AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0918080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0918080 MtrunA17_Chr6g0454211 87.137 482 44 1 1 464 291 772 0.0 839
Msa0918080 MtrunA17_Chr6g0454211 49.284 349 77 4 128 458 1 267 6.42e-97 308
Msa0918080 MtrunA17_Chr6g0454331 83.471 484 60 2 1 464 1 484 0.0 835
Msa0918080 MtrunA17_Chr6g0454291 82.881 479 64 1 1 461 1 479 0.0 798
Msa0918080 MtrunA17_Chr6g0454401 74.636 481 103 2 1 462 4 484 0.0 745
Msa0918080 MtrunA17_Chr6g0454181 71.726 481 118 1 1 463 4 484 0.0 733
Msa0918080 MtrunA17_Chr6g0454191 71.933 481 116 2 2 463 5 485 0.0 726
Msa0918080 MtrunA17_Chr6g0453951 70.921 478 121 1 3 462 53 530 0.0 720
Msa0918080 MtrunA17_Chr6g0453961 71.488 477 117 1 5 462 17 493 0.0 717
Msa0918080 MtrunA17_Chr7g0217881 73.696 460 121 0 3 462 6 465 0.0 707
Msa0918080 MtrunA17_Chr8g0359821 70.747 482 121 3 1 464 4 483 0.0 706
Msa0918080 MtrunA17_Chr6g0452771 72.500 480 114 1 1 462 4 483 0.0 706
Msa0918080 MtrunA17_Chr6g0454361 72.479 476 113 1 5 462 9 484 0.0 704
Msa0918080 MtrunA17_Chr6g0454261 70.833 480 122 1 3 464 6 485 0.0 703
Msa0918080 MtrunA17_Chr6g0454341 69.295 482 126 4 1 463 4 482 0.0 703
Msa0918080 MtrunA17_Chr6g0454201 73.166 477 110 1 5 463 9 485 0.0 702
Msa0918080 MtrunA17_Chr6g0454351 69.729 479 110 2 2 462 7 468 0.0 694
Msa0918080 MtrunA17_Chr6g0454141 68.607 481 133 1 1 463 4 484 0.0 694
Msa0918080 MtrunA17_Chr3g0078841 68.050 482 132 3 1 463 4 482 0.0 684
Msa0918080 MtrunA17_Chr6g0454301 68.958 480 127 3 1 461 257 733 0.0 684
Msa0918080 MtrunA17_Chr6g0454301 82.609 230 40 0 231 460 2 231 5.41e-132 398
Msa0918080 MtrunA17_Chr8g0336331 68.257 482 130 4 1 463 4 481 0.0 684
Msa0918080 MtrunA17_Chr5g0423981 71.397 458 114 3 5 462 8 448 0.0 680
Msa0918080 MtrunA17_Chr6g0454251 83.038 395 49 1 1 377 1 395 0.0 673
Msa0918080 MtrunA17_Chr6g0454131 70.378 476 122 2 5 462 8 482 0.0 664
Msa0918080 MtrunA17_Chr6g0454121 69.182 477 128 2 5 463 8 483 0.0 659
Msa0918080 MtrunA17_Chr6g0454151 68.828 478 129 2 3 462 6 481 0.0 659
Msa0918080 MtrunA17_Chr6g0454321 66.737 472 135 4 1 453 4 472 0.0 655
Msa0918080 MtrunA17_Chr6g0454321 78.049 123 27 0 1 123 498 620 3.91e-60 207
Msa0918080 MtrunA17_Chr3g0092641 54.737 475 189 6 6 460 11 479 0.0 526
Msa0918080 MtrunA17_Chr8g0355011 73.118 372 40 3 111 464 38 367 0.0 526
Msa0918080 MtrunA17_Chr5g0426431 54.526 475 190 6 7 461 12 480 0.0 525
Msa0918080 MtrunA17_Chr6g0454271 81.507 292 54 0 173 464 1 292 2.52e-180 505
Msa0918080 MtrunA17_Chr2g0278711 52.192 479 199 6 4 460 8 478 6.87e-174 496
Msa0918080 MtrunA17_Chr3g0118771 48.218 477 221 5 4 459 18 489 3.99e-162 467
Msa0918080 MtrunA17_Chr3g0118671 48.117 478 222 5 3 459 2 474 1.90e-161 465
Msa0918080 MtrunA17_Chr3g0118711 48.333 480 220 6 2 459 8 481 2.19e-161 465
Msa0918080 MtrunA17_Chr3g0118691 46.751 477 228 5 4 459 12 483 4.36e-159 459
Msa0918080 MtrunA17_Chr3g0118701 45.963 483 234 6 4 465 12 488 3.99e-157 454
Msa0918080 MtrunA17_Chr4g0050341 46.598 485 233 5 1 462 13 494 5.76e-154 446
Msa0918080 MtrunA17_Chr3g0118751 45.493 477 207 6 3 459 2 445 7.43e-146 424
Msa0918080 MtrunA17_Chr6g0454171 61.765 340 98 4 128 462 1 313 3.83e-145 417
Msa0918080 MtrunA17_Chr3g0118661 45.798 476 231 6 4 458 10 479 6.47e-140 410
Msa0918080 MtrunA17_Chr6g0454221 80.702 228 43 1 231 457 2 229 9.78e-133 385
Msa0918080 MtrunA17_Chr5g0426401 51.923 312 142 5 152 460 6 312 5.40e-112 333
Msa0918080 MtrunA17_Chr3g0118721 52.069 290 136 2 173 459 1 290 2.09e-104 313
Msa0918080 MtrunA17_Chr6g0453981 65.789 228 60 1 128 337 1 228 1.48e-102 305
Msa0918080 MtrunA17_Chr6g0453941 53.939 330 90 9 3 331 7 275 2.37e-102 306
Msa0918080 MtrunA17_Chr6g0454231 61.719 256 59 3 205 459 2 219 2.36e-101 311
Msa0918080 MtrunA17_Chr6g0454231 60.338 237 73 2 1 219 244 477 9.03e-90 281
Msa0918080 MtrunA17_Chr8g0336271 59.184 245 78 3 1 227 4 244 1.22e-96 292
Msa0918080 MtrunA17_Chr6g0454371 75.862 174 42 0 289 462 1 174 1.66e-95 285
Msa0918080 MtrunA17_Chr6g0454281 78.947 171 36 0 1 171 4 174 5.22e-94 283
Msa0918080 MtrunA17_Chr3g0112771 35.205 463 264 10 9 459 14 452 2.45e-92 287
Msa0918080 MtrunA17_Chr5g0412111 34.110 472 278 8 6 458 4 461 6.99e-90 281
Msa0918080 MtrunA17_Chr5g0412131 32.924 489 262 12 6 458 11 469 5.18e-85 269
Msa0918080 MtrunA17_Chr5g0412101 32.708 480 276 10 6 458 11 470 1.07e-83 265
Msa0918080 MtrunA17_Chr8g0336261 81.752 137 25 0 289 425 1 137 6.30e-81 246
Msa0918080 MtrunA17_Chr3g0112761 32.759 464 276 11 9 459 10 450 1.80e-79 254
Msa0918080 MtrunA17_Chr4g0032331 33.624 458 264 13 9 450 10 443 9.00e-76 244
Msa0918080 MtrunA17_Chr7g0218831 30.670 463 277 11 6 455 5 436 3.74e-73 237
Msa0918080 MtrunA17_Chr7g0218841 31.250 464 274 11 6 455 5 437 2.39e-72 235
Msa0918080 MtrunA17_Chr1g0207981 29.979 477 294 11 7 459 13 473 3.21e-70 231
Msa0918080 MtrunA17_Chr7g0218811 31.317 463 275 11 6 455 14 446 1.16e-69 228
Msa0918080 MtrunA17_Chr7g0218791 31.760 466 274 15 6 455 4 441 1.55e-68 225
Msa0918080 MtrunA17_Chr6g0454111 58.639 191 60 3 120 309 11 183 3.04e-68 216
Msa0918080 MtrunA17_Chr7g0218821 30.989 455 263 13 6 432 4 435 9.27e-68 223
Msa0918080 MtrunA17_Chr6g0464881 28.842 475 308 10 1 464 5 460 1.76e-63 212
Msa0918080 MtrunA17_Chr8g0380531 30.277 469 289 14 7 458 10 457 3.28e-61 206
Msa0918080 MtrunA17_Chr5g0414331 30.952 462 282 14 7 455 13 450 3.73e-61 206
Msa0918080 MtrunA17_Chr4g0053501 28.059 474 305 11 9 463 13 469 2.76e-60 205
Msa0918080 MtrunA17_Chr7g0243931 30.847 496 287 15 2 458 12 490 5.01e-60 204
Msa0918080 MtrunA17_Chr5g0426411 55.556 171 70 3 3 172 8 173 8.95e-60 193
Msa0918080 MtrunA17_Chr5g0431441 30.372 484 281 15 7 464 18 471 1.05e-59 202
