Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865430 | XP_003618076.1 | 95.787 | 712 | 26 | 1 | 1 | 712 | 1 | 708 | 0.0 | 1407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865430 | sp|P19143|PAL3_PHAVU | 83.427 | 712 | 116 | 1 | 1 | 712 | 1 | 710 | 0.0 | 1229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865430 | G7K0Q0 | 95.787 | 712 | 26 | 1 | 1 | 712 | 1 | 708 | 0.0 | 1407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614960 | Msa0865430 | 0.841628 | 4.234153e-58 | -8.615850e-47 |
| Msa0615200 | Msa0865430 | 0.800429 | 1.447278e-48 | -8.615850e-47 |
| Msa0652590 | Msa0865430 | 0.872768 | 2.466982e-67 | -8.615850e-47 |
| Msa0652600 | Msa0865430 | 0.827484 | 1.525593e-54 | -8.615850e-47 |
| Msa0655370 | Msa0865430 | 0.816570 | 5.166960e-52 | -8.615850e-47 |
| Msa0666950 | Msa0865430 | 0.808754 | 2.651188e-50 | -8.615850e-47 |
| Msa0682110 | Msa0865430 | 0.805234 | 1.472638e-49 | -8.615850e-47 |
| Msa0699170 | Msa0865430 | 0.850535 | 1.595036e-60 | -8.615850e-47 |
| Msa0704560 | Msa0865430 | 0.834801 | 2.429214e-56 | -8.615850e-47 |
| Msa0716620 | Msa0865430 | 0.811185 | 7.946369e-51 | -8.615850e-47 |
| Msa0731580 | Msa0865430 | 0.821743 | 3.432973e-53 | -8.615850e-47 |
| Msa0738680 | Msa0865430 | 0.803924 | 2.763411e-49 | -8.615850e-47 |
| Msa0744550 | Msa0865430 | 0.807756 | 4.326301e-50 | -8.615850e-47 |
| Msa0744560 | Msa0865430 | 0.805777 | 1.132968e-49 | -8.615850e-47 |
| Msa0744710 | Msa0865430 | 0.813466 | 2.524172e-51 | -8.615850e-47 |
| Msa0745160 | Msa0865430 | 0.932902 | 4.231835e-95 | -8.615850e-47 |
| Msa0750830 | Msa0865430 | 0.823827 | 1.123087e-53 | -8.615850e-47 |
| Msa0758520 | Msa0865430 | 0.840398 | 8.907504e-58 | -8.615850e-47 |
| Msa0758570 | Msa0865430 | 0.839119 | 1.916652e-57 | -8.615850e-47 |
| Msa0765140 | Msa0865430 | 0.837570 | 4.808203e-57 | -8.615850e-47 |
| Msa0766170 | Msa0865430 | 0.807217 | 5.630984e-50 | -8.615850e-47 |
| Msa0771810 | Msa0865430 | 0.808709 | 2.711037e-50 | -8.615850e-47 |
| Msa0772350 | Msa0865430 | 0.808070 | 3.710962e-50 | -8.615850e-47 |
| Msa0776660 | Msa0865430 | 0.906718 | 1.099344e-80 | -8.615850e-47 |
| Msa0795320 | Msa0865430 | 0.813553 | 2.414938e-51 | -8.615850e-47 |
| Msa0799120 | Msa0865430 | 0.823194 | 1.579738e-53 | -8.615850e-47 |
| Msa0809920 | Msa0865430 | 0.818488 | 1.909664e-52 | -8.615850e-47 |
| Msa0817190 | Msa0865430 | 0.928688 | 2.026942e-92 | -8.615850e-47 |
| Msa0819150 | Msa0865430 | 0.801867 | 7.351793e-49 | -8.615850e-47 |
| Msa0826240 | Msa0865430 | 0.812804 | 3.525205e-51 | -8.615850e-47 |
| Msa0838870 | Msa0865430 | 0.831356 | 1.748819e-55 | -8.615850e-47 |
| Msa0126430 | Msa0865430 | 0.826052 | 3.352596e-54 | -8.615850e-47 |
| Msa0129290 | Msa0865430 | 0.801948 | 7.076590e-49 | -8.615850e-47 |
| Msa0185040 | Msa0865430 | 0.809621 | 1.728273e-50 | -8.615850e-47 |
| Msa0186240 | Msa0865430 | 0.830521 | 2.803091e-55 | -8.615850e-47 |
| Msa0224870 | Msa0865430 | 0.803197 | 3.911140e-49 | -8.615850e-47 |
| Msa0383900 | Msa0865430 | 0.821597 | 3.710902e-53 | -8.615850e-47 |
| Msa0390200 | Msa0865430 | 0.802558 | 5.300264e-49 | -8.615850e-47 |
| Msa0434300 | Msa0865430 | 0.825166 | 5.436450e-54 | -8.615850e-47 |
| Msa0434400 | Msa0865430 | 0.837666 | 4.543714e-57 | -8.615850e-47 |
| Msa0449490 | Msa0865430 | 0.804753 | 1.856424e-49 | -8.615850e-47 |
| Msa0460600 | Msa0865430 | 0.807331 | 5.324679e-50 | -8.615850e-47 |
| Msa0478080 | Msa0865430 | 0.825450 | 4.656977e-54 | -8.615850e-47 |
| Msa0480540 | Msa0865430 | 0.808009 | 3.822985e-50 | -8.615850e-47 |
| Msa0480550 | Msa0865430 | 0.809502 | 1.833155e-50 | -8.615850e-47 |
| Msa0242720 | Msa0865430 | 0.816389 | 5.671251e-52 | -8.615850e-47 |
| Msa0257760 | Msa0865430 | 0.809521 | 1.816322e-50 | -8.615850e-47 |
| Msa0265650 | Msa0865430 | 0.805434 | 1.337499e-49 | -8.615850e-47 |
| Msa0271700 | Msa0865430 | 0.813704 | 2.236713e-51 | -8.615850e-47 |
| Msa0271720 | Msa0865430 | 0.809372 | 1.954709e-50 | -8.615850e-47 |
| Msa0275730 | Msa0865430 | 0.807996 | 3.847321e-50 | -8.615850e-47 |
| Msa0310190 | Msa0865430 | 0.814165 | 1.769841e-51 | -8.615850e-47 |
| Msa0320170 | Msa0865430 | 0.809071 | 2.268322e-50 | -8.615850e-47 |
| Msa0493870 | Msa0865430 | 0.802670 | 5.024468e-49 | -8.615850e-47 |
| Msa0497690 | Msa0865430 | 0.814962 | 1.179123e-51 | -8.615850e-47 |
| Msa0514750 | Msa0865430 | 0.800492 | 1.405317e-48 | -8.615850e-47 |
| Msa0522140 | Msa0865430 | 0.825663 | 4.144886e-54 | -8.615850e-47 |
| Msa0522170 | Msa0865430 | 0.835603 | 1.524550e-56 | -8.615850e-47 |
| Msa0557240 | Msa0865430 | 0.829677 | 4.503980e-55 | -8.615850e-47 |
| Msa0557250 | Msa0865430 | 0.809539 | 1.799596e-50 | -8.615850e-47 |
| Msa0561110 | Msa0865430 | 0.817016 | 4.103887e-52 | -8.615850e-47 |
| Msa0561830 | Msa0865430 | 0.808299 | 3.315345e-50 | -8.615850e-47 |
| Msa0566530 | Msa0865430 | 0.814693 | 1.352556e-51 | -8.615850e-47 |
| Msa0589000 | Msa0865430 | 0.823785 | 1.148829e-53 | -8.615850e-47 |
| Msa0589060 | Msa0865430 | 0.826472 | 2.662455e-54 | -8.615850e-47 |
| Msa0850480 | Msa0865430 | 0.804332 | 2.272612e-49 | -8.615850e-47 |
| Msa0865430 | Msa0865820 | 0.802046 | 6.755014e-49 | -8.615850e-47 |
