Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0745160 | XP_003618076.1 | 95.787 | 712 | 26 | 1 | 1 | 712 | 1 | 708 | 0.0 | 1407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0745160 | sp|P19143|PAL3_PHAVU | 83.427 | 712 | 116 | 1 | 1 | 712 | 1 | 710 | 0.0 | 1229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0745160 | G7K0Q0 | 95.787 | 712 | 26 | 1 | 1 | 712 | 1 | 708 | 0.0 | 1407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031410 | Msa0745160 | 0.811324 | 7.410747e-51 | -8.615850e-47 |
| Msa0070120 | Msa0745160 | 0.801428 | 9.047461e-49 | -8.615850e-47 |
| Msa0105140 | Msa0745160 | -0.802312 | 5.955622e-49 | -8.615850e-47 |
| Msa0107830 | Msa0745160 | 0.826584 | 2.503259e-54 | -8.615850e-47 |
| Msa0117650 | Msa0745160 | 0.817220 | 3.692733e-52 | -8.615850e-47 |
| Msa0614960 | Msa0745160 | 0.861798 | 7.961897e-64 | -8.615850e-47 |
| Msa0622800 | Msa0745160 | -0.808252 | 3.393815e-50 | -8.615850e-47 |
| Msa0629140 | Msa0745160 | 0.832631 | 8.464706e-56 | -8.615850e-47 |
| Msa0637590 | Msa0745160 | 0.818368 | 2.033319e-52 | -8.615850e-47 |
| Msa0652590 | Msa0745160 | 0.884064 | 2.638374e-71 | -8.615850e-47 |
| Msa0652600 | Msa0745160 | 0.811496 | 6.802264e-51 | -8.615850e-47 |
| Msa0655370 | Msa0745160 | 0.847123 | 1.411301e-59 | -8.615850e-47 |
| Msa0666950 | Msa0745160 | 0.821636 | 3.634264e-53 | -8.615850e-47 |
| Msa0675590 | Msa0745160 | 0.819878 | 9.214820e-53 | -8.615850e-47 |
| Msa0694320 | Msa0745160 | 0.807090 | 5.989317e-50 | -8.615850e-47 |
| Msa0699170 | Msa0745160 | 0.873702 | 1.197963e-67 | -8.615850e-47 |
| Msa0704560 | Msa0745160 | 0.848228 | 7.007907e-60 | -8.615850e-47 |
| Msa0716620 | Msa0745160 | 0.830122 | 3.508751e-55 | -8.615850e-47 |
| Msa0728570 | Msa0745160 | 0.805478 | 1.309126e-49 | -8.615850e-47 |
| Msa0731580 | Msa0745160 | 0.843699 | 1.192984e-58 | -8.615850e-47 |
| Msa0736560 | Msa0745160 | 0.807126 | 5.886025e-50 | -8.615850e-47 |
| Msa0738680 | Msa0745160 | 0.816543 | 5.238096e-52 | -8.615850e-47 |
| Msa0744550 | Msa0745160 | 0.820570 | 6.396838e-53 | -8.615850e-47 |
| Msa0744560 | Msa0745160 | 0.800742 | 1.249746e-48 | -8.615850e-47 |
| Msa0744710 | Msa0745160 | 0.833782 | 4.376673e-56 | -8.615850e-47 |
| Msa0745160 | Msa0750790 | 0.838198 | 3.316386e-57 | -8.615850e-47 |
| Msa0745160 | Msa0750830 | 0.830794 | 2.402168e-55 | -8.615850e-47 |
| Msa0745160 | Msa0758520 | 0.851885 | 6.630662e-61 | -8.615850e-47 |
| Msa0745160 | Msa0758570 | 0.841831 | 3.742250e-58 | -8.615850e-47 |
| Msa0745160 | Msa0765140 | 0.802021 | 6.834503e-49 | -8.615850e-47 |
| Msa0745160 | Msa0771810 | 0.832868 | 7.394431e-56 | -8.615850e-47 |
| Msa0745160 | Msa0772350 | 0.822231 | 2.646409e-53 | -8.615850e-47 |
| Msa0745160 | Msa0776660 | 0.923588 | 2.178969e-89 | -8.615850e-47 |
| Msa0745160 | Msa0793270 | 0.800792 | 1.220550e-48 | -8.615850e-47 |
| Msa0745160 | Msa0794200 | 0.837683 | 4.498722e-57 | -8.615850e-47 |
| Msa0745160 | Msa0794240 | 0.810238 | 1.273324e-50 | -8.615850e-47 |
| Msa0745160 | Msa0795320 | 0.819996 | 8.660261e-53 | -8.615850e-47 |
| Msa0745160 | Msa0799110 | 0.807149 | 5.819669e-50 | -8.615850e-47 |
| Msa0745160 | Msa0799120 | 0.830587 | 2.700280e-55 | -8.615850e-47 |
| Msa0745160 | Msa0809920 | 0.837523 | 4.944023e-57 | -8.615850e-47 |
| Msa0745160 | Msa0812050 | 0.802171 | 6.368598e-49 | -8.615850e-47 |
| Msa0745160 | Msa0813610 | 0.809782 | 1.595732e-50 | -8.615850e-47 |
| Msa0745160 | Msa0817190 | 0.987044 | 7.366499e-169 | -8.615850e-47 |
| Msa0745160 | Msa0819150 | 0.815422 | 9.320745e-52 | -8.615850e-47 |
| Msa0745160 | Msa0826240 | 0.835443 | 1.672771e-56 | -8.615850e-47 |
| Msa0745160 | Msa0838870 | 0.847858 | 8.863869e-60 | -8.615850e-47 |
| Msa0745160 | Msa0850480 | 0.825087 | 5.675340e-54 | -8.615850e-47 |
| Msa0745160 | Msa0854230 | 0.810592 | 1.067468e-50 | -8.615850e-47 |
| Msa0745160 | Msa0865430 | 0.932902 | 4.231835e-95 | -8.615850e-47 |
| Msa0745160 | Msa0874750 | 0.839671 | 1.378365e-57 | -8.615850e-47 |
| Msa0745160 | Msa0910560 | 0.814705 | 1.344598e-51 | -8.615850e-47 |
| Msa0745160 | Msa0921790 | 0.802867 | 4.576327e-49 | -8.615850e-47 |
| Msa0745160 | Msa0925940 | 0.806216 | 9.159971e-50 | -8.615850e-47 |
| Msa0745160 | Msa0964400 | -0.806972 | 6.345774e-50 | -8.615850e-47 |
| Msa0745160 | Msa0976400 | 0.822940 | 1.810097e-53 | -8.615850e-47 |
| Msa0745160 | Msa0985380 | 0.824138 | 9.496425e-54 | -8.615850e-47 |
| Msa0745160 | Msa1001120 | 0.810056 | 1.393110e-50 | -8.615850e-47 |
| Msa0745160 | Msa1015360 | 0.809893 | 1.510626e-50 | -8.615850e-47 |
| Msa0745160 | Msa1016100 | 0.807570 | 4.738339e-50 | -8.615850e-47 |
| Msa0745160 | Msa1027910 | 0.823990 | 1.028745e-53 | -8.615850e-47 |
| Msa0745160 | Msa1030210 | 0.849701 | 2.731144e-60 | -8.615850e-47 |
| Msa0745160 | Msa1035050 | 0.838856 | 2.242782e-57 | -8.615850e-47 |
| Msa0745160 | Msa1040330 | 0.814116 | 1.814609e-51 | -8.615850e-47 |
| Msa0745160 | Msa1056890 | 0.814054 | 1.872637e-51 | -8.615850e-47 |
| Msa0745160 | Msa1061840 | 0.806482 | 8.051512e-50 | -8.615850e-47 |
| Msa0745160 | Msa1069250 | 0.846554 | 2.019664e-59 | -8.615850e-47 |
| Msa0745160 | Msa1071350 | 0.833659 | 4.696362e-56 | -8.615850e-47 |
| Msa0745160 | Msa1075090 | 0.848990 | 4.307655e-60 | -8.615850e-47 |
| Msa0745160 | Msa1077970 | 0.823862 | 1.101821e-53 | -8.615850e-47 |
| Msa0745160 | Msa1078120 | -0.805787 | 1.127980e-49 | -8.615850e-47 |
| Msa0745160 | Msa1083660 | -0.801134 | 1.038950e-48 | -8.615850e-47 |
| Msa0745160 | Msa1084890 | 0.828021 | 1.133311e-54 | -8.615850e-47 |
| Msa0745160 | Msa1085820 | 0.803210 | 3.885630e-49 | -8.615850e-47 |
| Msa0745160 | Msa1102210 | 0.828953 | 6.747612e-55 | -8.615850e-47 |