Msa0918080 MtrunA17_Chr7g0249981 30.736 462 280 13 5 451 23 459 1.32e-59 203
Msa0918080 MtrunA17_Chr6g0464921 29.787 470 289 14 6 458 10 455 7.55e-59 200
Msa0918080 MtrunA17_Chr5g0414321 30.108 465 290 14 7 459 11 452 2.22e-58 199
Msa0918080 MtrunA17_Chr7g0250001 28.298 470 301 12 3 459 2 448 3.14e-58 198
Msa0918080 MtrunA17_Chr7g0243951 29.899 495 292 17 2 458 6 483 5.46e-58 199
Msa0918080 MtrunA17_Chr5g0401721 28.921 491 305 15 1 463 1 475 2.64e-57 196
Msa0918080 MtrunA17_Chr7g0265041 30.196 510 282 17 6 465 10 495 4.67e-57 196
Msa0918080 MtrunA17_Chr3g0098111 29.278 485 296 13 2 458 4 469 8.94e-57 195
Msa0918080 MtrunA17_Chr4g0053321 28.163 490 302 15 1 463 18 484 1.24e-56 195
Msa0918080 MtrunA17_Chr1g0161351 28.692 474 303 11 7 458 37 497 4.27e-56 194
Msa0918080 MtrunA17_Chr7g0243631 30.081 492 286 16 7 458 13 486 7.11e-56 193
Msa0918080 MtrunA17_Chr6g0464871 28.846 468 287 14 7 455 23 463 8.42e-56 192
Msa0918080 MtrunA17_Chr8g0365811 29.167 480 291 14 9 458 497 957 1.44e-55 199
Msa0918080 MtrunA17_Chr8g0365811 29.103 457 273 12 9 432 11 449 3.40e-52 189
Msa0918080 MtrunA17_Chr1g0207861 29.046 482 301 13 2 458 3 468 4.30e-55 191
Msa0918080 MtrunA17_Chr8g0377921 29.938 481 292 17 6 459 2 464 1.16e-54 189
Msa0918080 MtrunA17_Chr7g0275681 30.707 495 278 17 6 459 11 481 1.36e-54 189
Msa0918080 MtrunA17_Chr7g0243861 28.824 510 279 18 2 458 9 487 7.24e-54 188
Msa0918080 MtrunA17_Chr6g0464841 28.602 465 292 13 7 455 11 451 7.48e-54 187
Msa0918080 MtrunA17_Chr4g0011051 29.563 504 300 15 3 465 5 494 2.22e-53 186
Msa0918080 MtrunA17_Chr5g0393591 28.419 468 270 10 7 458 17 435 2.37e-53 185
Msa0918080 MtrunA17_Chr1g0207971 27.061 473 307 9 2 458 3 453 3.42e-53 185
Msa0918080 MtrunA17_Chr1g0207931 28.392 479 253 13 2 458 87 497 1.15e-52 185
Msa0918080 MtrunA17_Chr5g0431361 27.463 477 286 12 7 458 12 453 1.21e-52 183
Msa0918080 MtrunA17_Chr4g0060511 29.492 512 276 20 2 458 6 487 2.04e-52 184
Msa0918080 MtrunA17_Chr5g0431401 28.033 478 287 13 3 458 6 448 8.42e-52 181
Msa0918080 MtrunA17_Chr6g0464861 27.907 473 297 14 2 455 3 450 9.55e-52 181
Msa0918080 MtrunA17_Chr1g0207951 27.824 478 299 13 2 458 118 570 1.82e-51 187
Msa0918080 MtrunA17_Chr1g0207951 29.668 482 276 16 9 458 658 1108 1.06e-49 182
Msa0918080 MtrunA17_Chr7g0243801 28.994 507 280 18 1 458 1 476 2.36e-51 181
Msa0918080 MtrunA17_Chr3g0121991 29.039 489 288 16 7 458 79 545 2.67e-51 182
Msa0918080 MtrunA17_Chr7g0243771 28.657 499 280 18 7 458 6 475 3.49e-51 180
Msa0918080 MtrunA17_Chr1g0207831 28.067 481 288 12 9 458 10 463 6.13e-51 179
Msa0918080 MtrunA17_Chr5g0440421 28.343 501 305 21 2 459 5 494 7.51e-51 179
Msa0918080 MtrunA17_Chr7g0249931 27.273 473 292 15 1 451 34 476 1.09e-50 179
Msa0918080 MtrunA17_Chr8g0366391 29.860 499 273 19 7 458 9 477 1.23e-50 179
Msa0918080 MtrunA17_Chr1g0173121 27.426 474 293 15 9 458 16 462 2.24e-50 177
Msa0918080 MtrunA17_Chr5g0431421 28.184 479 287 13 3 459 6 449 2.65e-50 177
Msa0918080 MtrunA17_Chr7g0243681 28.008 507 282 16 2 458 6 479 3.42e-50 178
Msa0918080 MtrunA17_Chr8g0382021 28.903 474 286 15 12 458 39 488 8.00e-50 177
Msa0918080 MtrunA17_Chr6g0462571 30.172 348 201 7 133 454 126 457 1.72e-49 176
Msa0918080 MtrunA17_Chr3g0122001 28.747 487 292 12 7 458 486 952 1.94e-49 181
Msa0918080 MtrunA17_Chr3g0122001 28.921 491 287 14 7 458 6 473 1.32e-47 176
Msa0918080 MtrunA17_Chr7g0265141 30.661 499 279 15 7 459 9 486 2.23e-49 175
Msa0918080 MtrunA17_Chr7g0232401 27.160 486 284 13 4 449 3 458 3.05e-49 175
Msa0918080 MtrunA17_Chr7g0265101 29.102 512 293 19 2 465 4 493 4.68e-49 175
Msa0918080 MtrunA17_Chr7g0243781 27.163 497 287 15 7 458 9 475 8.46e-49 174
Msa0918080 MtrunA17_Chr6g0462521 31.686 344 202 8 137 464 128 454 8.85e-49 173
Msa0918080 MtrunA17_Chr4g0044511 27.607 489 293 17 7 458 40 504 1.15e-48 174
Msa0918080 MtrunA17_Chr6g0462541 29.609 358 211 7 122 454 118 459 1.65e-48 173
Msa0918080 MtrunA17_Chr6g0462531 27.033 492 292 14 9 463 6 467 3.28e-48 172
Msa0918080 MtrunA17_Chr7g0265051 28.070 513 295 17 2 465 4 491 3.46e-48 172
Msa0918080 MtrunA17_Chr7g0265151 27.054 499 309 15 1 459 1 484 4.09e-48 172
Msa0918080 MtrunA17_Chr5g0448551 27.438 441 282 10 1 426 1 418 4.61e-48 171
Msa0918080 MtrunA17_Chr5g0431371 27.848 474 285 14 7 458 10 448 5.52e-48 171
Msa0918080 MtrunA17_Chr5g0427561 77.528 89 20 0 375 463 1 89 1.50e-47 158
Msa0918080 MtrunA17_Chr1g0159551 27.079 469 292 14 12 458 19 459 1.61e-47 170
Msa0918080 MtrunA17_Chr7g0243871 28.373 504 275 17 4 458 6 472 1.67e-47 170
Msa0918080 MtrunA17_Chr6g0449931 28.717 491 276 19 3 451 2 460 4.91e-47 169
Msa0918080 MtrunA17_Chr8g0377941 28.398 493 288 16 1 459 1 462 6.46e-47 168
Msa0918080 MtrunA17_Chr4g0014061 28.226 496 285 16 2 455 3 469 7.98e-47 168
Msa0918080 MtrunA17_Chr7g0235051 28.947 494 266 18 2 457 6 452 8.42e-47 168
Msa0918080 MtrunA17_Chr7g0243851 29.918 488 260 17 2 458 6 442 1.79e-46 167
Msa0918080 MtrunA17_Chr7g0243761 27.426 474 292 14 7 458 11 454 3.56e-46 166
Msa0918080 MtrunA17_Chr5g0419771 28.119 505 284 17 7 459 36 513 4.88e-46 167
Msa0918080 MtrunA17_Chr1g0179901 27.734 512 278 19 7 459 16 494 1.06e-45 166
Msa0918080 MtrunA17_Chr3g0106231 27.615 478 278 18 7 459 18 452 1.56e-45 165
Msa0918080 MtrunA17_Chr5g0419761 25.403 496 323 12 4 463 6 490 1.76e-45 165
Msa0918080 MtrunA17_Chr7g0232311 29.065 492 277 16 3 455 2 460 2.25e-45 164
Msa0918080 MtrunA17_Chr8g0373301 30.311 386 218 12 80 434 77 442 4.33e-45 163
Msa0918080 MtrunA17_Chr8g0347271 27.044 477 281 14 6 447 18 462 2.37e-44 162
Msa0918080 MtrunA17_Chr8g0347281 27.140 479 278 14 6 447 17 461 2.52e-44 162
Msa0918080 MtrunA17_Chr2g0329111 28.306 484 282 18 4 445 3 463 2.66e-44 162
