACAAGTATGGTTAATTAT+TGG | - | chr1_4:68492234-68492253 | None:intergenic | 20.0% |
| !! | TAATTCAAAAAATCGGTATT+CGG | - | chr1_4:68493065-68493084 | None:intergenic | 20.0% |
| !! | TGAATTAATGCAAAAATCAT+TGG | + | chr1_4:68493182-68493201 | Msa0180510:intron | 20.0% |
| !!! | CTTTTACTTGTTTAAAATCA+TGG | + | chr1_4:68493305-68493324 | Msa0180510:intron | 20.0% |
| !!! | TTTTTACTCGTTTAAAATCA+TGG | + | chr1_4:68493408-68493427 | Msa0180510:intron | 20.0% |
| !!! | AAGATGTTTAACTTCATAAT+TGG | + | chr1_4:68493448-68493467 | Msa0180510:intron | 20.0% |
| !! | TTTATCTGTAAAACCAAATT+TGG | - | chr1_4:68493478-68493497 | None:intergenic | 20.0% |
| !!! | ATTTGGTTTTACAGATAAAA+TGG | + | chr1_4:68493479-68493498 | Msa0180510:intron | 20.0% |
| !!! | TTGATAGTGATTTATGTATT+TGG | + | chr1_4:68494200-68494219 | Msa0180510:intron | 20.0% |
| !!! | TGATAGTGATTTATGTATTT+GGG | + | chr1_4:68494201-68494220 | Msa0180510:intron | 20.0% |
| !! | AATAAATATTACCGATACTT+AGG | - | chr1_4:68494542-68494561 | None:intergenic | 20.0% |
| !!! | TTGTTTTATAAAAGATGTAG+AGG | + | chr1_4:68494561-68494580 | Msa0180510:intron | 20.0% |
| !!! | TGTTTTATAAAAGATGTAGA+GGG | + | chr1_4:68494562-68494581 | Msa0180510:intron | 20.0% |
| !!! | TTACCACTTTTTTAGTTTTA+AGG | + | chr1_4:68494694-68494713 | Msa0180510:intron | 20.0% |
| !! | ATTCCTTAAAACTAAAAAAG+TGG | - | chr1_4:68494700-68494719 | None:intergenic | 20.0% |
| !! | AGAGTAATAAAATAATTCAG+CGG | - | chr1_4:68494725-68494744 | None:intergenic | 20.0% |
| ! | ATAAATTCTATACCTGTACA+TGG | + | chr1_4:68489996-68490015 | Msa0180510:five_prime_UTR | 25.0% |
| ! | GTTCTATCAAATACCATATT+TGG | - | chr1_4:68490345-68490364 | None:intergenic | 25.0% |
| ! | TGGTATTTGATAGAACATTA+TGG | + | chr1_4:68490349-68490368 | Msa0180510:intron | 25.0% |
| ! | TATTTGATAGAACATTATGG+CGG | + | chr1_4:68490352-68490371 | Msa0180510:intron | 25.0% |
| !!! | GTTTGTTATCTTTTGTTTCT+TGG | + | chr1_4:68490911-68490930 | Msa0180510:intron | 25.0% |
| !! | GAGTTGATTATAGCATAATT+TGG | + | chr1_4:68491092-68491111 | Msa0180510:intron | 25.0% |
| !!! | TTTTATAGCTTTATGTGAAG+TGG | + | chr1_4:68491186-68491205 | Msa0180510:intron | 25.0% |
| !!! | TTTATAGCTTTATGTGAAGT+GGG | + | chr1_4:68491187-68491206 | Msa0180510:intron | 25.0% |
| !!! | TCTAGATATTTGATAATGAC+AGG | - | chr1_4:68491350-68491369 | None:intergenic | 25.0% |
| ! | TTTAGATATCATGTTTGAAG+TGG | + | chr1_4:68491529-68491548 | Msa0180510:intron | 25.0% |
| !! | TTAGATATCATGTTTGAAGT+GGG | + | chr1_4:68491530-68491549 | Msa0180510:intron | 25.0% |
| ! | AAATTCCACATTAACAAAAC+TGG | - | chr1_4:68491727-68491746 | None:intergenic | 25.0% |
| !!! | AAGTGCAGTTTTTAGTTTAA+TGG | - | chr1_4:68491841-68491860 | None:intergenic | 25.0% |
| ! | TTTGTGTAAAATATGACTGA+AGG | + | chr1_4:68491987-68492006 | Msa0180510:intron | 25.0% |
| ! | GGTGAAATTTAATTGATGTA+TGG | - | chr1_4:68492209-68492228 | None:intergenic | 25.0% |
| ! | TTTATTTGAAGGATTATCCT+GGG | - | chr1_4:68492309-68492328 | None:intergenic | 25.0% |
| !!! | TTTTATTTGAAGGATTATCC+TGG | - | chr1_4:68492310-68492329 | None:intergenic | 25.0% |
| ! | AAATAAAAATGCAGCAGTTT+GGG | + | chr1_4:68492322-68492341 | Msa0180510:CDS | 25.0% |
| ! | AAGAAGACTTCTTTATCAAT+AGG | - | chr1_4:68492365-68492384 | None:intergenic | 25.0% |
| !!! | TTTTTTCATGCATACTTTTC+TGG | + | chr1_4:68492496-68492515 | Msa0180510:intron | 25.0% |
| ! | TTATTGAAAATAGGTGTTCT+AGG | - | chr1_4:68492863-68492882 | None:intergenic | 25.0% |
| ! | TTATTGAAAATAGGTGTTCT+AGG | - | chr1_4:68492863-68492882 | None:intergenic | 25.0% |
| ! | GTTCAAGTCAAATATTAGAT+CGG | - | chr1_4:68492954-68492973 | None:intergenic | 25.0% |
| !!! | CAATGACTTGTTTAAAATCA+TGG | + | chr1_4:68493129-68493148 | Msa0180510:intron | 25.0% |
| !! | TTTTATCTTGTGTTCTCTTT+TGG | + | chr1_4:68493597-68493616 | Msa0180510:intron | 25.0% |
| ! | CTATCAACAAATTATCTACT+TGG | - | chr1_4:68493640-68493659 | None:intergenic | 25.0% |
| !!! | CTATTTTTCTACCTTAGTTT+TGG | + | chr1_4:68493897-68493916 | Msa0180510:intron | 25.0% |
| !! | TCTAATAGTAGCAATTTTAC+TGG | - | chr1_4:68493984-68494003 | None:intergenic | 25.0% |
| ! | ACATAAATCACTATCAATCT+CGG | - | chr1_4:68494197-68494216 | None:intergenic | 25.0% |