| Msa0745160 | Msa1110900 | 0.845959 | 2.932942e-59 | -8.615850e-47 |
| Msa0745160 | Msa1115980 | 0.828658 | 7.955547e-55 | -8.615850e-47 |
| Msa0745160 | Msa1120580 | 0.836882 | 7.212586e-57 | -8.615850e-47 |
| Msa0745160 | Msa1120960 | 0.810876 | 9.270170e-51 | -8.615850e-47 |
| Msa0745160 | Msa1131120 | 0.821905 | 3.148531e-53 | -8.615850e-47 |
| Msa0745160 | Msa1136630 | 0.816551 | 5.216784e-52 | -8.615850e-47 |
| Msa0745160 | Msa1136760 | 0.806166 | 9.385995e-50 | -8.615850e-47 |
| Msa0745160 | Msa1157110 | 0.804245 | 2.369937e-49 | -8.615850e-47 |
| Msa0745160 | Msa1162430 | 0.818134 | 2.296462e-52 | -8.615850e-47 |
| Msa0745160 | Msa1163840 | 0.808654 | 2.784647e-50 | -8.615850e-47 |
| Msa0745160 | Msa1165660 | 0.807310 | 5.381801e-50 | -8.615850e-47 |
| Msa0745160 | Msa1174280 | 0.801640 | 8.184843e-49 | -8.615850e-47 |
| Msa0745160 | Msa1185270 | 0.806473 | 8.087940e-50 | -8.615850e-47 |
| Msa0745160 | Msa1186150 | 0.809017 | 2.328806e-50 | -8.615850e-47 |
| Msa0745160 | Msa1191270 | 0.802620 | 5.144548e-49 | -8.615850e-47 |
| Msa0745160 | Msa1211610 | 0.812884 | 3.387227e-51 | -8.615850e-47 |
| Msa0745160 | Msa1223990 | 0.820324 | 7.282821e-53 | -8.615850e-47 |
| Msa0745160 | Msa1239050 | 0.811582 | 6.514162e-51 | -8.615850e-47 |
| Msa0745160 | Msa1263110 | 0.808174 | 3.526435e-50 | -8.615850e-47 |
| Msa0745160 | Msa1265940 | 0.825603 | 4.283475e-54 | -8.615850e-47 |
| Msa0745160 | Msa1299480 | 0.805921 | 1.057057e-49 | -8.615850e-47 |
| Msa0745160 | Msa1303400 | 0.852613 | 4.116245e-61 | -8.615850e-47 |
| Msa0745160 | Msa1319760 | 0.831128 | 1.989144e-55 | -8.615850e-47 |
| Msa0745160 | Msa1320160 | 0.827109 | 1.876233e-54 | -8.615850e-47 |
| Msa0745160 | Msa1349420 | 0.801340 | 9.429495e-49 | -8.615850e-47 |
| Msa0745160 | Msa1364690 | 0.822723 | 2.033817e-53 | -8.615850e-47 |
| Msa0745160 | Msa1390200 | 0.824944 | 6.132530e-54 | -8.615850e-47 |
| Msa0745160 | Msa1397910 | 0.802218 | 6.225700e-49 | -8.615850e-47 |
| Msa0745160 | Msa1398120 | 0.803108 | 4.080275e-49 | -8.615850e-47 |
| Msa0745160 | Msa1405040 | -0.803433 | 3.494320e-49 | -8.615850e-47 |
| Msa0745160 | Msa1427000 | 0.847367 | 1.209192e-59 | -8.615850e-47 |
| Msa0745160 | Msa1431020 | 0.820197 | 7.790681e-53 | -8.615850e-47 |
| Msa0745160 | Msa1437590 | 0.820618 | 6.237665e-53 | -8.615850e-47 |
| Msa0745160 | Msa1439780 | 0.846817 | 1.711476e-59 | -8.615850e-47 |
| Msa0745160 | Msa1443990 | 0.800344 | 1.505879e-48 | -8.615850e-47 |
| Msa0745160 | Msa1455200 | 0.808208 | 3.467697e-50 | -8.615850e-47 |
| Msa0745160 | Msa1463640 | 0.814667 | 1.370909e-51 | -8.615850e-47 |
| Msa0126430 | Msa0745160 | 0.842880 | 1.972800e-58 | -8.615850e-47 |
| Msa0129290 | Msa0745160 | 0.820183 | 7.845886e-53 | -8.615850e-47 |
| Msa0143640 | Msa0745160 | 0.806699 | 7.244854e-50 | -8.615850e-47 |
| Msa0185040 | Msa0745160 | 0.805478 | 1.309160e-49 | -8.615850e-47 |
| Msa0186240 | Msa0745160 | 0.833498 | 5.152126e-56 | -8.615850e-47 |
| Msa0224870 | Msa0745160 | 0.800022 | 1.751209e-48 | -8.615850e-47 |
| Msa0370360 | Msa0745160 | 0.800654 | 1.302370e-48 | -8.615850e-47 |
| Msa0383900 | Msa0745160 | 0.811483 | 6.845945e-51 | -8.615850e-47 |
| Msa0388070 | Msa0745160 | 0.813358 | 2.665321e-51 | -8.615850e-47 |
| Msa0390200 | Msa0745160 | 0.829676 | 4.505206e-55 | -8.615850e-47 |
| Msa0420890 | Msa0745160 | 0.802007 | 6.879883e-49 | -8.615850e-47 |
| Msa0422650 | Msa0745160 | 0.829720 | 4.396156e-55 | -8.615850e-47 |
| Msa0422740 | Msa0745160 | 0.845584 | 3.707237e-59 | -8.615850e-47 |
| Msa0422960 | Msa0745160 | 0.831341 | 1.763112e-55 | -8.615850e-47 |
| Msa0433090 | Msa0745160 | 0.813045 | 3.122492e-51 | -8.615850e-47 |
| Msa0434300 | Msa0745160 | 0.837297 | 5.646961e-57 | -8.615850e-47 |
| Msa0434400 | Msa0745160 | 0.829899 | 3.975207e-55 | -8.615850e-47 |
| Msa0438520 | Msa0745160 | 0.816508 | 5.333966e-52 | -8.615850e-47 |
| Msa0460600 | Msa0745160 | 0.816426 | 5.563755e-52 | -8.615850e-47 |
| Msa0478080 | Msa0745160 | 0.840653 | 7.637403e-58 | -8.615850e-47 |
| Msa0480540 | Msa0745160 | 0.824413 | 8.182352e-54 | -8.615850e-47 |
| Msa0480550 | Msa0745160 | 0.804583 | 2.014660e-49 | -8.615850e-47 |
| Msa0242720 | Msa0745160 | 0.830799 | 2.396177e-55 | -8.615850e-47 |
| Msa0257760 | Msa0745160 | 0.816234 | 6.143284e-52 | -8.615850e-47 |
| Msa0271700 | Msa0745160 | 0.844021 | 9.785553e-59 | -8.615850e-47 |
| Msa0271720 | Msa0745160 | 0.842097 | 3.183901e-58 | -8.615850e-47 |
| Msa0275730 | Msa0745160 | 0.826057 | 3.342548e-54 | -8.615850e-47 |
| Msa0281000 | Msa0745160 | 0.808541 | 2.944916e-50 | -8.615850e-47 |
| Msa0285580 | Msa0745160 | 0.816914 | 4.326406e-52 | -8.615850e-47 |
| Msa0310190 | Msa0745160 | 0.814580 | 1.432937e-51 | -8.615850e-47 |
| Msa0320170 | Msa0745160 | 0.847316 | 1.248833e-59 | -8.615850e-47 |
| Msa0324810 | Msa0745160 | 0.805879 | 1.078702e-49 | -8.615850e-47 |
| Msa0336550 | Msa0745160 | -0.812584 | 3.938842e-51 | -8.615850e-47 |
| Msa0357510 | Msa0745160 | 0.800930 | 1.144063e-48 | -8.615850e-47 |
| Msa0357560 | Msa0745160 | 0.801770 | 7.696183e-49 | -8.615850e-47 |
| Msa0493870 | Msa0745160 | 0.815346 | 9.690184e-52 | -8.615850e-47 |
| Msa0497690 | Msa0745160 | 0.814952 | 1.185205e-51 | -8.615850e-47 |
| Msa0510870 | Msa0745160 | 0.803146 | 4.006330e-49 | -8.615850e-47 |
| Msa0512280 | Msa0745160 | 0.820402 | 6.990923e-53 | -8.615850e-47 |
| Msa0514750 | Msa0745160 | 0.842452 | 2.564290e-58 | -8.615850e-47 |
| Msa0522140 | Msa0745160 | 0.841880 | 3.633580e-58 | -8.615850e-47 |
| Msa0522170 | Msa0745160 | 0.837878 | 4.006955e-57 | -8.615850e-47 |
| Msa0524710 | Msa0745160 | 0.821234 | 4.500752e-53 | -8.615850e-47 |