| Msa0865430 | Msa0874750 | 0.819023 | 1.443499e-52 | -8.615850e-47 |
| Msa0865430 | Msa0976400 | 0.807057 | 6.087043e-50 | -8.615850e-47 |
| Msa0865430 | Msa1001120 | 0.800456 | 1.429068e-48 | -8.615850e-47 |
| Msa0865430 | Msa1027910 | 0.816913 | 4.326767e-52 | -8.615850e-47 |
| Msa0865430 | Msa1030210 | 0.840112 | 1.058176e-57 | -8.615850e-47 |
| Msa0865430 | Msa1035050 | 0.828790 | 7.389104e-55 | -8.615850e-47 |
| Msa0865430 | Msa1056890 | 0.811958 | 5.396518e-51 | -8.615850e-47 |
| Msa0865430 | Msa1069250 | 0.832090 | 1.152413e-55 | -8.615850e-47 |
| Msa0865430 | Msa1071350 | 0.837273 | 5.728896e-57 | -8.615850e-47 |
| Msa0865430 | Msa1075090 | 0.835632 | 1.498948e-56 | -8.615850e-47 |
| Msa0865430 | Msa1077970 | 0.819300 | 1.248319e-52 | -8.615850e-47 |
| Msa0865430 | Msa1084890 | 0.804428 | 2.170497e-49 | -8.615850e-47 |
| Msa0865430 | Msa1102210 | 0.834061 | 3.725309e-56 | -8.615850e-47 |
| Msa0865430 | Msa1110900 | 0.836021 | 1.194506e-56 | -8.615850e-47 |
| Msa0865430 | Msa1115980 | 0.815235 | 1.025449e-51 | -8.615850e-47 |
| Msa0865430 | Msa1120580 | 0.847672 | 9.974483e-60 | -8.615850e-47 |
| Msa0865430 | Msa1131120 | 0.821128 | 4.759914e-53 | -8.615850e-47 |
| Msa0865430 | Msa1136630 | 0.815689 | 8.127786e-52 | -8.615850e-47 |
| Msa0865430 | Msa1136760 | 0.816312 | 5.900685e-52 | -8.615850e-47 |
| Msa0865430 | Msa1157110 | 0.812693 | 3.729384e-51 | -8.615850e-47 |
| Msa0865430 | Msa1185270 | 0.818814 | 1.610659e-52 | -8.615850e-47 |
| Msa0865430 | Msa1202110 | 0.805201 | 1.496523e-49 | -8.615850e-47 |
| Msa0865430 | Msa1203810 | 0.808661 | 2.775512e-50 | -8.615850e-47 |
| Msa0865430 | Msa1223990 | 0.821032 | 5.010057e-53 | -8.615850e-47 |
| Msa0865430 | Msa1239050 | 0.802200 | 6.281400e-49 | -8.615850e-47 |
| Msa0865430 | Msa1254870 | 0.804503 | 2.094287e-49 | -8.615850e-47 |
| Msa0865430 | Msa1263110 | 0.806503 | 7.971095e-50 | -8.615850e-47 |
| Msa0865430 | Msa1263120 | 0.801363 | 9.329108e-49 | -8.615850e-47 |
| Msa0865430 | Msa1303400 | 0.800843 | 1.191748e-48 | -8.615850e-47 |
| Msa0865430 | Msa1319760 | 0.811867 | 5.646906e-51 | -8.615850e-47 |
| Msa0865430 | Msa1328430 | 0.803015 | 4.265333e-49 | -8.615850e-47 |
| Msa0865430 | Msa1364690 | 0.800440 | 1.439731e-48 | -8.615850e-47 |
| Msa0865430 | Msa1390200 | 0.809075 | 2.263880e-50 | -8.615850e-47 |
| Msa0865430 | Msa1397910 | 0.800342 | 1.507267e-48 | -8.615850e-47 |
| Msa0865430 | Msa1398140 | 0.821541 | 3.823162e-53 | -8.615850e-47 |
| Msa0865430 | Msa1427000 | 0.829513 | 4.936705e-55 | -8.615850e-47 |
| Msa0865430 | Msa1439780 | 0.834314 | 3.220774e-56 | -8.615850e-47 |
| Msa0865430 | Msa1459920 | 0.801329 | 9.480571e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865430 | MtrunA17_Chr5g0448361 | 95.787 | 712 | 26 | 1 | 1 | 712 | 1 | 708 | 0.0 | 1407 |
| Msa0865430 | MtrunA17_Chr7g0264341 | 75.360 | 694 | 169 | 2 | 20 | 712 | 31 | 723 | 0.0 | 1082 |
| Msa0865430 | MtrunA17_Chr7g0264351 | 75.072 | 694 | 171 | 2 | 20 | 712 | 31 | 723 | 0.0 | 1080 |
| Msa0865430 | MtrunA17_Chr7g0264311 | 75.216 | 694 | 170 | 2 | 20 | 712 | 31 | 723 | 0.0 | 1080 |
| Msa0865430 | MtrunA17_Chr1g0181091 | 74.711 | 692 | 173 | 2 | 22 | 712 | 21 | 711 | 0.0 | 1077 |
| Msa0865430 | MtrunA17_Chr1g0199551 | 69.101 | 712 | 214 | 3 | 2 | 712 | 15 | 721 | 0.0 | 1025 |
| Msa0865430 | MtrunA17_Chr2g0326921 | 67.529 | 696 | 220 | 5 | 20 | 712 | 5 | 697 | 0.0 | 949 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865430 | AT2G37040.1 | 71.897 | 701 | 194 | 3 | 14 | 712 | 25 | 724 | 0.0 | 1061 |
| Msa0865430 | AT3G53260.1 | 71.861 | 693 | 193 | 2 | 21 | 712 | 25 | 716 | 0.0 | 1052 |
| Msa0865430 | AT3G10340.1 | 71.552 | 696 | 194 | 4 | 19 | 712 | 13 | 706 | 0.0 | 1020 |
| Msa0865430 | AT5G04230.1 | 67.385 | 696 | 209 | 8 | 21 | 712 | 12 | 693 | 0.0 | 939 |
| Msa0865430 | AT5G04230.2 | 67.000 | 700 | 209 | 9 | 21 | 712 | 12 | 697 | 0.0 | 933 |
Find 174 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAACATTTGAGAAAAT+TGG | 0.164220 | 5_4:-66129515 | Msa0865430:CDS |
| GACAAAGGTACTCCAATTTA+TGG | 0.176537 | 5_4:-66131318 | Msa0865430:CDS |
| GCTCATGTCGTCCACATATT+TGG | 0.218922 | 5_4:-66129825 | Msa0865430:CDS |
| CATTTAGCAGGACTGAATTC+TGG | 0.221247 | 5_4:-66130634 | Msa0865430:CDS |
| TAAACATTTGCAGATTATAT+TGG | 0.237879 | 5_4:+66129212 | None:intergenic |
| AATCGAGGCTGCTGCTATTA+TGG | 0.246073 | 5_4:-66130407 | Msa0865430:CDS |
| CAACGGGTATGTAACATTAA+AGG | 0.253456 | 5_4:+66129607 | None:intergenic |
| TGAAATTCCAAACAGAATTA+AGG | 0.263615 | 5_4:-66129414 | Msa0865430:CDS |
| TCACTTGAAACATCAATTAG+AGG | 0.292963 | 5_4:+66130199 | None:intergenic |
| ACCCTTCTACAAGGCTATTC+AGG | 0.297999 | 5_4:-66130853 | Msa0865430:CDS |
| CTACATTCCTTAATTCTGTT+TGG | 0.299095 | 5_4:+66129407 | None:intergenic |
| CGTTTAGCTATTGCTTCAAT+TGG | 0.305513 | 5_4:-66130115 | Msa0865430:CDS |
| CAGAATTCAGTCCTGCTAAA+TGG | 0.305857 | 5_4:+66130635 | None:intergenic |
| AAACATTTGCAGATTATATT+GGG | 0.308469 | 5_4:+66129213 | None:intergenic |
| AACCAAGATGTGAACTCTTT+GGG | 0.312804 | 5_4:-66129893 | Msa0865430:CDS |
| AGCTATTGACTTGAGGCATT+TGG | 0.314090 | 5_4:-66129789 | Msa0865430:CDS |
| GCAAGATTGGTGTGACATTA+TGG | 0.314561 | 5_4:+66130788 | None:intergenic |