| ! | TGAAATATGAAGAAATCTTG+TGG | + | chr1_4:68494283-68494302 | Msa0180510:intron | 25.0% |
| ! | GAAATATGAAGAAATCTTGT+GGG | + | chr1_4:68494284-68494303 | Msa0180510:intron | 25.0% |
| ! | AATTATGAGAACCTAAGTAT+CGG | + | chr1_4:68494528-68494547 | Msa0180510:intron | 25.0% |
| ! | GAGTAATAAAATAATTCAGC+GGG | - | chr1_4:68494724-68494743 | None:intergenic | 25.0% |
| !! | TTTTATTACTCTGCCTTTTT+AGG | + | chr1_4:68494733-68494752 | Msa0180510:intron | 25.0% |
| !! | TTTATTACTCTGCCTTTTTA+GGG | + | chr1_4:68494734-68494753 | Msa0180510:intron | 25.0% |
| ! | CCTTTATCATTCAAATCAAT+GGG | - | chr1_4:68494945-68494964 | None:intergenic | 25.0% |
| ! | ACCTTTATCATTCAAATCAA+TGG | - | chr1_4:68494946-68494965 | None:intergenic | 25.0% |
| AGTTGTTACCTTTATCTTTG+AGG | - | chr1_4:68490163-68490182 | None:intergenic | 30.0% | |
| ATTAAATGGAAGTTGTTCTC+AGG | - | chr1_4:68490293-68490312 | None:intergenic | 30.0% | |
| TTCTTCATTGGATCCAAATA+TGG | + | chr1_4:68490329-68490348 | Msa0180510:intron | 30.0% | |
| TTAATGTTTAGTGAGAGTGA+AGG | + | chr1_4:68491056-68491075 | Msa0180510:intron | 30.0% | |
| TAATGTTTAGTGAGAGTGAA+GGG | + | chr1_4:68491057-68491076 | Msa0180510:intron | 30.0% | |
| !! | TTAGAATTAGGTTGGGAAAT+TGG | + | chr1_4:68491156-68491175 | Msa0180510:intron | 30.0% |
| ! | GATGAATGTGTGTTGATATA+TGG | + | chr1_4:68491228-68491247 | Msa0180510:intron | 30.0% |
| ! | AATGTGTGTTGATATATGGA+AGG | + | chr1_4:68491232-68491251 | Msa0180510:intron | 30.0% |
| GAGTGGATGGAAAATATTTA+GGG | + | chr1_4:68491269-68491288 | Msa0180510:intron | 30.0% | |
| ! | TTTGAGCTTTTCTTTGTTAC+TGG | + | chr1_4:68491296-68491315 | Msa0180510:intron | 30.0% |
| ! | TTGAGCTTTTCTTTGTTACT+GGG | + | chr1_4:68491297-68491316 | Msa0180510:intron | 30.0% |
| CATGACTTCAACAATGAATA+TGG | + | chr1_4:68491691-68491710 | Msa0180510:intron | 30.0% | |
| !!! | AATTGCCAGTTTTGTTAATG+TGG | + | chr1_4:68491719-68491738 | Msa0180510:intron | 30.0% |
| GAATTTCTTTCAGTTCCAAT+CGG | + | chr1_4:68491741-68491760 | Msa0180510:intron | 30.0% | |
| TGACTATTATTACTACCGAT+TGG | - | chr1_4:68491759-68491778 | None:intergenic | 30.0% | |
| ATGGAATCAAGAGATGTTAA+AGG | - | chr1_4:68491822-68491841 | None:intergenic | 30.0% | |
| ! | TCCATTCAAGTTCTTAACAT+TGG | + | chr1_4:68492036-68492055 | Msa0180510:intron | 30.0% |
| ACCAATGTTAAGAACTTGAA+TGG | - | chr1_4:68492040-68492059 | None:intergenic | 30.0% | |
| ! | CAAATGACAATTTTCTACTG+TGG | + | chr1_4:68492110-68492129 | Msa0180510:CDS | 30.0% |
| AAGTATGGTTAATTATTGGG+AGG | - | chr1_4:68492230-68492249 | None:intergenic | 30.0% | |
| TTAACCATACTTGTATTTGC+AGG | + | chr1_4:68492238-68492257 | Msa0180510:intron | 30.0% | |
| TTATTTGAAGGATTATCCTG+GGG | - | chr1_4:68492308-68492327 | None:intergenic | 30.0% | |
| !! | ACTGCTGCATTTTTATTTGA+AGG | - | chr1_4:68492320-68492339 | None:intergenic | 30.0% |
| CAAATAAAAATGCAGCAGTT+TGG | + | chr1_4:68492321-68492340 | Msa0180510:CDS | 30.0% | |
| TTATCAATAGGTAAGTTGCA+AGG | - | chr1_4:68492353-68492372 | None:intergenic | 30.0% | |
| AATTATCACAATCCAACACA+TGG | + | chr1_4:68492826-68492845 | Msa0180510:intron | 30.0% | |
| TCTAGGTGGTTATTGAAAAT+AGG | - | chr1_4:68492872-68492891 | None:intergenic | 30.0% | |
| ! | ACCTATTTTCAATAACCACA+CGG | + | chr1_4:68492894-68492913 | Msa0180510:intron | 30.0% |
| ATGCTATCAAACTATCAAAC+TGG | - | chr1_4:68492929-68492948 | None:intergenic | 30.0% | |
| ! | AGTTTGATAGTTTGATAGCA+TGG | + | chr1_4:68492928-68492947 | Msa0180510:intron | 30.0% |
| CATCCCAGTGATTTAAAAAT+CGG | - | chr1_4:68493014-68493033 | None:intergenic | 30.0% | |
| CATGGTAACATTTGTAAGTT+AGG | + | chr1_4:68493147-68493166 | Msa0180510:intron | 30.0% | |
| ! | CATAATTGGTGTTCCAAATT+TGG | + | chr1_4:68493462-68493481 | Msa0180510:intron | 30.0% |
| !! | TGGTTTTACAGATAAAATGG+TGG | + | chr1_4:68493482-68493501 | Msa0180510:intron | 30.0% |
| TACAGATGATTCCAATTAAG+TGG | + | chr1_4:68493674-68493693 | Msa0180510:intron | 30.0% | |
| ACAGATGATTCCAATTAAGT+GGG | + | chr1_4:68493675-68493694 | Msa0180510:intron | 30.0% | |
| !! | AAAAGCTTTTTCCACTAGAT+AGG | - | chr1_4:68493835-68493854 | None:intergenic | 30.0% |
| AGCAGTAACTTTATAACACA+AGG | - | chr1_4:68493879-68493898 | None:intergenic | 30.0% | |
| ATTGACATATATTGCAACAG+AGG | - | chr1_4:68494032-68494051 | None:intergenic | 30.0% | |
