Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776660 | sp|P19143|PAL3_PHAVU | 83.731 | 713 | 112 | 2 | 1 | 712 | 1 | 710 | 0.0 | 1230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776660 | G7K0Q0 | 95.225 | 712 | 30 | 1 | 1 | 712 | 1 | 708 | 0.0 | 1401 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0776660 | 0.801131 | 1.040500e-48 | -8.615850e-47 |
| Msa0031410 | Msa0776660 | 0.810494 | 1.120781e-50 | -8.615850e-47 |
| Msa0107830 | Msa0776660 | 0.814851 | 1.248083e-51 | -8.615850e-47 |
| Msa0614960 | Msa0776660 | 0.853438 | 2.390100e-61 | -8.615850e-47 |
| Msa0622800 | Msa0776660 | -0.813935 | 1.989936e-51 | -8.615850e-47 |
| Msa0629140 | Msa0776660 | 0.816294 | 5.955202e-52 | -8.615850e-47 |
| Msa0652590 | Msa0776660 | 0.863186 | 2.980075e-64 | -8.615850e-47 |
| Msa0652600 | Msa0776660 | 0.827198 | 1.785719e-54 | -8.615850e-47 |
| Msa0655370 | Msa0776660 | 0.824065 | 9.876422e-54 | -8.615850e-47 |
| Msa0698280 | Msa0776660 | 0.800055 | 1.724522e-48 | -8.615850e-47 |
| Msa0699170 | Msa0776660 | 0.868743 | 5.203271e-66 | -8.615850e-47 |
| Msa0704560 | Msa0776660 | 0.827750 | 1.316269e-54 | -8.615850e-47 |
| Msa0707330 | Msa0776660 | 0.809474 | 1.858950e-50 | -8.615850e-47 |
| Msa0715040 | Msa0776660 | 0.809608 | 1.739952e-50 | -8.615850e-47 |
| Msa0716620 | Msa0776660 | 0.836121 | 1.126453e-56 | -8.615850e-47 |
| Msa0731580 | Msa0776660 | 0.835395 | 1.720034e-56 | -8.615850e-47 |
| Msa0738680 | Msa0776660 | 0.806857 | 6.710131e-50 | -8.615850e-47 |
| Msa0744550 | Msa0776660 | 0.801221 | 9.975428e-49 | -8.615850e-47 |
| Msa0745160 | Msa0776660 | 0.923588 | 2.178969e-89 | -8.615850e-47 |
| Msa0750790 | Msa0776660 | 0.813996 | 1.929242e-51 | -8.615850e-47 |
| Msa0750830 | Msa0776660 | 0.812653 | 3.804747e-51 | -8.615850e-47 |
| Msa0771810 | Msa0776660 | 0.820373 | 7.097684e-53 | -8.615850e-47 |
| Msa0772350 | Msa0776660 | 0.832974 | 6.959046e-56 | -8.615850e-47 |
| Msa0776660 | Msa0795320 | 0.800155 | 1.645973e-48 | -8.615850e-47 |
| Msa0776660 | Msa0799120 | 0.819046 | 1.426737e-52 | -8.615850e-47 |
| Msa0776660 | Msa0809920 | 0.841721 | 4.000754e-58 | -8.615850e-47 |
| Msa0776660 | Msa0817190 | 0.914080 | 2.916273e-84 | -8.615850e-47 |
| Msa0776660 | Msa0819150 | 0.811189 | 7.930373e-51 | -8.615850e-47 |
| Msa0776660 | Msa0826240 | 0.800570 | 1.354445e-48 | -8.615850e-47 |
| Msa0776660 | Msa0826360 | 0.804029 | 2.628224e-49 | -8.615850e-47 |
| Msa0776660 | Msa0829990 | 0.800745 | 1.247520e-48 | -8.615850e-47 |
| Msa0776660 | Msa0830930 | 0.807671 | 4.510268e-50 | -8.615850e-47 |
| Msa0776660 | Msa0850480 | 0.822905 | 1.844078e-53 | -8.615850e-47 |
| Msa0776660 | Msa0865430 | 0.906718 | 1.099344e-80 | -8.615850e-47 |
| Msa0776660 | Msa0865830 | 0.800275 | 1.555323e-48 | -8.615850e-47 |
| Msa0776660 | Msa0874750 | 0.830469 | 2.886503e-55 | -8.615850e-47 |
| Msa0776660 | Msa0945330 | 0.814570 | 1.440142e-51 | -8.615850e-47 |
| Msa0776660 | Msa0968990 | 0.805455 | 1.323858e-49 | -8.615850e-47 |
| Msa0776660 | Msa0976400 | 0.806355 | 8.562048e-50 | -8.615850e-47 |
| Msa0776660 | Msa0985380 | 0.806696 | 7.256718e-50 | -8.615850e-47 |
| Msa0776660 | Msa1001120 | 0.814872 | 1.234636e-51 | -8.615850e-47 |
| Msa0776660 | Msa1027340 | 0.810956 | 8.906566e-51 | -8.615850e-47 |
| Msa0776660 | Msa1027400 | 0.803908 | 2.784359e-49 | -8.615850e-47 |
| Msa0776660 | Msa1027910 | 0.806504 | 7.966744e-50 | -8.615850e-47 |
| Msa0776660 | Msa1030210 | 0.819655 | 1.036183e-52 | -8.615850e-47 |
| Msa0776660 | Msa1035050 | 0.835311 | 1.806183e-56 | -8.615850e-47 |
| Msa0776660 | Msa1040330 | 0.803639 | 3.166339e-49 | -8.615850e-47 |
| Msa0776660 | Msa1056890 | 0.824203 | 9.164294e-54 | -8.615850e-47 |
| Msa0776660 | Msa1069250 | 0.811051 | 8.493875e-51 | -8.615850e-47 |
| Msa0776660 | Msa1071350 | 0.839722 | 1.336576e-57 | -8.615850e-47 |
| Msa0776660 | Msa1075090 | 0.835591 | 1.535122e-56 | -8.615850e-47 |
| Msa0776660 | Msa1077970 | 0.846085 | 2.711022e-59 | -8.615850e-47 |
| Msa0776660 | Msa1082090 | 0.806414 | 8.323890e-50 | -8.615850e-47 |
| Msa0776660 | Msa1085820 | 0.801107 | 1.052526e-48 | -8.615850e-47 |
| Msa0776660 | Msa1102210 | 0.831002 | 2.136266e-55 | -8.615850e-47 |
| Msa0776660 | Msa1110900 | 0.827802 | 1.279207e-54 | -8.615850e-47 |
| Msa0776660 | Msa1115980 | 0.830528 | 2.791018e-55 | -8.615850e-47 |
| Msa0776660 | Msa1120580 | 0.817804 | 2.726817e-52 | -8.615850e-47 |
| Msa0776660 | Msa1131120 | 0.828244 | 1.001430e-54 | -8.615850e-47 |
| Msa0776660 | Msa1136630 | 0.804229 | 2.387713e-49 | -8.615850e-47 |
| Msa0776660 | Msa1154570 | 0.812941 | 3.290045e-51 | -8.615850e-47 |
| Msa0776660 | Msa1162430 | 0.824935 | 6.163771e-54 | -8.615850e-47 |
| Msa0776660 | Msa1165660 | 0.801072 | 1.069673e-48 | -8.615850e-47 |
| Msa0776660 | Msa1185270 | 0.800696 | 1.276654e-48 | -8.615850e-47 |
| Msa0776660 | Msa1211610 | 0.804194 | 2.428052e-49 | -8.615850e-47 |
| Msa0776660 | Msa1223990 | 0.811705 | 6.125890e-51 | -8.615850e-47 |
| Msa0776660 | Msa1239050 | 0.818823 | 1.603191e-52 | -8.615850e-47 |
| Msa0776660 | Msa1263110 | 0.810743 | 9.904836e-51 | -8.615850e-47 |
| Msa0776660 | Msa1303400 | 0.811381 | 7.203097e-51 | -8.615850e-47 |
| Msa0776660 | Msa1319760 | 0.832197 | 1.084453e-55 | -8.615850e-47 |