Msa0918080 MtrunA17_Chr6g0454381 54.225 142 47 1 128 251 1 142 4.35e-44 151
Msa0918080 MtrunA17_Chr5g0420801 27.122 483 296 17 1 455 1 455 2.91e-43 158
Msa0918080 MtrunA17_Chr7g0232391 24.949 493 300 13 4 457 3 464 3.05e-43 158
Msa0918080 MtrunA17_Chr4g0066201 28.163 490 289 15 3 458 14 474 3.35e-43 159
Msa0918080 MtrunA17_Chr6g0459311 28.893 488 268 19 3 447 9 460 8.81e-43 157
Msa0918080 MtrunA17_Chr6g0462551 27.311 476 295 13 9 454 6 460 1.51e-42 157
Msa0918080 MtrunA17_Chr4g0044501 27.634 503 276 20 7 458 10 475 1.92e-42 157
Msa0918080 MtrunA17_Chr5g0401851 26.600 500 297 16 5 458 8 483 2.13e-42 156
Msa0918080 MtrunA17_Chr1g0165701 27.655 499 282 16 8 458 16 483 2.76e-42 156
Msa0918080 MtrunA17_Chr6g0486251 27.615 478 275 16 9 447 8 453 3.77e-42 155
Msa0918080 MtrunA17_Chr6g0486201 27.615 478 275 16 9 447 8 453 3.77e-42 155
Msa0918080 MtrunA17_Chr5g0432731 32.692 312 174 10 164 459 6 297 5.88e-42 150
Msa0918080 MtrunA17_Chr4g0066151 27.105 487 289 14 10 458 21 479 8.75e-42 155
Msa0918080 MtrunA17_Chr8g0335141 33.448 290 163 9 176 447 180 457 9.30e-42 154
Msa0918080 MtrunA17_Chr7g0275511 26.994 489 282 18 1 447 9 464 1.03e-41 154
Msa0918080 MtrunA17_Chr4g0066281 26.860 484 287 15 10 458 15 466 1.30e-41 154
Msa0918080 MtrunA17_Chr8g0355221 25.918 490 305 15 8 458 16 486 1.54e-41 154
Msa0918080 MtrunA17_Chr4g0066221 26.531 490 306 14 10 463 14 485 1.80e-41 154
Msa0918080 MtrunA17_Chr7g0232411 25.956 497 290 19 4 457 3 464 3.75e-41 153
Msa0918080 MtrunA17_Chr8g0361371 26.747 501 287 17 1 455 1 467 4.37e-41 152
Msa0918080 MtrunA17_Chr4g0066131 26.294 483 292 14 10 455 16 471 4.72e-41 153
Msa0918080 MtrunA17_Chr5g0416741 25.667 487 307 12 9 458 15 483 4.89e-41 153
Msa0918080 MtrunA17_Chr4g0072761 26.452 465 302 10 7 458 15 452 5.44e-41 152
Msa0918080 MtrunA17_Chr8g0335161 33.448 290 163 8 176 447 178 455 7.36e-41 152
Msa0918080 MtrunA17_Chr8g0369341 26.598 485 308 13 1 456 1 466 8.21e-41 152
Msa0918080 MtrunA17_Chr5g0428081 26.556 482 305 13 10 458 14 479 8.27e-41 152
Msa0918080 MtrunA17_Chr8g0336741 26.539 471 273 13 7 437 13 450 9.15e-41 152
Msa0918080 MtrunA17_Chr5g0442541 26.316 494 297 12 4 459 2 466 3.77e-40 150
Msa0918080 MtrunA17_Chr6g0463891 26.815 496 294 19 8 458 13 484 7.91e-40 149
Msa0918080 MtrunA17_Chr5g0429711 27.686 484 299 15 1 458 3 461 1.45e-39 148
Msa0918080 MtrunA17_Chr5g0442561 25.447 503 306 15 4 465 2 476 2.28e-39 148
Msa0918080 MtrunA17_Chr5g0442521 24.851 503 312 13 4 465 2 479 3.74e-39 147
Msa0918080 MtrunA17_Chr8g0370941 27.432 514 293 22 4 463 5 492 4.16e-39 148
Msa0918080 MtrunA17_Chr1g0153451 26.535 505 281 18 3 461 2 462 4.27e-39 147
Msa0918080 MtrunA17_Chr8g0339461 29.577 355 204 8 118 438 109 451 4.50e-39 147
Msa0918080 MtrunA17_Chr4g0072771 25.470 479 298 11 4 458 22 465 4.74e-39 147
Msa0918080 MtrunA17_Chr2g0294931 25.667 487 305 14 10 458 14 481 5.17e-39 147
Msa0918080 MtrunA17_Chr8g0336731 27.793 367 223 8 118 455 134 487 1.02e-38 146
Msa0918080 MtrunA17_Chr5g0442491 26.190 504 303 16 4 465 2 478 2.17e-38 145
Msa0918080 MtrunA17_Chr7g0232331 25.996 477 277 17 4 438 3 445 2.62e-38 145
Msa0918080 MtrunA17_Chr4g0044521 27.984 486 278 19 10 456 12 464 2.88e-38 145
Msa0918080 MtrunA17_Chr5g0416821 26.915 483 295 16 9 458 16 473 3.59e-38 145
Msa0918080 MtrunA17_Chr7g0249961 32.794 247 156 5 210 451 11 252 5.35e-38 139
Msa0918080 MtrunA17_Chr5g0442581 24.748 497 320 12 4 463 2 481 7.13e-38 145
Msa0918080 MtrunA17_Chr8g0374931 26.446 484 305 14 10 458 14 481 8.48e-38 144
Msa0918080 MtrunA17_Chr8g0336691 26.104 498 285 17 3 454 9 469 1.23e-37 147
Msa0918080 MtrunA17_Chr8g0336691 32.824 262 143 6 208 447 1118 1368 1.06e-36 144
Msa0918080 MtrunA17_Chr8g0336691 31.136 273 157 6 196 454 653 908 5.73e-33 133
Msa0918080 MtrunA17_Chr8g0336651 36.667 210 113 4 265 454 1030 1239 1.38e-37 146
Msa0918080 MtrunA17_Chr8g0336651 28.896 308 182 7 166 454 171 460 3.96e-37 145
Msa0918080 MtrunA17_Chr8g0336651 35.385 195 102 3 265 454 595 770 1.58e-33 134
Msa0918080 MtrunA17_Chr8g0339451 31.161 353 201 11 118 438 101 443 1.68e-37 142
Msa0918080 MtrunA17_Chr4g0066261 26.667 495 290 18 10 458 14 481 1.75e-37 143
Msa0918080 MtrunA17_Chr8g0339601 39.378 193 97 4 266 438 118 310 1.96e-37 139
Msa0918080 MtrunA17_Chr2g0294921 26.653 484 304 14 10 458 163 630 2.51e-37 144
Msa0918080 MtrunA17_Chr8g0339631 26.107 429 253 13 65 451 55 461 2.75e-37 142
Msa0918080 MtrunA17_Chr5g0448521 25.251 499 298 13 4 459 2 468 4.40e-37 141
Msa0918080 MtrunA17_Chr5g0442601 26.931 505 300 16 4 465 401 879 1.36e-36 143
Msa0918080 MtrunA17_Chr5g0442601 26.911 327 200 6 85 399 34 333 1.44e-29 122
Msa0918080 MtrunA17_Chr8g0336321 26.316 456 295 13 1 432 1 439 1.38e-36 140
Msa0918080 MtrunA17_Chr7g0232341 24.893 466 296 14 4 438 3 445 2.40e-36 139
Msa0918080 MtrunA17_Chr3g0106251 29.758 289 177 6 181 459 22 294 3.86e-36 135
Msa0918080 MtrunA17_Chr8g0339441 37.824 193 100 3 266 438 217 409 4.12e-36 138
Msa0918080 MtrunA17_Chr4g0042891 27.088 491 297 15 1 457 1 464 5.15e-36 139
Msa0918080 MtrunA17_Chr4g0066171 26.899 487 298 14 3 458 17 476 5.17e-36 139
Msa0918080 MtrunA17_Chr4g0042931 28.163 490 291 17 1 457 1 462 8.70e-36 138
Msa0918080 MtrunA17_Chr7g0218311 25.667 487 302 14 10 458 19 483 8.92e-36 138
Msa0918080 MtrunA17_Chr6g0463851 23.878 490 311 15 10 458 14 482 1.39e-35 137
Msa0918080 MtrunA17_Chr8g0334851 29.452 292 171 8 168 437 170 448 1.49e-35 137
Msa0918080 MtrunA17_Chr4g0044481 28.434 415 235 14 7 401 27 399 1.65e-35 136
Msa0918080 MtrunA17_Chr8g0336251 26.316 456 295 13 1 432 1 439 2.11e-35 137
Msa0918080 MtrunA17_Chr5g0410941 26.151 478 310 12 10 458 26 489 3.14e-35 137