| Msa0557240 | Msa0745160 | 0.879769 | 9.509481e-70 | -8.615850e-47 |
| Msa0557250 | Msa0745160 | 0.834284 | 3.276102e-56 | -8.615850e-47 |
| Msa0561110 | Msa0745160 | 0.804404 | 2.196166e-49 | -8.615850e-47 |
| Msa0561830 | Msa0745160 | 0.840741 | 7.243082e-58 | -8.615850e-47 |
| Msa0566530 | Msa0745160 | 0.836295 | 1.017789e-56 | -8.615850e-47 |
| Msa0589000 | Msa0745160 | 0.840225 | 9.887060e-58 | -8.615850e-47 |
| Msa0589060 | Msa0745160 | 0.847807 | 9.154066e-60 | -8.615850e-47 |
| Msa0597820 | Msa0745160 | 0.825233 | 5.241462e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0745160 | MtrunA17_Chr5g0448361 | 95.787 | 712 | 26 | 1 | 1 | 712 | 1 | 708 | 0.0 | 1407 |
| Msa0745160 | MtrunA17_Chr7g0264341 | 75.360 | 694 | 169 | 2 | 20 | 712 | 31 | 723 | 0.0 | 1082 |
| Msa0745160 | MtrunA17_Chr7g0264351 | 75.072 | 694 | 171 | 2 | 20 | 712 | 31 | 723 | 0.0 | 1080 |
| Msa0745160 | MtrunA17_Chr7g0264311 | 75.216 | 694 | 170 | 2 | 20 | 712 | 31 | 723 | 0.0 | 1080 |
| Msa0745160 | MtrunA17_Chr1g0181091 | 74.711 | 692 | 173 | 2 | 22 | 712 | 21 | 711 | 0.0 | 1077 |
| Msa0745160 | MtrunA17_Chr1g0199551 | 69.101 | 712 | 214 | 3 | 2 | 712 | 15 | 721 | 0.0 | 1025 |
| Msa0745160 | MtrunA17_Chr2g0326921 | 67.529 | 696 | 220 | 5 | 20 | 712 | 5 | 697 | 0.0 | 949 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0745160 | AT2G37040.1 | 71.897 | 701 | 194 | 3 | 14 | 712 | 25 | 724 | 0.0 | 1061 |
| Msa0745160 | AT3G53260.1 | 71.861 | 693 | 193 | 2 | 21 | 712 | 25 | 716 | 0.0 | 1052 |
| Msa0745160 | AT3G10340.1 | 71.552 | 696 | 194 | 4 | 19 | 712 | 13 | 706 | 0.0 | 1020 |
| Msa0745160 | AT5G04230.1 | 67.385 | 696 | 209 | 8 | 21 | 712 | 12 | 693 | 0.0 | 939 |
| Msa0745160 | AT5G04230.2 | 67.000 | 700 | 209 | 9 | 21 | 712 | 12 | 697 | 0.0 | 933 |
Find 173 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGTATTCTTATTATTTA+TGG | 0.081070 | 5_1:-66267286 | None:intergenic |
| TCTTCAACATTTGAGAAAAT+TGG | 0.164220 | 5_1:+66267309 | Msa0745160:CDS |
| GACAAAGGTACTCCAATTTA+TGG | 0.176537 | 5_1:+66265506 | Msa0745160:CDS |
| GCTCATGTCGTCCACATATT+TGG | 0.218922 | 5_1:+66266999 | Msa0745160:CDS |
| CATTTAGCAGGACTGAATTC+TGG | 0.221247 | 5_1:+66266190 | Msa0745160:CDS |
| TAAACATTTGCAGATTATAT+TGG | 0.237879 | 5_1:-66267612 | None:intergenic |
| AATCGAGGCTGCTGCTATTA+TGG | 0.246073 | 5_1:+66266417 | Msa0745160:CDS |
| CAACGGGTATGTAACATTAA+AGG | 0.253456 | 5_1:-66267217 | None:intergenic |
| TGAAATTCCAAACAGAATTA+AGG | 0.263615 | 5_1:+66267410 | Msa0745160:CDS |
| TCACTTGAAACATCAATTAG+AGG | 0.292963 | 5_1:-66266625 | None:intergenic |
| ACCCTTCTACAAGGCTATTC+AGG | 0.297999 | 5_1:+66265971 | Msa0745160:CDS |
| CTACATTCCTTAATTCTGTT+TGG | 0.299095 | 5_1:-66267417 | None:intergenic |
| CGTTTAGCTATTGCTTCAAT+TGG | 0.305513 | 5_1:+66266709 | Msa0745160:CDS |
| CAGAATTCAGTCCTGCTAAA+TGG | 0.305857 | 5_1:-66266189 | None:intergenic |
| AAACATTTGCAGATTATATT+GGG | 0.308469 | 5_1:-66267611 | None:intergenic |
| AACCAAGATGTGAACTCTTT+GGG | 0.312804 | 5_1:+66266931 | Msa0745160:CDS |
| AGCTATTGACTTGAGGCATT+TGG | 0.314090 | 5_1:+66267035 | Msa0745160:CDS |
| GCAAGATTGGTGTGACATTA+TGG | 0.314561 | 5_1:-66266036 | None:intergenic |
| CAAGAGCAGCTATGCTTGTC+AGG | 0.318836 | 5_1:+66265942 | Msa0745160:CDS |
| GAAGGCCTTGCTCTTGTAAA+TGG | 0.322531 | 5_1:+66266235 | Msa0745160:CDS |
| TATCTCCCTTTCAATCGATT+TGG | 0.337613 | 5_1:-66266584 | None:intergenic |
| CTTGCACTTTCAACTTCCTT+TGG | 0.340425 | 5_1:-66267363 | None:intergenic |
| CAACCAAGATGTGAACTCTT+TGG | 0.345139 | 5_1:+66266930 | Msa0745160:CDS |
| TCACCAAGGCATTCCAGAAT+TGG | 0.348827 | 5_1:-66267570 | None:intergenic |
| AGAAACCCAAGTCTGGATTA+TGG | 0.349211 | 5_1:+66266811 | Msa0745160:CDS |
| TAAAGTACTTGCTTTAGTTT+CGG | 0.350006 | 5_1:-66267243 | None:intergenic |
| CGCGGCACAGTTACCGCTTC+CGG | 0.352856 | 5_1:+66266064 | Msa0745160:CDS |
| TCAAGTGATAAGGCTCTAAA+TGG | 0.353108 | 5_1:+66266640 | Msa0745160:CDS |
| GTGAGGGAAGAACTGAAGAT+AGG | 0.353501 | 5_1:+66267462 | Msa0745160:CDS |
| TTCTGGAATGCCTTGGTGAT+TGG | 0.363836 | 5_1:+66267574 | Msa0745160:CDS |
| GACATTATGGTTGAGGAGTT+TGG | 0.363956 | 5_1:-66266023 | None:intergenic |
| TAACAGTAGCTCACATGTTA+AGG | 0.382489 | 5_1:+66265418 | Msa0745160:CDS |
| AAAGATTGTTGATCCAATTC+TGG | 0.384374 | 5_1:+66267557 | Msa0745160:CDS |
| CCAGTGGTAACACCATAAAT+TGG | 0.386376 | 5_1:-66265518 | None:intergenic |
| CTCTTCAGAAGGAGATGGTT+AGG | 0.390238 | 5_1:+66265582 | Msa0745160:CDS |
| AACGGGTATGTAACATTAAA+GGG | 0.397076 | 5_1:-66267216 | None:intergenic |
| CAATCGATTTGGTTGAAAAC+CGG | 0.398842 | 5_1:-66266573 | None:intergenic |
| GTCCACAGATTGAAGTTATC+CGG | 0.407217 | 5_1:+66266554 | Msa0745160:CDS |
| AATTTCCAAGGCACCCCAAT+TGG | 0.407679 | 5_1:+66266667 | Msa0745160:CDS |
| TATGGTGTTACCACTGGCTT+TGG | 0.409618 | 5_1:+66265524 | Msa0745160:CDS |
| ATTTAGCAGGACTGAATTCT+GGG | 0.415023 | 5_1:+66266191 | Msa0745160:CDS |
| TGCTGGTAGAAACCCAAGTC+TGG | 0.415807 | 5_1:+66266804 | Msa0745160:CDS |
| TGCTAAATGGAAAGCTTCCT+TGG | 0.419980 | 5_1:-66266176 | None:intergenic |
| AATTGATGTTTCAAGTGATA+AGG | 0.422344 | 5_1:+66266630 | Msa0745160:CDS |
| TGGATCTGGCGTTGCTTCTA+CGG | 0.429543 | 5_1:+66266267 | Msa0745160:CDS |
| GTGATATGTCTTGGTGGGGT+GGG | 0.429754 | 5_1:+66265362 | Msa0745160:CDS |
| TTGACTCAGACCCTTTGAAC+TGG | 0.433639 | 5_1:+66265264 | Msa0745160:CDS |
| AAGGAAGCTTTCCATTTAGC+AGG | 0.438602 | 5_1:+66266178 | Msa0745160:CDS |
| GCTTTAGTTTCGGCATCAAC+GGG | 0.438751 | 5_1:-66267233 | None:intergenic |
| TCCCTCACAAACCTGTATAG+TGG | 0.440843 | 5_1:-66267447 | None:intergenic |
| CAGCTGAATTCCAGTTCAAA+GGG | 0.442428 | 5_1:-66265274 | None:intergenic |