| CAAGAGCAGCTATGCTTGTC+AGG | 0.318836 | 5_4:-66130882 | Msa0865430:CDS |
| GAAGGCCTTGCTCTTGTAAA+TGG | 0.322531 | 5_4:-66130589 | Msa0865430:CDS |
| TATCTCCCTTTCAATCGATT+TGG | 0.337613 | 5_4:+66130240 | None:intergenic |
| CTTGCACTTTCAACTTCCTT+TGG | 0.340425 | 5_4:+66129461 | None:intergenic |
| CAACCAAGATGTGAACTCTT+TGG | 0.345139 | 5_4:-66129894 | Msa0865430:CDS |
| TCACCAAGGCATTCCAGAAT+TGG | 0.348827 | 5_4:+66129254 | None:intergenic |
| AGAAACCCAAGTCTGGATTA+TGG | 0.349211 | 5_4:-66130013 | Msa0865430:CDS |
| TAAAGTACTTGCTTTAGTTT+CGG | 0.350006 | 5_4:+66129581 | None:intergenic |
| CGCGGCACAGTTACCGCTTC+CGG | 0.352856 | 5_4:-66130760 | Msa0865430:CDS |
| TCAAGTGATAAGGCTCTAAA+TGG | 0.353108 | 5_4:-66130184 | Msa0865430:CDS |
| GTGAGGGAAGAACTGAAGAT+AGG | 0.353501 | 5_4:-66129362 | Msa0865430:CDS |
| GTGATATGTCTTGGTGGGGT+GGG | 0.355117 | 5_4:-66131462 | Msa0865430:CDS |
| TTCTGGAATGCCTTGGTGAT+TGG | 0.363836 | 5_4:-66129250 | Msa0865430:CDS |
| GACATTATGGTTGAGGAGTT+TGG | 0.363956 | 5_4:+66130801 | None:intergenic |
| TAACAGTAGCTCACATGTTA+AGG | 0.373118 | 5_4:-66131406 | Msa0865430:CDS |
| AAAGATTGTTGATCCAATTC+TGG | 0.384374 | 5_4:-66129267 | Msa0865430:CDS |
| CCAGTGGTAACACCATAAAT+TGG | 0.386376 | 5_4:+66131306 | None:intergenic |
| CTCTTCAGAAGGAGATGGTT+AGG | 0.390238 | 5_4:-66131242 | Msa0865430:intron |
| AACGGGTATGTAACATTAAA+GGG | 0.397076 | 5_4:+66129608 | None:intergenic |
| CAATCGATTTGGTTGAAAAC+CGG | 0.398842 | 5_4:+66130251 | None:intergenic |
| GTCCACAGATTGAAGTTATC+CGG | 0.407217 | 5_4:-66130270 | Msa0865430:CDS |
| AATTTCCAAGGCACCCCAAT+TGG | 0.407679 | 5_4:-66130157 | Msa0865430:CDS |
| TATGGTGTTACCACTGGCTT+TGG | 0.409618 | 5_4:-66131300 | Msa0865430:CDS |
| ATTTAGCAGGACTGAATTCT+GGG | 0.415023 | 5_4:-66130633 | Msa0865430:CDS |
| TGCTGGTAGAAACCCAAGTC+TGG | 0.415807 | 5_4:-66130020 | Msa0865430:CDS |
| TGCTAAATGGAAAGCTTCCT+TGG | 0.419980 | 5_4:+66130648 | None:intergenic |
| AATTGATGTTTCAAGTGATA+AGG | 0.422344 | 5_4:-66130194 | Msa0865430:CDS |
| TGGATCTGGCGTTGCTTCTA+CGG | 0.429543 | 5_4:-66130557 | Msa0865430:CDS |
| TTGACTCAGACCCTTTGAAC+TGG | 0.433639 | 5_4:-66131560 | Msa0865430:CDS |
| AAGGAAGCTTTCCATTTAGC+AGG | 0.438602 | 5_4:-66130646 | Msa0865430:CDS |
| GCTTTAGTTTCGGCATCAAC+GGG | 0.438751 | 5_4:+66129591 | None:intergenic |
| TGATATGTCTTGGTGGGGTG+GGG | 0.438962 | 5_4:-66131461 | Msa0865430:CDS |
| TCCCTCACAAACCTGTATAG+TGG | 0.440843 | 5_4:+66129377 | None:intergenic |
| CAGCTGAATTCCAGTTCAAA+GGG | 0.442428 | 5_4:+66131550 | None:intergenic |
| CTAGGCTTCTGCAATGGATC+GGG | 0.445249 | 5_4:+66130334 | None:intergenic |
| CTTGTAAATGGCACAGCTGT+TGG | 0.447001 | 5_4:-66130577 | Msa0865430:CDS |
| CCAATTTATGGTGTTACCAC+TGG | 0.450686 | 5_4:-66131306 | Msa0865430:CDS |
| AATGTTTAACAATAATTAGC+AGG | 0.455642 | 5_4:-66129197 | Msa0865430:three_prime_UTR |
| TGCCTGAATAGCCTTGTAGA+AGG | 0.455922 | 5_4:+66130851 | None:intergenic |
| CTCTCAGAGTCTGCAAGGGC+TGG | 0.458441 | 5_4:-66131378 | Msa0865430:CDS |
| AAACTCCAATTGGGGTGCCT+TGG | 0.458485 | 5_4:+66130152 | None:intergenic |
| TATCCATCGAAACTCCAATT+GGG | 0.459183 | 5_4:+66130143 | None:intergenic |
| TGCTTTAGTTTCGGCATCAA+CGG | 0.459822 | 5_4:+66129590 | None:intergenic |
| TGAGGGAAGAACTGAAGATA+GGG | 0.463683 | 5_4:-66129361 | Msa0865430:CDS |
| TACATCGCTGCATTGCTAAC+CGG | 0.464170 | 5_4:-66130718 | Msa0865430:CDS |
| ATAAGATGATGTGTAAATTC+CGG | 0.470007 | 5_4:+66130457 | None:intergenic |
| AAGGTTTAAGTAGAGGGAAG+TGG | 0.471020 | 5_4:+66131691 | None:intergenic |
| AGCTCTGGAATTTCGCCTAC+CGG | 0.473451 | 5_4:+66130699 | None:intergenic |
| TTATCCATCGAAACTCCAAT+TGG | 0.473631 | 5_4:+66130142 | None:intergenic |
| TCTAGGCTTCTGCAATGGAT+CGG | 0.477349 | 5_4:+66130333 | None:intergenic |
| TTTCAACCAAATCGATTGAA+AGG | 0.483319 | 5_4:-66130246 | Msa0865430:CDS |
| AATGGCACAGCTGTTGGATC+TGG | 0.484897 | 5_4:-66130571 | Msa0865430:CDS |
| GCGGTAACTGTGCCGCGTAA+TGG | 0.485660 | 5_4:+66130766 | None:intergenic |
| TCAATGACTTGTATAACAAC+GGG | 0.486075 | 5_4:-66130060 | Msa0865430:CDS |
| GCAGCTGAATTCCAGTTCAA+AGG | 0.486076 | 5_4:+66131549 | None:intergenic |
| AGTGATATGTCTTGGTGGGG+TGG | 0.492325 | 5_4:-66131463 | Msa0865430:CDS |
| CAAACAGAATTAAGGAATGT+AGG | 0.494853 | 5_4:-66129406 | Msa0865430:CDS |
| TTCAACCAAATCGATTGAAA+GGG | 0.496434 | 5_4:-66130245 | Msa0865430:CDS |
| TAAGGCCTCTGAAGTTGCCA+TGG | 0.497043 | 5_4:-66129987 | Msa0865430:CDS |
| TATTGACTTGAGGCATTTGG+AGG | 0.499079 | 5_4:-66129786 | Msa0865430:CDS |
| ACAAGAGCAAGGCCTTCCTT+CGG | 0.501581 | 5_4:+66130595 | None:intergenic |
| ATTTGCAGATTATATTGGGA+TGG | 0.503269 | 5_4:+66129217 | None:intergenic |
| TGAAGTCATGCAAGGGAAGC+CGG | 0.504364 | 5_4:-66130476 | Msa0865430:CDS |
| AGGGTTGCTGACAGGAGAAA+AGG | 0.505444 | 5_4:-66129342 | Msa0865430:CDS |
| ACCCCAAAGAGTTCACATCT+TGG | 0.506444 | 5_4:+66129891 | None:intergenic |
| ACACAAGCTGAAGTTCCATC+CGG | 0.506990 | 5_4:-66130434 | Msa0865430:CDS |
| GTAGGTCATACCCACTATAC+AGG | 0.507329 | 5_4:-66129388 | Msa0865430:CDS |
| CAGCTGCAAATTCACTCAAA+GGG | 0.507593 | 5_4:-66131533 | Msa0865430:CDS |
| CAAAGGAAGTTGAAAGTGCA+AGG | 0.513174 | 5_4:-66129460 | Msa0865430:CDS |
| CTACCAGCAGAAAGATTTGA+GGG | 0.514551 | 5_4:+66130034 | None:intergenic |
