AlfalfaGEDB | Msa0062490

M. sativa cultivar zhongmu-4 / Msa0062490

KEGG: K14439
GO: GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062490	XP_013466746.1	92.803	792	10	3	1	792	1	745	0.0	1494

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062490	sp\|Q9ZUL5\|CHR19_ARATH	66.015	818	194	6	1	790	1	762	0.0	1078

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062490	A0A072VG70	92.803	792	10	3	1	792	1	745	0.0	1494

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TFs/TRs:

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Gene ID	Type	Classification
Msa0062490	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007440	Msa0062490	0.813229	2.845215e-51	-8.615850e-47
Msa0015090	Msa0062490	0.839824	1.257877e-57	-8.615850e-47
Msa0017320	Msa0062490	0.812474	4.163320e-51	-8.615850e-47
Msa0023330	Msa0062490	0.809901	1.504448e-50	-8.615850e-47
Msa0031180	Msa0062490	0.814553	1.453321e-51	-8.615850e-47
Msa0032470	Msa0062490	0.860237	2.376237e-63	-8.615850e-47
Msa0036140	Msa0062490	0.820029	8.512601e-53	-8.615850e-47
Msa0037880	Msa0062490	0.813314	2.725679e-51	-8.615850e-47
Msa0038870	Msa0062490	0.807656	4.544365e-50	-8.615850e-47
Msa0040620	Msa0062490	0.805698	1.177578e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062490	MtrunA17_Chr1g0163011	92.803	792	10	3	1	792	1	745	0.0	1494
Msa0062490	MtrunA17_Chr4g0066741	33.788	586	256	15	188	766	179	639	3.49e-80	278
Msa0062490	MtrunA17_Chr5g0394201	34.072	587	245	15	197	767	363	823	2.88e-79	276
Msa0062490	MtrunA17_Chr1g0205891	34.694	588	241	16	197	767	376	837	3.23e-79	276
Msa0062490	MtrunA17_Chr5g0403921	31.171	632	285	17	177	777	155	667	4.55e-79	270
Msa0062490	MtrunA17_Chr5g0442141	32.155	594	276	13	197	774	617	1099	2.76e-73	261
Msa0062490	MtrunA17_Chr2g0286291	33.833	600	259	17	172	766	176	642	8.41e-72	254
Msa0062490	MtrunA17_Chr3g0137091	32.715	593	254	14	197	765	289	760	1.61e-71	256
Msa0062490	MtrunA17_Chr3g0095091	32.053	599	270	14	197	779	571	1048	1.68e-70	253
Msa0062490	MtrunA17_Chr4g0052341	32.988	579	257	14	197	761	745	1206	4.94e-70	252

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0062490	AT2G02090.1	66.015	818	194	6	1	790	1	762	0.0	1078
Msa0062490	AT5G19310.2	33.904	584	250	12	197	767	122	582	2.11e-81	278
Msa0062490	AT5G19310.1	33.904	584	250	12	197	767	386	846	1.88e-79	276
Msa0062490	AT3G06010.1	33.276	586	252	12	197	767	403	864	1.06e-75	266
Msa0062490	AT2G13370.1	33.443	610	272	16	197	789	625	1117	3.55e-74	264
Msa0062490	AT2G13370.2	33.443	610	272	16	197	789	625	1117	3.55e-74	264
Msa0062490	AT2G13370.3	33.443	610	272	16	197	789	625	1117	3.55e-74	264
Msa0062490	AT2G25170.1	31.081	592	267	14	196	765	272	744	3.58e-71	255
Msa0062490	AT2G25170.4	31.081	592	267	14	196	765	272	744	3.58e-71	255
Msa0062490	AT2G25170.2	31.081	592	267	14	196	765	289	761	4.24e-71	255

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Find 211 sgRNAs with CRISPR-Local