| CATAAATCACTATCAATCTC+GGG | - | chr1_4:68494196-68494215 | None:intergenic | 30.0% | |
| ! | TCTTTTAGCCAGGTAATATA+CGG | - | chr1_4:68494239-68494258 | None:intergenic | 30.0% |
| ACTTAGGTTCTCATAATTTG+AGG | - | chr1_4:68494526-68494545 | None:intergenic | 30.0% | |
| ! | TTATTACTCTGCCTTTTTAG+GGG | + | chr1_4:68494735-68494754 | Msa0180510:intron | 30.0% |
| ATCATTCAAATCAATGGGAA+GGG | - | chr1_4:68494940-68494959 | None:intergenic | 30.0% | |
| TATCATTCAAATCAATGGGA+AGG | - | chr1_4:68494941-68494960 | None:intergenic | 30.0% | |
| !! | CCCATTGATTTGAATGATAA+AGG | + | chr1_4:68494942-68494961 | Msa0180510:CDS | 30.0% |
| AAATGTCATCTTCAGTGAGT+TGG | - | chr1_4:68490109-68490128 | None:intergenic | 35.0% | |
| GAAGAAGAAAGAGAAAGAGA+AGG | - | chr1_4:68490188-68490207 | None:intergenic | 35.0% | |
| GGAGTGGATGGAAAATATTT+AGG | + | chr1_4:68491268-68491287 | Msa0180510:intron | 35.0% | |
| TGAGATTGTCAGTACTTTGA+TGG | - | chr1_4:68491475-68491494 | None:intergenic | 35.0% | |
| GCTATATATCAACTGAGAGA+AGG | + | chr1_4:68491554-68491573 | Msa0180510:intron | 35.0% | |
| !! | CTGAAAAAAGTGTTGCGTTA+GGG | + | chr1_4:68491786-68491805 | Msa0180510:intron | 35.0% |
| TTATGCCATTCTTTGTTGGA+AGG | + | chr1_4:68491859-68491878 | Msa0180510:intron | 35.0% | |
| ! | GACAATTTTCTACTGTGGTA+AGG | + | chr1_4:68492115-68492134 | Msa0180510:CDS | 35.0% |
| ACATCTTTACCTACCTTATC+CGG | - | chr1_4:68492164-68492183 | None:intergenic | 35.0% | |
| TCAAACAGGTAGTTAGCAAT+TGG | + | chr1_4:68492415-68492434 | Msa0180510:intron | 35.0% | |
| CAAACAGGTAGTTAGCAATT+GGG | + | chr1_4:68492416-68492435 | Msa0180510:intron | 35.0% | |
| TGTGACTATGTCATAGTCAA+TGG | - | chr1_4:68492612-68492631 | None:intergenic | 35.0% | |
| ! | TTGAAAATAGGTGTTCTAGG+TGG | - | chr1_4:68492860-68492879 | None:intergenic | 35.0% |
| ! | CCTATTTTCAATAACCACAC+GGG | + | chr1_4:68492895-68492914 | Msa0180510:intron | 35.0% |
| CAGTGATTTAAAAATCGGCT+CGG | - | chr1_4:68493009-68493028 | None:intergenic | 35.0% | |
| !! | GAGCCGATTTTTAAATCACT+GGG | + | chr1_4:68493008-68493027 | Msa0180510:intron | 35.0% |
| ! | GTTGAGCTTGTTCATCTTAT+AGG | - | chr1_4:68493107-68493126 | None:intergenic | 35.0% |
| TAAAATCATGGCATCTAGTC+AGG | + | chr1_4:68493420-68493439 | Msa0180510:intron | 35.0% | |
| AAAACAAAGGCCCACTTAAT+TGG | - | chr1_4:68493688-68493707 | None:intergenic | 35.0% | |
| GGATGCCAAGAAAAAAACAA+AGG | - | chr1_4:68493701-68493720 | None:intergenic | 35.0% | |
| AGATCACAATAGCATGACTT+GGG | - | chr1_4:68493722-68493741 | None:intergenic | 35.0% | |
| AAGATCACAATAGCATGACT+TGG | - | chr1_4:68493723-68493742 | None:intergenic | 35.0% | |
| ACTAGATAGGATAGGAAACA+GGG | - | chr1_4:68493822-68493841 | None:intergenic | 35.0% | |
| ! | CTTTTTCCACTAGATAGGAT+AGG | - | chr1_4:68493830-68493849 | None:intergenic | 35.0% |
| AATTGATCATGTGTCAGTAC+CGG | + | chr1_4:68494061-68494080 | Msa0180510:intron | 35.0% | |
| ! | CATGCATGGAATCTTTTGAA+GGG | - | chr1_4:68494117-68494136 | None:intergenic | 35.0% |
| ! | ACATGCATGGAATCTTTTGA+AGG | - | chr1_4:68494118-68494137 | None:intergenic | 35.0% |
| ! | ACGCATATTTTGTACATGCA+TGG | - | chr1_4:68494131-68494150 | None:intergenic | 35.0% |
| ! | CTTTTAGCCAGGTAATATAC+GGG | - | chr1_4:68494238-68494257 | None:intergenic | 35.0% |
| CTATAGCAGTAGTGTATAAG+AGG | + | chr1_4:68494322-68494341 | Msa0180510:intron | 35.0% | |
| ! | GGTTCTCATAATTTGAGGTA+TGG | - | chr1_4:68494521-68494540 | None:intergenic | 35.0% |
| TATAAAAGATGTAGAGGGTC+AGG | + | chr1_4:68494567-68494586 | Msa0180510:intron | 35.0% | |
| CTAAAAAAGTGGTAACACGA+GGG | - | chr1_4:68494689-68494708 | None:intergenic | 35.0% | |
| ACTAAAAAAGTGGTAACACG+AGG | - | chr1_4:68494690-68494709 | None:intergenic | 35.0% | |
| GTACTACTACTGTTGCAGTA+GGG | - | chr1_4:68489829-68489848 | None:intergenic | 40.0% | |
| TGTACTACTACTGTTGCAGT+AGG | - | chr1_4:68489830-68489849 | None:intergenic | 40.0% | |
| AGTGTAGTGTAGTGTAGTGT+TGG | - | chr1_4:68489904-68489923 | None:intergenic | 40.0% | |
| !! | TCTTCAGTGAGTTGGTTAAG+AGG | - | chr1_4:68490101-68490120 | None:intergenic | 40.0% |
| CGCAGATTCCTCAAAGATAA+AGG | + | chr1_4:68490152-68490171 | Msa0180510:CDS | 40.0% | |
| TGGAGCATGAGAGGATAAAA+TGG | - | chr1_4:68490258-68490277 | None:intergenic | 40.0% | |