| AAACTTGTTTATAATTCTGT+TGG | 0.514588 | 5_4:-66129119 | Msa0865430:three_prime_UTR |
| CTGCCCTCAAATCTTTCTGC+TGG | 0.518283 | 5_4:-66130037 | Msa0865430:CDS |
| TTTGCAGATTATATTGGGAT+GGG | 0.520814 | 5_4:+66129218 | None:intergenic |
| AGGAATTAGATCACCGGAAG+CGG | 0.521923 | 5_4:+66130747 | None:intergenic |
| AGGCGAAATTCCAGAGCTGT+TGG | 0.522740 | 5_4:-66130694 | Msa0865430:CDS |
| CACCCCAATTGGAGTTTCGA+TGG | 0.523805 | 5_4:-66130146 | Msa0865430:CDS |
| CTTTGCTCTTCAGAAGGAGA+TGG | 0.526889 | 5_4:-66131247 | Msa0865430:CDS |
| CTTTGCACATGACTTGTCAC+AGG | 0.528425 | 5_4:+66129929 | None:intergenic |
| CTCTTGTAACTTCTCCTCAA+TGG | 0.530704 | 5_4:-66130297 | Msa0865430:CDS |
| ATTAAAGGGATCATCTATGT+AGG | 0.532990 | 5_4:+66129622 | None:intergenic |
| TCTACCAGCAGAAAGATTTG+AGG | 0.533460 | 5_4:+66130033 | None:intergenic |
| TAAAACCATAATCCAGACTT+GGG | 0.534876 | 5_4:+66130008 | None:intergenic |
| TGCAAGGGTTGCATTTGAGA+AGG | 0.540341 | 5_4:-66129444 | Msa0865430:CDS |
| GGTTAGCAATGCAGCGATGT+AGG | 0.541189 | 5_4:+66130720 | None:intergenic |
| GTGATAAGGCTCTAAATGGT+GGG | 0.542827 | 5_4:-66130180 | Msa0865430:CDS |
| GTGCCGCGTAATGGCAAGAT+TGG | 0.543378 | 5_4:+66130775 | None:intergenic |
| AAGAAGCCAGTGATATGTCT+TGG | 0.546680 | 5_4:-66131471 | Msa0865430:CDS |
| TCAGCTGCAAATTCACTCAA+AGG | 0.547357 | 5_4:-66131534 | Msa0865430:CDS |
| CCCTCACAAACCTGTATAGT+GGG | 0.553390 | 5_4:+66129378 | None:intergenic |
| ATCTGTGGACCGAGCCATTG+AGG | 0.553900 | 5_4:+66130283 | None:intergenic |
| CTGAAGATAGGGTTGCTGAC+AGG | 0.554777 | 5_4:-66129350 | Msa0865430:CDS |
| GTAACTTCTCCTCAATGGCT+CGG | 0.557606 | 5_4:-66130292 | Msa0865430:CDS |
| AGTGATAAGGCTCTAAATGG+TGG | 0.559859 | 5_4:-66130181 | Msa0865430:CDS |
| AAGATAAATATAATCATGTG+TGG | 0.565530 | 5_4:-66129058 | Msa0865430:three_prime_UTR |
| TTAAAACCATAATCCAGACT+TGG | 0.567038 | 5_4:+66130007 | None:intergenic |
| TTGTTCAGTTCTTCTATGTG+AGG | 0.570273 | 5_4:+66131272 | None:intergenic |
| AAAAGAGTCTCTTAATGCCA+AGG | 0.570402 | 5_4:-66130665 | Msa0865430:CDS |
| TTCGAGTTGAAGCCGAAGGA+AGG | 0.571632 | 5_4:-66130607 | Msa0865430:CDS |
| TTCAGAACAATATGCAGCCA+TGG | 0.573180 | 5_4:+66129970 | None:intergenic |
| CTAAATGGTGGGAATTTCCA+AGG | 0.574643 | 5_4:-66130169 | Msa0865430:CDS |
| ACAAGGCTTTGCTCTTCAGA+AGG | 0.576521 | 5_4:-66131253 | Msa0865430:CDS |
| GCAGAGTGCAACCAAATATG+TGG | 0.576865 | 5_4:+66129814 | None:intergenic |
| GGGGACACTAACTATATCTC+AGG | 0.577378 | 5_4:-66131442 | Msa0865430:CDS |
| GTCAATGACTTGTATAACAA+CGG | 0.578417 | 5_4:-66130061 | Msa0865430:CDS |
| TTGAACTCTCAGAGTCTGCA+AGG | 0.579157 | 5_4:-66131383 | Msa0865430:CDS |
| ATTCATATAAAAGCTAAACA+TGG | 0.579316 | 5_4:+66129155 | None:intergenic |
| GCCTGAATAGCCTTGTAGAA+GGG | 0.579660 | 5_4:+66130852 | None:intergenic |
| GCAAGGGTTGCATTTGAGAA+GGG | 0.582509 | 5_4:-66129443 | Msa0865430:CDS |
| GATCCAATTCTGGAATGCCT+TGG | 0.586654 | 5_4:-66129257 | Msa0865430:CDS |
| ACCAAGATGTGAACTCTTTG+GGG | 0.587468 | 5_4:-66129892 | Msa0865430:CDS |
| AAGCCAGTGATATGTCTTGG+TGG | 0.587874 | 5_4:-66131468 | Msa0865430:CDS |
| AATGCCTCAAGTCAATAGCT+TGG | 0.587899 | 5_4:+66129792 | None:intergenic |
| ACCCACTATACAGGTTTGTG+AGG | 0.588985 | 5_4:-66129379 | Msa0865430:CDS |
| AGTTCAAAGGGTCTGAGTCA+AGG | 0.595873 | 5_4:+66131562 | None:intergenic |
| CAGCCTCGATTTGACCCGGA+TGG | 0.598345 | 5_4:+66130419 | None:intergenic |
| ACCCCACCAAGACATATCAC+TGG | 0.599416 | 5_4:+66131465 | None:intergenic |
| TGCAGCCATGGCAACTTCAG+AGG | 0.600459 | 5_4:+66129982 | None:intergenic |
| TTCATATAAAAGCTAAACAT+GGG | 0.605505 | 5_4:+66129156 | None:intergenic |
| CACAAGCTGAAGTTCCATCC+GGG | 0.607305 | 5_4:-66130433 | Msa0865430:CDS |
| AGCCAGTGATATGTCTTGGT+GGG | 0.607306 | 5_4:-66131467 | Msa0865430:CDS |
| GTTCTTCGAGTTGAAGCCGA+AGG | 0.609153 | 5_4:-66130611 | Msa0865430:CDS |
| GTGTTGAAGCTAGCTGCGAG+TGG | 0.610983 | 5_4:-66131356 | Msa0865430:CDS |
| AGCTAGCTGCGAGTGGATCG+CGG | 0.615503 | 5_4:-66131349 | Msa0865430:CDS |
| ACTGAAGTCTCTATTGCCAA+AGG | 0.615652 | 5_4:-66129477 | Msa0865430:CDS |
| AGATAAATATAATCATGTGT+GGG | 0.616087 | 5_4:-66129057 | Msa0865430:three_prime_UTR |
| GTATGACTACGAGGAACAGA+AGG | 0.617578 | 5_4:+66131663 | None:intergenic |
| TTGGTGTGACATTATGGTTG+AGG | 0.620076 | 5_4:+66130794 | None:intergenic |
| AACCGGATAACTTCAATCTG+TGG | 0.620117 | 5_4:+66130268 | None:intergenic |
| ACACCAATCTTGCCATTACG+CGG | 0.623972 | 5_4:-66130778 | Msa0865430:CDS |
| AAAGGATGTTACACCAGATG+AGG | 0.624964 | 5_4:-66129324 | Msa0865430:CDS |
| AAGTACAAACTCTACAAACA+TGG | 0.626200 | 5_4:-66131634 | Msa0865430:exon |
| CTGTGCCATTTACAAGAGCA+AGG | 0.628462 | 5_4:+66130584 | None:intergenic |
| GCTGCTCTTGTTGCTGACGA+AGG | 0.628755 | 5_4:+66130895 | None:intergenic |
| GGACAGAGGAATTAGATCAC+CGG | 0.631506 | 5_4:+66130741 | None:intergenic |
| ATCCATCGAAACTCCAATTG+GGG | 0.640649 | 5_4:+66130144 | None:intergenic |
| AAGAGCAGCTATGCTTGTCA+GGG | 0.640694 | 5_4:-66130881 | Msa0865430:CDS |
| TGAACTCTCAGAGTCTGCAA+GGG | 0.642541 | 5_4:-66131382 | Msa0865430:CDS |
| GCAGCAGCCTCGATTTGACC+CGG | 0.643264 | 5_4:+66130415 | None:intergenic |
| GCCAGTGATATGTCTTGGTG+GGG | 0.645581 | 5_4:-66131466 | Msa0865430:CDS |