| CTAGGCTTCTGCAATGGATC+GGG | 0.445249 | 5_1:-66266490 | None:intergenic |
| CTTGTAAATGGCACAGCTGT+TGG | 0.447001 | 5_1:+66266247 | Msa0745160:CDS |
| CCAATTTATGGTGTTACCAC+TGG | 0.450686 | 5_1:+66265518 | Msa0745160:CDS |
| AATGTTTAACAATAATTAGC+AGG | 0.455642 | 5_1:+66267627 | Msa0745160:three_prime_UTR |
| TGCCTGAATAGCCTTGTAGA+AGG | 0.455922 | 5_1:-66265973 | None:intergenic |
| AAACTCCAATTGGGGTGCCT+TGG | 0.458485 | 5_1:-66266672 | None:intergenic |
| TATCCATCGAAACTCCAATT+GGG | 0.459183 | 5_1:-66266681 | None:intergenic |
| TGCTTTAGTTTCGGCATCAA+CGG | 0.459822 | 5_1:-66267234 | None:intergenic |
| CTCTCAGAGTCTGCAAGGGC+TGG | 0.463068 | 5_1:+66265446 | Msa0745160:CDS |
| TGAGGGAAGAACTGAAGATA+GGG | 0.463683 | 5_1:+66267463 | Msa0745160:CDS |
| TACATCGCTGCATTGCTAAC+CGG | 0.464170 | 5_1:+66266106 | Msa0745160:CDS |
| ATAAGATGATGTGTAAATTC+CGG | 0.470007 | 5_1:-66266367 | None:intergenic |
| AAGGTTTAAGTAGAGGGAAG+TGG | 0.471020 | 5_1:-66265133 | None:intergenic |
| AGCTCTGGAATTTCGCCTAC+CGG | 0.473451 | 5_1:-66266125 | None:intergenic |
| TTATCCATCGAAACTCCAAT+TGG | 0.473631 | 5_1:-66266682 | None:intergenic |
| TCTAGGCTTCTGCAATGGAT+CGG | 0.477349 | 5_1:-66266491 | None:intergenic |
| TTTCAACCAAATCGATTGAA+AGG | 0.483319 | 5_1:+66266578 | Msa0745160:CDS |
| AATGGCACAGCTGTTGGATC+TGG | 0.484897 | 5_1:+66266253 | Msa0745160:CDS |
| GCGGTAACTGTGCCGCGTAA+TGG | 0.485660 | 5_1:-66266058 | None:intergenic |
| TCAATGACTTGTATAACAAC+GGG | 0.486075 | 5_1:+66266764 | Msa0745160:CDS |
| GCAGCTGAATTCCAGTTCAA+AGG | 0.486076 | 5_1:-66265275 | None:intergenic |
| CAAACAGAATTAAGGAATGT+AGG | 0.494853 | 5_1:+66267418 | Msa0745160:CDS |
| TTCAACCAAATCGATTGAAA+GGG | 0.496434 | 5_1:+66266579 | Msa0745160:CDS |
| TAAGGCCTCTGAAGTTGCCA+TGG | 0.497043 | 5_1:+66266837 | Msa0745160:CDS |
| TATTGACTTGAGGCATTTGG+AGG | 0.499079 | 5_1:+66267038 | Msa0745160:CDS |
| ACAAGAGCAAGGCCTTCCTT+CGG | 0.501581 | 5_1:-66266229 | None:intergenic |
| ATTTGCAGATTATATTGGGA+TGG | 0.503269 | 5_1:-66267607 | None:intergenic |
| TGAAGTCATGCAAGGGAAGC+CGG | 0.504364 | 5_1:+66266348 | Msa0745160:CDS |
| AGGGTTGCTGACAGGAGAAA+AGG | 0.505444 | 5_1:+66267482 | Msa0745160:CDS |
| ACCCCAAAGAGTTCACATCT+TGG | 0.506444 | 5_1:-66266933 | None:intergenic |
| ACACAAGCTGAAGTTCCATC+CGG | 0.506990 | 5_1:+66266390 | Msa0745160:CDS |
| GTAGGTCATACCCACTATAC+AGG | 0.507329 | 5_1:+66267436 | Msa0745160:CDS |
| CAGCTGCAAATTCACTCAAA+GGG | 0.507593 | 5_1:+66265291 | Msa0745160:CDS |
| AGTGATATGTCTTGGTGGGG+TGG | 0.508840 | 5_1:+66265361 | Msa0745160:CDS |
| CAAAGGAAGTTGAAAGTGCA+AGG | 0.513174 | 5_1:+66267364 | Msa0745160:CDS |
| CTACCAGCAGAAAGATTTGA+GGG | 0.514551 | 5_1:-66266790 | None:intergenic |
| AAACTTGTTTATAATTCTGT+TGG | 0.514588 | 5_1:+66267705 | Msa0745160:three_prime_UTR |
| CTGCCCTCAAATCTTTCTGC+TGG | 0.518283 | 5_1:+66266787 | Msa0745160:CDS |
| TTTGCAGATTATATTGGGAT+GGG | 0.520814 | 5_1:-66267606 | None:intergenic |
| AGGAATTAGATCACCGGAAG+CGG | 0.521923 | 5_1:-66266077 | None:intergenic |
| AGGCGAAATTCCAGAGCTGT+TGG | 0.522740 | 5_1:+66266130 | Msa0745160:CDS |
| CACCCCAATTGGAGTTTCGA+TGG | 0.523805 | 5_1:+66266678 | Msa0745160:CDS |
| CTTTGCTCTTCAGAAGGAGA+TGG | 0.526889 | 5_1:+66265577 | Msa0745160:CDS |
| CTTTGCACATGACTTGTCAC+AGG | 0.528425 | 5_1:-66266895 | None:intergenic |
| CTCTTGTAACTTCTCCTCAA+TGG | 0.530704 | 5_1:+66266527 | Msa0745160:CDS |
| ATTAAAGGGATCATCTATGT+AGG | 0.532990 | 5_1:-66267202 | None:intergenic |
| TCTACCAGCAGAAAGATTTG+AGG | 0.533460 | 5_1:-66266791 | None:intergenic |
| TAAAACCATAATCCAGACTT+GGG | 0.534876 | 5_1:-66266816 | None:intergenic |
| TGCAAGGGTTGCATTTGAGA+AGG | 0.540341 | 5_1:+66267380 | Msa0745160:CDS |
| GGTTAGCAATGCAGCGATGT+AGG | 0.541189 | 5_1:-66266104 | None:intergenic |
| GTGATAAGGCTCTAAATGGT+GGG | 0.542827 | 5_1:+66266644 | Msa0745160:CDS |
| GTGCCGCGTAATGGCAAGAT+TGG | 0.543378 | 5_1:-66266049 | None:intergenic |
| AAGAAGCCAGTGATATGTCT+TGG | 0.546680 | 5_1:+66265353 | Msa0745160:CDS |
| TCAGCTGCAAATTCACTCAA+AGG | 0.547357 | 5_1:+66265290 | Msa0745160:CDS |
| GGGCACACTAACTATATCTC+AGG | 0.553366 | 5_1:+66265382 | Msa0745160:CDS |
| CCCTCACAAACCTGTATAGT+GGG | 0.553390 | 5_1:-66267446 | None:intergenic |
| ATCTGTGGACCGAGCCATTG+AGG | 0.553900 | 5_1:-66266541 | None:intergenic |
| CTGAAGATAGGGTTGCTGAC+AGG | 0.554777 | 5_1:+66267474 | Msa0745160:CDS |
| GTAACTTCTCCTCAATGGCT+CGG | 0.557606 | 5_1:+66266532 | Msa0745160:CDS |
| AGTGATAAGGCTCTAAATGG+TGG | 0.559859 | 5_1:+66266643 | Msa0745160:CDS |
| AAGATAAATATAATCATGTG+TGG | 0.565530 | 5_1:+66267766 | Msa0745160:three_prime_UTR |
| TTAAAACCATAATCCAGACT+TGG | 0.567038 | 5_1:-66266817 | None:intergenic |
| TTGTTCAGTTCTTCTATGTG+AGG | 0.570273 | 5_1:-66265552 | None:intergenic |
| AAAAGAGTCTCTTAATGCCA+AGG | 0.570402 | 5_1:+66266159 | Msa0745160:CDS |
| TTCGAGTTGAAGCCGAAGGA+AGG | 0.571632 | 5_1:+66266217 | Msa0745160:CDS |
| TTCAGAACAATATGCAGCCA+TGG | 0.573180 | 5_1:-66266854 | None:intergenic |
| TCGAGCTCTCAGAGTCTGCA+AGG | 0.573518 | 5_1:+66265441 | Msa0745160:CDS |
| CTAAATGGTGGGAATTTCCA+AGG | 0.574643 | 5_1:+66266655 | Msa0745160:CDS |
| ACAAGGCTTTGCTCTTCAGA+AGG | 0.576521 | 5_1:+66265571 | Msa0745160:CDS |
| GCAGAGTGCAACCAAATATG+TGG | 0.576865 | 5_1:-66267010 | None:intergenic |
| GTCAATGACTTGTATAACAA+CGG | 0.578417 | 5_1:+66266763 | Msa0745160:CDS |
| ATTCATATAAAAGCTAAACA+TGG | 0.579316 | 5_1:-66267669 | None:intergenic |
| GCCTGAATAGCCTTGTAGAA+GGG | 0.579660 | 5_1:-66265972 | None:intergenic |
| GCAAGGGTTGCATTTGAGAA+GGG | 0.582509 | 5_1:+66267381 | Msa0745160:CDS |
| GATCCAATTCTGGAATGCCT+TGG | 0.586654 | 5_1:+66267567 | Msa0745160:CDS |
| ACCAAGATGTGAACTCTTTG+GGG | 0.587468 | 5_1:+66266932 | Msa0745160:CDS |