Msa0918080 MtrunA17_Chr8g0334831 26.735 490 263 19 3 434 2 453 1.18e-34 135
Msa0918080 MtrunA17_Chr6g0463861 25.413 484 302 15 10 458 14 473 1.32e-34 135
Msa0918080 MtrunA17_Chr3g0079731 31.597 288 149 8 203 456 205 478 1.71e-34 134
Msa0918080 MtrunA17_Chr7g0243611 30.035 283 181 7 130 405 5 277 2.00e-34 130
Msa0918080 MtrunA17_Chr5g0429681 29.545 484 283 21 3 455 40 496 2.30e-34 134
Msa0918080 MtrunA17_Chr7g0265111 26.962 497 300 17 7 459 39 516 3.40e-34 134
Msa0918080 MtrunA17_Chr2g0307961 25.407 492 305 14 2 460 8 470 2.01e-33 131
Msa0918080 MtrunA17_Chr7g0243711 33.333 249 140 7 231 458 73 316 2.34e-33 128
Msa0918080 MtrunA17_Chr1g0153461 34.783 207 118 4 265 454 2 208 3.67e-33 125
Msa0918080 MtrunA17_Chr7g0241801 26.757 441 274 14 4 435 6 406 5.62e-33 129
Msa0918080 MtrunA17_Chr5g0442511 24.440 491 304 17 4 464 46 499 7.10e-33 130
Msa0918080 MtrunA17_Chr8g0374941 26.305 498 286 22 10 458 952 1417 1.25e-32 132
Msa0918080 MtrunA17_Chr8g0374941 25.367 477 279 20 10 439 14 460 8.50e-31 126
Msa0918080 MtrunA17_Chr8g0374941 25.106 470 289 18 10 439 479 925 1.67e-29 122
Msa0918080 MtrunA17_Chr7g0241781 26.517 445 270 12 4 435 6 406 1.39e-32 128
Msa0918080 MtrunA17_Chr5g0403641 32.394 213 122 3 267 457 289 501 3.49e-32 128
Msa0918080 MtrunA17_Chr8g0374901 24.180 488 307 17 10 458 15 478 7.89e-32 127
Msa0918080 MtrunA17_Chr7g0243911 35.176 199 109 4 262 440 17 215 1.07e-31 121
Msa0918080 MtrunA17_Chr2g0294941 27.794 349 217 11 121 439 17 360 1.85e-31 124
Msa0918080 MtrunA17_Chr5g0431431 26.540 422 228 13 7 424 10 353 2.29e-31 124
Msa0918080 MtrunA17_Chr8g0334861 23.387 496 304 18 3 457 2 462 4.35e-31 125
Msa0918080 MtrunA17_Chr2g0302991 26.923 364 231 8 119 458 110 462 4.72e-31 124
Msa0918080 MtrunA17_Chr8g0374971 24.330 485 312 16 10 458 15 480 5.39e-31 125
Msa0918080 MtrunA17_Chr6g0482061 26.240 484 308 15 7 457 11 478 7.83e-31 124
Msa0918080 MtrunA17_Chr7g0243811 26.396 394 234 12 19 387 1 363 8.93e-31 122
Msa0918080 MtrunA17_Chr6g0454391 60.674 89 34 1 351 439 11 98 1.00e-30 115
Msa0918080 MtrunA17_Chr8g0350881 32.258 217 124 4 265 458 264 480 2.14e-30 123
Msa0918080 MtrunA17_Chr2g0302961 24.898 490 305 12 5 458 3 465 2.38e-30 122
Msa0918080 MtrunA17_Chr8g0361411 26.667 480 290 19 7 458 8 453 3.33e-30 122
Msa0918080 MtrunA17_Chr5g0409591 29.555 247 144 7 210 428 212 456 3.91e-27 113
Msa0918080 MtrunA17_Chr8g0367221 24.946 465 304 13 3 442 794 1238 4.05e-26 112
Msa0918080 MtrunA17_Chr8g0367221 25.435 460 292 15 3 434 1284 1720 9.10e-26 111
Msa0918080 MtrunA17_Chr8g0367221 24.891 458 296 15 3 434 8 443 5.30e-25 108
Msa0918080 MtrunA17_Chr2g0278721 25.745 470 286 17 3 436 513 955 4.25e-26 112
Msa0918080 MtrunA17_Chr2g0278721 29.213 178 117 4 264 435 269 443 3.53e-17 84.7
Msa0918080 MtrunA17_Chr6g0466841 25.508 443 279 15 4 423 15 429 6.50e-26 110
Msa0918080 MtrunA17_Chr5g0427571 30.233 258 166 6 191 441 25 275 1.48e-25 106
Msa0918080 MtrunA17_Chr3g0079711 33.514 185 101 5 293 456 3 186 1.50e-25 103
Msa0918080 MtrunA17_Chr6g0464091 24.324 481 294 19 1 440 11 462 2.18e-25 108
Msa0918080 MtrunA17_Chr7g0250021 27.829 327 200 10 1 313 6 310 3.08e-25 105
Msa0918080 MtrunA17_Chr6g0466831 24.835 455 291 14 4 435 15 441 3.39e-25 107
Msa0918080 MtrunA17_Chr1g0207881 37.209 129 75 1 336 458 256 384 1.49e-24 105
Msa0918080 MtrunA17_Chr4g0069611 24.619 459 281 17 7 435 15 438 4.34e-24 104
Msa0918080 MtrunA17_Chr7g0231631 30.469 256 162 7 212 458 11 259 5.04e-24 101
Msa0918080 MtrunA17_Chr7g0232351 25.542 415 228 17 4 376 3 378 1.45e-22 99.0
Msa0918080 MtrunA17_Chr1g0196851 24.786 468 283 18 2 435 44 476 1.99e-22 99.8
Msa0918080 MtrunA17_Chr3g0092031 31.214 173 110 4 269 435 6 175 1.10e-21 92.8
Msa0918080 MtrunA17_Chr2g0278741 23.517 472 285 18 2 435 92 525 1.19e-21 97.8
Msa0918080 MtrunA17_Chr3g0118741 62.069 58 22 0 3 60 2 59 1.59e-21 88.2
Msa0918080 MtrunA17_Chr8g0337381 37.705 122 70 2 337 454 2 121 4.00e-21 89.0
Msa0918080 MtrunA17_Chr2g0302851 23.581 458 297 16 2 435 11 439 6.11e-21 95.1
Msa0918080 MtrunA17_Chr8g0357361 35.461 141 82 3 265 401 116 251 1.28e-18 85.5
Msa0918080 MtrunA17_Chr3g0118731 37.607 117 68 2 59 175 28 139 7.97e-18 80.9
Msa0918080 MtrunA17_Chr4g0040691 25.448 279 189 7 193 463 195 462 8.93e-18 85.5
Msa0918080 MtrunA17_Chr6g0454241 73.913 46 12 0 418 463 1 46 3.27e-17 76.3
Msa0918080 MtrunA17_Chr4g0066141 33.824 136 76 2 337 458 216 351 3.98e-17 82.8
Msa0918080 MtrunA17_Chr4g0029131 21.522 460 295 16 7 435 12 436 1.26e-16 82.8
Msa0918080 MtrunA17_Chr4g0039881 26.724 232 155 7 211 435 192 415 1.69e-16 81.6
Msa0918080 MtrunA17_Chr2g0283041 25.112 223 140 6 210 421 211 417 7.71e-15 76.6
Msa0918080 MtrunA17_Chr4g0040711 25.822 213 144 5 193 402 195 396 1.53e-14 75.5
Msa0918080 MtrunA17_Chr4g0029151 21.444 457 299 15 7 435 20 444 3.23e-14 74.7
Msa0918080 MtrunA17_Chr7g0267931 72.973 37 9 1 12 47 25 61 8.82e-14 66.2
Msa0918080 MtrunA17_Chr7g0243731 40.000 70 41 1 333 401 4 73 2.50e-13 65.5
Msa0918080 MtrunA17_Chr6g0454311 77.778 36 8 0 170 205 21 56 7.73e-12 60.5
Msa0918080 MtrunA17_Chr2g0319761 23.077 468 303 19 7 446 8 446 8.23e-12 67.0
Msa0918080 MtrunA17_Chr7g0243721 30.597 134 87 3 181 312 6 135 2.76e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0918080 AT1G22340.1 51.875 480 204 6 4 461 10 484 6.51e-180 512
Msa0918080 AT1G22400.1 50.728 481 210 5 4 462 10 485 3.32e-178 508
Msa0918080 AT1G22380.1 50.415 482 213 5 2 462 8 484 6.43e-177 505
Msa0918080 AT1G22360.1 51.042 480 209 5 4 462 7 481 1.14e-175 501
Msa0918080 AT1G78270.1 50.104 479 213 6 2 459 8 481 8.64e-171 489
Msa0918080 AT1G22370.2 51.782 477 209 5 2 462 8 479 2.06e-170 488