| AGGGTTAATACCCTTCTACA+AGG | 0.647865 | 5_4:-66130862 | Msa0865430:CDS |
| GTTCCATCCGGGTCAAATCG+AGG | 0.649287 | 5_4:-66130422 | Msa0865430:CDS |
| TGAGGAAAATTTGCTCAAAG+TGG | 0.651056 | 5_4:-66129666 | Msa0865430:CDS |
| TCTGCCAAGCTATTGACTTG+AGG | 0.654017 | 5_4:-66129796 | Msa0865430:CDS |
| TCACATAGAAGAACTGAACA+AGG | 0.655320 | 5_4:-66131270 | Msa0865430:CDS |
| GACACTAACTATATCTCAGG+TGG | 0.655723 | 5_4:-66131439 | Msa0865430:CDS |
| CCCACTATACAGGTTTGTGA+GGG | 0.659277 | 5_4:-66129378 | Msa0865430:CDS |
| AAAGGAAGTTGAAAGTGCAA+GGG | 0.662059 | 5_4:-66129459 | Msa0865430:CDS |
| GAATGCCTTGGTGATTGGAA+AGG | 0.664169 | 5_4:-66129245 | Msa0865430:CDS |
| TGAGGCAGCACCAAAGCCAG+TGG | 0.666779 | 5_4:+66131290 | None:intergenic |
| GATTTCTGCTTTGAAAACAG+TGG | 0.668764 | 5_4:-66129867 | Msa0865430:CDS |
| TCGCTGCATTGCTAACCGGT+AGG | 0.672083 | 5_4:-66130714 | Msa0865430:CDS |
| CTTTGAATTGTATGACTACG+AGG | 0.673856 | 5_4:+66131654 | None:intergenic |
| GAGAAGTTACAAGAGCGTAA+CGG | 0.674364 | 5_4:+66130305 | None:intergenic |
| TAATCCATTTAGATTCTGTG+AGG | 0.685362 | 5_4:-66129684 | Msa0865430:CDS |
| ATCGCGGAAAACATTGACAA+AGG | 0.691087 | 5_4:-66131333 | Msa0865430:CDS |
| GAACTCCTTTCCAATCACCA+AGG | 0.723073 | 5_4:+66129240 | None:intergenic |
| AATGCAGCGATGTAGGACAG+AGG | 0.731936 | 5_4:+66130727 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTATTCTTATTATTTA+TGG | + | chr5_4:66131206-66131225 | None:intergenic | 10.0% |
| !!! | CTAAAAAACTATTTCTAAAA+GGG | + | chr5_4:66129566-66129585 | None:intergenic | 15.0% |
| !!! | AATACTGATAATTATTCTTT+TGG | - | chr5_4:66129748-66129767 | Msa0865430:CDS | 15.0% |
| !!! | GCTAAAAAACTATTTCTAAA+AGG | + | chr5_4:66129567-66129586 | None:intergenic | 20.0% |
| !!! | TAAATCATTTTTCTTTCACA+AGG | - | chr5_4:66129772-66129791 | Msa0865430:CDS | 20.0% |
| !!! | TTTTTAAACTGTGCAATATT+TGG | - | chr5_4:66129795-66129814 | Msa0865430:CDS | 20.0% |
| !!! | TTTTAAACTGTGCAATATTT+GGG | - | chr5_4:66129796-66129815 | Msa0865430:CDS | 20.0% |
| !! | AAACATTTGCAGATTATATT+GGG | + | chr5_4:66131531-66131550 | None:intergenic | 20.0% |
| !! | TAAACATTTGCAGATTATAT+TGG | + | chr5_4:66131532-66131551 | None:intergenic | 20.0% |
| !! | AATGTTTAACAATAATTAGC+AGG | - | chr5_4:66131544-66131563 | Msa0865430:CDS | 20.0% |
| !! | TTCATATAAAAGCTAAACAT+GGG | + | chr5_4:66131588-66131607 | None:intergenic | 20.0% |
| !! | ATTCATATAAAAGCTAAACA+TGG | + | chr5_4:66131589-66131608 | None:intergenic | 20.0% |
| !!! | AAACTTGTTTATAATTCTGT+TGG | - | chr5_4:66131622-66131641 | Msa0865430:exon | 20.0% |
| !! | AAGATAAATATAATCATGTG+TGG | - | chr5_4:66131683-66131702 | Msa0865430:five_prime_UTR | 20.0% |
| !! | AGATAAATATAATCATGTGT+GGG | - | chr5_4:66131684-66131703 | Msa0865430:five_prime_UTR | 20.0% |
| !! | TACGTTTTACTTCATCAAAA+TGG | + | chr5_4:66129236-66129255 | None:intergenic | 25.0% |
| !! | TTTTGATGAAGTAAAACGTA+TGG | - | chr5_4:66129236-66129255 | Msa0865430:CDS | 25.0% |
| ! | AAATGAGATTGTTAGAGTTT+AGG | - | chr5_4:66129595-66129614 | Msa0865430:CDS | 25.0% |
| ! | ATAAGATGATGTGTAAATTC+CGG | + | chr5_4:66130287-66130306 | None:intergenic | 25.0% |
| !! | ATTATGGAACACATTTTAGA+TGG | - | chr5_4:66130350-66130369 | Msa0865430:CDS | 25.0% |
| !! | AATTGATGTTTCAAGTGATA+AGG | - | chr5_4:66130547-66130566 | Msa0865430:CDS | 25.0% |
| !! | TAAAGTACTTGCTTTAGTTT+CGG | + | chr5_4:66131163-66131182 | None:intergenic | 25.0% |
| ! | TCTTCAACATTTGAGAAAAT+TGG | - | chr5_4:66131226-66131245 | Msa0865430:intron | 25.0% |
| ! | TGAAATTCCAAACAGAATTA+AGG | - | chr5_4:66131327-66131346 | Msa0865430:CDS | 25.0% |
| !!! | GCTTTTAAGGTTTAAGTAGA+GGG | + | chr5_4:66129059-66129078 | None:intergenic | 30.0% |
| AAGTACAAACTCTACAAACA+TGG | - | chr5_4:66129107-66129126 | Msa0865430:three_prime_UTR | 30.0% | |
| !!! | ACATTTTTGGTGTCATTTTG+TGG | + | chr5_4:66129144-66129163 | None:intergenic | 30.0% |
| ! | CAAGTTTGAGCTAACATTTT+TGG | + | chr5_4:66129157-66129176 | None:intergenic | 30.0% |
| GCTTCAATTGCATAACAAAT+AGG | + | chr5_4:66129700-66129719 | None:intergenic | 30.0% | |
| TTTCAACCAAATCGATTGAA+AGG | - | chr5_4:66130495-66130514 | Msa0865430:CDS | 30.0% | |
| TTCAACCAAATCGATTGAAA+GGG | - | chr5_4:66130496-66130515 | Msa0865430:CDS | 30.0% | |
| TCACTTGAAACATCAATTAG+AGG | + | chr5_4:66130545-66130564 | None:intergenic | 30.0% | |
| ! | GTCAATGACTTGTATAACAA+CGG | - | chr5_4:66130680-66130699 | Msa0865430:CDS | 30.0% |
| ! | TCAATGACTTGTATAACAAC+GGG | - | chr5_4:66130681-66130700 | Msa0865430:CDS | 30.0% |
| TAAAACCATAATCCAGACTT+GGG | + | chr5_4:66130736-66130755 | None:intergenic | 30.0% | |
| TTAAAACCATAATCCAGACT+TGG | + | chr5_4:66130737-66130756 | None:intergenic | 30.0% | |
| !! | AAGTCTGGATTATGGTTTTA+AGG | - | chr5_4:66130736-66130755 | Msa0865430:CDS | 30.0% |
| ! | TACTGTAAGCAGAGTTTTTA+AGG | - | chr5_4:66131003-66131022 | Msa0865430:intron | 30.0% |
| TAATCCATTTAGATTCTGTG+AGG | - | chr5_4:66131057-66131076 | Msa0865430:intron | 30.0% | |
| ! | TTTTCCTCACAGAATCTAAA+TGG | + | chr5_4:66131064-66131083 | None:intergenic | 30.0% |
| ATTAAAGGGATCATCTATGT+AGG | + | chr5_4:66131122-66131141 | None:intergenic | 30.0% | |
| AACGGGTATGTAACATTAAA+GGG | + | chr5_4:66131136-66131155 | None:intergenic | 30.0% | |