| ! | TTTTATCCTCTCATGCTCCA+TGG | + | chr1_4:68490258-68490277 | Msa0180510:intron | 40.0% |
| GTACTCCAATGCTTCTTCAT+TGG | + | chr1_4:68490317-68490336 | Msa0180510:intron | 40.0% | |
| ! | TGGATCCAATGAAGAAGCAT+TGG | - | chr1_4:68490325-68490344 | None:intergenic | 40.0% |
| AAGTCCCAAAGCAGTATCTT+CGG | - | chr1_4:68490744-68490763 | None:intergenic | 40.0% | |
| GTTAACAACGTTGGCATCAT+TGG | - | chr1_4:68490807-68490826 | None:intergenic | 40.0% | |
| AGAAAAATGGAGAACAGACC+CGG | - | chr1_4:68490834-68490853 | None:intergenic | 40.0% | |
| TGACTGTGTCAGTATCATTC+CGG | - | chr1_4:68490960-68490979 | None:intergenic | 40.0% | |
| ! | GTGAAGTGGGAGATGATTTT+TGG | + | chr1_4:68491200-68491219 | Msa0180510:intron | 40.0% |
| ATGGAAGGTGAATCTGTTTG+TGG | + | chr1_4:68491247-68491266 | Msa0180510:intron | 40.0% | |
| ACTGGGATGTATGTATTCTG+TGG | + | chr1_4:68491314-68491333 | Msa0180510:intron | 40.0% | |
| ! | TTACGGTTTTCTCTTCATGC+CGG | + | chr1_4:68491440-68491459 | Msa0180510:intron | 40.0% |
| ! | ACTTTGATGGCACTAAAACC+CGG | - | chr1_4:68491462-68491481 | None:intergenic | 40.0% |
| ! | AAATATACCAAGCGCTGTGT+TGG | + | chr1_4:68491652-68491671 | Msa0180510:intron | 40.0% |
| !!! | CCTAACGCAACACTTTTTTC+AGG | - | chr1_4:68491788-68491807 | None:intergenic | 40.0% |
| !! | CCTGAAAAAAGTGTTGCGTT+AGG | + | chr1_4:68491785-68491804 | Msa0180510:intron | 40.0% |
| GCACTTATGCCATTCTTTGT+TGG | + | chr1_4:68491855-68491874 | Msa0180510:intron | 40.0% | |
| AGACTCCTTCCAACAAAGAA+TGG | - | chr1_4:68491867-68491886 | None:intergenic | 40.0% | |
| ATTCTTTGTTGGAAGGAGTC+TGG | + | chr1_4:68491866-68491885 | Msa0180510:intron | 40.0% | |
| TTCTTTGTTGGAAGGAGTCT+GGG | + | chr1_4:68491867-68491886 | Msa0180510:intron | 40.0% | |
| TAAATTTGATGCGAGCACAG+AGG | + | chr1_4:68492062-68492081 | Msa0180510:intron | 40.0% | |
| AAATTTGATGCGAGCACAGA+GGG | + | chr1_4:68492063-68492082 | Msa0180510:intron | 40.0% | |
| GGTAAGGTGAATGTCTATGA+TGG | + | chr1_4:68492131-68492150 | Msa0180510:CDS | 40.0% | |
| TGGCAAGATATTCATGCAAG+AGG | - | chr1_4:68492189-68492208 | None:intergenic | 40.0% | |
| GAAGGATTGTTGTGTCAGTA+GGG | - | chr1_4:68492388-68492407 | None:intergenic | 40.0% | |
| TGAAGGATTGTTGTGTCAGT+AGG | - | chr1_4:68492389-68492408 | None:intergenic | 40.0% | |
| GTATGATAAGCACTTGCAGA+AGG | + | chr1_4:68492540-68492559 | Msa0180510:intron | 40.0% | |
| ! | CAATCCAACACATGGTTTGT+TGG | + | chr1_4:68492834-68492853 | Msa0180510:intron | 40.0% |
| CCCGTGTGGTTATTGAAAAT+AGG | - | chr1_4:68492898-68492917 | None:intergenic | 40.0% | |
| ! | ATTTTCAATAACCACACGGG+AGG | + | chr1_4:68492898-68492917 | Msa0180510:intron | 40.0% |
| ACTTGAACCGATTATCCCTT+CGG | + | chr1_4:68492966-68492985 | Msa0180510:intron | 40.0% | |
| !! | ATTTAAAAATCGGCTCGGAC+CGG | - | chr1_4:68493004-68493023 | None:intergenic | 40.0% |
| !! | CGAGCCGATTTTTAAATCAC+TGG | + | chr1_4:68493007-68493026 | Msa0180510:intron | 40.0% |
| ATCGGTATTCGGAGTGAATT+TGG | - | chr1_4:68493054-68493073 | None:intergenic | 40.0% | |
| CATGGCAACATCTACAAGTT+AGG | + | chr1_4:68493323-68493342 | Msa0180510:intron | 40.0% | |
| TTGTTCATCTACGAGATGCA+TGG | - | chr1_4:68493380-68493399 | None:intergenic | 40.0% | |
| !!! | GTGGGCCTTTGTTTTTTTCT+TGG | + | chr1_4:68493693-68493712 | Msa0180510:intron | 40.0% |
| GATAGGAAACAGGGATCAAA+TGG | - | chr1_4:68493813-68493832 | None:intergenic | 40.0% | |
| CACTAGATAGGATAGGAAAC+AGG | - | chr1_4:68493823-68493842 | None:intergenic | 40.0% | |
| CTGTTTCCTATCCTATCTAG+TGG | + | chr1_4:68493821-68493840 | Msa0180510:intron | 40.0% | |
| AAGCTCGTGAATTCCAAAGT+GGG | - | chr1_4:68493931-68493950 | None:intergenic | 40.0% | |
| TTACTGGAAGACATGCATGA+TGG | - | chr1_4:68493968-68493987 | None:intergenic | 40.0% | |
| AAACTACCGTAACTGCTGAA+TGG | - | chr1_4:68494092-68494111 | None:intergenic | 40.0% | |
| TCGGGTGAAAAAACACAACA+CGG | - | chr1_4:68494178-68494197 | None:intergenic | 40.0% | |
| ! | ACGTACAAGTTCTTTTAGCC+AGG | - | chr1_4:68494249-68494268 | None:intergenic | 40.0% |
| ATGCTTAACCTTCACTGACA+TGG | + | chr1_4:68494408-68494427 | Msa0180510:intron | 40.0% | |
| AGGTATGGAAGCTTGATACA+GGG | - | chr1_4:68494506-68494525 | None:intergenic | 40.0% | |