Msa0918080 AT1G22360.2 49.167 480 206 6 4 462 7 469 8.66e-166 476
Msa0918080 AT1G22370.1 49.835 303 149 2 163 462 7 309 1.06e-99 301
Msa0918080 AT5G59590.1 35.470 468 258 13 4 455 7 446 4.07e-88 276
Msa0918080 AT5G59580.1 35.332 467 257 12 5 455 7 444 4.21e-86 271
Msa0918080 AT3G46670.1 36.152 473 253 14 3 455 2 445 4.77e-86 271
Msa0918080 AT5G38010.1 35.865 474 256 11 3 456 6 451 3.36e-85 269
Msa0918080 AT3G11340.1 33.262 469 273 10 3 459 5 445 8.47e-84 265
Msa0918080 AT3G46660.1 34.341 463 262 12 9 455 16 452 5.20e-83 263
Msa0918080 AT5G05860.1 33.262 466 274 9 7 460 9 449 2.51e-82 261
Msa0918080 AT5G05880.1 32.258 465 278 11 7 458 8 448 6.10e-79 253
Msa0918080 AT5G05890.1 32.684 462 278 9 7 455 8 449 6.73e-79 253
Msa0918080 AT5G05900.1 31.263 467 283 10 7 460 8 449 7.69e-78 250
Msa0918080 AT3G46650.1 32.675 456 268 11 3 453 6 427 4.56e-77 247
Msa0918080 AT3G46680.1 33.404 473 264 13 3 455 5 446 1.25e-76 247
Msa0918080 AT3G55700.1 34.115 469 264 14 9 459 10 451 4.33e-76 246
Msa0918080 AT5G38040.1 32.675 456 265 10 16 456 19 447 1.16e-75 244
Msa0918080 AT3G46690.1 33.333 468 271 11 4 456 6 447 2.35e-75 243
Msa0918080 AT3G46700.1 32.340 470 272 11 4 458 6 444 1.89e-74 241
Msa0918080 AT5G05870.1 31.983 469 280 10 7 458 8 454 2.67e-72 236
Msa0918080 AT3G46720.1 32.833 466 265 12 4 455 6 437 2.63e-71 233
Msa0918080 AT3G21560.1 30.928 485 280 13 6 458 11 472 7.25e-71 233
Msa0918080 AT2G36970.1 30.498 482 290 13 4 458 7 470 9.26e-71 233
Msa0918080 AT3G55710.1 31.809 481 273 16 4 459 5 455 2.00e-68 226
Msa0918080 AT2G28080.1 31.423 471 285 12 11 461 22 474 8.83e-66 219
Msa0918080 AT4G15500.1 29.132 484 295 11 1 459 3 463 1.68e-65 218
Msa0918080 AT4G15490.1 28.631 482 299 12 7 462 8 470 1.55e-64 216
Msa0918080 AT3G02100.1 29.598 473 284 13 5 455 11 456 1.94e-64 215
Msa0918080 AT2G31750.1 30.417 480 279 14 5 459 6 455 7.33e-63 211
Msa0918080 AT2G31750.2 30.417 480 279 14 5 459 6 455 1.98e-62 211
Msa0918080 AT2G43820.1 30.342 468 294 14 1 458 1 446 3.37e-62 209
Msa0918080 AT2G43840.2 29.412 476 294 13 1 461 1 449 3.07e-61 206
Msa0918080 AT4G15480.1 28.302 477 300 11 7 458 19 478 1.24e-60 206
Msa0918080 AT2G43840.1 29.202 476 295 13 1 461 1 449 5.14e-60 203
Msa0918080 AT2G26480.1 27.824 478 291 12 4 461 5 448 6.03e-59 201
Msa0918080 AT1G05680.1 29.654 462 278 12 7 447 6 441 7.87e-57 195
Msa0918080 AT2G31790.1 29.087 471 293 11 4 455 5 453 1.38e-56 194
Msa0918080 AT2G36770.1 29.757 494 288 16 7 459 14 489 1.43e-55 192
Msa0918080 AT2G15480.1 30.943 488 284 15 7 458 10 480 2.33e-55 192
Msa0918080 AT1G05675.1 27.872 470 292 11 7 455 6 449 3.49e-54 188
Msa0918080 AT3G53160.1 29.697 495 298 16 7 464 8 489 5.41e-54 188
Msa0918080 AT1G05560.1 27.215 474 298 15 6 458 4 451 1.24e-53 187
Msa0918080 AT2G30140.2 28.330 473 283 15 7 458 13 450 1.39e-53 186
Msa0918080 AT2G30140.1 28.270 474 283 15 7 458 13 451 1.61e-53 186
Msa0918080 AT4G34131.1 28.138 494 293 14 4 457 7 478 2.34e-53 186
Msa0918080 AT2G15480.2 30.522 498 283 16 7 458 10 490 2.40e-53 187
Msa0918080 AT1G05560.2 27.215 474 298 15 6 458 54 501 2.92e-53 187
Msa0918080 AT4G01070.1 29.691 485 281 14 4 454 5 463 8.81e-53 185
Msa0918080 AT2G30150.2 27.579 475 286 14 7 458 13 452 9.08e-52 181
Msa0918080 AT2G15490.3 30.505 495 289 16 1 458 1 477 3.16e-51 181
Msa0918080 AT2G15490.1 30.120 498 290 15 1 458 1 480 3.56e-51 181
Msa0918080 AT2G30150.1 27.389 471 284 14 11 458 1 436 2.44e-50 177
Msa0918080 AT5G26310.1 26.640 503 286 15 1 457 1 466 2.99e-50 178
Msa0918080 AT2G36800.1 30.237 506 271 20 7 459 12 488 3.29e-50 178
Msa0918080 AT2G36780.1 28.743 501 284 18 7 459 14 489 9.46e-50 177
Msa0918080 AT5G37950.1 33.156 377 196 12 22 376 1 343 1.14e-49 173
Msa0918080 AT1G01420.1 29.878 492 277 16 1 454 1 462 1.32e-49 176
Msa0918080 AT1G01420.2 29.878 492 277 16 1 454 4 465 1.37e-49 176
Msa0918080 AT5G37950.2 33.512 373 194 13 22 376 1 337 1.95e-49 172
Msa0918080 AT2G36790.1 31.463 499 273 19 7 459 13 488 2.01e-49 176
Msa0918080 AT5G66690.1 27.000 500 288 15 1 457 1 466 3.10e-49 175
Msa0918080 AT5G14860.1 30.060 499 271 16 7 458 8 475 5.47e-49 175
Msa0918080 AT2G36750.1 29.675 492 290 17 7 459 10 484 8.52e-49 174
Msa0918080 AT2G23260.1 27.557 479 291 13 4 458 7 453 2.09e-48 172
Msa0918080 AT2G36760.1 27.439 492 302 15 7 459 14 489 2.21e-48 173
Msa0918080 AT2G16890.2 29.091 495 272 18 7 458 9 467 2.48e-48 173
Msa0918080 AT1G10400.1 30.426 493 275 19 1 457 1 461 4.22e-48 172
Msa0918080 AT2G23250.1 28.480 467 284 15 10 458 1 435 7.57e-48 171
Msa0918080 AT3G53150.1 27.734 512 294 12 4 459 19 510 8.93e-48 172
Msa0918080 AT4G34138.1 28.543 494 289 16 5 458 9 478 1.23e-47 171
Msa0918080 AT4G15550.1 25.918 490 296 12 6 457 12 472 3.68e-47 169
Msa0918080 AT4G14090.1 28.041 485 282 16 2 457 8 454 5.63e-47 169
Msa0918080 AT3G50740.1 28.119 505 282 18 1 457 1 472 1.29e-46 168
Msa0918080 AT4G34135.1 27.621 496 294 16 4 457 8 480 3.16e-46 167
Msa0918080 AT1G05530.1 26.667 480 300 15 5 459 3 455 3.78e-45 164
Msa0918080 AT3G22250.1 27.542 472 270 14 4 438 5 441 6.36e-45 163
Msa0918080 AT5G17050.1 26.722 479 298 10 4 459 9 457 9.59e-45 162
Msa0918080 AT5G03490.1 28.452 478 286 19 4 457 16 461 6.73e-44 160
Msa0918080 AT5G17040.1 26.932 427 287 8 47 459 25 440 7.11e-44 160
Msa0918080 AT1G24100.1 27.673 477 295 18 5 458 9 458 1.20e-43 160
Msa0918080 AT1G30530.1 26.338 467 300 10 8 459 14 451 1.01e-42 157
Msa0918080 AT4G36770.1 28.913 460 281 12 7 439 4 444 4.82e-42 155
Msa0918080 AT1G01390.1 29.065 492 281 16 6 461 7 466 1.18e-41 155
Msa0918080 AT1G01390.2 29.065 492 281 16 6 461 24 483 1.31e-41 155
Msa0918080 AT5G17040.2 29.553 291 193 4 170 459 59 338 2.59e-40 148