| CTACATTCCTTAATTCTGTT+TGG | + | chr5_4:66131337-66131356 | None:intergenic | 30.0% | |
| CAAACAGAATTAAGGAATGT+AGG | - | chr5_4:66131335-66131354 | Msa0865430:CDS | 30.0% | |
| !!! | ACTTTTTCAAATTCCTCATC+TGG | + | chr5_4:66131433-66131452 | None:intergenic | 30.0% |
| AAAGATTGTTGATCCAATTC+TGG | - | chr5_4:66131474-66131493 | Msa0865430:CDS | 30.0% | |
| TTTGCAGATTATATTGGGAT+GGG | + | chr5_4:66131526-66131545 | None:intergenic | 30.0% | |
| ATTTGCAGATTATATTGGGA+TGG | + | chr5_4:66131527-66131546 | None:intergenic | 30.0% | |
| !!! | GGCTTTTAAGGTTTAAGTAG+AGG | + | chr5_4:66129060-66129079 | None:intergenic | 35.0% |
| CTTTGAATTGTATGACTACG+AGG | + | chr5_4:66129090-66129109 | None:intergenic | 35.0% | |
| !!! | GGTGTCATTTTGTGGATTAA+TGG | + | chr5_4:66129136-66129155 | None:intergenic | 35.0% |
| TAACAGTAGCTCACATGTTA+AGG | - | chr5_4:66129335-66129354 | Msa0865430:CDS | 35.0% | |
| !! | GACAAAGGTACTCCAATTTA+TGG | - | chr5_4:66129423-66129442 | Msa0865430:CDS | 35.0% |
| TTGTTCAGTTCTTCTATGTG+AGG | + | chr5_4:66129472-66129491 | None:intergenic | 35.0% | |
| TCACATAGAAGAACTGAACA+AGG | - | chr5_4:66129471-66129490 | Msa0865430:CDS | 35.0% | |
| ! | GCATTAAGAGACTCTTTTGA+GGG | + | chr5_4:66130074-66130093 | None:intergenic | 35.0% |
| AAAAGAGTCTCTTAATGCCA+AGG | - | chr5_4:66130076-66130095 | Msa0865430:CDS | 35.0% | |
| ATTTAGCAGGACTGAATTCT+GGG | - | chr5_4:66130108-66130127 | Msa0865430:CDS | 35.0% | |
| ! | TTTTCACTGAAGTCATGCAA+GGG | - | chr5_4:66130258-66130277 | Msa0865430:CDS | 35.0% |
| !! | CAATCGATTTGGTTGAAAAC+CGG | + | chr5_4:66130493-66130512 | None:intergenic | 35.0% |
| TATCTCCCTTTCAATCGATT+TGG | + | chr5_4:66130504-66130523 | None:intergenic | 35.0% | |
| !! | TCAAGTGATAAGGCTCTAAA+TGG | - | chr5_4:66130557-66130576 | Msa0865430:CDS | 35.0% |
| TATCCATCGAAACTCCAATT+GGG | + | chr5_4:66130601-66130620 | None:intergenic | 35.0% | |
| TTATCCATCGAAACTCCAAT+TGG | + | chr5_4:66130602-66130621 | None:intergenic | 35.0% | |
| CGTTTAGCTATTGCTTCAAT+TGG | - | chr5_4:66130626-66130645 | Msa0865430:CDS | 35.0% | |
| AACCAAGATGTGAACTCTTT+GGG | - | chr5_4:66130848-66130867 | Msa0865430:CDS | 35.0% | |
| !! | GATTTCTGCTTTGAAAACAG+TGG | - | chr5_4:66130874-66130893 | Msa0865430:CDS | 35.0% |
| ! | TGAGGAAAATTTGCTCAAAG+TGG | - | chr5_4:66131075-66131094 | Msa0865430:intron | 35.0% |
| CAACGGGTATGTAACATTAA+AGG | + | chr5_4:66131137-66131156 | None:intergenic | 35.0% | |
| ! | TGAGAAAATTGGAGCTTTTG+AGG | - | chr5_4:66131237-66131256 | Msa0865430:intron | 35.0% |
| ! | AAAGGAAGTTGAAAGTGCAA+GGG | - | chr5_4:66131282-66131301 | Msa0865430:CDS | 35.0% |
| CAGCTGAATTCCAGTTCAAA+GGG | + | chr5_4:66129194-66129213 | None:intergenic | 40.0% | |
| TCAGCTGCAAATTCACTCAA+AGG | - | chr5_4:66129207-66129226 | Msa0865430:exon | 40.0% | |
| CAGCTGCAAATTCACTCAAA+GGG | - | chr5_4:66129208-66129227 | Msa0865430:exon | 40.0% | |
| AAGAAGCCAGTGATATGTCT+TGG | - | chr5_4:66129270-66129289 | Msa0865430:CDS | 40.0% | |
| GACACTAACTATATCTCAGG+TGG | - | chr5_4:66129302-66129321 | Msa0865430:CDS | 40.0% | |
| ATCGCGGAAAACATTGACAA+AGG | - | chr5_4:66129408-66129427 | Msa0865430:CDS | 40.0% | |
| CCAGTGGTAACACCATAAAT+TGG | + | chr5_4:66129438-66129457 | None:intergenic | 40.0% | |
| !! | CCAATTTATGGTGTTACCAC+TGG | - | chr5_4:66129435-66129454 | Msa0865430:CDS | 40.0% |
| AGGGTTAATACCCTTCTACA+AGG | - | chr5_4:66129879-66129898 | Msa0865430:CDS | 40.0% | |
| GACATTATGGTTGAGGAGTT+TGG | + | chr5_4:66129943-66129962 | None:intergenic | 40.0% | |
| TTGGTGTGACATTATGGTTG+AGG | + | chr5_4:66129950-66129969 | None:intergenic | 40.0% | |
| GCAAGATTGGTGTGACATTA+TGG | + | chr5_4:66129956-66129975 | None:intergenic | 40.0% | |
| ! | GGCATTAAGAGACTCTTTTG+AGG | + | chr5_4:66130075-66130094 | None:intergenic | 40.0% |
| TGCTAAATGGAAAGCTTCCT+TGG | + | chr5_4:66130096-66130115 | None:intergenic | 40.0% | |
| AAGGAAGCTTTCCATTTAGC+AGG | - | chr5_4:66130095-66130114 | Msa0865430:CDS | 40.0% | |
| CAGAATTCAGTCCTGCTAAA+TGG | + | chr5_4:66130109-66130128 | None:intergenic | 40.0% | |
| CATTTAGCAGGACTGAATTC+TGG | - | chr5_4:66130107-66130126 | Msa0865430:CDS | 40.0% | |
| ! | GTTTTCACTGAAGTCATGCA+AGG | - | chr5_4:66130257-66130276 | Msa0865430:CDS | 40.0% |
| ! | TCTTTTCTAGGCTTCTGCAA+TGG | + | chr5_4:66130416-66130435 | None:intergenic | 40.0% |
| ! | GAGAAGTTACAAGAGCGTAA+CGG | + | chr5_4:66130439-66130458 | None:intergenic | 40.0% |
| CTCTTGTAACTTCTCCTCAA+TGG | - | chr5_4:66130444-66130463 | Msa0865430:CDS | 40.0% | |
| GTCCACAGATTGAAGTTATC+CGG | - | chr5_4:66130471-66130490 | Msa0865430:CDS | 40.0% | |
| AACCGGATAACTTCAATCTG+TGG | + | chr5_4:66130476-66130495 | None:intergenic | 40.0% | |
| !! | AGTGATAAGGCTCTAAATGG+TGG | - | chr5_4:66130560-66130579 | Msa0865430:CDS | 40.0% |
| !! | GTGATAAGGCTCTAAATGGT+GGG | - | chr5_4:66130561-66130580 | Msa0865430:CDS | 40.0% |
| ! | CTAAATGGTGGGAATTTCCA+AGG | - | chr5_4:66130572-66130591 | Msa0865430:CDS | 40.0% |
| ATCCATCGAAACTCCAATTG+GGG | + | chr5_4:66130600-66130619 | None:intergenic | 40.0% | |
| CTACCAGCAGAAAGATTTGA+GGG | + | chr5_4:66130710-66130729 | None:intergenic | 40.0% | |
| TCTACCAGCAGAAAGATTTG+AGG | + | chr5_4:66130711-66130730 | None:intergenic | 40.0% | |