| GCGATATCTTGAAAAGCGAA+AGG | + | chr1_4:68494612-68494631 | Msa0180510:CDS | 40.0% | |
| ATCTTGAAAAGCGAAAGGAC+AGG | + | chr1_4:68494617-68494636 | Msa0180510:CDS | 40.0% | |
| !! | CTTTTTAGGGGAAGATCGAA+GGG | + | chr1_4:68494747-68494766 | Msa0180510:intron | 40.0% |
| ! | TTGAATTCCCATTTGAGGCA+TGG | - | chr1_4:68494836-68494855 | None:intergenic | 40.0% |
| ACGACTTGAATTCCCATTTG+AGG | - | chr1_4:68494841-68494860 | None:intergenic | 40.0% | |
| ! | TCAATGGGAAGGGTAACTTT+TGG | - | chr1_4:68494930-68494949 | None:intergenic | 40.0% |
| ACTGTTGCAGTAGGGTCTTT+GGG | - | chr1_4:68489821-68489840 | None:intergenic | 45.0% | |
| TACTGTTGCAGTAGGGTCTT+TGG | - | chr1_4:68489822-68489841 | None:intergenic | 45.0% | |
| ! | GATGGGTCAAGAAGTGTGAA+GGG | - | chr1_4:68489867-68489886 | None:intergenic | 45.0% |
| ! | TGATGGGTCAAGAAGTGTGA+AGG | - | chr1_4:68489868-68489887 | None:intergenic | 45.0% |
| !! | GTGTAGTGTTGGTGTAGTGA+GGG | - | chr1_4:68489893-68489912 | None:intergenic | 45.0% |
| !! | AGTGTAGTGTTGGTGTAGTG+AGG | - | chr1_4:68489894-68489913 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1_4:68490398-68490417 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1_4:68490399-68490418 | None:intergenic | 45.0% |
| ! | CTTTGAGAGAAATCACCTGC+TGG | - | chr1_4:68490604-68490623 | None:intergenic | 45.0% |
| ACCTACTGACGATGATACAC+CGG | + | chr1_4:68490634-68490653 | Msa0180510:CDS | 45.0% | |
| GATCCCGAAGATACTGCTTT+GGG | + | chr1_4:68490737-68490756 | Msa0180510:CDS | 45.0% | |
| AGTCCCAAAGCAGTATCTTC+GGG | - | chr1_4:68490743-68490762 | None:intergenic | 45.0% | |
| !! | ACCTGTTTCTGAAAGACCCA+CGG | + | chr1_4:68490778-68490797 | Msa0180510:CDS | 45.0% |
| !! | TTGGCATCATTGGTTTCCGT+GGG | - | chr1_4:68490797-68490816 | None:intergenic | 45.0% |
| GAAAAATGGAGAACAGACCC+GGG | - | chr1_4:68490833-68490852 | None:intergenic | 45.0% | |
| TGTCAGTATCATTCCGGTGT+CGG | - | chr1_4:68490954-68490973 | None:intergenic | 45.0% | |
| AGGTGAATCTGTTTGTGGAG+TGG | + | chr1_4:68491252-68491271 | Msa0180510:intron | 45.0% | |
| GAATCTGTTTGTGGAGTGGA+TGG | + | chr1_4:68491256-68491275 | Msa0180510:intron | 45.0% | |
| ! | TACGGTTTTCTCTTCATGCC+GGG | + | chr1_4:68491441-68491460 | Msa0180510:intron | 45.0% |
| CATTAAACCAACACAGCGCT+TGG | - | chr1_4:68491662-68491681 | None:intergenic | 45.0% | |
| TCTTTGTTGGAAGGAGTCTG+GGG | + | chr1_4:68491868-68491887 | Msa0180510:intron | 45.0% | |
| ATTTGCCCAAATGACCCACT+AGG | - | chr1_4:68492095-68492114 | None:intergenic | 45.0% | |
| ! | TGTCTATGATGGAGTTTCGC+CGG | + | chr1_4:68492142-68492161 | Msa0180510:CDS | 45.0% |
| CGTGCCTGCAAATACAAGTA+TGG | - | chr1_4:68492245-68492264 | None:intergenic | 45.0% | |
| TGAAGGATTATCCTGGGGAA+AGG | - | chr1_4:68492303-68492322 | None:intergenic | 45.0% | |
| ATCCTTCAAGTCGCTCAAAC+AGG | + | chr1_4:68492401-68492420 | Msa0180510:CDS | 45.0% | |
| TACCTGTTTGAGCGACTTGA+AGG | - | chr1_4:68492406-68492425 | None:intergenic | 45.0% | |
| GTCACCAACAAACCATGTGT+TGG | - | chr1_4:68492841-68492860 | None:intergenic | 45.0% | |
| TGGAATACCCTCTGCATTAC+AGG | + | chr1_4:68493502-68493521 | Msa0180510:CDS | 45.0% | |
| GGAATACCCTCTGCATTACA+GGG | + | chr1_4:68493503-68493522 | Msa0180510:CDS | 45.0% | |
| CTTTCTCCCTGTAATGCAGA+GGG | - | chr1_4:68493512-68493531 | None:intergenic | 45.0% | |
| AGCTCGTGAATTCCAAAGTG+GGG | - | chr1_4:68493930-68493949 | None:intergenic | 45.0% | |
| GAAGCTCGTGAATTCCAAAG+TGG | - | chr1_4:68493932-68493951 | None:intergenic | 45.0% | |
| TAACTGCTGAATGGTAGCAC+CGG | - | chr1_4:68494083-68494102 | None:intergenic | 45.0% | |
| GTGCTACCATTCAGCAGTTA+CGG | + | chr1_4:68494083-68494102 | Msa0180510:intron | 45.0% | |
| CGGGTGAAAAAACACAACAC+GGG | - | chr1_4:68494177-68494196 | None:intergenic | 45.0% | |
| ATGTGCACCCGTATATTACC+TGG | + | chr1_4:68494228-68494247 | Msa0180510:intron | 45.0% | |
| CTTAACCTTCACTGACATGG+TGG | + | chr1_4:68494411-68494430 | Msa0180510:intron | 45.0% | |
| TCATACCACCATGTCAGTGA+AGG | - | chr1_4:68494419-68494438 | None:intergenic | 45.0% | |
| GAGGTATGGAAGCTTGATAC+AGG | - | chr1_4:68494507-68494526 | None:intergenic | 45.0% | |
| CCTTCGATCTTCCCCTAAAA+AGG | - | chr1_4:68494749-68494768 | None:intergenic | 45.0% | |
