AlfalfaGEDB | Msa1347760

M. sativa cultivar zhongmu-4 / Msa1347760

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa1347760	0.802180	6.340414e-49	-8.615850e-47
Msa0032470	Msa1347760	0.802898	4.507962e-49	-8.615850e-47
Msa0032590	Msa1347760	0.803863	2.845197e-49	-8.615850e-47
Msa0033110	Msa1347760	0.836259	1.039243e-56	-8.615850e-47
Msa0033260	Msa1347760	0.838407	2.929306e-57	-8.615850e-47
Msa0037570	Msa1347760	-0.804167	2.460364e-49	-8.615850e-47
Msa0044000	Msa1347760	0.810113	1.354683e-50	-8.615850e-47
Msa0044330	Msa1347760	0.816213	6.210287e-52	-8.615850e-47
Msa0072420	Msa1347760	0.828118	1.073565e-54	-8.615850e-47
Msa0079380	Msa1347760	0.800685	1.283720e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 40 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTACATTTAGCCACAC+TGG	0.600095	tig0010114:-701	None:intergenic
AAGACTAGATGAAATAAGCA+TGG	0.625916	tig0010114:-758	None:intergenic
AAGGAAACCAGTTTCACAGA+AGG	0.607572	tig0010114:+298	Msa1347760:three_prime_UTR
ACCCAGGAGTCTTCAACTCA+AGG	0.576772	tig0010114:-125	None:intergenic
ACCCTCACAGTAGCTTCAAA+AGG	0.527695	tig0010114:-440	None:intergenic
ACCTGATCTGCGGAAGACCC+AGG	0.614780	tig0010114:-141	None:intergenic
ACCTTGAGTTGAAGACTCCT+GGG	0.508601	tig0010114:+124	Msa1347760:three_prime_UTR
AGACCAGTGTGGCTAAATGT+AGG	0.525327	tig0010114:+698	Msa1347760:three_prime_UTR
AGCAGCACTAACCTGATCTG+CGG	0.637188	tig0010114:-151	None:intergenic
AGCTCATCAAGTAGTGTAGT+GGG	0.509577	tig0010114:+364	Msa1347760:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAATTTGTCACAAGGAAT+AGG	-	tig0010114:652-671	None:intergenic	30.0%
TGCAATTTCAATTTGTCACA+AGG	-	tig0010114:658-677	None:intergenic	30.0%
TGACAAATTGAAATTGCAGA+TGG	+	tig0010114:660-679	Msa1347760:three_prime_UTR	30.0%
TTAGGAGAGTTTGTGATTAA+GGG	-	tig0010114:733-752	None:intergenic	30.0%
TTTAGGAGAGTTTGTGATTA+AGG	-	tig0010114:734-753	None:intergenic	30.0%
TAATCACAAACTCTCCTAAA+AGG	+	tig0010114:734-753	Msa1347760:three_prime_UTR	30.0%
AAGACTAGATGAAATAAGCA+TGG	-	tig0010114:761-780	None:intergenic	30.0%
TTCAATTTGTCACAAGGAAT+AGG	-	tig0010114:652-671	None:intergenic	30.0%
TGCAATTTCAATTTGTCACA+AGG	-	tig0010114:658-677	None:intergenic	30.0%
TGACAAATTGAAATTGCAGA+TGG	+	tig0010114:660-679	Msa1347760:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0010114	gene	28	831	28	ID=Msa1347760;Name=Msa1347760
tig0010114	mRNA	28	831	28	ID=Msa1347760-mRNA-1;Parent=Msa1347760;Name=Msa1347760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=69\|1\|1\|1\|1\|1\|2\|620\|6
tig0010114	exon	28	161	28	ID=Msa1347760-mRNA-1:exon:6034;Parent=Msa1347760-mRNA-1
tig0010114	exon	256	831	256	ID=Msa1347760-mRNA-1:exon:6035;Parent=Msa1347760-mRNA-1
tig0010114	five_prime_UTR	28	96	28	ID=Msa1347760-mRNA-1:five_prime_utr;Parent=Msa1347760-mRNA-1
tig0010114	CDS	97	117	97	ID=Msa1347760-mRNA-1:cds;Parent=Msa1347760-mRNA-1
tig0010114	three_prime_UTR	118	161	118	ID=Msa1347760-mRNA-1:three_prime_utr;Parent=Msa1347760-mRNA-1
tig0010114	three_prime_UTR	256	831	256	ID=Msa1347760-mRNA-1:three_prime_utr;Parent=Msa1347760-mRNA-1

Gene Sequence	>Msa1347760 ATGAGGATTCTAATGATGTAG
Protein sequence	>Msa1347760 MRILMM*