| Msa0776660 | Msa1320160 | 0.802816 | 4.687738e-49 | -8.615850e-47 |
| Msa0776660 | Msa1364690 | 0.814480 | 1.508263e-51 | -8.615850e-47 |
| Msa0776660 | Msa1390200 | 0.812221 | 4.729010e-51 | -8.615850e-47 |
| Msa0776660 | Msa1427000 | 0.823781 | 1.151114e-53 | -8.615850e-47 |
| Msa0776660 | Msa1437590 | 0.810474 | 1.132096e-50 | -8.615850e-47 |
| Msa0776660 | Msa1439780 | 0.826865 | 2.145768e-54 | -8.615850e-47 |
| Msa0776660 | Msa1463640 | 0.800929 | 1.144243e-48 | -8.615850e-47 |
| Msa0126430 | Msa0776660 | 0.836080 | 1.154019e-56 | -8.615850e-47 |
| Msa0129290 | Msa0776660 | 0.828058 | 1.110295e-54 | -8.615850e-47 |
| Msa0143830 | Msa0776660 | 0.804194 | 2.428591e-49 | -8.615850e-47 |
| Msa0186240 | Msa0776660 | 0.837354 | 5.460416e-57 | -8.615850e-47 |
| Msa0200090 | Msa0776660 | 0.800177 | 1.628414e-48 | -8.615850e-47 |
| Msa0370360 | Msa0776660 | 0.803826 | 2.896332e-49 | -8.615850e-47 |
| Msa0390200 | Msa0776660 | 0.813712 | 2.227573e-51 | -8.615850e-47 |
| Msa0420890 | Msa0776660 | 0.814276 | 1.673094e-51 | -8.615850e-47 |
| Msa0422740 | Msa0776660 | 0.806625 | 7.509964e-50 | -8.615850e-47 |
| Msa0433090 | Msa0776660 | 0.807754 | 4.330993e-50 | -8.615850e-47 |
| Msa0434300 | Msa0776660 | 0.829034 | 6.450614e-55 | -8.615850e-47 |
| Msa0434400 | Msa0776660 | 0.807612 | 4.643024e-50 | -8.615850e-47 |
| Msa0438520 | Msa0776660 | 0.822962 | 1.789178e-53 | -8.615850e-47 |
| Msa0478080 | Msa0776660 | 0.842496 | 2.496437e-58 | -8.615850e-47 |
| Msa0242720 | Msa0776660 | 0.844576 | 6.941862e-59 | -8.615850e-47 |
| Msa0271700 | Msa0776660 | 0.832560 | 8.819239e-56 | -8.615850e-47 |
| Msa0271720 | Msa0776660 | 0.828913 | 6.901773e-55 | -8.615850e-47 |
| Msa0275730 | Msa0776660 | 0.817044 | 4.043554e-52 | -8.615850e-47 |
| Msa0281000 | Msa0776660 | 0.802744 | 4.852163e-49 | -8.615850e-47 |
| Msa0310190 | Msa0776660 | 0.816590 | 5.112833e-52 | -8.615850e-47 |
| Msa0320170 | Msa0776660 | 0.828843 | 7.176082e-55 | -8.615850e-47 |
| Msa0324810 | Msa0776660 | 0.807032 | 6.162931e-50 | -8.615850e-47 |
| Msa0336550 | Msa0776660 | -0.818314 | 2.091332e-52 | -8.615850e-47 |
| Msa0497690 | Msa0776660 | 0.800605 | 1.332872e-48 | -8.615850e-47 |
| Msa0512280 | Msa0776660 | 0.819559 | 1.089892e-52 | -8.615850e-47 |
| Msa0514750 | Msa0776660 | 0.809532 | 1.806235e-50 | -8.615850e-47 |
| Msa0522140 | Msa0776660 | 0.836366 | 9.758235e-57 | -8.615850e-47 |
| Msa0522170 | Msa0776660 | 0.839055 | 1.992302e-57 | -8.615850e-47 |
| Msa0524710 | Msa0776660 | 0.810507 | 1.113803e-50 | -8.615850e-47 |
| Msa0557240 | Msa0776660 | 0.848090 | 7.650491e-60 | -8.615850e-47 |
| Msa0557250 | Msa0776660 | 0.828870 | 7.067787e-55 | -8.615850e-47 |
| Msa0561110 | Msa0776660 | 0.817564 | 3.088900e-52 | -8.615850e-47 |
| Msa0561830 | Msa0776660 | 0.811664 | 6.253715e-51 | -8.615850e-47 |
| Msa0587730 | Msa0776660 | 0.805871 | 1.082752e-49 | -8.615850e-47 |
| Msa0589000 | Msa0776660 | 0.820450 | 6.814117e-53 | -8.615850e-47 |
| Msa0589060 | Msa0776660 | 0.831593 | 1.528575e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776660 | MtrunA17_Chr5g0448361 | 95.225 | 712 | 30 | 1 | 1 | 712 | 1 | 708 | 0.0 | 1401 |
| Msa0776660 | MtrunA17_Chr7g0264341 | 75.216 | 694 | 170 | 2 | 20 | 712 | 31 | 723 | 0.0 | 1078 |
| Msa0776660 | MtrunA17_Chr7g0264351 | 74.928 | 694 | 172 | 2 | 20 | 712 | 31 | 723 | 0.0 | 1077 |
| Msa0776660 | MtrunA17_Chr7g0264311 | 75.072 | 694 | 171 | 2 | 20 | 712 | 31 | 723 | 0.0 | 1077 |
| Msa0776660 | MtrunA17_Chr1g0181091 | 74.422 | 692 | 175 | 2 | 22 | 712 | 21 | 711 | 0.0 | 1074 |
| Msa0776660 | MtrunA17_Chr1g0199551 | 69.417 | 703 | 213 | 2 | 11 | 712 | 20 | 721 | 0.0 | 1025 |
| Msa0776660 | MtrunA17_Chr2g0326921 | 67.239 | 699 | 223 | 5 | 17 | 712 | 2 | 697 | 0.0 | 947 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776660 | AT2G37040.1 | 71.591 | 704 | 195 | 3 | 10 | 712 | 25 | 724 | 0.0 | 1056 |
| Msa0776660 | AT3G53260.1 | 71.429 | 693 | 196 | 2 | 21 | 712 | 25 | 716 | 0.0 | 1047 |
| Msa0776660 | AT3G10340.1 | 71.306 | 697 | 196 | 4 | 18 | 712 | 12 | 706 | 0.0 | 1018 |
| Msa0776660 | AT5G04230.1 | 67.241 | 696 | 210 | 8 | 21 | 712 | 12 | 693 | 0.0 | 936 |
| Msa0776660 | AT5G04230.2 | 66.857 | 700 | 210 | 9 | 21 | 712 | 12 | 697 | 0.0 | 930 |
Find 175 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGTATTCTTATTATTTA+TGG | 0.081070 | 5_2:-55027834 | None:intergenic |
| TCTTCAACATTTGAGAAAAT+TGG | 0.164220 | 5_2:+55027857 | Msa0776660:CDS |
| GACAAAGGTACTCCAATTTA+TGG | 0.176537 | 5_2:+55026054 | Msa0776660:CDS |
| GCTCATGTCGTCCACATATT+TGG | 0.218922 | 5_2:+55027547 | Msa0776660:CDS |
| CATTTAGCAGGACTGAATTC+TGG | 0.221247 | 5_2:+55026738 | Msa0776660:CDS |
| TAAACATTTGCAGATTATAT+TGG | 0.237879 | 5_2:-55028160 | None:intergenic |
| AATCGAGGCTGCTGCTATTA+TGG | 0.246073 | 5_2:+55026965 | Msa0776660:CDS |
| CAACGGGTATGTAACATTAA+AGG | 0.253456 | 5_2:-55027765 | None:intergenic |
| TGAAATTCCAAACAGAATTA+AGG | 0.263615 | 5_2:+55027958 | Msa0776660:CDS |
| TCACTTGAAACATCAATTAG+AGG | 0.292963 | 5_2:-55027173 | None:intergenic |
| ACCCTTCTACAAGGCTATTC+AGG | 0.297999 | 5_2:+55026519 | Msa0776660:CDS |
| CTACATTCCTTAATTCTGTT+TGG | 0.299095 | 5_2:-55027965 | None:intergenic |
| CGTTTAGCTATTGCTTCAAT+TGG | 0.305513 | 5_2:+55027257 | Msa0776660:CDS |