| AAGCCAGTGATATGTCTTGG+TGG | 0.587874 | 5_1:+66265356 | Msa0745160:CDS |
| AATGCCTCAAGTCAATAGCT+TGG | 0.587899 | 5_1:-66267032 | None:intergenic |
| ACCCACTATACAGGTTTGTG+AGG | 0.588985 | 5_1:+66267445 | Msa0745160:CDS |
| AGTTCAAAGGGTCTGAGTCA+AGG | 0.595873 | 5_1:-66265262 | None:intergenic |
| CAGCCTCGATTTGACCCGGA+TGG | 0.598345 | 5_1:-66266405 | None:intergenic |
| ACCCCACCAAGACATATCAC+TGG | 0.599416 | 5_1:-66265359 | None:intergenic |
| TGCAGCCATGGCAACTTCAG+AGG | 0.600459 | 5_1:-66266842 | None:intergenic |
| TTCATATAAAAGCTAAACAT+GGG | 0.605505 | 5_1:-66267668 | None:intergenic |
| CACAAGCTGAAGTTCCATCC+GGG | 0.607305 | 5_1:+66266391 | Msa0745160:CDS |
| AGCCAGTGATATGTCTTGGT+GGG | 0.607306 | 5_1:+66265357 | Msa0745160:CDS |
| GTTCTTCGAGTTGAAGCCGA+AGG | 0.609153 | 5_1:+66266213 | Msa0745160:CDS |
| GTGTTGAAGCTAGCTGCGAG+TGG | 0.610983 | 5_1:+66265468 | Msa0745160:CDS |
| AGCTAGCTGCGAGTGGATCG+CGG | 0.615503 | 5_1:+66265475 | Msa0745160:CDS |
| ACTGAAGTCTCTATTGCCAA+AGG | 0.615652 | 5_1:+66267347 | Msa0745160:CDS |
| AGATAAATATAATCATGTGT+GGG | 0.616087 | 5_1:+66267767 | Msa0745160:three_prime_UTR |
| GTATGACTACGAGGAACAGA+AGG | 0.617578 | 5_1:-66265161 | None:intergenic |
| TTGGTGTGACATTATGGTTG+AGG | 0.620076 | 5_1:-66266030 | None:intergenic |
| AACCGGATAACTTCAATCTG+TGG | 0.620117 | 5_1:-66266556 | None:intergenic |
| ACACCAATCTTGCCATTACG+CGG | 0.623972 | 5_1:+66266046 | Msa0745160:CDS |
| AAAGGATGTTACACCAGATG+AGG | 0.624964 | 5_1:+66267500 | Msa0745160:CDS |
| AAGTACAAACTCTACAAACA+TGG | 0.626200 | 5_1:+66265190 | Msa0745160:exon |
| CGAGCTCTCAGAGTCTGCAA+GGG | 0.627497 | 5_1:+66265442 | Msa0745160:CDS |
| CTGTGCCATTTACAAGAGCA+AGG | 0.628462 | 5_1:-66266240 | None:intergenic |
| GCTGCTCTTGTTGCTGACGA+AGG | 0.628755 | 5_1:-66265929 | None:intergenic |
| GGACAGAGGAATTAGATCAC+CGG | 0.631506 | 5_1:-66266083 | None:intergenic |
| ATCCATCGAAACTCCAATTG+GGG | 0.640649 | 5_1:-66266680 | None:intergenic |
| AAGAGCAGCTATGCTTGTCA+GGG | 0.640694 | 5_1:+66265943 | Msa0745160:CDS |
| GCAGCAGCCTCGATTTGACC+CGG | 0.643264 | 5_1:-66266409 | None:intergenic |
| GCCAGTGATATGTCTTGGTG+GGG | 0.645581 | 5_1:+66265358 | Msa0745160:CDS |
| AGGGTTAATACCCTTCTACA+AGG | 0.647865 | 5_1:+66265962 | Msa0745160:CDS |
| GTTCCATCCGGGTCAAATCG+AGG | 0.649287 | 5_1:+66266402 | Msa0745160:CDS |
| TGAGGAAAATTTGCTCAAAG+TGG | 0.651056 | 5_1:+66267158 | Msa0745160:CDS |
| TCTGCCAAGCTATTGACTTG+AGG | 0.654017 | 5_1:+66267028 | Msa0745160:CDS |
| TCACATAGAAGAACTGAACA+AGG | 0.655320 | 5_1:+66265554 | Msa0745160:CDS |
| CCCACTATACAGGTTTGTGA+GGG | 0.659277 | 5_1:+66267446 | Msa0745160:CDS |
| AAAGGAAGTTGAAAGTGCAA+GGG | 0.662059 | 5_1:+66267365 | Msa0745160:CDS |
| GAATGCCTTGGTGATTGGAA+AGG | 0.664169 | 5_1:+66267579 | Msa0745160:CDS |
| TGAGGCAGCACCAAAGCCAG+TGG | 0.666779 | 5_1:-66265534 | None:intergenic |
| GATTTCTGCTTTGAAAACAG+TGG | 0.668764 | 5_1:+66266957 | Msa0745160:CDS |
| TCGCTGCATTGCTAACCGGT+AGG | 0.672083 | 5_1:+66266110 | Msa0745160:CDS |
| CTTTGAATTGTATGACTACG+AGG | 0.673856 | 5_1:-66265170 | None:intergenic |
| GAGAAGTTACAAGAGCGTAA+CGG | 0.674364 | 5_1:-66266519 | None:intergenic |
| TAATCCATTTAGATTCTGTG+AGG | 0.685362 | 5_1:+66267140 | Msa0745160:CDS |
| ATCGCGGAAAACATTGACAA+AGG | 0.691087 | 5_1:+66265491 | Msa0745160:CDS |
| GAACTCCTTTCCAATCACCA+AGG | 0.723073 | 5_1:-66267584 | None:intergenic |
| AATGCAGCGATGTAGGACAG+AGG | 0.731936 | 5_1:-66266097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAAAACTATTTCTAAAA+GGG | - | chr5_1:66265649-66265668 | None:intergenic | 15.0% |
| !!! | AATACTGATAATTATTCTTT+TGG | + | chr5_1:66265831-66265850 | Msa0745160:intron | 15.0% |
| !! | TTTCGTATTCTTATTATTTA+TGG | - | chr5_1:66267289-66267308 | None:intergenic | 15.0% |
| !!! | GCTAAAAAACTATTTCTAAA+AGG | - | chr5_1:66265650-66265669 | None:intergenic | 20.0% |
| !!! | TAAATCATTTTTCTTTCACA+AGG | + | chr5_1:66265855-66265874 | Msa0745160:intron | 20.0% |
| !!! | TTTTTAAACTGTGCAATATT+TGG | + | chr5_1:66265878-66265897 | Msa0745160:CDS | 20.0% |
| !!! | TTTTAAACTGTGCAATATTT+GGG | + | chr5_1:66265879-66265898 | Msa0745160:CDS | 20.0% |
| !! | AAACATTTGCAGATTATATT+GGG | - | chr5_1:66267614-66267633 | None:intergenic | 20.0% |
| !! | TAAACATTTGCAGATTATAT+TGG | - | chr5_1:66267615-66267634 | None:intergenic | 20.0% |
| !! | AATGTTTAACAATAATTAGC+AGG | + | chr5_1:66267627-66267646 | Msa0745160:three_prime_UTR | 20.0% |
| !! | TTCATATAAAAGCTAAACAT+GGG | - | chr5_1:66267671-66267690 | None:intergenic | 20.0% |
| !! | ATTCATATAAAAGCTAAACA+TGG | - | chr5_1:66267672-66267691 | None:intergenic | 20.0% |
| !!! | AAACTTGTTTATAATTCTGT+TGG | + | chr5_1:66267705-66267724 | Msa0745160:three_prime_UTR | 20.0% |
| !! | AAGATAAATATAATCATGTG+TGG | + | chr5_1:66267766-66267785 | Msa0745160:three_prime_UTR | 20.0% |
| !! | AGATAAATATAATCATGTGT+GGG | + | chr5_1:66267767-66267786 | Msa0745160:three_prime_UTR | 20.0% |
| !! | TACGTTTTACTTCATCAAAA+TGG | - | chr5_1:66265319-66265338 | None:intergenic | 25.0% |
| !! | TTTTGATGAAGTAAAACGTA+TGG | + | chr5_1:66265319-66265338 | Msa0745160:CDS | 25.0% |
| ! | AAATGAGATTGTTAGAGTTT+AGG | + | chr5_1:66265678-66265697 | Msa0745160:intron | 25.0% |
| ! | ATAAGATGATGTGTAAATTC+CGG | - | chr5_1:66266370-66266389 | None:intergenic | 25.0% |
| !! | ATTATGGAACACATTTTAGA+TGG | + | chr5_1:66266433-66266452 | Msa0745160:CDS | 25.0% |
| !! | AATTGATGTTTCAAGTGATA+AGG | + | chr5_1:66266630-66266649 | Msa0745160:CDS | 25.0% |
| !! | TAAAGTACTTGCTTTAGTTT+CGG | - | chr5_1:66267246-66267265 | None:intergenic | 25.0% |
| ! | TCTTCAACATTTGAGAAAAT+TGG | + | chr5_1:66267309-66267328 | Msa0745160:CDS | 25.0% |
| ! | TGAAATTCCAAACAGAATTA+AGG | + | chr5_1:66267410-66267429 | Msa0745160:CDS | 25.0% |