| AGAAACCCAAGTCTGGATTA+TGG | - | chr5_4:66130728-66130747 | Msa0865430:CDS | 40.0% | |
| TTCAGAACAATATGCAGCCA+TGG | + | chr5_4:66130774-66130793 | None:intergenic | 40.0% | |
| CAACCAAGATGTGAACTCTT+TGG | - | chr5_4:66130847-66130866 | Msa0865430:CDS | 40.0% | |
| ACCAAGATGTGAACTCTTTG+GGG | - | chr5_4:66130849-66130868 | Msa0865430:CDS | 40.0% | |
| AATGCCTCAAGTCAATAGCT+TGG | + | chr5_4:66130952-66130971 | None:intergenic | 40.0% | |
| !! | AGCTATTGACTTGAGGCATT+TGG | - | chr5_4:66130952-66130971 | Msa0865430:intron | 40.0% |
| !! | TATTGACTTGAGGCATTTGG+AGG | - | chr5_4:66130955-66130974 | Msa0865430:intron | 40.0% |
| ! | TGCTTTAGTTTCGGCATCAA+CGG | + | chr5_4:66131154-66131173 | None:intergenic | 40.0% |
| ACTGAAGTCTCTATTGCCAA+AGG | - | chr5_4:66131264-66131283 | Msa0865430:CDS | 40.0% | |
| CTTGCACTTTCAACTTCCTT+TGG | + | chr5_4:66131283-66131302 | None:intergenic | 40.0% | |
| ! | CAAAGGAAGTTGAAAGTGCA+AGG | - | chr5_4:66131281-66131300 | Msa0865430:CDS | 40.0% |
| TGAGGGAAGAACTGAAGATA+GGG | - | chr5_4:66131380-66131399 | Msa0865430:CDS | 40.0% | |
| AAAGGATGTTACACCAGATG+AGG | - | chr5_4:66131417-66131436 | Msa0865430:CDS | 40.0% | |
| ! | CGAGGAACAGAAGGCTTTTA+AGG | + | chr5_4:66129072-66129091 | None:intergenic | 45.0% |
| GTATGACTACGAGGAACAGA+AGG | + | chr5_4:66129081-66129100 | None:intergenic | 45.0% | |
| AGTTCAAAGGGTCTGAGTCA+AGG | + | chr5_4:66129182-66129201 | None:intergenic | 45.0% | |
| TTGACTCAGACCCTTTGAAC+TGG | - | chr5_4:66129181-66129200 | Msa0865430:three_prime_UTR | 45.0% | |
| GCAGCTGAATTCCAGTTCAA+AGG | + | chr5_4:66129195-66129214 | None:intergenic | 45.0% | |
| AAGCCAGTGATATGTCTTGG+TGG | - | chr5_4:66129273-66129292 | Msa0865430:CDS | 45.0% | |
| AGCCAGTGATATGTCTTGGT+GGG | - | chr5_4:66129274-66129293 | Msa0865430:CDS | 45.0% | |
| GGGGACACTAACTATATCTC+AGG | - | chr5_4:66129299-66129318 | Msa0865430:CDS | 45.0% | |
| TTGAACTCTCAGAGTCTGCA+AGG | - | chr5_4:66129358-66129377 | Msa0865430:CDS | 45.0% | |
| TGAACTCTCAGAGTCTGCAA+GGG | - | chr5_4:66129359-66129378 | Msa0865430:CDS | 45.0% | |
| !! | TATGGTGTTACCACTGGCTT+TGG | - | chr5_4:66129441-66129460 | Msa0865430:CDS | 45.0% |
| ACAAGGCTTTGCTCTTCAGA+AGG | - | chr5_4:66129488-66129507 | Msa0865430:CDS | 45.0% | |
| CTTTGCTCTTCAGAAGGAGA+TGG | - | chr5_4:66129494-66129513 | Msa0865430:CDS | 45.0% | |
| CTCTTCAGAAGGAGATGGTT+AGG | - | chr5_4:66129499-66129518 | Msa0865430:CDS | 45.0% | |
| CAGAAGGAGATGGTTAGGTA+AGG | - | chr5_4:66129504-66129523 | Msa0865430:CDS | 45.0% | |
| AAGAGCAGCTATGCTTGTCA+GGG | - | chr5_4:66129860-66129879 | Msa0865430:CDS | 45.0% | |
| ACCCTTCTACAAGGCTATTC+AGG | - | chr5_4:66129888-66129907 | Msa0865430:CDS | 45.0% | |
| !! | GCCTGAATAGCCTTGTAGAA+GGG | + | chr5_4:66129892-66129911 | None:intergenic | 45.0% |
| !! | TGCCTGAATAGCCTTGTAGA+AGG | + | chr5_4:66129893-66129912 | None:intergenic | 45.0% |
| ACACCAATCTTGCCATTACG+CGG | - | chr5_4:66129963-66129982 | Msa0865430:CDS | 45.0% | |
| AGGAATTAGATCACCGGAAG+CGG | + | chr5_4:66129997-66130016 | None:intergenic | 45.0% | |
| GGACAGAGGAATTAGATCAC+CGG | + | chr5_4:66130003-66130022 | None:intergenic | 45.0% | |
| TACATCGCTGCATTGCTAAC+CGG | - | chr5_4:66130023-66130042 | Msa0865430:CDS | 45.0% | |
| GAAGGCCTTGCTCTTGTAAA+TGG | - | chr5_4:66130152-66130171 | Msa0865430:CDS | 45.0% | |
| !! | CTGTGCCATTTACAAGAGCA+AGG | + | chr5_4:66130160-66130179 | None:intergenic | 45.0% |
| CTTGTAAATGGCACAGCTGT+TGG | - | chr5_4:66130164-66130183 | Msa0865430:CDS | 45.0% | |
| ! | TGCTTCTACGGTTCTTTTCG+AGG | - | chr5_4:66130196-66130215 | Msa0865430:CDS | 45.0% |
| ACACAAGCTGAAGTTCCATC+CGG | - | chr5_4:66130307-66130326 | Msa0865430:CDS | 45.0% | |
| AATCGAGGCTGCTGCTATTA+TGG | - | chr5_4:66130334-66130353 | Msa0865430:CDS | 45.0% | |
| TCTAGGCTTCTGCAATGGAT+CGG | + | chr5_4:66130411-66130430 | None:intergenic | 45.0% | |
| ! | AGAGCGTAACGGTCTTTTCT+AGG | + | chr5_4:66130428-66130447 | None:intergenic | 45.0% |
| GTAACTTCTCCTCAATGGCT+CGG | - | chr5_4:66130449-66130468 | Msa0865430:CDS | 45.0% | |
| ! | AATTTCCAAGGCACCCCAAT+TGG | - | chr5_4:66130584-66130603 | Msa0865430:CDS | 45.0% |
| ! | CTTTGCACATGACTTGTCAC+AGG | + | chr5_4:66130815-66130834 | None:intergenic | 45.0% |
| ACCCCAAAGAGTTCACATCT+TGG | + | chr5_4:66130853-66130872 | None:intergenic | 45.0% | |
| GCTCATGTCGTCCACATATT+TGG | - | chr5_4:66130916-66130935 | Msa0865430:CDS | 45.0% | |
| GCAGAGTGCAACCAAATATG+TGG | + | chr5_4:66130930-66130949 | None:intergenic | 45.0% | |
| !! | TCTGCCAAGCTATTGACTTG+AGG | - | chr5_4:66130945-66130964 | Msa0865430:CDS | 45.0% |
| ! | GCTTTAGTTTCGGCATCAAC+GGG | + | chr5_4:66131153-66131172 | None:intergenic | 45.0% |
| TGCAAGGGTTGCATTTGAGA+AGG | - | chr5_4:66131297-66131316 | Msa0865430:CDS | 45.0% | |
| GCAAGGGTTGCATTTGAGAA+GGG | - | chr5_4:66131298-66131317 | Msa0865430:CDS | 45.0% | |
| GTAGGTCATACCCACTATAC+AGG | - | chr5_4:66131353-66131372 | Msa0865430:CDS | 45.0% | |
| ACCCACTATACAGGTTTGTG+AGG | - | chr5_4:66131362-66131381 | Msa0865430:CDS | 45.0% | |
| CCCTCACAAACCTGTATAGT+GGG | + | chr5_4:66131366-66131385 | None:intergenic | 45.0% | |
| CCCACTATACAGGTTTGTGA+GGG | - | chr5_4:66131363-66131382 | Msa0865430:CDS | 45.0% | |