| CAGAATTCAGTCCTGCTAAA+TGG | 0.305857 | 5_2:-55026737 | None:intergenic |
| AAACATTTGCAGATTATATT+GGG | 0.308469 | 5_2:-55028159 | None:intergenic |
| AACCAAGATGTGAACTCTTT+GGG | 0.312804 | 5_2:+55027479 | Msa0776660:CDS |
| AGCTATTGACTTGAGGCATT+TGG | 0.314090 | 5_2:+55027583 | Msa0776660:CDS |
| GCAAGATTGGTGTGACATTA+TGG | 0.314561 | 5_2:-55026584 | None:intergenic |
| CAAGAGCAGCTATGCTTGTC+AGG | 0.318836 | 5_2:+55026490 | Msa0776660:CDS |
| GAAGGCCTTGCTCTTGTAAA+TGG | 0.322531 | 5_2:+55026783 | Msa0776660:CDS |
| TATCTCCCTTTCAATCGATT+TGG | 0.337613 | 5_2:-55027132 | None:intergenic |
| CTTGCACTTTCAACTTCCTT+TGG | 0.340425 | 5_2:-55027911 | None:intergenic |
| CAACCAAGATGTGAACTCTT+TGG | 0.345139 | 5_2:+55027478 | Msa0776660:CDS |
| TCACCAAGGCATTCCAGAAT+TGG | 0.348827 | 5_2:-55028118 | None:intergenic |
| AGAAACCCAAGTCTGGATTA+TGG | 0.349211 | 5_2:+55027359 | Msa0776660:CDS |
| TAAAGTACTTGCTTTAGTTT+CGG | 0.350006 | 5_2:-55027791 | None:intergenic |
| CGCGGCACAGTTACCGCTTC+CGG | 0.352856 | 5_2:+55026612 | Msa0776660:CDS |
| TCAAGTGATAAGGCTCTAAA+TGG | 0.353108 | 5_2:+55027188 | Msa0776660:CDS |
| GTGAGGGAAGAACTGAAGAT+AGG | 0.353501 | 5_2:+55028010 | Msa0776660:CDS |
| GTGATATGTCTTGGTGGGGT+GGG | 0.355117 | 5_2:+55025910 | Msa0776660:CDS |
| TTCTGGAATGCCTTGGTGAT+TGG | 0.363836 | 5_2:+55028122 | Msa0776660:CDS |
| GACATTATGGTTGAGGAGTT+TGG | 0.363956 | 5_2:-55026571 | None:intergenic |
| TAACAGTAGCTCACATGTTA+AGG | 0.373118 | 5_2:+55025966 | Msa0776660:CDS |
| AAAGATTGTTGATCCAATTC+TGG | 0.384374 | 5_2:+55028105 | Msa0776660:CDS |
| CCAGTGGTAACACCATAAAT+TGG | 0.386376 | 5_2:-55026066 | None:intergenic |
| CTCTTCAGAAGGAGATGGTT+AGG | 0.390238 | 5_2:+55026130 | Msa0776660:CDS |
| AACGGGTATGTAACATTAAA+GGG | 0.397076 | 5_2:-55027764 | None:intergenic |
| CAATCGATTTGGTTGAAAAC+CGG | 0.398842 | 5_2:-55027121 | None:intergenic |
| GTCCACAGATTGAAGTTATC+CGG | 0.407217 | 5_2:+55027102 | Msa0776660:CDS |
| AATTTCCAAGGCACCCCAAT+TGG | 0.407679 | 5_2:+55027215 | Msa0776660:CDS |
| TATGGTGTTACCACTGGCTT+TGG | 0.409618 | 5_2:+55026072 | Msa0776660:CDS |
| TACATCGCTGCATTGCTAAC+TGG | 0.413117 | 5_2:+55026654 | Msa0776660:CDS |
| ATTTAGCAGGACTGAATTCT+GGG | 0.415023 | 5_2:+55026739 | Msa0776660:CDS |
| TGCTGGTAGAAACCCAAGTC+TGG | 0.415807 | 5_2:+55027352 | Msa0776660:CDS |
| TGCTAAATGGAAAGCTTCCT+TGG | 0.419980 | 5_2:-55026724 | None:intergenic |
| AATTGATGTTTCAAGTGATA+AGG | 0.422344 | 5_2:+55027178 | Msa0776660:CDS |
| CCCGTTGTTATACAAGTCAT+TGG | 0.424937 | 5_2:-55027312 | None:intergenic |
| TGGATCTGGCGTTGCTTCTA+CGG | 0.429543 | 5_2:+55026815 | Msa0776660:CDS |
| CTCTCAGAGTCTGCAAGGGC+TGG | 0.432920 | 5_2:+55025994 | Msa0776660:CDS |
| TTGACTCAGACCCTTTGAAC+TGG | 0.437290 | 5_2:+55025812 | Msa0776660:CDS |
| AAGGAAGCTTTCCATTTAGC+AGG | 0.438602 | 5_2:+55026726 | Msa0776660:CDS |
| GCTTTAGTTTCGGCATCAAC+GGG | 0.438751 | 5_2:-55027781 | None:intergenic |
| TGATATGTCTTGGTGGGGTG+GGG | 0.438962 | 5_2:+55025911 | Msa0776660:CDS |
| TCCCTCACAAACCTGTATAG+TGG | 0.440843 | 5_2:-55027995 | None:intergenic |
| CAGCTGAATTCCAGTTCAAA+GGG | 0.442428 | 5_2:-55025822 | None:intergenic |
| CTAGGCTTCTGCAATGGATC+GGG | 0.445249 | 5_2:-55027038 | None:intergenic |
| CTTGTAAATGGCACAGCTGT+TGG | 0.447001 | 5_2:+55026795 | Msa0776660:CDS |
| CCAATTTATGGTGTTACCAC+TGG | 0.450686 | 5_2:+55026066 | Msa0776660:CDS |
| AATGTTTAACAATAATTAGC+AGG | 0.455642 | 5_2:+55028175 | Msa0776660:three_prime_UTR |
| TGCCTGAATAGCCTTGTAGA+AGG | 0.455922 | 5_2:-55026521 | None:intergenic |
| AAACTCCAATTGGGGTGCCT+TGG | 0.458485 | 5_2:-55027220 | None:intergenic |
| TATCCATCGAAACTCCAATT+GGG | 0.459183 | 5_2:-55027229 | None:intergenic |
| TGCTTTAGTTTCGGCATCAA+CGG | 0.459822 | 5_2:-55027782 | None:intergenic |
| TGAGGGAAGAACTGAAGATA+GGG | 0.463683 | 5_2:+55028011 | Msa0776660:CDS |
| ATAAGATGATGTGTAAATTC+CGG | 0.470007 | 5_2:-55026915 | None:intergenic |
| AAGGTTTAAGTAGAGGGAAG+TGG | 0.471020 | 5_2:-55025681 | None:intergenic |
| TTATCCATCGAAACTCCAAT+TGG | 0.473631 | 5_2:-55027230 | None:intergenic |
| TCTAGGCTTCTGCAATGGAT+CGG | 0.477349 | 5_2:-55027039 | None:intergenic |
| CCAATGACTTGTATAACAAC+GGG | 0.481658 | 5_2:+55027312 | Msa0776660:CDS |
| TTTCAACCAAATCGATTGAA+AGG | 0.483319 | 5_2:+55027126 | Msa0776660:CDS |
| AATGGCACAGCTGTTGGATC+TGG | 0.484897 | 5_2:+55026801 | Msa0776660:CDS |
| GCGGTAACTGTGCCGCGTAA+TGG | 0.485660 | 5_2:-55026606 | None:intergenic |
| GCAGCTGAATTCCAGTTCAA+AGG | 0.486076 | 5_2:-55025823 | None:intergenic |
| AGTGATATGTCTTGGTGGGG+TGG | 0.492325 | 5_2:+55025909 | Msa0776660:CDS |
| CAAACAGAATTAAGGAATGT+AGG | 0.494853 | 5_2:+55027966 | Msa0776660:CDS |
| TTCAACCAAATCGATTGAAA+GGG | 0.496434 | 5_2:+55027127 | Msa0776660:CDS |
| TAAGGCCTCTGAAGTTGCCA+TGG | 0.497043 | 5_2:+55027385 | Msa0776660:CDS |
| TATTGACTTGAGGCATTTGG+AGG | 0.499079 | 5_2:+55027586 | Msa0776660:CDS |
| ACAAGAGCAAGGCCTTCCTT+CGG | 0.501581 | 5_2:-55026777 | None:intergenic |
| ATTTGCAGATTATATTGGGA+TGG | 0.503269 | 5_2:-55028155 | None:intergenic |
| TGAAGTCATGCAAGGGAAGC+CGG | 0.504364 | 5_2:+55026896 | Msa0776660:CDS |
| AGGGTTGCTGACAGGAGAAA+AGG | 0.505444 | 5_2:+55028030 | Msa0776660:CDS |
| ACCCCAAAGAGTTCACATCT+TGG | 0.506444 | 5_2:-55027481 | None:intergenic |