Find 757 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTAACTGGAGCTGATA+CGG	0.502508	1_2:-21994850	Msa0062490:CDS
AAAGATTCGAGAGGCGGAGG+AGG	0.490488	1_2:+22004155	None:intergenic
AAATACCTGTATACGGTTAC+AGG	0.336163	1_2:+21994747	None:intergenic
AAATCCTGAAGCGTTGGAAG+TGG	0.516959	1_2:-22002287	Msa0062490:CDS
AAATTGGCCACCCTTGAAAT+CGG	0.481077	1_2:-21994342	Msa0062490:three_prime_UTR
AACAGCACGATACTCCTCAA+TGG	0.603233	1_2:+21999408	None:intergenic
AACCAACGCTTGATGCTGAC+AGG	0.467572	1_2:-22002177	Msa0062490:CDS
AAGACTAGTGTACATCAATT+TGG	0.312111	1_2:+21994278	None:intergenic
AAGCTTTGCAGAAGTGTGCC+AGG	0.505741	1_2:-22003827	Msa0062490:CDS
AAGGCGAATTTATAATGATG+AGG	0.615979	1_2:-21999148	Msa0062490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATACTATTCAATCGACGTT+TGG	+	chr1_2:21994204-21994223	None:intergenic	30.0%
TTTCAACTTCTCCAATTTCT+AGG	-	chr1_2:21994270-21994289	Msa0062490:three_prime_UTR	30.0%
TTCAACTTCTCCAATTTCTA+GGG	-	chr1_2:21994271-21994290	Msa0062490:three_prime_UTR	30.0%
CGATAATATCCTTGATGAAT+TGG	-	chr1_2:21994507-21994526	Msa0062490:CDS	30.0%
GAGGTTTATTATAGATGATG+AGG	-	chr1_2:21994585-21994604	Msa0062490:CDS	30.0%
TTCAACTGAAGATGAAATTG+AGG	-	chr1_2:21994660-21994679	Msa0062490:intron	30.0%
TAGAATTGTTACTCAGGTAA+TGG	-	chr1_2:21994828-21994847	Msa0062490:CDS	30.0%
CTTTAACAACGGTTGAAAAT+TGG	+	chr1_2:21994984-21995003	None:intergenic	30.0%
ATAACATGTCAGTATTGTGT+CGG	-	chr1_2:21995245-21995264	Msa0062490:intron	30.0%
AATCCATAATGAAATCACAG+TGG	+	chr1_2:21995527-21995546	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	21994132	22004439	21994132	ID=Msa0062490;Name=Msa0062490
chr1_2	mRNA	21994132	22004439	21994132	ID=Msa0062490-mRNA-1;Parent=Msa0062490;Name=Msa0062490-mRNA-1;_AED=0.14;_eAED=0.14;_QI=175\|0.90\|0.91\|1\|1\|1\|12\|339\|792
chr1_2	exon	21994132	21994633	21994132	ID=Msa0062490-mRNA-1:exon:8164;Parent=Msa0062490-mRNA-1
chr1_2	exon	21994753	21994971	21994753	ID=Msa0062490-mRNA-1:exon:8163;Parent=Msa0062490-mRNA-1
chr1_2	exon	21997018	21997154	21997018	ID=Msa0062490-mRNA-1:exon:8162;Parent=Msa0062490-mRNA-1
chr1_2	exon	21997259	21997336	21997259	ID=Msa0062490-mRNA-1:exon:8161;Parent=Msa0062490-mRNA-1
chr1_2	exon	21999035	21999193	21999035	ID=Msa0062490-mRNA-1:exon:8160;Parent=Msa0062490-mRNA-1
chr1_2	exon	21999306	21999479	21999306	ID=Msa0062490-mRNA-1:exon:8159;Parent=Msa0062490-mRNA-1
chr1_2	exon	22000009	22000329	22000009	ID=Msa0062490-mRNA-1:exon:8158;Parent=Msa0062490-mRNA-1
chr1_2	exon	22002152	22002332	22002152	ID=Msa0062490-mRNA-1:exon:8157;Parent=Msa0062490-mRNA-1
chr1_2	exon	22002417	22002667	22002417	ID=Msa0062490-mRNA-1:exon:8156;Parent=Msa0062490-mRNA-1
chr1_2	exon	22002759	22002799	22002759	ID=Msa0062490-mRNA-1:exon:8155;Parent=Msa0062490-mRNA-1
chr1_2	exon	22003507	22003624	22003507	ID=Msa0062490-mRNA-1:exon:8154;Parent=Msa0062490-mRNA-1
chr1_2	exon	22003728	22004439	22003728	ID=Msa0062490-mRNA-1:exon:8153;Parent=Msa0062490-mRNA-1
chr1_2	five_prime_UTR	22004265	22004439	22004265	ID=Msa0062490-mRNA-1:five_prime_utr;Parent=Msa0062490-mRNA-1
chr1_2	CDS	22003728	22004264	22003728	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	22003507	22003624	22003507	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	22002759	22002799	22002759	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	22002417	22002667	22002417	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	22002152	22002332	22002152	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	22000009	22000329	22000009	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	21999306	21999479	21999306	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	21999035	21999193	21999035	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	21997259	21997336	21997259	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	21997018	21997154	21997018	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	21994753	21994971	21994753	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	CDS	21994471	21994633	21994471	ID=Msa0062490-mRNA-1:cds;Parent=Msa0062490-mRNA-1
chr1_2	three_prime_UTR	21994132	21994470	21994132	ID=Msa0062490-mRNA-1:three_prime_utr;Parent=Msa0062490-mRNA-1