Msa0918080 AT3G16520.2 29.283 321 195 8 119 418 113 422 8.11e-40 149
Msa0918080 AT3G16520.1 29.283 321 195 8 119 418 113 422 1.31e-39 149
Msa0918080 AT3G16520.3 29.283 321 195 8 119 418 113 422 1.63e-39 148
Msa0918080 AT2G16890.3 28.097 452 247 17 7 416 9 424 1.97e-39 147
Msa0918080 AT5G17030.1 24.153 472 318 9 4 459 9 456 2.58e-39 148
Msa0918080 AT2G29710.1 25.820 488 294 17 9 459 7 463 8.16e-39 147
Msa0918080 AT1G51210.1 28.478 460 253 20 5 433 18 432 1.54e-38 145
Msa0918080 AT1G73880.1 28.216 482 293 20 5 459 12 467 2.17e-37 143
Msa0918080 AT4G15280.1 26.157 497 293 14 9 459 6 474 9.61e-37 141
Msa0918080 AT3G21790.1 27.621 496 290 14 9 458 6 478 1.35e-36 141
Msa0918080 AT5G12890.1 28.039 510 294 25 1 462 1 485 1.61e-36 140
Msa0918080 AT4G15280.2 26.157 497 293 14 9 459 38 506 1.77e-36 141
Msa0918080 AT3G21760.1 25.349 501 297 13 9 458 6 480 2.59e-36 140
Msa0918080 AT2G29730.1 25.311 482 304 17 9 459 7 463 5.60e-36 139
Msa0918080 AT3G21800.1 25.813 492 300 12 9 458 7 475 7.48e-36 139
Msa0918080 AT3G21750.1 23.589 496 310 10 5 459 2 469 2.08e-35 137
Msa0918080 AT1G07260.1 27.869 366 226 10 119 459 120 472 5.08e-35 136
Msa0918080 AT2G18560.1 37.981 208 100 7 267 451 168 369 1.25e-34 133
Msa0918080 AT3G21780.1 26.008 496 296 16 5 458 2 468 4.62e-34 134
Msa0918080 AT2G29740.1 31.716 268 163 6 199 455 213 471 8.05e-34 133
Msa0918080 AT1G07250.1 30.605 281 174 5 191 459 202 473 4.64e-33 130
Msa0918080 AT4G15260.1 26.087 368 219 8 129 459 4 355 3.81e-32 126
Msa0918080 AT5G65550.1 25.577 477 289 18 1 442 1 446 5.45e-32 127
Msa0918080 AT2G18570.1 24.532 481 305 13 5 451 3 459 1.21e-31 127
Msa0918080 AT2G29750.1 28.676 272 173 5 199 459 213 474 5.85e-31 125
Msa0918080 AT5G49690.1 24.512 461 291 16 1 434 1 431 2.06e-30 123
Msa0918080 AT1G07240.1 28.417 278 174 6 198 459 208 476 2.62e-30 123
Msa0918080 AT1G06000.1 25.367 477 284 14 4 458 7 433 2.87e-26 110
Msa0918080 AT2G22590.1 27.004 474 262 18 5 434 13 446 1.63e-24 106
Msa0918080 AT4G34135.2 27.566 341 194 13 4 313 8 326 4.95e-24 102
Msa0918080 AT4G01070.2 26.667 345 210 11 4 331 5 323 5.08e-20 91.7
Msa0918080 AT1G64910.1 24.762 420 256 16 7 409 6 382 6.18e-19 89.4
Msa0918080 AT4G27570.1 29.801 151 96 4 263 409 244 388 3.56e-15 77.8
Msa0918080 AT4G27560.1 29.139 151 97 4 263 409 244 388 6.85e-15 77.0
Msa0918080 AT5G53990.1 30.345 145 91 4 269 409 244 382 9.77e-15 76.6
Msa0918080 AT4G09500.2 31.387 137 88 3 269 401 244 378 3.24e-14 75.1
Msa0918080 AT4G09500.1 31.387 137 88 3 269 401 219 353 3.38e-14 74.7
Msa0918080 AT3G29630.2 29.412 170 110 4 268 433 219 382 5.66e-14 73.9
Msa0918080 AT3G29630.1 29.412 170 110 4 268 433 245 408 5.93e-14 74.3
Msa0918080 AT1G50580.1 24.374 439 239 17 5 409 4 383 6.78e-13 70.9
Msa0918080 AT5G54010.1 28.846 156 101 4 269 420 250 399 6.82e-13 70.9
Msa0918080 AT2G22930.1 29.771 131 86 3 275 401 250 378 2.79e-12 68.9
Msa0918080 AT5G54060.1 22.921 445 295 14 9 430 15 434 9.33e-12 67.4

Find 105 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCCAATAGCACAAATATT+AGG 0.156458 6_2:-44554111 None:intergenic
TATAAAGCCAATGGTTTAAT+AGG 0.180117 6_2:-44553157 None:intergenic
TCCGTTGTTTATGTGAATTT+TGG 0.232110 6_2:+44554246 Msa0918080:CDS
CAAGTTTAAGTACCAATCTT+TGG 0.243505 6_2:+44554175 Msa0918080:CDS
AGGATTTGCCTGACTTTATA+AGG 0.257518 6_2:+44553953 Msa0918080:CDS
TTCCCTAATATTTGTGCTAT+TGG 0.262532 6_2:+44554108 Msa0918080:CDS
GCAAAACTTCTTCACCTTAG+AGG 0.292624 6_2:+44553287 Msa0918080:CDS
TGACTTAAAAGTGAAGATAA+AGG 0.310770 6_2:-44554132 None:intergenic
CAAATATATCTGCAGTTTGC+TGG 0.319653 6_2:-44554570 None:intergenic
GGTATCTTCTTTCCAAAGAT+TGG 0.338705 6_2:-44554187 None:intergenic
ATATGGCCTTGAACTGGATA+TGG 0.341554 6_2:-44553245 None:intergenic
TTTCGTACATTGTTAGATAA+AGG 0.348312 6_2:+44553686 Msa0918080:CDS
AAAGGTCTCATACCACTAAA+AGG 0.351638 6_2:+44553704 Msa0918080:CDS
GAGAGAGGAGGTGGAGAAGT+TGG 0.353338 6_2:+44554635 Msa0918080:CDS
TCAGAAACTATACAAGTAAC+TGG 0.360551 6_2:-44553563 None:intergenic
ATAAAGCCAATGGTTTAATA+GGG 0.374548 6_2:-44553156 None:intergenic
GGGATGCAGTCAATGTTTCT+TGG 0.379962 6_2:-44553134 None:intergenic
GGTTTAATACTTGCTCTTGC+GGG 0.383344 6_2:-44554443 None:intergenic
TTAAAACCATCAAGAGCATT+AGG 0.384956 6_2:-44553371 None:intergenic
GGCCAATAGCACAAATATTA+GGG 0.385967 6_2:-44554110 None:intergenic
AGGTTATGTGAAAGCCTCTA+AGG 0.387539 6_2:-44553301 None:intergenic
GTTTCAGCAATGGATTGATA+TGG 0.389870 6_2:-44553262 None:intergenic
CAAGCGTTTGTGATTGTATT+CGG 0.389925 6_2:-44553333 None:intergenic
GACTTAAAAGTGAAGATAAA+GGG 0.399902 6_2:-44554131 None:intergenic
AATTCTATGATCGAATCATT+TGG 0.406752 6_2:-44553985 None:intergenic
ATTTGCAACGAATGGGAGAT+TGG 0.412569 6_2:+44554588 Msa0918080:CDS
AAAACTGTTAGAGTTTGCTT+GGG 0.416112 6_2:+44554293 Msa0918080:CDS
AAGATACCAAGTGTCTTGAT+TGG 0.419804 6_2:+44554202 Msa0918080:CDS
TTCACATAAACAACGGACTT+TGG 0.419953 6_2:-44554240 None:intergenic
GCATCAATTATTGTGTAACT+TGG 0.428925 6_2:+44553027 Msa0918080:five_prime_UTR
GTATTAAACCATCCTTCAAT+TGG 0.428943 6_2:+44554456 Msa0918080:CDS
AAGAATGAAATTTCAGATAG+AGG 0.430926 6_2:+44554402 Msa0918080:CDS
ATTAGGCCTGATCTTGTCAT+TGG 0.431441 6_2:+44554351 Msa0918080:CDS
AGGCCTGATCTTGTCATTGG+TGG 0.438351 6_2:+44554354 Msa0918080:CDS
TTAATTCCATATCCAGTTCA+AGG 0.449656 6_2:+44553239 Msa0918080:CDS
AGAGGTCCTAATGCTCTTGA+TGG 0.455553 6_2:+44553365 Msa0918080:CDS
TCTGTTGGAGTTAAACCATC+TGG 0.456927 6_2:-44553416 None:intergenic
CTTCATGACCATGCAACATC+TGG 0.458861 6_2:+44553530 Msa0918080:CDS
CAGATATATTTGCAACGAAT+GGG 0.470135 6_2:+44554581 Msa0918080:CDS
TCTTGATTGGCTTGAATCAA+AGG 0.471398 6_2:+44554215 Msa0918080:CDS
GTTGGTTAATGAATTGATGT+TGG 0.474061 6_2:+44554653 Msa0918080:CDS
GGATTGATATGGCCTTGAAC+TGG 0.479128 6_2:-44553251 None:intergenic