| ACACAAGCTGAAGTTCCATC+CGG | 0.506990 | 5_2:+55026938 | Msa0776660:CDS |
| GTAGGTCATACCCACTATAC+AGG | 0.507329 | 5_2:+55027984 | Msa0776660:CDS |
| CAGCTGCAAATTCACTCAAA+GGG | 0.507593 | 5_2:+55025839 | Msa0776660:CDS |
| CAAAGGAAGTTGAAAGTGCA+AGG | 0.513174 | 5_2:+55027912 | Msa0776660:CDS |
| CTACCAGCAGAAAGATTTGA+GGG | 0.514551 | 5_2:-55027338 | None:intergenic |
| AAACTTGTTTATAATTCTGT+TGG | 0.514588 | 5_2:+55028253 | Msa0776660:three_prime_UTR |
| CTGCCCTCAAATCTTTCTGC+TGG | 0.518283 | 5_2:+55027335 | Msa0776660:CDS |
| TTTGCAGATTATATTGGGAT+GGG | 0.520814 | 5_2:-55028154 | None:intergenic |
| AGGAATTAGATCACCGGAAG+CGG | 0.521923 | 5_2:-55026625 | None:intergenic |
| AGGCGAAATTCCAGAGCTGT+TGG | 0.522740 | 5_2:+55026678 | Msa0776660:CDS |
| CACCCCAATTGGAGTTTCGA+TGG | 0.523805 | 5_2:+55027226 | Msa0776660:CDS |
| CTTTGCTCTTCAGAAGGAGA+TGG | 0.526889 | 5_2:+55026125 | Msa0776660:CDS |
| CTTTGCACATGACTTGTCAC+AGG | 0.528425 | 5_2:-55027443 | None:intergenic |
| CTCTTGTAACTTCTCCTCAA+TGG | 0.530704 | 5_2:+55027075 | Msa0776660:CDS |
| ATTAAAGGGATCATCTATGT+AGG | 0.532990 | 5_2:-55027750 | None:intergenic |
| AGTTAGCAATGCAGCGATGT+AGG | 0.533174 | 5_2:-55026652 | None:intergenic |
| TCTACCAGCAGAAAGATTTG+AGG | 0.533460 | 5_2:-55027339 | None:intergenic |
| TAAAACCATAATCCAGACTT+GGG | 0.534876 | 5_2:-55027364 | None:intergenic |
| TGCAAGGGTTGCATTTGAGA+AGG | 0.540341 | 5_2:+55027928 | Msa0776660:CDS |
| GTGATAAGGCTCTAAATGGT+GGG | 0.542827 | 5_2:+55027192 | Msa0776660:CDS |
| GTGCCGCGTAATGGCAAGAT+TGG | 0.543378 | 5_2:-55026597 | None:intergenic |
| AAGAAGCCAGTGATATGTCT+TGG | 0.546680 | 5_2:+55025901 | Msa0776660:CDS |
| TCAGCTGCAAATTCACTCAA+AGG | 0.547357 | 5_2:+55025838 | Msa0776660:CDS |
| GGGGACACTAACTATATCTC+AGG | 0.553366 | 5_2:+55025930 | Msa0776660:CDS |
| CCCTCACAAACCTGTATAGT+GGG | 0.553390 | 5_2:-55027994 | None:intergenic |
| ATCTGTGGACCGAGCCATTG+AGG | 0.553900 | 5_2:-55027089 | None:intergenic |
| CTGAAGATAGGGTTGCTGAC+AGG | 0.554777 | 5_2:+55028022 | Msa0776660:CDS |
| GTAACTTCTCCTCAATGGCT+CGG | 0.557606 | 5_2:+55027080 | Msa0776660:CDS |
| AGTGATAAGGCTCTAAATGG+TGG | 0.559859 | 5_2:+55027191 | Msa0776660:CDS |
| AAGATAAATATAATCATGTG+TGG | 0.565530 | 5_2:+55028314 | Msa0776660:three_prime_UTR |
| TTAAAACCATAATCCAGACT+TGG | 0.567038 | 5_2:-55027365 | None:intergenic |
| TTGAGCTCTCAGAGTCTGCA+AGG | 0.568731 | 5_2:+55025989 | Msa0776660:CDS |
| TTGTTCAGTTCTTCTATGTG+AGG | 0.570273 | 5_2:-55026100 | None:intergenic |
| AAAAGAGTCTCTTAATGCCA+AGG | 0.570402 | 5_2:+55026707 | Msa0776660:CDS |
| TTCGAGTTGAAGCCGAAGGA+AGG | 0.571632 | 5_2:+55026765 | Msa0776660:CDS |
| TTCAGAACAATATGCAGCCA+TGG | 0.573180 | 5_2:-55027402 | None:intergenic |
| CTAAATGGTGGGAATTTCCA+AGG | 0.574643 | 5_2:+55027203 | Msa0776660:CDS |
| ACAAGGCTTTGCTCTTCAGA+AGG | 0.576521 | 5_2:+55026119 | Msa0776660:CDS |
| GCAGAGTGCAACCAAATATG+TGG | 0.576865 | 5_2:-55027558 | None:intergenic |
| ATTCATATAAAAGCTAAACA+TGG | 0.579316 | 5_2:-55028217 | None:intergenic |
| GCCTGAATAGCCTTGTAGAA+GGG | 0.579660 | 5_2:-55026520 | None:intergenic |
| GCAAGGGTTGCATTTGAGAA+GGG | 0.582509 | 5_2:+55027929 | Msa0776660:CDS |
| ATCTAGCTGCGAGTGGATCG+CGG | 0.583942 | 5_2:+55026023 | Msa0776660:CDS |
| GATCCAATTCTGGAATGCCT+TGG | 0.586654 | 5_2:+55028115 | Msa0776660:CDS |
| ACCAAGATGTGAACTCTTTG+GGG | 0.587468 | 5_2:+55027480 | Msa0776660:CDS |
| AAGCCAGTGATATGTCTTGG+TGG | 0.587874 | 5_2:+55025904 | Msa0776660:CDS |
| AATGCCTCAAGTCAATAGCT+TGG | 0.587899 | 5_2:-55027580 | None:intergenic |
| ACCCACTATACAGGTTTGTG+AGG | 0.588985 | 5_2:+55027993 | Msa0776660:CDS |
| GCCAATGACTTGTATAACAA+CGG | 0.592645 | 5_2:+55027311 | Msa0776660:CDS |
| AGTTCAAAGGGTCTGAGTCA+AGG | 0.597126 | 5_2:-55025810 | None:intergenic |
| CAGCCTCGATTTGACCCGGA+TGG | 0.598345 | 5_2:-55026953 | None:intergenic |
| ACCCCACCAAGACATATCAC+TGG | 0.599416 | 5_2:-55025907 | None:intergenic |
| GACATTAATCATAGATGACA+TGG | 0.600157 | 5_2:+55027658 | Msa0776660:CDS |
| TGCAGCCATGGCAACTTCAG+AGG | 0.600459 | 5_2:-55027390 | None:intergenic |
| TTCATATAAAAGCTAAACAT+GGG | 0.605505 | 5_2:-55028216 | None:intergenic |
| CACAAGCTGAAGTTCCATCC+GGG | 0.607305 | 5_2:+55026939 | Msa0776660:CDS |
| AGCCAGTGATATGTCTTGGT+GGG | 0.607306 | 5_2:+55025905 | Msa0776660:CDS |
| GTTCTTCGAGTTGAAGCCGA+AGG | 0.609153 | 5_2:+55026761 | Msa0776660:CDS |
| ACTGAAGTCTCTATTGCCAA+AGG | 0.615652 | 5_2:+55027895 | Msa0776660:CDS |
| AGATAAATATAATCATGTGT+GGG | 0.616087 | 5_2:+55028315 | Msa0776660:three_prime_UTR |
| GTATGACTACGAGGAACAGA+AGG | 0.617578 | 5_2:-55025709 | None:intergenic |
| TTGGTGTGACATTATGGTTG+AGG | 0.620076 | 5_2:-55026578 | None:intergenic |
| AACCGGATAACTTCAATCTG+TGG | 0.620117 | 5_2:-55027104 | None:intergenic |
| ACACCAATCTTGCCATTACG+CGG | 0.623972 | 5_2:+55026594 | Msa0776660:CDS |
| AAAGGATGTTACACCAGATG+AGG | 0.624964 | 5_2:+55028048 | Msa0776660:CDS |
| AAGTACAAACTCTACAAACA+TGG | 0.626200 | 5_2:+55025738 | Msa0776660:exon |
| CTGTGCCATTTACAAGAGCA+AGG | 0.628462 | 5_2:-55026788 | None:intergenic |
| GCTGCTCTTGTTGCTGACGA+AGG | 0.628755 | 5_2:-55026477 | None:intergenic |
| GTGTTGAATCTAGCTGCGAG+TGG | 0.630485 | 5_2:+55026016 | Msa0776660:CDS |
| GGACAGAGGAATTAGATCAC+CGG | 0.631506 | 5_2:-55026631 | None:intergenic |
| TGAGCTCTCAGAGTCTGCAA+GGG | 0.636053 | 5_2:+55025990 | Msa0776660:CDS |