| !!! | GCTTTTAAGGTTTAAGTAGA+GGG | - | chr5_1:66265142-66265161 | None:intergenic | 30.0% |
| AAGTACAAACTCTACAAACA+TGG | + | chr5_1:66265190-66265209 | Msa0745160:exon | 30.0% | |
| !!! | ACATTTTTGGTGTCATTTTG+TGG | - | chr5_1:66265227-66265246 | None:intergenic | 30.0% |
| ! | CAAGTTTGAGCTAACATTTT+TGG | - | chr5_1:66265240-66265259 | None:intergenic | 30.0% |
| GCTTCAATTGCATAACAAAT+AGG | - | chr5_1:66265783-66265802 | None:intergenic | 30.0% | |
| TTTCAACCAAATCGATTGAA+AGG | + | chr5_1:66266578-66266597 | Msa0745160:CDS | 30.0% | |
| TTCAACCAAATCGATTGAAA+GGG | + | chr5_1:66266579-66266598 | Msa0745160:CDS | 30.0% | |
| TCACTTGAAACATCAATTAG+AGG | - | chr5_1:66266628-66266647 | None:intergenic | 30.0% | |
| ! | GTCAATGACTTGTATAACAA+CGG | + | chr5_1:66266763-66266782 | Msa0745160:CDS | 30.0% |
| ! | TCAATGACTTGTATAACAAC+GGG | + | chr5_1:66266764-66266783 | Msa0745160:CDS | 30.0% |
| TAAAACCATAATCCAGACTT+GGG | - | chr5_1:66266819-66266838 | None:intergenic | 30.0% | |
| TTAAAACCATAATCCAGACT+TGG | - | chr5_1:66266820-66266839 | None:intergenic | 30.0% | |
| !! | AAGTCTGGATTATGGTTTTA+AGG | + | chr5_1:66266819-66266838 | Msa0745160:CDS | 30.0% |
| ! | TACTGTAAGCAGAGTTTTTA+AGG | + | chr5_1:66267086-66267105 | Msa0745160:CDS | 30.0% |
| TAATCCATTTAGATTCTGTG+AGG | + | chr5_1:66267140-66267159 | Msa0745160:CDS | 30.0% | |
| ! | TTTTCCTCACAGAATCTAAA+TGG | - | chr5_1:66267147-66267166 | None:intergenic | 30.0% |
| ATTAAAGGGATCATCTATGT+AGG | - | chr5_1:66267205-66267224 | None:intergenic | 30.0% | |
| AACGGGTATGTAACATTAAA+GGG | - | chr5_1:66267219-66267238 | None:intergenic | 30.0% | |
| CTACATTCCTTAATTCTGTT+TGG | - | chr5_1:66267420-66267439 | None:intergenic | 30.0% | |
| CAAACAGAATTAAGGAATGT+AGG | + | chr5_1:66267418-66267437 | Msa0745160:CDS | 30.0% | |
| !!! | ACTTTTTCAAATTCCTCATC+TGG | - | chr5_1:66267516-66267535 | None:intergenic | 30.0% |
| AAAGATTGTTGATCCAATTC+TGG | + | chr5_1:66267557-66267576 | Msa0745160:CDS | 30.0% | |
| TTTGCAGATTATATTGGGAT+GGG | - | chr5_1:66267609-66267628 | None:intergenic | 30.0% | |
| ATTTGCAGATTATATTGGGA+TGG | - | chr5_1:66267610-66267629 | None:intergenic | 30.0% | |
| !!! | GGCTTTTAAGGTTTAAGTAG+AGG | - | chr5_1:66265143-66265162 | None:intergenic | 35.0% |
| CTTTGAATTGTATGACTACG+AGG | - | chr5_1:66265173-66265192 | None:intergenic | 35.0% | |
| !!! | GGTGTCATTTTGTGGATTAA+TGG | - | chr5_1:66265219-66265238 | None:intergenic | 35.0% |
| TAACAGTAGCTCACATGTTA+AGG | + | chr5_1:66265418-66265437 | Msa0745160:CDS | 35.0% | |
| !! | GACAAAGGTACTCCAATTTA+TGG | + | chr5_1:66265506-66265525 | Msa0745160:CDS | 35.0% |
| TTGTTCAGTTCTTCTATGTG+AGG | - | chr5_1:66265555-66265574 | None:intergenic | 35.0% | |
| TCACATAGAAGAACTGAACA+AGG | + | chr5_1:66265554-66265573 | Msa0745160:CDS | 35.0% | |
| ! | GCATTAAGAGACTCTTTTGA+GGG | - | chr5_1:66266157-66266176 | None:intergenic | 35.0% |
| AAAAGAGTCTCTTAATGCCA+AGG | + | chr5_1:66266159-66266178 | Msa0745160:CDS | 35.0% | |
| ATTTAGCAGGACTGAATTCT+GGG | + | chr5_1:66266191-66266210 | Msa0745160:CDS | 35.0% | |
| ! | TTTTCACTGAAGTCATGCAA+GGG | + | chr5_1:66266341-66266360 | Msa0745160:CDS | 35.0% |
| !! | CAATCGATTTGGTTGAAAAC+CGG | - | chr5_1:66266576-66266595 | None:intergenic | 35.0% |
| TATCTCCCTTTCAATCGATT+TGG | - | chr5_1:66266587-66266606 | None:intergenic | 35.0% | |
| !! | TCAAGTGATAAGGCTCTAAA+TGG | + | chr5_1:66266640-66266659 | Msa0745160:CDS | 35.0% |
| TATCCATCGAAACTCCAATT+GGG | - | chr5_1:66266684-66266703 | None:intergenic | 35.0% | |
| TTATCCATCGAAACTCCAAT+TGG | - | chr5_1:66266685-66266704 | None:intergenic | 35.0% | |
| CGTTTAGCTATTGCTTCAAT+TGG | + | chr5_1:66266709-66266728 | Msa0745160:CDS | 35.0% | |
| AACCAAGATGTGAACTCTTT+GGG | + | chr5_1:66266931-66266950 | Msa0745160:CDS | 35.0% | |
| !! | GATTTCTGCTTTGAAAACAG+TGG | + | chr5_1:66266957-66266976 | Msa0745160:CDS | 35.0% |
| ! | TGAGGAAAATTTGCTCAAAG+TGG | + | chr5_1:66267158-66267177 | Msa0745160:CDS | 35.0% |
| CAACGGGTATGTAACATTAA+AGG | - | chr5_1:66267220-66267239 | None:intergenic | 35.0% | |
| ! | TGAGAAAATTGGAGCTTTTG+AGG | + | chr5_1:66267320-66267339 | Msa0745160:CDS | 35.0% |
| ! | AAAGGAAGTTGAAAGTGCAA+GGG | + | chr5_1:66267365-66267384 | Msa0745160:CDS | 35.0% |
| CAGCTGAATTCCAGTTCAAA+GGG | - | chr5_1:66265277-66265296 | None:intergenic | 40.0% | |
| TCAGCTGCAAATTCACTCAA+AGG | + | chr5_1:66265290-66265309 | Msa0745160:CDS | 40.0% | |
| CAGCTGCAAATTCACTCAAA+GGG | + | chr5_1:66265291-66265310 | Msa0745160:CDS | 40.0% | |
| AAGAAGCCAGTGATATGTCT+TGG | + | chr5_1:66265353-66265372 | Msa0745160:CDS | 40.0% | |
| ATCGCGGAAAACATTGACAA+AGG | + | chr5_1:66265491-66265510 | Msa0745160:CDS | 40.0% | |
| CCAGTGGTAACACCATAAAT+TGG | - | chr5_1:66265521-66265540 | None:intergenic | 40.0% | |
| !! | CCAATTTATGGTGTTACCAC+TGG | + | chr5_1:66265518-66265537 | Msa0745160:CDS | 40.0% |
| AGGGTTAATACCCTTCTACA+AGG | + | chr5_1:66265962-66265981 | Msa0745160:CDS | 40.0% | |
| GACATTATGGTTGAGGAGTT+TGG | - | chr5_1:66266026-66266045 | None:intergenic | 40.0% | |
| TTGGTGTGACATTATGGTTG+AGG | - | chr5_1:66266033-66266052 | None:intergenic | 40.0% | |
| GCAAGATTGGTGTGACATTA+TGG | - | chr5_1:66266039-66266058 | None:intergenic | 40.0% | |
| ! | GGCATTAAGAGACTCTTTTG+AGG | - | chr5_1:66266158-66266177 | None:intergenic | 40.0% |
| TGCTAAATGGAAAGCTTCCT+TGG | - | chr5_1:66266179-66266198 | None:intergenic | 40.0% | |
| AAGGAAGCTTTCCATTTAGC+AGG | + | chr5_1:66266178-66266197 | Msa0745160:CDS | 40.0% | |
| CAGAATTCAGTCCTGCTAAA+TGG | - | chr5_1:66266192-66266211 | None:intergenic | 40.0% | |
| CATTTAGCAGGACTGAATTC+TGG | + | chr5_1:66266190-66266209 | Msa0745160:CDS | 40.0% | |