| TCCCTCACAAACCTGTATAG+TGG | + | chr5_4:66131367-66131386 | None:intergenic | 45.0% | |
| GTGAGGGAAGAACTGAAGAT+AGG | - | chr5_4:66131379-66131398 | Msa0865430:CDS | 45.0% | |
| !! | GATCCAATTCTGGAATGCCT+TGG | - | chr5_4:66131484-66131503 | Msa0865430:CDS | 45.0% |
| ! | TCACCAAGGCATTCCAGAAT+TGG | + | chr5_4:66131490-66131509 | None:intergenic | 45.0% |
| !! | TTCTGGAATGCCTTGGTGAT+TGG | - | chr5_4:66131491-66131510 | Msa0865430:CDS | 45.0% |
| ! | GAATGCCTTGGTGATTGGAA+AGG | - | chr5_4:66131496-66131515 | Msa0865430:CDS | 45.0% |
| GAACTCCTTTCCAATCACCA+AGG | + | chr5_4:66131504-66131523 | None:intergenic | 45.0% | |
| GCCAGTGATATGTCTTGGTG+GGG | - | chr5_4:66129275-66129294 | Msa0865430:CDS | 50.0% | |
| ACCCCACCAAGACATATCAC+TGG | + | chr5_4:66129279-66129298 | None:intergenic | 50.0% | |
| AGTGATATGTCTTGGTGGGG+TGG | - | chr5_4:66129278-66129297 | Msa0865430:CDS | 50.0% | |
| GTGATATGTCTTGGTGGGGT+GGG | - | chr5_4:66129279-66129298 | Msa0865430:CDS | 50.0% | |
| TGATATGTCTTGGTGGGGTG+GGG | - | chr5_4:66129280-66129299 | Msa0865430:CDS | 50.0% | |
| CAAGAGCAGCTATGCTTGTC+AGG | - | chr5_4:66129859-66129878 | Msa0865430:CDS | 50.0% | |
| AATGCAGCGATGTAGGACAG+AGG | + | chr5_4:66130017-66130036 | None:intergenic | 50.0% | |
| GGTTAGCAATGCAGCGATGT+AGG | + | chr5_4:66130024-66130043 | None:intergenic | 50.0% | |
| !! | AGCTCTGGAATTTCGCCTAC+CGG | + | chr5_4:66130045-66130064 | None:intergenic | 50.0% |
| AGGCGAAATTCCAGAGCTGT+TGG | - | chr5_4:66130047-66130066 | Msa0865430:CDS | 50.0% | |
| !! | TTTTGAGGGTCCAACAGCTC+TGG | + | chr5_4:66130060-66130079 | None:intergenic | 50.0% |
| !! | GTTCTTCGAGTTGAAGCCGA+AGG | - | chr5_4:66130130-66130149 | Msa0865430:CDS | 50.0% |
| !! | TTCGAGTTGAAGCCGAAGGA+AGG | - | chr5_4:66130134-66130153 | Msa0865430:CDS | 50.0% |
| ACAAGAGCAAGGCCTTCCTT+CGG | + | chr5_4:66130149-66130168 | None:intergenic | 50.0% | |
| AATGGCACAGCTGTTGGATC+TGG | - | chr5_4:66130170-66130189 | Msa0865430:CDS | 50.0% | |
| TGGATCTGGCGTTGCTTCTA+CGG | - | chr5_4:66130184-66130203 | Msa0865430:CDS | 50.0% | |
| TGAAGTCATGCAAGGGAAGC+CGG | - | chr5_4:66130265-66130284 | Msa0865430:CDS | 50.0% | |
| CACAAGCTGAAGTTCCATCC+GGG | - | chr5_4:66130308-66130327 | Msa0865430:CDS | 50.0% | |
| CTAGGCTTCTGCAATGGATC+GGG | + | chr5_4:66130410-66130429 | None:intergenic | 50.0% | |
| ! | AAACTCCAATTGGGGTGCCT+TGG | + | chr5_4:66130592-66130611 | None:intergenic | 50.0% |
| CACCCCAATTGGAGTTTCGA+TGG | - | chr5_4:66130595-66130614 | Msa0865430:CDS | 50.0% | |
| CTGCCCTCAAATCTTTCTGC+TGG | - | chr5_4:66130704-66130723 | Msa0865430:CDS | 50.0% | |
| TGCTGGTAGAAACCCAAGTC+TGG | - | chr5_4:66130721-66130740 | Msa0865430:CDS | 50.0% | |
| !! | TAAGGCCTCTGAAGTTGCCA+TGG | - | chr5_4:66130754-66130773 | Msa0865430:CDS | 50.0% |
| CTGAAGATAGGGTTGCTGAC+AGG | - | chr5_4:66131391-66131410 | Msa0865430:CDS | 50.0% | |
| AGGGTTGCTGACAGGAGAAA+AGG | - | chr5_4:66131399-66131418 | Msa0865430:CDS | 50.0% | |
| GTGTTGAAGCTAGCTGCGAG+TGG | - | chr5_4:66129385-66129404 | Msa0865430:CDS | 55.0% | |
| GCTGCTCTTGTTGCTGACGA+AGG | + | chr5_4:66129849-66129868 | None:intergenic | 55.0% | |
| GTGCCGCGTAATGGCAAGAT+TGG | + | chr5_4:66129969-66129988 | None:intergenic | 55.0% | |
| TCGCTGCATTGCTAACCGGT+AGG | - | chr5_4:66130027-66130046 | Msa0865430:CDS | 55.0% | |
| GTTCCATCCGGGTCAAATCG+AGG | - | chr5_4:66130319-66130338 | Msa0865430:CDS | 55.0% | |
| ATCTGTGGACCGAGCCATTG+AGG | + | chr5_4:66130461-66130480 | None:intergenic | 55.0% | |
| TGCAGCCATGGCAACTTCAG+AGG | + | chr5_4:66130762-66130781 | None:intergenic | 55.0% | |
| CTCTCAGAGTCTGCAAGGGC+TGG | - | chr5_4:66129363-66129382 | Msa0865430:CDS | 60.0% | |
| AGCTAGCTGCGAGTGGATCG+CGG | - | chr5_4:66129392-66129411 | Msa0865430:CDS | 60.0% | |
| TGAGGCAGCACCAAAGCCAG+TGG | + | chr5_4:66129454-66129473 | None:intergenic | 60.0% | |
| GCGGTAACTGTGCCGCGTAA+TGG | + | chr5_4:66129978-66129997 | None:intergenic | 60.0% | |
| ! | CAGCCTCGATTTGACCCGGA+TGG | + | chr5_4:66130325-66130344 | None:intergenic | 60.0% |
| ! | GCAGCAGCCTCGATTTGACC+CGG | + | chr5_4:66130329-66130348 | None:intergenic | 60.0% |
| CGCGGCACAGTTACCGCTTC+CGG | - | chr5_4:66129981-66130000 | Msa0865430:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 66129051 | 66131712 | 66129051 | ID=Msa0865430;Name=Msa0865430 |
| chr5_4 | mRNA | 66129051 | 66131712 | 66129051 | ID=Msa0865430-mRNA-1;Parent=Msa0865430;Name=Msa0865430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75|1|1|1|1|1|2|175|712 |
| chr5_4 | exon | 66129051 | 66130969 | 66129051 | ID=Msa0865430-mRNA-1:exon:20928;Parent=Msa0865430-mRNA-1 |
| chr5_4 | exon | 66131243 | 66131712 | 66131243 | ID=Msa0865430-mRNA-1:exon:20927;Parent=Msa0865430-mRNA-1 |
| chr5_4 | five_prime_UTR | 66131638 | 66131712 | 66131638 | ID=Msa0865430-mRNA-1:five_prime_utr;Parent=Msa0865430-mRNA-1 |
| chr5_4 | CDS | 66131243 | 66131637 | 66131243 | ID=Msa0865430-mRNA-1:cds;Parent=Msa0865430-mRNA-1 |
| chr5_4 | CDS | 66129226 | 66130969 | 66129226 | ID=Msa0865430-mRNA-1:cds;Parent=Msa0865430-mRNA-1 |
| chr5_4 | three_prime_UTR | 66129051 | 66129225 | 66129051 | ID=Msa0865430-mRNA-1:three_prime_utr;Parent=Msa0865430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