| ATCCATCGAAACTCCAATTG+GGG | 0.640649 | 5_2:-55027228 | None:intergenic |
| AAGAGCAGCTATGCTTGTCA+GGG | 0.640694 | 5_2:+55026491 | Msa0776660:CDS |
| TCGCTGCATTGCTAACTGGT+AGG | 0.643237 | 5_2:+55026658 | Msa0776660:CDS |
| GCAGCAGCCTCGATTTGACC+CGG | 0.643264 | 5_2:-55026957 | None:intergenic |
| GCCAGTGATATGTCTTGGTG+GGG | 0.645581 | 5_2:+55025906 | Msa0776660:CDS |
| AGGGTTAATACCCTTCTACA+AGG | 0.647865 | 5_2:+55026510 | Msa0776660:CDS |
| GTTCCATCCGGGTCAAATCG+AGG | 0.649287 | 5_2:+55026950 | Msa0776660:CDS |
| TGAGGAAAATTTGCTCAAAG+TGG | 0.651056 | 5_2:+55027706 | Msa0776660:CDS |
| TCTGCCAAGCTATTGACTTG+AGG | 0.654017 | 5_2:+55027576 | Msa0776660:CDS |
| TCACATAGAAGAACTGAACA+AGG | 0.655320 | 5_2:+55026102 | Msa0776660:CDS |
| CCCACTATACAGGTTTGTGA+GGG | 0.659277 | 5_2:+55027994 | Msa0776660:CDS |
| AAAGGAAGTTGAAAGTGCAA+GGG | 0.662059 | 5_2:+55027913 | Msa0776660:CDS |
| GAATGCCTTGGTGATTGGAA+AGG | 0.664169 | 5_2:+55028127 | Msa0776660:CDS |
| TGAGGCAGCACCAAAGCCAG+TGG | 0.666779 | 5_2:-55026082 | None:intergenic |
| GATTTCTGCTTTGAAAACAG+TGG | 0.668764 | 5_2:+55027505 | Msa0776660:CDS |
| CTTTGAATTGTATGACTACG+AGG | 0.673856 | 5_2:-55025718 | None:intergenic |
| GAGAAGTTACAAGAGCGTAA+CGG | 0.674364 | 5_2:-55027067 | None:intergenic |
| TAATCCATTTAGATTCTGTG+AGG | 0.685362 | 5_2:+55027688 | Msa0776660:CDS |
| ATCGCGGAAAACATTGACAA+AGG | 0.691087 | 5_2:+55026039 | Msa0776660:CDS |
| GAACTCCTTTCCAATCACCA+AGG | 0.723073 | 5_2:-55028132 | None:intergenic |
| AATGCAGCGATGTAGGACAG+AGG | 0.731936 | 5_2:-55026645 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAAAACTATTTCTAAAA+GGG | - | chr5_2:55026197-55026216 | None:intergenic | 15.0% |
| !!! | AATACTGATAATTATTCTTT+TGG | + | chr5_2:55026379-55026398 | Msa0776660:intron | 15.0% |
| !! | TTTCGTATTCTTATTATTTA+TGG | - | chr5_2:55027837-55027856 | None:intergenic | 15.0% |
| !!! | GCTAAAAAACTATTTCTAAA+AGG | - | chr5_2:55026198-55026217 | None:intergenic | 20.0% |
| !!! | TAAATCATTTTTCTTTCACA+AGG | + | chr5_2:55026403-55026422 | Msa0776660:intron | 20.0% |
| !!! | TTTTTAAACTGTGCAATATT+TGG | + | chr5_2:55026426-55026445 | Msa0776660:CDS | 20.0% |
| !!! | TTTTAAACTGTGCAATATTT+GGG | + | chr5_2:55026427-55026446 | Msa0776660:CDS | 20.0% |
| !! | AAACATTTGCAGATTATATT+GGG | - | chr5_2:55028162-55028181 | None:intergenic | 20.0% |
| !! | TAAACATTTGCAGATTATAT+TGG | - | chr5_2:55028163-55028182 | None:intergenic | 20.0% |
| !! | AATGTTTAACAATAATTAGC+AGG | + | chr5_2:55028175-55028194 | Msa0776660:three_prime_UTR | 20.0% |
| !! | TTCATATAAAAGCTAAACAT+GGG | - | chr5_2:55028219-55028238 | None:intergenic | 20.0% |
| !! | ATTCATATAAAAGCTAAACA+TGG | - | chr5_2:55028220-55028239 | None:intergenic | 20.0% |
| !!! | AAACTTGTTTATAATTCTGT+TGG | + | chr5_2:55028253-55028272 | Msa0776660:three_prime_UTR | 20.0% |
| !! | AAGATAAATATAATCATGTG+TGG | + | chr5_2:55028314-55028333 | Msa0776660:three_prime_UTR | 20.0% |
| !! | AGATAAATATAATCATGTGT+GGG | + | chr5_2:55028315-55028334 | Msa0776660:three_prime_UTR | 20.0% |
| !! | TACGTTTTACTTCATCAAAA+TGG | - | chr5_2:55025867-55025886 | None:intergenic | 25.0% |
| !! | TTTTGATGAAGTAAAACGTA+TGG | + | chr5_2:55025867-55025886 | Msa0776660:CDS | 25.0% |
| ! | AAATGAGATTGTTAGAGTTT+AGG | + | chr5_2:55026226-55026245 | Msa0776660:intron | 25.0% |
| ! | ATAAGATGATGTGTAAATTC+CGG | - | chr5_2:55026918-55026937 | None:intergenic | 25.0% |
| !! | ATTATGGAACACATTTTAGA+TGG | + | chr5_2:55026981-55027000 | Msa0776660:CDS | 25.0% |
| !! | AATTGATGTTTCAAGTGATA+AGG | + | chr5_2:55027178-55027197 | Msa0776660:CDS | 25.0% |
| !! | TAAAGTACTTGCTTTAGTTT+CGG | - | chr5_2:55027794-55027813 | None:intergenic | 25.0% |
| ! | TCTTCAACATTTGAGAAAAT+TGG | + | chr5_2:55027857-55027876 | Msa0776660:CDS | 25.0% |
| ! | TGAAATTCCAAACAGAATTA+AGG | + | chr5_2:55027958-55027977 | Msa0776660:CDS | 25.0% |
| !!! | GCTTTTAAGGTTTAAGTAGA+GGG | - | chr5_2:55025690-55025709 | None:intergenic | 30.0% |
| AAGTACAAACTCTACAAACA+TGG | + | chr5_2:55025738-55025757 | Msa0776660:exon | 30.0% | |
| !!! | ACATTTTTGGTGTCATTTTG+TGG | - | chr5_2:55025775-55025794 | None:intergenic | 30.0% |
| ! | CAAGTTTGAGCTAACATTTT+TGG | - | chr5_2:55025788-55025807 | None:intergenic | 30.0% |
| GCTTCAATTGCATAACAAAT+AGG | - | chr5_2:55026331-55026350 | None:intergenic | 30.0% | |
| TTTCAACCAAATCGATTGAA+AGG | + | chr5_2:55027126-55027145 | Msa0776660:CDS | 30.0% | |
| TTCAACCAAATCGATTGAAA+GGG | + | chr5_2:55027127-55027146 | Msa0776660:CDS | 30.0% | |
| TCACTTGAAACATCAATTAG+AGG | - | chr5_2:55027176-55027195 | None:intergenic | 30.0% | |
| TAAAACCATAATCCAGACTT+GGG | - | chr5_2:55027367-55027386 | None:intergenic | 30.0% | |
| TTAAAACCATAATCCAGACT+TGG | - | chr5_2:55027368-55027387 | None:intergenic | 30.0% | |
| !! | AAGTCTGGATTATGGTTTTA+AGG | + | chr5_2:55027367-55027386 | Msa0776660:CDS | 30.0% |
| ! | TACTGTAAGCAGAGTTTTTA+AGG | + | chr5_2:55027634-55027653 | Msa0776660:CDS | 30.0% |
| GACATTAATCATAGATGACA+TGG | + | chr5_2:55027658-55027677 | Msa0776660:CDS | 30.0% | |
| TAATCCATTTAGATTCTGTG+AGG | + | chr5_2:55027688-55027707 | Msa0776660:CDS | 30.0% | |
| ! | TTTTCCTCACAGAATCTAAA+TGG | - | chr5_2:55027695-55027714 | None:intergenic | 30.0% |
| ATTAAAGGGATCATCTATGT+AGG | - | chr5_2:55027753-55027772 | None:intergenic | 30.0% | |