| ! | GTTTTCACTGAAGTCATGCA+AGG | + | chr5_1:66266340-66266359 | Msa0745160:CDS | 40.0% |
| ! | TCTTTTCTAGGCTTCTGCAA+TGG | - | chr5_1:66266499-66266518 | None:intergenic | 40.0% |
| ! | GAGAAGTTACAAGAGCGTAA+CGG | - | chr5_1:66266522-66266541 | None:intergenic | 40.0% |
| CTCTTGTAACTTCTCCTCAA+TGG | + | chr5_1:66266527-66266546 | Msa0745160:CDS | 40.0% | |
| GTCCACAGATTGAAGTTATC+CGG | + | chr5_1:66266554-66266573 | Msa0745160:CDS | 40.0% | |
| AACCGGATAACTTCAATCTG+TGG | - | chr5_1:66266559-66266578 | None:intergenic | 40.0% | |
| !! | AGTGATAAGGCTCTAAATGG+TGG | + | chr5_1:66266643-66266662 | Msa0745160:CDS | 40.0% |
| !! | GTGATAAGGCTCTAAATGGT+GGG | + | chr5_1:66266644-66266663 | Msa0745160:CDS | 40.0% |
| ! | CTAAATGGTGGGAATTTCCA+AGG | + | chr5_1:66266655-66266674 | Msa0745160:CDS | 40.0% |
| ATCCATCGAAACTCCAATTG+GGG | - | chr5_1:66266683-66266702 | None:intergenic | 40.0% | |
| CTACCAGCAGAAAGATTTGA+GGG | - | chr5_1:66266793-66266812 | None:intergenic | 40.0% | |
| TCTACCAGCAGAAAGATTTG+AGG | - | chr5_1:66266794-66266813 | None:intergenic | 40.0% | |
| AGAAACCCAAGTCTGGATTA+TGG | + | chr5_1:66266811-66266830 | Msa0745160:CDS | 40.0% | |
| TTCAGAACAATATGCAGCCA+TGG | - | chr5_1:66266857-66266876 | None:intergenic | 40.0% | |
| CAACCAAGATGTGAACTCTT+TGG | + | chr5_1:66266930-66266949 | Msa0745160:CDS | 40.0% | |
| ACCAAGATGTGAACTCTTTG+GGG | + | chr5_1:66266932-66266951 | Msa0745160:CDS | 40.0% | |
| AATGCCTCAAGTCAATAGCT+TGG | - | chr5_1:66267035-66267054 | None:intergenic | 40.0% | |
| !! | AGCTATTGACTTGAGGCATT+TGG | + | chr5_1:66267035-66267054 | Msa0745160:CDS | 40.0% |
| !! | TATTGACTTGAGGCATTTGG+AGG | + | chr5_1:66267038-66267057 | Msa0745160:CDS | 40.0% |
| ! | TGCTTTAGTTTCGGCATCAA+CGG | - | chr5_1:66267237-66267256 | None:intergenic | 40.0% |
| ACTGAAGTCTCTATTGCCAA+AGG | + | chr5_1:66267347-66267366 | Msa0745160:CDS | 40.0% | |
| CTTGCACTTTCAACTTCCTT+TGG | - | chr5_1:66267366-66267385 | None:intergenic | 40.0% | |
| ! | CAAAGGAAGTTGAAAGTGCA+AGG | + | chr5_1:66267364-66267383 | Msa0745160:CDS | 40.0% |
| TGAGGGAAGAACTGAAGATA+GGG | + | chr5_1:66267463-66267482 | Msa0745160:CDS | 40.0% | |
| AAAGGATGTTACACCAGATG+AGG | + | chr5_1:66267500-66267519 | Msa0745160:CDS | 40.0% | |
| ! | CGAGGAACAGAAGGCTTTTA+AGG | - | chr5_1:66265155-66265174 | None:intergenic | 45.0% |
| GTATGACTACGAGGAACAGA+AGG | - | chr5_1:66265164-66265183 | None:intergenic | 45.0% | |
| AGTTCAAAGGGTCTGAGTCA+AGG | - | chr5_1:66265265-66265284 | None:intergenic | 45.0% | |
| TTGACTCAGACCCTTTGAAC+TGG | + | chr5_1:66265264-66265283 | Msa0745160:CDS | 45.0% | |
| GCAGCTGAATTCCAGTTCAA+AGG | - | chr5_1:66265278-66265297 | None:intergenic | 45.0% | |
| AAGCCAGTGATATGTCTTGG+TGG | + | chr5_1:66265356-66265375 | Msa0745160:CDS | 45.0% | |
| AGCCAGTGATATGTCTTGGT+GGG | + | chr5_1:66265357-66265376 | Msa0745160:CDS | 45.0% | |
| GGGCACACTAACTATATCTC+AGG | + | chr5_1:66265382-66265401 | Msa0745160:CDS | 45.0% | |
| !! | TATGGTGTTACCACTGGCTT+TGG | + | chr5_1:66265524-66265543 | Msa0745160:CDS | 45.0% |
| ACAAGGCTTTGCTCTTCAGA+AGG | + | chr5_1:66265571-66265590 | Msa0745160:CDS | 45.0% | |
| CTTTGCTCTTCAGAAGGAGA+TGG | + | chr5_1:66265577-66265596 | Msa0745160:CDS | 45.0% | |
| CTCTTCAGAAGGAGATGGTT+AGG | + | chr5_1:66265582-66265601 | Msa0745160:CDS | 45.0% | |
| CAGAAGGAGATGGTTAGGTA+AGG | + | chr5_1:66265587-66265606 | Msa0745160:intron | 45.0% | |
| AAGAGCAGCTATGCTTGTCA+GGG | + | chr5_1:66265943-66265962 | Msa0745160:CDS | 45.0% | |
| ACCCTTCTACAAGGCTATTC+AGG | + | chr5_1:66265971-66265990 | Msa0745160:CDS | 45.0% | |
| !! | GCCTGAATAGCCTTGTAGAA+GGG | - | chr5_1:66265975-66265994 | None:intergenic | 45.0% |
| !! | TGCCTGAATAGCCTTGTAGA+AGG | - | chr5_1:66265976-66265995 | None:intergenic | 45.0% |
| ACACCAATCTTGCCATTACG+CGG | + | chr5_1:66266046-66266065 | Msa0745160:CDS | 45.0% | |
| AGGAATTAGATCACCGGAAG+CGG | - | chr5_1:66266080-66266099 | None:intergenic | 45.0% | |
| GGACAGAGGAATTAGATCAC+CGG | - | chr5_1:66266086-66266105 | None:intergenic | 45.0% | |
| TACATCGCTGCATTGCTAAC+CGG | + | chr5_1:66266106-66266125 | Msa0745160:CDS | 45.0% | |
| GAAGGCCTTGCTCTTGTAAA+TGG | + | chr5_1:66266235-66266254 | Msa0745160:CDS | 45.0% | |
| !! | CTGTGCCATTTACAAGAGCA+AGG | - | chr5_1:66266243-66266262 | None:intergenic | 45.0% |
| CTTGTAAATGGCACAGCTGT+TGG | + | chr5_1:66266247-66266266 | Msa0745160:CDS | 45.0% | |
| ! | TGCTTCTACGGTTCTTTTCG+AGG | + | chr5_1:66266279-66266298 | Msa0745160:CDS | 45.0% |
| ACACAAGCTGAAGTTCCATC+CGG | + | chr5_1:66266390-66266409 | Msa0745160:CDS | 45.0% | |
| AATCGAGGCTGCTGCTATTA+TGG | + | chr5_1:66266417-66266436 | Msa0745160:CDS | 45.0% | |
| TCTAGGCTTCTGCAATGGAT+CGG | - | chr5_1:66266494-66266513 | None:intergenic | 45.0% | |
| ! | AGAGCGTAACGGTCTTTTCT+AGG | - | chr5_1:66266511-66266530 | None:intergenic | 45.0% |
| GTAACTTCTCCTCAATGGCT+CGG | + | chr5_1:66266532-66266551 | Msa0745160:CDS | 45.0% | |
| ! | AATTTCCAAGGCACCCCAAT+TGG | + | chr5_1:66266667-66266686 | Msa0745160:CDS | 45.0% |
| ! | CTTTGCACATGACTTGTCAC+AGG | - | chr5_1:66266898-66266917 | None:intergenic | 45.0% |
| ACCCCAAAGAGTTCACATCT+TGG | - | chr5_1:66266936-66266955 | None:intergenic | 45.0% | |
| GCTCATGTCGTCCACATATT+TGG | + | chr5_1:66266999-66267018 | Msa0745160:CDS | 45.0% | |
| GCAGAGTGCAACCAAATATG+TGG | - | chr5_1:66267013-66267032 | None:intergenic | 45.0% | |
| !! | TCTGCCAAGCTATTGACTTG+AGG | + | chr5_1:66267028-66267047 | Msa0745160:CDS | 45.0% |
| ! | GCTTTAGTTTCGGCATCAAC+GGG | - | chr5_1:66267236-66267255 | None:intergenic | 45.0% |
| TGCAAGGGTTGCATTTGAGA+AGG | + | chr5_1:66267380-66267399 | Msa0745160:CDS | 45.0% | |
| GCAAGGGTTGCATTTGAGAA+GGG | + | chr5_1:66267381-66267400 | Msa0745160:CDS | 45.0% | |