Gene Sequence

>Msa0062490

ATGAAACCCGAGTTATACGAAATCTCCGACGACGAATGGGAGAATCACTCTTTCAAACCCTCACGTGTTTTAAAACGACCTCGTTCTCCTCCTCCGCCTCTCGAATCTTTCTATTATAAACCACCGCAACCACCTCCTCCTCCTCCTTCTTCTGTAACCGTTTCCGACGATGACGATTGCTTTGAAATCACGCGAAATACCGATAATATCCTTGATGAATTGGATGATACTGAATGTGATGCGGCGGCTGCTGCTGCTCCGACGGCGAAACCTGGACGGAGGTTTATTATAGATGATGAGGATGAAGAGGATGCTGGAGGTAGTGGTGGTGGTGTGGATTTGTATGAGATTGATTCAACTGAAGATGAAATTGAGGACGCCATTGAAGACGCAAATGAAGATGATTTGGTTGGTAAAGCTTTGCAGAAGTGTGCCAGGATTTCGGTGGAGTTGAAAGGAGAGTTGTTTGGTTCTTCTGGTGCGGTTTGTGATAGGTATTCGGAAGTTGAATCTTCTTCGGTTAGAATTGTTACTCAGGATGATGTTGATGTTGCTTGTGGTTCTGAGGATTCCAATTTTCAACCGTTGTTAAAGCCCTATCAGCTTGTCGGTGTTAATTTTTTGCTGTTGTTGTATCGGAAGAGGATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACTTGCACAACGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCGTCCTTTTCTGTCCTTCAATATCACGGGTCTGCACGCGCAGCATACTGCAAGGAGTTGAATTCCTTGTCCAAGTCAGGATTGCCTCCTCCATTTAATGTTCTTCTCGTCTGTTATTCACTTTTCGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAGCGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGTTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAATGCGAACCAACGCTTGATGCTGACAGGGACGCCTCTTCAGAATGATCTACATGCTTGTGTAGTAACAGCTACTGCCAGGGAAAACAAAAGGAAAAAACCTGTCAATCTGTCATCTCTATCTGTTGGTTTTGCTGGTGTTAATATAAATATAATTCCTGAAGTAAGCCTTGTAATGAATTTGTTACAGGAGTTATGGTCTATGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACTTAAAAAAGTTACTTAGTGCAGAAGATAAAGATTTAACTAGTCGTATGAAGTCTATATTAGGGCCATTTATTTTACGGCGCCTGAAATCTGATGTGATGCAGCAACTTGTTCGAAAAACACAGAAGGTTCAATATGTCGTAATGGAAAAGCAACAGGAACATGCTTACAAGGAAGCCATTGAGGAGTATCGTGCTGTTTCACAAGCTCGGTTAACAAAATGTTCTGATCTGAACTCAAAAAATGTTCTTGAAGTTCTACCTCGACGGCAAATAAATAATTATTTTGTTCAGTTCCGCAAGATTGCGAACCATCCCTTGTTGATAAGGCGAATTTATAATGATGAGGATGTTGTTTGCTTTGCTAGGAAACTACATCCAATAGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGACTTCTCCATTCACCGGCTTTTACTAAATTATGGTACCAATGATAGAAAGGGGATCCTATCAGATAAACATGTTATGCTTTCTGCGAAATGTCGGGCTTTAGCGGAACTTCTTCCATCACTAAAGAAGAGTGGTCACCGTGTTTTGATCTTTAGTCAATGGACATCAATGCTTGATATATTGGAGTGGGCTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAAAGGCAAACAATAGTCGACACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCAACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACGGTTGTGATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGCCATCGAATTGGTCAAACAAAGCCTGTAACCGTATACAGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAATCCATGGAAGAGATCAAAGAAGGGGACATGCCTGAGAAGACGATGGGAGAGATATTGTCTGCAATTTTGTTAAATTATTGA

Protein sequence

>Msa0062490

MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLESFYYKPPQPPPPPPSSVTVSDDDDCFEITRNTDNILDELDDTECDAAAAAAPTAKPGRRFIIDDEDEEDAGGSGGGVDLYEIDSTEDEIEDAIEDANEDDLVGKALQKCARISVELKGELFGSSGAVCDRYSEVESSSVRIVTQDDVDVACGSEDSNFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKKWCPSFSVLQYHGSARAAYCKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHACVVTATARENKRKKPVNLSSLSVGFAGVNINIIPEVSLVMNLLQELWSMLEFMMPDIFASEDVDLKKLLSAEDKDLTSRMKSILGPFILRRLKSDVMQQLVRKTQKVQYVVMEKQQEHAYKEAIEEYRAVSQARLTKCSDLNSKNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVCFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLNYGTNDRKGILSDKHVMLSAKCRALAELLPSLKKSGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTVYRLVTKGTVDENVYEIAKRKLGLDAAVLESMEEIKEGDMPEKTMGEILSAILLNY*