| AACGGGTATGTAACATTAAA+GGG | - | chr5_2:55027767-55027786 | None:intergenic | 30.0% | |
| CTACATTCCTTAATTCTGTT+TGG | - | chr5_2:55027968-55027987 | None:intergenic | 30.0% | |
| CAAACAGAATTAAGGAATGT+AGG | + | chr5_2:55027966-55027985 | Msa0776660:CDS | 30.0% | |
| !!! | ACTTTTTCAAATTCCTCATC+TGG | - | chr5_2:55028064-55028083 | None:intergenic | 30.0% |
| AAAGATTGTTGATCCAATTC+TGG | + | chr5_2:55028105-55028124 | Msa0776660:CDS | 30.0% | |
| TTTGCAGATTATATTGGGAT+GGG | - | chr5_2:55028157-55028176 | None:intergenic | 30.0% | |
| ATTTGCAGATTATATTGGGA+TGG | - | chr5_2:55028158-55028177 | None:intergenic | 30.0% | |
| !!! | GGCTTTTAAGGTTTAAGTAG+AGG | - | chr5_2:55025691-55025710 | None:intergenic | 35.0% |
| CTTTGAATTGTATGACTACG+AGG | - | chr5_2:55025721-55025740 | None:intergenic | 35.0% | |
| !!! | GGTGTCATTTTGTGGATTAA+TGG | - | chr5_2:55025767-55025786 | None:intergenic | 35.0% |
| TAACAGTAGCTCACATGTTA+AGG | + | chr5_2:55025966-55025985 | Msa0776660:CDS | 35.0% | |
| !! | GACAAAGGTACTCCAATTTA+TGG | + | chr5_2:55026054-55026073 | Msa0776660:CDS | 35.0% |
| TTGTTCAGTTCTTCTATGTG+AGG | - | chr5_2:55026103-55026122 | None:intergenic | 35.0% | |
| TCACATAGAAGAACTGAACA+AGG | + | chr5_2:55026102-55026121 | Msa0776660:CDS | 35.0% | |
| ! | GCATTAAGAGACTCTTTTGA+GGG | - | chr5_2:55026705-55026724 | None:intergenic | 35.0% |
| AAAAGAGTCTCTTAATGCCA+AGG | + | chr5_2:55026707-55026726 | Msa0776660:CDS | 35.0% | |
| ATTTAGCAGGACTGAATTCT+GGG | + | chr5_2:55026739-55026758 | Msa0776660:CDS | 35.0% | |
| ! | TTTTCACTGAAGTCATGCAA+GGG | + | chr5_2:55026889-55026908 | Msa0776660:CDS | 35.0% |
| !! | CAATCGATTTGGTTGAAAAC+CGG | - | chr5_2:55027124-55027143 | None:intergenic | 35.0% |
| TATCTCCCTTTCAATCGATT+TGG | - | chr5_2:55027135-55027154 | None:intergenic | 35.0% | |
| !! | TCAAGTGATAAGGCTCTAAA+TGG | + | chr5_2:55027188-55027207 | Msa0776660:CDS | 35.0% |
| TATCCATCGAAACTCCAATT+GGG | - | chr5_2:55027232-55027251 | None:intergenic | 35.0% | |
| TTATCCATCGAAACTCCAAT+TGG | - | chr5_2:55027233-55027252 | None:intergenic | 35.0% | |
| CGTTTAGCTATTGCTTCAAT+TGG | + | chr5_2:55027257-55027276 | Msa0776660:CDS | 35.0% | |
| ! | GCCAATGACTTGTATAACAA+CGG | + | chr5_2:55027311-55027330 | Msa0776660:CDS | 35.0% |
| ! | CCAATGACTTGTATAACAAC+GGG | + | chr5_2:55027312-55027331 | Msa0776660:CDS | 35.0% |
| AACCAAGATGTGAACTCTTT+GGG | + | chr5_2:55027479-55027498 | Msa0776660:CDS | 35.0% | |
| !! | GATTTCTGCTTTGAAAACAG+TGG | + | chr5_2:55027505-55027524 | Msa0776660:CDS | 35.0% |
| ! | TGAGGAAAATTTGCTCAAAG+TGG | + | chr5_2:55027706-55027725 | Msa0776660:CDS | 35.0% |
| CAACGGGTATGTAACATTAA+AGG | - | chr5_2:55027768-55027787 | None:intergenic | 35.0% | |
| ! | TGAGAAAATTGGAGCTTTTG+AGG | + | chr5_2:55027868-55027887 | Msa0776660:CDS | 35.0% |
| ! | AAAGGAAGTTGAAAGTGCAA+GGG | + | chr5_2:55027913-55027932 | Msa0776660:CDS | 35.0% |
| CAGCTGAATTCCAGTTCAAA+GGG | - | chr5_2:55025825-55025844 | None:intergenic | 40.0% | |
| TCAGCTGCAAATTCACTCAA+AGG | + | chr5_2:55025838-55025857 | Msa0776660:CDS | 40.0% | |
| CAGCTGCAAATTCACTCAAA+GGG | + | chr5_2:55025839-55025858 | Msa0776660:CDS | 40.0% | |
| AAGAAGCCAGTGATATGTCT+TGG | + | chr5_2:55025901-55025920 | Msa0776660:CDS | 40.0% | |
| ATCGCGGAAAACATTGACAA+AGG | + | chr5_2:55026039-55026058 | Msa0776660:CDS | 40.0% | |
| CCAGTGGTAACACCATAAAT+TGG | - | chr5_2:55026069-55026088 | None:intergenic | 40.0% | |
| !! | CCAATTTATGGTGTTACCAC+TGG | + | chr5_2:55026066-55026085 | Msa0776660:CDS | 40.0% |
| AGGGTTAATACCCTTCTACA+AGG | + | chr5_2:55026510-55026529 | Msa0776660:CDS | 40.0% | |
| GACATTATGGTTGAGGAGTT+TGG | - | chr5_2:55026574-55026593 | None:intergenic | 40.0% | |
| TTGGTGTGACATTATGGTTG+AGG | - | chr5_2:55026581-55026600 | None:intergenic | 40.0% | |
| GCAAGATTGGTGTGACATTA+TGG | - | chr5_2:55026587-55026606 | None:intergenic | 40.0% | |
| ! | GGCATTAAGAGACTCTTTTG+AGG | - | chr5_2:55026706-55026725 | None:intergenic | 40.0% |
| TGCTAAATGGAAAGCTTCCT+TGG | - | chr5_2:55026727-55026746 | None:intergenic | 40.0% | |
| AAGGAAGCTTTCCATTTAGC+AGG | + | chr5_2:55026726-55026745 | Msa0776660:CDS | 40.0% | |
| CAGAATTCAGTCCTGCTAAA+TGG | - | chr5_2:55026740-55026759 | None:intergenic | 40.0% | |
| CATTTAGCAGGACTGAATTC+TGG | + | chr5_2:55026738-55026757 | Msa0776660:CDS | 40.0% | |
| ! | GTTTTCACTGAAGTCATGCA+AGG | + | chr5_2:55026888-55026907 | Msa0776660:CDS | 40.0% |
| ! | TCTTTTCTAGGCTTCTGCAA+TGG | - | chr5_2:55027047-55027066 | None:intergenic | 40.0% |
| ! | GAGAAGTTACAAGAGCGTAA+CGG | - | chr5_2:55027070-55027089 | None:intergenic | 40.0% |
| CTCTTGTAACTTCTCCTCAA+TGG | + | chr5_2:55027075-55027094 | Msa0776660:CDS | 40.0% | |
| GTCCACAGATTGAAGTTATC+CGG | + | chr5_2:55027102-55027121 | Msa0776660:CDS | 40.0% | |
| AACCGGATAACTTCAATCTG+TGG | - | chr5_2:55027107-55027126 | None:intergenic | 40.0% | |
| !! | AGTGATAAGGCTCTAAATGG+TGG | + | chr5_2:55027191-55027210 | Msa0776660:CDS | 40.0% |
| !! | GTGATAAGGCTCTAAATGGT+GGG | + | chr5_2:55027192-55027211 | Msa0776660:CDS | 40.0% |
| ! | CTAAATGGTGGGAATTTCCA+AGG | + | chr5_2:55027203-55027222 | Msa0776660:CDS | 40.0% |
| ATCCATCGAAACTCCAATTG+GGG | - | chr5_2:55027231-55027250 | None:intergenic | 40.0% | |