| !! | CCTTTTTAGGGGAAGATCGA+AGG | + | chr1_4:68494746-68494765 | Msa0180510:intron | 45.0% |
| TGAAGCTCCATGCCTCAAAT+GGG | + | chr1_4:68494826-68494845 | Msa0180510:CDS | 45.0% | |
| !! | TTTAATGTAATTAAATTAAT+TGG | + | chr1_4:68490470-68490489 | Msa0180510:intron | 5.0% |
| !!! | AAAAAAAAGTAAAATTTTAA+TGG | + | chr1_4:68491033-68491052 | Msa0180510:intron | 5.0% |
| !! | TTTATTGAATTTAAATTATT+TGG | - | chr1_4:68491967-68491986 | None:intergenic | 5.0% |
| GGAAAGAAATGTGACCGGAG+GGG | - | chr1_4:68489797-68489816 | None:intergenic | 50.0% | |
| GGGAAAGAAATGTGACCGGA+GGG | - | chr1_4:68489798-68489817 | None:intergenic | 50.0% | |
| TGGGGGGAAAGAAATGTGAC+CGG | - | chr1_4:68489802-68489821 | None:intergenic | 50.0% | |
| TGTTGCAGTAGGGTCTTTGG+GGG | - | chr1_4:68489819-68489838 | None:intergenic | 50.0% | |
| CTGTTGCAGTAGGGTCTTTG+GGG | - | chr1_4:68489820-68489839 | None:intergenic | 50.0% | |
| TGGTGTAGTGAGGGAGTGAT+GGG | - | chr1_4:68489884-68489903 | None:intergenic | 50.0% | |
| TTGGTGTAGTGAGGGAGTGA+TGG | - | chr1_4:68489885-68489904 | None:intergenic | 50.0% | |
| GAGAGAGAGTGAGAGAGAGA+GGG | - | chr1_4:68489930-68489949 | None:intergenic | 50.0% | |
| AGAGAGAGAGTGAGAGAGAG+AGG | - | chr1_4:68489931-68489950 | None:intergenic | 50.0% | |
| TTACCCTCTGTTGCCGGAAT+CGG | + | chr1_4:68490025-68490044 | Msa0180510:five_prime_UTR | 50.0% | |
| TTTCCGATTCCGGCAACAGA+GGG | - | chr1_4:68490031-68490050 | None:intergenic | 50.0% | |
| CCGTTCATCGTTTCCGATTC+CGG | - | chr1_4:68490041-68490060 | None:intergenic | 50.0% | |
| CCGGAATCGGAAACGATGAA+CGG | + | chr1_4:68490038-68490057 | Msa0180510:exon | 50.0% | |
| GAATCGGAAACGATGAACGG+CGG | + | chr1_4:68490041-68490060 | Msa0180510:exon | 50.0% | |
| GAGGATGGATCGGAAGGAAA+CGG | - | chr1_4:68490072-68490091 | None:intergenic | 50.0% | |
| GTTAAGAGGTCTGTCGAGGA+TGG | - | chr1_4:68490087-68490106 | None:intergenic | 50.0% | |
| GTTGGTTAAGAGGTCTGTCG+AGG | - | chr1_4:68490091-68490110 | None:intergenic | 50.0% | |
| CTCTCATGCTCCATGGTTTC+CGG | + | chr1_4:68490265-68490284 | Msa0180510:intron | 50.0% | |
| TGGAAGTTGTTCTCAGGAGC+CGG | - | chr1_4:68490287-68490306 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr1_4:68490394-68490413 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1_4:68490400-68490419 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr1_4:68490397-68490416 | Msa0180510:intron | 50.0% | |
| AAGACGACACGTGTTCGTAC+AGG | + | chr1_4:68490542-68490561 | Msa0180510:intron | 50.0% | |
| AGACGACACGTGTTCGTACA+GGG | + | chr1_4:68490543-68490562 | Msa0180510:intron | 50.0% | |
| GCCTTCCTGGAACAAATCAC+AGG | + | chr1_4:68490574-68490593 | Msa0180510:CDS | 50.0% | |
| !! | GCCTGTGATTTGTTCCAGGA+AGG | - | chr1_4:68490578-68490597 | None:intergenic | 50.0% |
| !! | GATCGCCTGTGATTTGTTCC+AGG | - | chr1_4:68490582-68490601 | None:intergenic | 50.0% |
| TCTTCGGGATCCAAAGCCTT+CGG | - | chr1_4:68490728-68490747 | None:intergenic | 50.0% | |
| GGATCCCGAAGATACTGCTT+TGG | + | chr1_4:68490736-68490755 | Msa0180510:CDS | 50.0% | |
| TCCGTGGGTCTTTCAGAAAC+AGG | - | chr1_4:68490782-68490801 | None:intergenic | 50.0% | |
| !! | GTTGGCATCATTGGTTTCCG+TGG | - | chr1_4:68490798-68490817 | None:intergenic | 50.0% |
| ! | TCATTCCGGTGTCGGAGTTA+GGG | - | chr1_4:68490946-68490965 | None:intergenic | 50.0% |
| ! | ATCATTCCGGTGTCGGAGTT+AGG | - | chr1_4:68490947-68490966 | None:intergenic | 50.0% |
| ! | TGCACACCTAGTGGGTCATT+TGG | + | chr1_4:68492086-68492105 | Msa0180510:CDS | 50.0% |
| ! | GCACACCTAGTGGGTCATTT+GGG | + | chr1_4:68492087-68492106 | Msa0180510:CDS | 50.0% |
| TGATGGAGTTTCGCCGGATA+AGG | + | chr1_4:68492148-68492167 | Msa0180510:CDS | 50.0% | |
| TTATCCTGGGGAAAGGAGGA+CGG | - | chr1_4:68492296-68492315 | None:intergenic | 50.0% | |
| AGGATTATCCTGGGGAAAGG+AGG | - | chr1_4:68492300-68492319 | None:intergenic | 50.0% | |
| CCAGGAACCGAAGGGATAAT+CGG | - | chr1_4:68492976-68492995 | None:intergenic | 50.0% | |
| CCTTTCTCCCTGTAATGCAG+AGG | - | chr1_4:68493513-68493532 | None:intergenic | 50.0% | |
| CCTCTGCATTACAGGGAGAA+AGG | + | chr1_4:68493510-68493529 | Msa0180510:CDS | 50.0% | |
| GGGGCTGACATCCAAAACTA+AGG | - | chr1_4:68493911-68493930 | None:intergenic | 50.0% | |
| TTTGGATGTCAGCCCCACTT+TGG | + | chr1_4:68493915-68493934 | Msa0180510:intron | 50.0% | |