| GTAGGTCATACCCACTATAC+AGG | + | chr5_1:66267436-66267455 | Msa0745160:CDS | 45.0% | |
| ACCCACTATACAGGTTTGTG+AGG | + | chr5_1:66267445-66267464 | Msa0745160:CDS | 45.0% | |
| CCCTCACAAACCTGTATAGT+GGG | - | chr5_1:66267449-66267468 | None:intergenic | 45.0% | |
| CCCACTATACAGGTTTGTGA+GGG | + | chr5_1:66267446-66267465 | Msa0745160:CDS | 45.0% | |
| TCCCTCACAAACCTGTATAG+TGG | - | chr5_1:66267450-66267469 | None:intergenic | 45.0% | |
| GTGAGGGAAGAACTGAAGAT+AGG | + | chr5_1:66267462-66267481 | Msa0745160:CDS | 45.0% | |
| !! | GATCCAATTCTGGAATGCCT+TGG | + | chr5_1:66267567-66267586 | Msa0745160:CDS | 45.0% |
| ! | TCACCAAGGCATTCCAGAAT+TGG | - | chr5_1:66267573-66267592 | None:intergenic | 45.0% |
| !! | TTCTGGAATGCCTTGGTGAT+TGG | + | chr5_1:66267574-66267593 | Msa0745160:CDS | 45.0% |
| ! | GAATGCCTTGGTGATTGGAA+AGG | + | chr5_1:66267579-66267598 | Msa0745160:CDS | 45.0% |
| GAACTCCTTTCCAATCACCA+AGG | - | chr5_1:66267587-66267606 | None:intergenic | 45.0% | |
| GCCAGTGATATGTCTTGGTG+GGG | + | chr5_1:66265358-66265377 | Msa0745160:CDS | 50.0% | |
| ACCCCACCAAGACATATCAC+TGG | - | chr5_1:66265362-66265381 | None:intergenic | 50.0% | |
| AGTGATATGTCTTGGTGGGG+TGG | + | chr5_1:66265361-66265380 | Msa0745160:CDS | 50.0% | |
| GTGATATGTCTTGGTGGGGT+GGG | + | chr5_1:66265362-66265381 | Msa0745160:CDS | 50.0% | |
| CAAGAGCAGCTATGCTTGTC+AGG | + | chr5_1:66265942-66265961 | Msa0745160:CDS | 50.0% | |
| AATGCAGCGATGTAGGACAG+AGG | - | chr5_1:66266100-66266119 | None:intergenic | 50.0% | |
| GGTTAGCAATGCAGCGATGT+AGG | - | chr5_1:66266107-66266126 | None:intergenic | 50.0% | |
| !! | AGCTCTGGAATTTCGCCTAC+CGG | - | chr5_1:66266128-66266147 | None:intergenic | 50.0% |
| AGGCGAAATTCCAGAGCTGT+TGG | + | chr5_1:66266130-66266149 | Msa0745160:CDS | 50.0% | |
| !! | TTTTGAGGGTCCAACAGCTC+TGG | - | chr5_1:66266143-66266162 | None:intergenic | 50.0% |
| !! | GTTCTTCGAGTTGAAGCCGA+AGG | + | chr5_1:66266213-66266232 | Msa0745160:CDS | 50.0% |
| !! | TTCGAGTTGAAGCCGAAGGA+AGG | + | chr5_1:66266217-66266236 | Msa0745160:CDS | 50.0% |
| ACAAGAGCAAGGCCTTCCTT+CGG | - | chr5_1:66266232-66266251 | None:intergenic | 50.0% | |
| AATGGCACAGCTGTTGGATC+TGG | + | chr5_1:66266253-66266272 | Msa0745160:CDS | 50.0% | |
| TGGATCTGGCGTTGCTTCTA+CGG | + | chr5_1:66266267-66266286 | Msa0745160:CDS | 50.0% | |
| TGAAGTCATGCAAGGGAAGC+CGG | + | chr5_1:66266348-66266367 | Msa0745160:CDS | 50.0% | |
| CACAAGCTGAAGTTCCATCC+GGG | + | chr5_1:66266391-66266410 | Msa0745160:CDS | 50.0% | |
| CTAGGCTTCTGCAATGGATC+GGG | - | chr5_1:66266493-66266512 | None:intergenic | 50.0% | |
| ! | AAACTCCAATTGGGGTGCCT+TGG | - | chr5_1:66266675-66266694 | None:intergenic | 50.0% |
| CACCCCAATTGGAGTTTCGA+TGG | + | chr5_1:66266678-66266697 | Msa0745160:CDS | 50.0% | |
| CTGCCCTCAAATCTTTCTGC+TGG | + | chr5_1:66266787-66266806 | Msa0745160:CDS | 50.0% | |
| TGCTGGTAGAAACCCAAGTC+TGG | + | chr5_1:66266804-66266823 | Msa0745160:CDS | 50.0% | |
| !! | TAAGGCCTCTGAAGTTGCCA+TGG | + | chr5_1:66266837-66266856 | Msa0745160:CDS | 50.0% |
| CTGAAGATAGGGTTGCTGAC+AGG | + | chr5_1:66267474-66267493 | Msa0745160:CDS | 50.0% | |
| AGGGTTGCTGACAGGAGAAA+AGG | + | chr5_1:66267482-66267501 | Msa0745160:CDS | 50.0% | |
| TCGAGCTCTCAGAGTCTGCA+AGG | + | chr5_1:66265441-66265460 | Msa0745160:CDS | 55.0% | |
| CGAGCTCTCAGAGTCTGCAA+GGG | + | chr5_1:66265442-66265461 | Msa0745160:CDS | 55.0% | |
| GTGTTGAAGCTAGCTGCGAG+TGG | + | chr5_1:66265468-66265487 | Msa0745160:CDS | 55.0% | |
| GCTGCTCTTGTTGCTGACGA+AGG | - | chr5_1:66265932-66265951 | None:intergenic | 55.0% | |
| GTGCCGCGTAATGGCAAGAT+TGG | - | chr5_1:66266052-66266071 | None:intergenic | 55.0% | |
| TCGCTGCATTGCTAACCGGT+AGG | + | chr5_1:66266110-66266129 | Msa0745160:CDS | 55.0% | |
| GTTCCATCCGGGTCAAATCG+AGG | + | chr5_1:66266402-66266421 | Msa0745160:CDS | 55.0% | |
| ATCTGTGGACCGAGCCATTG+AGG | - | chr5_1:66266544-66266563 | None:intergenic | 55.0% | |
| TGCAGCCATGGCAACTTCAG+AGG | - | chr5_1:66266845-66266864 | None:intergenic | 55.0% | |
| CTCTCAGAGTCTGCAAGGGC+TGG | + | chr5_1:66265446-66265465 | Msa0745160:CDS | 60.0% | |
| AGCTAGCTGCGAGTGGATCG+CGG | + | chr5_1:66265475-66265494 | Msa0745160:CDS | 60.0% | |
| TGAGGCAGCACCAAAGCCAG+TGG | - | chr5_1:66265537-66265556 | None:intergenic | 60.0% | |
| GCGGTAACTGTGCCGCGTAA+TGG | - | chr5_1:66266061-66266080 | None:intergenic | 60.0% | |
| ! | CAGCCTCGATTTGACCCGGA+TGG | - | chr5_1:66266408-66266427 | None:intergenic | 60.0% |
| ! | GCAGCAGCCTCGATTTGACC+CGG | - | chr5_1:66266412-66266431 | None:intergenic | 60.0% |
| CGCGGCACAGTTACCGCTTC+CGG | + | chr5_1:66266064-66266083 | Msa0745160:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 66265134 | 66267795 | 66265134 | ID=Msa0745160;Name=Msa0745160 |
| chr5_1 | mRNA | 66265134 | 66267795 | 66265134 | ID=Msa0745160-mRNA-1;Parent=Msa0745160;Name=Msa0745160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75|1|1|1|1|1|2|175|712 |
| chr5_1 | exon | 66265134 | 66265603 | 66265134 | ID=Msa0745160-mRNA-1:exon:19691;Parent=Msa0745160-mRNA-1 |
| chr5_1 | exon | 66265877 | 66267795 | 66265877 | ID=Msa0745160-mRNA-1:exon:19692;Parent=Msa0745160-mRNA-1 |
| chr5_1 | five_prime_UTR | 66265134 | 66265208 | 66265134 | ID=Msa0745160-mRNA-1:five_prime_utr;Parent=Msa0745160-mRNA-1 |
| chr5_1 | CDS | 66265209 | 66265603 | 66265209 | ID=Msa0745160-mRNA-1:cds;Parent=Msa0745160-mRNA-1 |
| chr5_1 | CDS | 66265877 | 66267620 | 66265877 | ID=Msa0745160-mRNA-1:cds;Parent=Msa0745160-mRNA-1 |
| chr5_1 | three_prime_UTR | 66267621 | 66267795 | 66267621 | ID=Msa0745160-mRNA-1:three_prime_utr;Parent=Msa0745160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