| CCCGTTGTTATACAAGTCAT+TGG | - | chr5_2:55027315-55027334 | None:intergenic | 40.0% | |
| CTACCAGCAGAAAGATTTGA+GGG | - | chr5_2:55027341-55027360 | None:intergenic | 40.0% | |
| TCTACCAGCAGAAAGATTTG+AGG | - | chr5_2:55027342-55027361 | None:intergenic | 40.0% | |
| AGAAACCCAAGTCTGGATTA+TGG | + | chr5_2:55027359-55027378 | Msa0776660:CDS | 40.0% | |
| TTCAGAACAATATGCAGCCA+TGG | - | chr5_2:55027405-55027424 | None:intergenic | 40.0% | |
| CAACCAAGATGTGAACTCTT+TGG | + | chr5_2:55027478-55027497 | Msa0776660:CDS | 40.0% | |
| ACCAAGATGTGAACTCTTTG+GGG | + | chr5_2:55027480-55027499 | Msa0776660:CDS | 40.0% | |
| AATGCCTCAAGTCAATAGCT+TGG | - | chr5_2:55027583-55027602 | None:intergenic | 40.0% | |
| !! | AGCTATTGACTTGAGGCATT+TGG | + | chr5_2:55027583-55027602 | Msa0776660:CDS | 40.0% |
| !! | TATTGACTTGAGGCATTTGG+AGG | + | chr5_2:55027586-55027605 | Msa0776660:CDS | 40.0% |
| ! | TGCTTTAGTTTCGGCATCAA+CGG | - | chr5_2:55027785-55027804 | None:intergenic | 40.0% |
| ACTGAAGTCTCTATTGCCAA+AGG | + | chr5_2:55027895-55027914 | Msa0776660:CDS | 40.0% | |
| CTTGCACTTTCAACTTCCTT+TGG | - | chr5_2:55027914-55027933 | None:intergenic | 40.0% | |
| ! | CAAAGGAAGTTGAAAGTGCA+AGG | + | chr5_2:55027912-55027931 | Msa0776660:CDS | 40.0% |
| TGAGGGAAGAACTGAAGATA+GGG | + | chr5_2:55028011-55028030 | Msa0776660:CDS | 40.0% | |
| AAAGGATGTTACACCAGATG+AGG | + | chr5_2:55028048-55028067 | Msa0776660:CDS | 40.0% | |
| ! | CGAGGAACAGAAGGCTTTTA+AGG | - | chr5_2:55025703-55025722 | None:intergenic | 45.0% |
| GTATGACTACGAGGAACAGA+AGG | - | chr5_2:55025712-55025731 | None:intergenic | 45.0% | |
| AGTTCAAAGGGTCTGAGTCA+AGG | - | chr5_2:55025813-55025832 | None:intergenic | 45.0% | |
| TTGACTCAGACCCTTTGAAC+TGG | + | chr5_2:55025812-55025831 | Msa0776660:CDS | 45.0% | |
| GCAGCTGAATTCCAGTTCAA+AGG | - | chr5_2:55025826-55025845 | None:intergenic | 45.0% | |
| AAGCCAGTGATATGTCTTGG+TGG | + | chr5_2:55025904-55025923 | Msa0776660:CDS | 45.0% | |
| AGCCAGTGATATGTCTTGGT+GGG | + | chr5_2:55025905-55025924 | Msa0776660:CDS | 45.0% | |
| GGGGACACTAACTATATCTC+AGG | + | chr5_2:55025930-55025949 | Msa0776660:CDS | 45.0% | |
| !! | TATGGTGTTACCACTGGCTT+TGG | + | chr5_2:55026072-55026091 | Msa0776660:CDS | 45.0% |
| ACAAGGCTTTGCTCTTCAGA+AGG | + | chr5_2:55026119-55026138 | Msa0776660:CDS | 45.0% | |
| CTTTGCTCTTCAGAAGGAGA+TGG | + | chr5_2:55026125-55026144 | Msa0776660:CDS | 45.0% | |
| CTCTTCAGAAGGAGATGGTT+AGG | + | chr5_2:55026130-55026149 | Msa0776660:CDS | 45.0% | |
| CAGAAGGAGATGGTTAGGTA+AGG | + | chr5_2:55026135-55026154 | Msa0776660:intron | 45.0% | |
| AAGAGCAGCTATGCTTGTCA+GGG | + | chr5_2:55026491-55026510 | Msa0776660:CDS | 45.0% | |
| ACCCTTCTACAAGGCTATTC+AGG | + | chr5_2:55026519-55026538 | Msa0776660:CDS | 45.0% | |
| !! | GCCTGAATAGCCTTGTAGAA+GGG | - | chr5_2:55026523-55026542 | None:intergenic | 45.0% |
| !! | TGCCTGAATAGCCTTGTAGA+AGG | - | chr5_2:55026524-55026543 | None:intergenic | 45.0% |
| ACACCAATCTTGCCATTACG+CGG | + | chr5_2:55026594-55026613 | Msa0776660:CDS | 45.0% | |
| AGGAATTAGATCACCGGAAG+CGG | - | chr5_2:55026628-55026647 | None:intergenic | 45.0% | |
| GGACAGAGGAATTAGATCAC+CGG | - | chr5_2:55026634-55026653 | None:intergenic | 45.0% | |
| AGTTAGCAATGCAGCGATGT+AGG | - | chr5_2:55026655-55026674 | None:intergenic | 45.0% | |
| TACATCGCTGCATTGCTAAC+TGG | + | chr5_2:55026654-55026673 | Msa0776660:CDS | 45.0% | |
| GAAGGCCTTGCTCTTGTAAA+TGG | + | chr5_2:55026783-55026802 | Msa0776660:CDS | 45.0% | |
| !! | CTGTGCCATTTACAAGAGCA+AGG | - | chr5_2:55026791-55026810 | None:intergenic | 45.0% |
| CTTGTAAATGGCACAGCTGT+TGG | + | chr5_2:55026795-55026814 | Msa0776660:CDS | 45.0% | |
| ! | TGCTTCTACGGTTCTTTTCG+AGG | + | chr5_2:55026827-55026846 | Msa0776660:CDS | 45.0% |
| ACACAAGCTGAAGTTCCATC+CGG | + | chr5_2:55026938-55026957 | Msa0776660:CDS | 45.0% | |
| AATCGAGGCTGCTGCTATTA+TGG | + | chr5_2:55026965-55026984 | Msa0776660:CDS | 45.0% | |
| TCTAGGCTTCTGCAATGGAT+CGG | - | chr5_2:55027042-55027061 | None:intergenic | 45.0% | |
| ! | AGAGCGTAACGGTCTTTTCT+AGG | - | chr5_2:55027059-55027078 | None:intergenic | 45.0% |
| GTAACTTCTCCTCAATGGCT+CGG | + | chr5_2:55027080-55027099 | Msa0776660:CDS | 45.0% | |
| ! | AATTTCCAAGGCACCCCAAT+TGG | + | chr5_2:55027215-55027234 | Msa0776660:CDS | 45.0% |
| ! | CTTTGCACATGACTTGTCAC+AGG | - | chr5_2:55027446-55027465 | None:intergenic | 45.0% |
| ACCCCAAAGAGTTCACATCT+TGG | - | chr5_2:55027484-55027503 | None:intergenic | 45.0% | |
| GCTCATGTCGTCCACATATT+TGG | + | chr5_2:55027547-55027566 | Msa0776660:CDS | 45.0% | |
| GCAGAGTGCAACCAAATATG+TGG | - | chr5_2:55027561-55027580 | None:intergenic | 45.0% | |
| !! | TCTGCCAAGCTATTGACTTG+AGG | + | chr5_2:55027576-55027595 | Msa0776660:CDS | 45.0% |
| ! | GCTTTAGTTTCGGCATCAAC+GGG | - | chr5_2:55027784-55027803 | None:intergenic | 45.0% |
| TGCAAGGGTTGCATTTGAGA+AGG | + | chr5_2:55027928-55027947 | Msa0776660:CDS | 45.0% | |
| GCAAGGGTTGCATTTGAGAA+GGG | + | chr5_2:55027929-55027948 | Msa0776660:CDS | 45.0% | |
| GTAGGTCATACCCACTATAC+AGG | + | chr5_2:55027984-55028003 | Msa0776660:CDS | 45.0% | |
| ACCCACTATACAGGTTTGTG+AGG | + | chr5_2:55027993-55028012 | Msa0776660:CDS | 45.0% | |
| CCCTCACAAACCTGTATAGT+GGG | - | chr5_2:55027997-55028016 | None:intergenic | 45.0% | |