| TCGAAGGGCAAGAAACTGAC+TGG | + | chr1_4:68494762-68494781 | Msa0180510:CDS | 50.0% | |
| ! | TTTGAGGCATGGAGCTTCAC+TGG | - | chr1_4:68494825-68494844 | None:intergenic | 50.0% |
| GTGAAGCTCCATGCCTCAAA+TGG | + | chr1_4:68494825-68494844 | Msa0180510:CDS | 50.0% | |
| CTGGAAACTAGAGGCAGTCT+AGG | - | chr1_4:68494888-68494907 | None:intergenic | 50.0% | |
| ! | AGACTGCCTCTAGTTTCCAG+TGG | + | chr1_4:68494888-68494907 | Msa0180510:CDS | 50.0% |
| ! | TGGGAAGGGTAACTTTTGGC+TGG | - | chr1_4:68494926-68494945 | None:intergenic | 50.0% |
| GGGGAAAGAAATGTGACCGG+AGG | - | chr1_4:68489799-68489818 | None:intergenic | 55.0% | |
| GTTGCAGTAGGGTCTTTGGG+GGG | - | chr1_4:68489818-68489837 | None:intergenic | 55.0% | |
| GGGTAAGTGGGACCATGTAC+AGG | - | chr1_4:68490011-68490030 | None:intergenic | 55.0% | |
| TCCCACTTACCCTCTGTTGC+CGG | + | chr1_4:68490019-68490038 | Msa0180510:five_prime_UTR | 55.0% | |
| TCCGGCAACAGAGGGTAAGT+GGG | - | chr1_4:68490023-68490042 | None:intergenic | 55.0% | |
| TTCCGGCAACAGAGGGTAAG+TGG | - | chr1_4:68490024-68490043 | None:intergenic | 55.0% | |
| GTTTCCGATTCCGGCAACAG+AGG | - | chr1_4:68490032-68490051 | None:intergenic | 55.0% | |
| TCTGTCGAGGATGGATCGGA+AGG | - | chr1_4:68490078-68490097 | None:intergenic | 55.0% | |
| GAGGTCTGTCGAGGATGGAT+CGG | - | chr1_4:68490082-68490101 | None:intergenic | 55.0% | |
| CGGAAACCATGGAGCATGAG+AGG | - | chr1_4:68490267-68490286 | None:intergenic | 55.0% | |
| TTCTCAGGAGCCGGAAACCA+TGG | - | chr1_4:68490278-68490297 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr1_4:68490386-68490405 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1_4:68490385-68490404 | Msa0180510:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1_4:68490386-68490405 | Msa0180510:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr1_4:68490392-68490411 | Msa0180510:intron | 55.0% | |
| CAAATCACAGGCGATCCAGC+AGG | + | chr1_4:68490586-68490605 | Msa0180510:CDS | 55.0% | |
| GCCGGTGTATCATCGTCAGT+AGG | - | chr1_4:68490638-68490657 | None:intergenic | 55.0% | |
| ! | GATGATACACCGGCTACCGT+CGG | + | chr1_4:68490644-68490663 | Msa0180510:CDS | 55.0% |
| GCCAACGTTGTTAACCCTCC+CGG | + | chr1_4:68490812-68490831 | Msa0180510:CDS | 55.0% | |
| CCAACGTTGTTAACCCTCCC+GGG | + | chr1_4:68490813-68490832 | Msa0180510:CDS | 55.0% | |
| AATGGAGAACAGACCCGGGA+GGG | - | chr1_4:68490829-68490848 | None:intergenic | 55.0% | |
| AAATGGAGAACAGACCCGGG+AGG | - | chr1_4:68490830-68490849 | None:intergenic | 55.0% | |
| CGAAACCCTAACTCCGACAC+CGG | + | chr1_4:68490938-68490957 | Msa0180510:intron | 55.0% | |
| ! | TTGGAAGGAGTCTGGGGTAG+TGG | + | chr1_4:68491874-68491893 | Msa0180510:intron | 55.0% |
| ! | ACAGAGGGTGCACACCTAGT+GGG | + | chr1_4:68492078-68492097 | Msa0180510:intron | 55.0% |
| GGAGTTTCGCCGGATAAGGT+AGG | + | chr1_4:68492152-68492171 | Msa0180510:intron | 55.0% | |
| CCGATTATCCCTTCGGTTCC+TGG | + | chr1_4:68492973-68492992 | Msa0180510:intron | 55.0% | |
| CGGTTGAACCAGGAACCGAA+GGG | - | chr1_4:68492984-68493003 | None:intergenic | 55.0% | |
| CCTTCGGTTCCTGGTTCAAC+CGG | + | chr1_4:68492982-68493001 | Msa0180510:intron | 55.0% | |
| CACAGCTCGTGATGCTGGTA+GGG | + | chr1_4:68493536-68493555 | Msa0180510:intron | 55.0% | |
| CACAACACGGGTACGAGTAC+TGG | - | chr1_4:68494165-68494184 | None:intergenic | 55.0% | |
| AGGCATGGAGCTTCACTGGA+AGG | - | chr1_4:68494821-68494840 | None:intergenic | 55.0% | |
| ACTAGAGGCAGTCTAGGCTG+TGG | - | chr1_4:68494882-68494901 | None:intergenic | 55.0% | |
| GCTGAGCCACTGGAAACTAG+AGG | - | chr1_4:68494897-68494916 | None:intergenic | 55.0% | |
| !! | CTGGTTTTCAGCTGAGCCAC+TGG | - | chr1_4:68494907-68494926 | None:intergenic | 55.0% |
| GTGTTCGTACAGGGATGCGC+AGG | + | chr1_4:68490552-68490571 | Msa0180510:intron | 60.0% | |
| !! | GTGGTGATGGCGGTGAATGG+CGG | - | chr1_4:68490684-68490703 | None:intergenic | 60.0% |
| !! | GTGGTGGTGATGGCGGTGAA+TGG | - | chr1_4:68490687-68490706 | None:intergenic | 60.0% |
| AAAGCCTTCGGCGGAGGTTG+AGG | - | chr1_4:68490716-68490735 | None:intergenic | 60.0% | |
| TCAACCTCCGCCGAAGGCTT+TGG | + | chr1_4:68490715-68490734 | Msa0180510:CDS | 60.0% | |
| TCGGGATCCAAAGCCTTCGG+CGG | - | chr1_4:68490725-68490744 | None:intergenic | 60.0% | |