GTCAAGAATCCACCAATTGA+AGG 0.479366 6_2:-44554468 None:intergenic
GCAGATATATTTGCAACGAA+TGG 0.479481 6_2:+44554580 Msa0918080:CDS
TTGGTTAATGAATTGATGTT+GGG 0.480202 6_2:+44554654 Msa0918080:CDS
GAACCACCAATGACAAGATC+AGG 0.483234 6_2:-44554357 None:intergenic
GAATTGATGTTGGGAGAGAA+AGG 0.484401 6_2:+44554663 Msa0918080:CDS
GCGGGCACCAGTCCGTGATT+AGG 0.485687 6_2:-44554425 None:intergenic
TTCAGCAGCTTGTACTGTAA+AGG 0.489491 6_2:-44553597 None:intergenic
CAATGTGAAGAGAGAGGAGG+TGG 0.490400 6_2:+44554626 Msa0918080:CDS
ATTGTATTCGGTGTTTACAT+AGG 0.492050 6_2:-44553321 None:intergenic
TCGGTAATCCTTATAAAGTC+AGG 0.492790 6_2:-44553961 None:intergenic
GATAATTGAGATGAGGAAGA+AGG 0.500442 6_2:+44554704 Msa0918080:CDS
TTAAACCATCCTTCAATTGG+TGG 0.504523 6_2:+44554459 Msa0918080:CDS
AAACTTGCCAAGTGATTATG+TGG 0.509939 6_2:-44554159 None:intergenic
CAAGAAGTTCGCGAAAGGGT+TGG 0.509961 6_2:-44553502 None:intergenic
TATCACTGAAGCAGCAGAAA+GGG 0.521081 6_2:+44554008 Msa0918080:CDS
ATTGCAGAACTTTCGACTGA+AGG 0.525666 6_2:+44553933 Msa0918080:CDS
TGGTTTAATACTTGCTCTTG+CGG 0.535132 6_2:-44554444 None:intergenic
CACCTCCTCTCTCTTCACAT+TGG 0.536471 6_2:-44554625 None:intergenic
TACTTCTAATGAACTTGAGA+AGG 0.540216 6_2:+44554059 Msa0918080:CDS
GATGAGGAAGAAGGCGGTCG+AGG 0.546686 6_2:+44554713 Msa0918080:CDS
CCGGAGTTCCAATGTTGTGT+TGG 0.553513 6_2:+44554529 Msa0918080:CDS
CAACGAATGGGAGATTGGCA+TGG 0.554304 6_2:+44554593 Msa0918080:CDS
TTCAAGCCAATCAAGACACT+TGG 0.557095 6_2:-44554208 None:intergenic
AATGAACTAAAGAGAACGAT+AGG 0.557569 6_2:-44553632 None:intergenic
GAAGTTCGCGAAAGGGTTGG+AGG 0.566771 6_2:-44553499 None:intergenic
CTAGCAAGAAGTTCGCGAAA+GGG 0.566977 6_2:-44553506 None:intergenic
ACATCGCCATCACCATCTGT+TGG 0.568145 6_2:-44553431 None:intergenic
ACCACTGAAAGCATATGTGC+CGG 0.573183 6_2:+44554510 Msa0918080:CDS
GATTCTTGACTCATTGTGGA+TGG 0.573721 6_2:+44554481 Msa0918080:CDS
TCTAGCAAGAAGTTCGCGAA+AGG 0.574633 6_2:-44553507 None:intergenic
AGAATCCACCAATTGAAGGA+TGG 0.576223 6_2:-44554464 None:intergenic
TTATCACTGAAGCAGCAGAA+AGG 0.578965 6_2:+44554007 Msa0918080:CDS
TTGTGTTTGAATGTTGAGCA+AGG 0.579589 6_2:-44553181 None:intergenic
AACTTTGAGACTATTCCAGA+TGG 0.582933 6_2:+44553401 Msa0918080:CDS
TATGATCGAATCATTTGGAT+CGG 0.583793 6_2:-44553980 None:intergenic
TGGTTGTTCATACATGAACT+TGG 0.585259 6_2:+44554749 Msa0918080:CDS
CCAACACAACATTGGAACTC+CGG 0.586318 6_2:-44554529 None:intergenic
GGTGGATTCTTGACTCATTG+TGG 0.591311 6_2:+44554477 Msa0918080:CDS
GAGCAAGGGTATAAAGCCAA+TGG 0.593702 6_2:-44553166 None:intergenic
TAAAGCCAATGGTTTAATAG+GGG 0.595698 6_2:-44553155 None:intergenic
TCAAAGTCCACATAATCACT+TGG 0.596754 6_2:+44554152 Msa0918080:CDS
TATGGAATTAACACAGCATG+TGG 0.602812 6_2:-44553227 None:intergenic
AAACGCTTGCTCAAATCAAG+AGG 0.611360 6_2:+44553347 Msa0918080:CDS
ATAGAGGCCTAATCACGGAC+TGG 0.614682 6_2:+44554418 Msa0918080:CDS
TCCGGCACATATGCTTTCAG+TGG 0.618444 6_2:-44554511 None:intergenic
TTCAGATAGAGGCCTAATCA+CGG 0.620130 6_2:+44554413 Msa0918080:CDS
GGACAAGACCAGATGTTGCA+TGG 0.620242 6_2:-44553538 None:intergenic
CCCAAAATTCACATAAACAA+CGG 0.620940 6_2:-44554247 None:intergenic
AAAGCCAATGGTTTAATAGG+GGG 0.622254 6_2:-44553154 None:intergenic
AAACTGTTAGAGTTTGCTTG+GGG 0.626923 6_2:+44554294 Msa0918080:CDS
TGTGTTTGAATGTTGAGCAA+GGG 0.627022 6_2:-44553180 None:intergenic
GAAACTATACAAGTAACTGG+AGG 0.628084 6_2:-44553560 None:intergenic
TTCATGTATGAACAACCACC+AGG 0.629091 6_2:-44554744 None:intergenic
TCTTGTCATTGGTGGTTCCG+TGG 0.634681 6_2:+44554362 Msa0918080:CDS
TTAACTCCAACAGATGGTGA+TGG 0.636217 6_2:+44553425 Msa0918080:CDS
AAACTATACAAGTAACTGGA+GGG 0.640189 6_2:-44553559 None:intergenic
GATGGTTTAACTCCAACAGA+TGG 0.640500 6_2:+44553419 Msa0918080:CDS
TGACACCAATGTGAAGAGAG+AGG 0.659921 6_2:+44554620 Msa0918080:CDS
GTCGAGGATACGAGACCTGG+TGG 0.682238 6_2:+44554729 Msa0918080:CDS
TAACTCAGATGACAAAACCA+CGG 0.694388 6_2:-44554379 None:intergenic
AATTGAGATGAGGAAGAAGG+CGG 0.710407 6_2:+44554707 Msa0918080:CDS
CACCAATGTGAAGAGAGAGG+AGG 0.711770 6_2:+44554623 Msa0918080:CDS
ACAAATATTAGGGAACGTCG+AGG 0.721746 6_2:-44554100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GACAAATTTTTCTTTTAAAA+TGG - chr6_2:44553061-44553080 None:intergenic 15.0%
!!! GACAAATTTTTCTTTTAAAA+TGG - chr6_2:44553061-44553080 None:intergenic 15.0%
!! AGTATTAAAAATAAAAGCAG+AGG - chr6_2:44554043-44554062 None:intergenic 20.0%
!!! AACAATTTTTATGGATCATT+AGG + chr6_2:44554334-44554353 Msa0918080:CDS 20.0%
!! AGTATTAAAAATAAAAGCAG+AGG - chr6_2:44554043-44554062 None:intergenic 20.0%
!!! AACAATTTTTATGGATCATT+AGG + chr6_2:44554334-44554353 Msa0918080:CDS 20.0%
! ATAAAGCCAATGGTTTAATA+GGG - chr6_2:44553159-44553178 None:intergenic 25.0%
! TATAAAGCCAATGGTTTAAT+AGG - chr6_2:44553160-44553179 None:intergenic 25.0%
! TTTCGTACATTGTTAGATAA+AGG + chr6_2:44553686-44553705 Msa0918080:CDS 25.0%
!! GATTAATTGTTACCTTTTAG+TGG - chr6_2:44553719-44553738 None:intergenic 25.0%
! CAAAAGTTGTCAACTATTAA+TGG - chr6_2:44553842-44553861 None:intergenic 25.0%
! AATTCTATGATCGAATCATT+TGG - chr6_2:44553988-44554007 None:intergenic 25.0%
! GACTTAAAAGTGAAGATAAA+GGG - chr6_2:44554134-44554153 None:intergenic 25.0%
! TGACTTAAAAGTGAAGATAA+AGG - chr6_2:44554135-44554154 None:intergenic 25.0%
!!! TAAAAATTGTTGCTTGCTAT+TGG - chr6_2:44554325-44554344 None:intergenic 25.0%
!! ATAGCAAGCAACAATTTTTA+TGG + chr6_2:44554325-44554344 Msa0918080:CDS 25.0%
! AAGAATGAAATTTCAGATAG+AGG + chr6_2:44554402-44554421 Msa0918080:CDS 25.0%
! TTGGTTAATGAATTGATGTT+GGG + chr6_2:44554654-44554673 Msa0918080:CDS 25.0%
! ATAAAGCCAATGGTTTAATA+GGG - chr6_2:44553159-44553178 None:intergenic 25.0%
! TATAAAGCCAATGGTTTAAT+AGG - chr6_2:44553160-44553179 None:intergenic 25.0%