| CCCACTATACAGGTTTGTGA+GGG | + | chr5_2:55027994-55028013 | Msa0776660:CDS | 45.0% | |
| TCCCTCACAAACCTGTATAG+TGG | - | chr5_2:55027998-55028017 | None:intergenic | 45.0% | |
| GTGAGGGAAGAACTGAAGAT+AGG | + | chr5_2:55028010-55028029 | Msa0776660:CDS | 45.0% | |
| !! | GATCCAATTCTGGAATGCCT+TGG | + | chr5_2:55028115-55028134 | Msa0776660:CDS | 45.0% |
| ! | TCACCAAGGCATTCCAGAAT+TGG | - | chr5_2:55028121-55028140 | None:intergenic | 45.0% |
| !! | TTCTGGAATGCCTTGGTGAT+TGG | + | chr5_2:55028122-55028141 | Msa0776660:CDS | 45.0% |
| ! | GAATGCCTTGGTGATTGGAA+AGG | + | chr5_2:55028127-55028146 | Msa0776660:CDS | 45.0% |
| GAACTCCTTTCCAATCACCA+AGG | - | chr5_2:55028135-55028154 | None:intergenic | 45.0% | |
| GCCAGTGATATGTCTTGGTG+GGG | + | chr5_2:55025906-55025925 | Msa0776660:CDS | 50.0% | |
| ACCCCACCAAGACATATCAC+TGG | - | chr5_2:55025910-55025929 | None:intergenic | 50.0% | |
| AGTGATATGTCTTGGTGGGG+TGG | + | chr5_2:55025909-55025928 | Msa0776660:CDS | 50.0% | |
| GTGATATGTCTTGGTGGGGT+GGG | + | chr5_2:55025910-55025929 | Msa0776660:CDS | 50.0% | |
| TGATATGTCTTGGTGGGGTG+GGG | + | chr5_2:55025911-55025930 | Msa0776660:CDS | 50.0% | |
| TTGAGCTCTCAGAGTCTGCA+AGG | + | chr5_2:55025989-55026008 | Msa0776660:CDS | 50.0% | |
| TGAGCTCTCAGAGTCTGCAA+GGG | + | chr5_2:55025990-55026009 | Msa0776660:CDS | 50.0% | |
| GTGTTGAATCTAGCTGCGAG+TGG | + | chr5_2:55026016-55026035 | Msa0776660:CDS | 50.0% | |
| CAAGAGCAGCTATGCTTGTC+AGG | + | chr5_2:55026490-55026509 | Msa0776660:CDS | 50.0% | |
| AATGCAGCGATGTAGGACAG+AGG | - | chr5_2:55026648-55026667 | None:intergenic | 50.0% | |
| TCGCTGCATTGCTAACTGGT+AGG | + | chr5_2:55026658-55026677 | Msa0776660:CDS | 50.0% | |
| AGGCGAAATTCCAGAGCTGT+TGG | + | chr5_2:55026678-55026697 | Msa0776660:CDS | 50.0% | |
| !! | TTTTGAGGGTCCAACAGCTC+TGG | - | chr5_2:55026691-55026710 | None:intergenic | 50.0% |
| !! | GTTCTTCGAGTTGAAGCCGA+AGG | + | chr5_2:55026761-55026780 | Msa0776660:CDS | 50.0% |
| !! | TTCGAGTTGAAGCCGAAGGA+AGG | + | chr5_2:55026765-55026784 | Msa0776660:CDS | 50.0% |
| ACAAGAGCAAGGCCTTCCTT+CGG | - | chr5_2:55026780-55026799 | None:intergenic | 50.0% | |
| AATGGCACAGCTGTTGGATC+TGG | + | chr5_2:55026801-55026820 | Msa0776660:CDS | 50.0% | |
| TGGATCTGGCGTTGCTTCTA+CGG | + | chr5_2:55026815-55026834 | Msa0776660:CDS | 50.0% | |
| TGAAGTCATGCAAGGGAAGC+CGG | + | chr5_2:55026896-55026915 | Msa0776660:CDS | 50.0% | |
| CACAAGCTGAAGTTCCATCC+GGG | + | chr5_2:55026939-55026958 | Msa0776660:CDS | 50.0% | |
| CTAGGCTTCTGCAATGGATC+GGG | - | chr5_2:55027041-55027060 | None:intergenic | 50.0% | |
| ! | AAACTCCAATTGGGGTGCCT+TGG | - | chr5_2:55027223-55027242 | None:intergenic | 50.0% |
| CACCCCAATTGGAGTTTCGA+TGG | + | chr5_2:55027226-55027245 | Msa0776660:CDS | 50.0% | |
| CTGCCCTCAAATCTTTCTGC+TGG | + | chr5_2:55027335-55027354 | Msa0776660:CDS | 50.0% | |
| TGCTGGTAGAAACCCAAGTC+TGG | + | chr5_2:55027352-55027371 | Msa0776660:CDS | 50.0% | |
| !! | TAAGGCCTCTGAAGTTGCCA+TGG | + | chr5_2:55027385-55027404 | Msa0776660:CDS | 50.0% |
| CTGAAGATAGGGTTGCTGAC+AGG | + | chr5_2:55028022-55028041 | Msa0776660:CDS | 50.0% | |
| AGGGTTGCTGACAGGAGAAA+AGG | + | chr5_2:55028030-55028049 | Msa0776660:CDS | 50.0% | |
| ATCTAGCTGCGAGTGGATCG+CGG | + | chr5_2:55026023-55026042 | Msa0776660:CDS | 55.0% | |
| GCTGCTCTTGTTGCTGACGA+AGG | - | chr5_2:55026480-55026499 | None:intergenic | 55.0% | |
| GTGCCGCGTAATGGCAAGAT+TGG | - | chr5_2:55026600-55026619 | None:intergenic | 55.0% | |
| GTTCCATCCGGGTCAAATCG+AGG | + | chr5_2:55026950-55026969 | Msa0776660:CDS | 55.0% | |
| ATCTGTGGACCGAGCCATTG+AGG | - | chr5_2:55027092-55027111 | None:intergenic | 55.0% | |
| TGCAGCCATGGCAACTTCAG+AGG | - | chr5_2:55027393-55027412 | None:intergenic | 55.0% | |
| CTCTCAGAGTCTGCAAGGGC+TGG | + | chr5_2:55025994-55026013 | Msa0776660:CDS | 60.0% | |
| TGAGGCAGCACCAAAGCCAG+TGG | - | chr5_2:55026085-55026104 | None:intergenic | 60.0% | |
| GCGGTAACTGTGCCGCGTAA+TGG | - | chr5_2:55026609-55026628 | None:intergenic | 60.0% | |
| ! | CAGCCTCGATTTGACCCGGA+TGG | - | chr5_2:55026956-55026975 | None:intergenic | 60.0% |
| ! | GCAGCAGCCTCGATTTGACC+CGG | - | chr5_2:55026960-55026979 | None:intergenic | 60.0% |
| CGCGGCACAGTTACCGCTTC+CGG | + | chr5_2:55026612-55026631 | Msa0776660:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 55025682 | 55028343 | 55025682 | ID=Msa0776660;Name=Msa0776660 |
| chr5_2 | mRNA | 55025682 | 55028343 | 55025682 | ID=Msa0776660-mRNA-1;Parent=Msa0776660;Name=Msa0776660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75|1|1|1|1|1|2|175|712 |
| chr5_2 | exon | 55025682 | 55026151 | 55025682 | ID=Msa0776660-mRNA-1:exon:16305;Parent=Msa0776660-mRNA-1 |
| chr5_2 | exon | 55026425 | 55028343 | 55026425 | ID=Msa0776660-mRNA-1:exon:16306;Parent=Msa0776660-mRNA-1 |
| chr5_2 | five_prime_UTR | 55025682 | 55025756 | 55025682 | ID=Msa0776660-mRNA-1:five_prime_utr;Parent=Msa0776660-mRNA-1 |
| chr5_2 | CDS | 55025757 | 55026151 | 55025757 | ID=Msa0776660-mRNA-1:cds;Parent=Msa0776660-mRNA-1 |
| chr5_2 | CDS | 55026425 | 55028168 | 55026425 | ID=Msa0776660-mRNA-1:cds;Parent=Msa0776660-mRNA-1 |
| chr5_2 | three_prime_UTR | 55028169 | 55028343 | 55028169 | ID=Msa0776660-mRNA-1:three_prime_utr;Parent=Msa0776660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