| CCCGGGAGGGTTAACAACGT+TGG | - | chr1_4:68490816-68490835 | None:intergenic | 60.0% | |
| ! | CACAGAGGGTGCACACCTAG+TGG | + | chr1_4:68492077-68492096 | Msa0180510:intron | 60.0% |
| ATGTCCGTCCTCCTTTCCCC+AGG | + | chr1_4:68492289-68492308 | Msa0180510:CDS | 60.0% | |
| CCGGTTGAACCAGGAACCGA+AGG | - | chr1_4:68492985-68493004 | None:intergenic | 60.0% | |
| ! | GGAAGCACAGCTCGTGATGC+TGG | + | chr1_4:68493531-68493550 | Msa0180510:CDS | 60.0% |
| GCACAGCTCGTGATGCTGGT+AGG | + | chr1_4:68493535-68493554 | Msa0180510:intron | 60.0% | |
| AGAGGCAGTCTAGGCTGTGG+TGG | - | chr1_4:68494879-68494898 | None:intergenic | 60.0% | |
| ACACCAACGCCGACGGTAGC+CGG | - | chr1_4:68490656-68490675 | None:intergenic | 65.0% | |
| GGAGGAGACACCAACGCCGA+CGG | - | chr1_4:68490663-68490682 | None:intergenic | 65.0% | |
| !! | GTGATGGCGGTGAATGGCGG+AGG | - | chr1_4:68490681-68490700 | None:intergenic | 65.0% |
| !! | GAGGGTGGTGGTGGTGATGG+CGG | - | chr1_4:68490694-68490713 | None:intergenic | 65.0% |
| !! | GAGGAGGGTGGTGGTGGTGA+TGG | - | chr1_4:68490697-68490716 | None:intergenic | 65.0% |
| ! | GAGGTTGAGGAGGGTGGTGG+TGG | - | chr1_4:68490703-68490722 | None:intergenic | 65.0% |
| CCTTCGGCGGAGGTTGAGGA+GGG | - | chr1_4:68490712-68490731 | None:intergenic | 65.0% | |
| GGATCCAAAGCCTTCGGCGG+AGG | - | chr1_4:68490722-68490741 | None:intergenic | 65.0% | |
| AACTGGCGTGACCTCCCGTG+TGG | - | chr1_4:68492912-68492931 | None:intergenic | 65.0% | |
| CAGGGATGCGCAGGCCTTCC+TGG | + | chr1_4:68490561-68490580 | Msa0180510:intron | 70.0% | |
| ! | ACACCGGCTACCGTCGGCGT+TGG | + | chr1_4:68490650-68490669 | Msa0180510:CDS | 70.0% |
| GCGGAGGTTGAGGAGGGTGG+TGG | - | chr1_4:68490706-68490725 | None:intergenic | 70.0% | |
| TCGGCGGAGGTTGAGGAGGG+TGG | - | chr1_4:68490709-68490728 | None:intergenic | 70.0% | |
| CCCTCCTCAACCTCCGCCGA+AGG | + | chr1_4:68490709-68490728 | Msa0180510:CDS | 70.0% | |
| GCCTTCGGCGGAGGTTGAGG+AGG | - | chr1_4:68490713-68490732 | None:intergenic | 70.0% | |
| ! | CGGCTCGGACCGGTTGAACC+AGG | - | chr1_4:68492994-68493013 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 68489786 | 68494998 | 68489786 | ID=Msa0180510;Name=Msa0180510 |
| chr1_4 | mRNA | 68489786 | 68494998 | 68489786 | ID=Msa0180510-mRNA-1;Parent=Msa0180510;Name=Msa0180510-mRNA-1;_AED=0.34;_eAED=0.34;_QI=206|1|0.87|1|0.85|0.75|8|0|336 |
| chr1_4 | exon | 68489786 | 68489911 | 68489786 | ID=Msa0180510-mRNA-1:exon:22638;Parent=Msa0180510-mRNA-1 |
| chr1_4 | exon | 68489973 | 68490173 | 68489973 | ID=Msa0180510-mRNA-1:exon:22639;Parent=Msa0180510-mRNA-1 |
| chr1_4 | exon | 68490564 | 68490834 | 68490564 | ID=Msa0180510-mRNA-1:exon:22640;Parent=Msa0180510-mRNA-1 |
| chr1_4 | exon | 68492082 | 68492169 | 68492082 | ID=Msa0180510-mRNA-1:exon:22641;Parent=Msa0180510-mRNA-1 |
| chr1_4 | exon | 68492260 | 68492422 | 68492260 | ID=Msa0180510-mRNA-1:exon:22642;Parent=Msa0180510-mRNA-1 |
| chr1_4 | exon | 68493493 | 68493552 | 68493493 | ID=Msa0180510-mRNA-1:exon:22643;Parent=Msa0180510-mRNA-1 |
| chr1_4 | exon | 68494575 | 68494638 | 68494575 | ID=Msa0180510-mRNA-1:exon:22644;Parent=Msa0180510-mRNA-1 |
| chr1_4 | exon | 68494755 | 68494998 | 68494755 | ID=Msa0180510-mRNA-1:exon:22645;Parent=Msa0180510-mRNA-1 |
| chr1_4 | five_prime_UTR | 68489786 | 68489911 | 68489786 | ID=Msa0180510-mRNA-1:five_prime_utr;Parent=Msa0180510-mRNA-1 |
| chr1_4 | five_prime_UTR | 68489973 | 68490052 | 68489973 | ID=Msa0180510-mRNA-1:five_prime_utr;Parent=Msa0180510-mRNA-1 |
| chr1_4 | CDS | 68490053 | 68490173 | 68490053 | ID=Msa0180510-mRNA-1:cds;Parent=Msa0180510-mRNA-1 |
| chr1_4 | CDS | 68490564 | 68490834 | 68490564 | ID=Msa0180510-mRNA-1:cds;Parent=Msa0180510-mRNA-1 |
| chr1_4 | CDS | 68492082 | 68492169 | 68492082 | ID=Msa0180510-mRNA-1:cds;Parent=Msa0180510-mRNA-1 |
| chr1_4 | CDS | 68492260 | 68492422 | 68492260 | ID=Msa0180510-mRNA-1:cds;Parent=Msa0180510-mRNA-1 |
| chr1_4 | CDS | 68493493 | 68493552 | 68493493 | ID=Msa0180510-mRNA-1:cds;Parent=Msa0180510-mRNA-1 |
| chr1_4 | CDS | 68494575 | 68494638 | 68494575 | ID=Msa0180510-mRNA-1:cds;Parent=Msa0180510-mRNA-1 |
| chr1_4 | CDS | 68494755 | 68494998 | 68494755 | ID=Msa0180510-mRNA-1:cds;Parent=Msa0180510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