! TTTCGTACATTGTTAGATAA+AGG + chr6_2:44553686-44553705 Msa0918080:CDS 25.0%
!! GATTAATTGTTACCTTTTAG+TGG - chr6_2:44553719-44553738 None:intergenic 25.0%
! CAAAAGTTGTCAACTATTAA+TGG - chr6_2:44553842-44553861 None:intergenic 25.0%
! AATTCTATGATCGAATCATT+TGG - chr6_2:44553988-44554007 None:intergenic 25.0%
! GACTTAAAAGTGAAGATAAA+GGG - chr6_2:44554134-44554153 None:intergenic 25.0%
! TGACTTAAAAGTGAAGATAA+AGG - chr6_2:44554135-44554154 None:intergenic 25.0%
!!! TAAAAATTGTTGCTTGCTAT+TGG - chr6_2:44554325-44554344 None:intergenic 25.0%
!! ATAGCAAGCAACAATTTTTA+TGG + chr6_2:44554325-44554344 Msa0918080:CDS 25.0%
! AAGAATGAAATTTCAGATAG+AGG + chr6_2:44554402-44554421 Msa0918080:CDS 25.0%
! TTGGTTAATGAATTGATGTT+GGG + chr6_2:44554654-44554673 Msa0918080:CDS 25.0%
GCATCAATTATTGTGTAACT+TGG + chr6_2:44553027-44553046 Msa0918080:five_prime_UTR 30.0%
! GTCAATGTTTCTTGGATTTT+CGG - chr6_2:44553129-44553148 None:intergenic 30.0%
TAAAGCCAATGGTTTAATAG+GGG - chr6_2:44553158-44553177 None:intergenic 30.0%
TTAATTCCATATCCAGTTCA+AGG + chr6_2:44553239-44553258 Msa0918080:CDS 30.0%
!! ATTGTATTCGGTGTTTACAT+AGG - chr6_2:44553324-44553343 None:intergenic 30.0%
!! TTAAAACCATCAAGAGCATT+AGG - chr6_2:44553374-44553393 None:intergenic 30.0%
AAACTATACAAGTAACTGGA+GGG - chr6_2:44553562-44553581 None:intergenic 30.0%
TCAGAAACTATACAAGTAAC+TGG - chr6_2:44553566-44553585 None:intergenic 30.0%
AATGAACTAAAGAGAACGAT+AGG - chr6_2:44553635-44553654 None:intergenic 30.0%
! AATGCATGTACATTTTTGAC+TGG + chr6_2:44553656-44553675 Msa0918080:CDS 30.0%
CTTCTTTCTTTCTTCATATG+TGG + chr6_2:44553738-44553757 Msa0918080:intron 30.0%
TTTCTTTCTTCATATGTGGA+GGG + chr6_2:44553742-44553761 Msa0918080:intron 30.0%
TATGATCGAATCATTTGGAT+CGG - chr6_2:44553983-44554002 None:intergenic 30.0%
TACTTCTAATGAACTTGAGA+AGG + chr6_2:44554059-44554078 Msa0918080:CDS 30.0%
TTCCCTAATATTTGTGCTAT+TGG + chr6_2:44554108-44554127 Msa0918080:CDS 30.0%
CAAGTTTAAGTACCAATCTT+TGG + chr6_2:44554175-44554194 Msa0918080:CDS 30.0%
! TCCGTTGTTTATGTGAATTT+TGG + chr6_2:44554246-44554265 Msa0918080:CDS 30.0%
CCCAAAATTCACATAAACAA+CGG - chr6_2:44554250-44554269 None:intergenic 30.0%
! CCGTTGTTTATGTGAATTTT+GGG + chr6_2:44554247-44554266 Msa0918080:CDS 30.0%
! AAAAACTGTTAGAGTTTGCT+TGG + chr6_2:44554292-44554311 Msa0918080:CDS 30.0%
! AAAACTGTTAGAGTTTGCTT+GGG + chr6_2:44554293-44554312 Msa0918080:CDS 30.0%
GTATTAAACCATCCTTCAAT+TGG + chr6_2:44554456-44554475 Msa0918080:CDS 30.0%
CAGATATATTTGCAACGAAT+GGG + chr6_2:44554581-44554600 Msa0918080:CDS 30.0%
GTTGGTTAATGAATTGATGT+TGG + chr6_2:44554653-44554672 Msa0918080:CDS 30.0%
CGAAAAAGATAATTGAGATG+AGG + chr6_2:44554697-44554716 Msa0918080:CDS 30.0%
GAACTTGGAAAAAGTGATTA+AGG + chr6_2:44554764-44554783 Msa0918080:CDS 30.0%
GCATCAATTATTGTGTAACT+TGG + chr6_2:44553027-44553046 Msa0918080:five_prime_UTR 30.0%
! GTCAATGTTTCTTGGATTTT+CGG - chr6_2:44553129-44553148 None:intergenic 30.0%
TAAAGCCAATGGTTTAATAG+GGG - chr6_2:44553158-44553177 None:intergenic 30.0%
TTAATTCCATATCCAGTTCA+AGG + chr6_2:44553239-44553258 Msa0918080:CDS 30.0%
!! ATTGTATTCGGTGTTTACAT+AGG - chr6_2:44553324-44553343 None:intergenic 30.0%
!! TTAAAACCATCAAGAGCATT+AGG - chr6_2:44553374-44553393 None:intergenic 30.0%
AAACTATACAAGTAACTGGA+GGG - chr6_2:44553562-44553581 None:intergenic 30.0%
TCAGAAACTATACAAGTAAC+TGG - chr6_2:44553566-44553585 None:intergenic 30.0%
AATGAACTAAAGAGAACGAT+AGG - chr6_2:44553635-44553654 None:intergenic 30.0%
! AATGCATGTACATTTTTGAC+TGG + chr6_2:44553656-44553675 Msa0918080:CDS 30.0%
CTTCTTTCTTTCTTCATATG+TGG + chr6_2:44553738-44553757 Msa0918080:intron 30.0%
TTTCTTTCTTCATATGTGGA+GGG + chr6_2:44553742-44553761 Msa0918080:intron 30.0%
TATGATCGAATCATTTGGAT+CGG - chr6_2:44553983-44554002 None:intergenic 30.0%
TACTTCTAATGAACTTGAGA+AGG + chr6_2:44554059-44554078 Msa0918080:CDS 30.0%
TTCCCTAATATTTGTGCTAT+TGG + chr6_2:44554108-44554127 Msa0918080:CDS 30.0%
CAAGTTTAAGTACCAATCTT+TGG + chr6_2:44554175-44554194 Msa0918080:CDS 30.0%
! TCCGTTGTTTATGTGAATTT+TGG + chr6_2:44554246-44554265 Msa0918080:CDS 30.0%
CCCAAAATTCACATAAACAA+CGG - chr6_2:44554250-44554269 None:intergenic 30.0%
! CCGTTGTTTATGTGAATTTT+GGG + chr6_2:44554247-44554266 Msa0918080:CDS 30.0%
! AAAAACTGTTAGAGTTTGCT+TGG + chr6_2:44554292-44554311 Msa0918080:CDS 30.0%
! AAAACTGTTAGAGTTTGCTT+GGG + chr6_2:44554293-44554312 Msa0918080:CDS 30.0%
GTATTAAACCATCCTTCAAT+TGG + chr6_2:44554456-44554475 Msa0918080:CDS 30.0%
CAGATATATTTGCAACGAAT+GGG + chr6_2:44554581-44554600 Msa0918080:CDS 30.0%
GTTGGTTAATGAATTGATGT+TGG + chr6_2:44554653-44554672 Msa0918080:CDS 30.0%
CGAAAAAGATAATTGAGATG+AGG + chr6_2:44554697-44554716 Msa0918080:CDS 30.0%
GAACTTGGAAAAAGTGATTA+AGG + chr6_2:44554764-44554783 Msa0918080:CDS 30.0%
AAAGCCAATGGTTTAATAGG+GGG - chr6_2:44553157-44553176 None:intergenic 35.0%
TGTGTTTGAATGTTGAGCAA+GGG - chr6_2:44553183-44553202 None:intergenic 35.0%
TTGTGTTTGAATGTTGAGCA+AGG - chr6_2:44553184-44553203 None:intergenic 35.0%
TATGGAATTAACACAGCATG+TGG - chr6_2:44553230-44553249 None:intergenic 35.0%
!! GTTTCAGCAATGGATTGATA+TGG - chr6_2:44553265-44553284 None:intergenic 35.0%
!! AGTTTTGCTAGTTTCAGCAA+TGG - chr6_2:44553275-44553294 None:intergenic 35.0%
CAAGCGTTTGTGATTGTATT+CGG - chr6_2:44553336-44553355 None:intergenic 35.0%
!! AACTTTGAGACTATTCCAGA+TGG + chr6_2:44553401-44553420 Msa0918080:CDS 35.0%
GAAACTATACAAGTAACTGG+AGG - chr6_2:44553563-44553582 None:intergenic 35.0%
AAAGGTCTCATACCACTAAA+AGG + chr6_2:44553704-44553723 Msa0918080:CDS 35.0%
CTTTCTTTCTTCATATGTGG+AGG + chr6_2:44553741-44553760 Msa0918080:intron 35.0%
ATGCATGTTGTTATGTGTGT+GGG + chr6_2:44553765-44553784 Msa0918080:intron 35.0%
AGGATTTGCCTGACTTTATA+AGG + chr6_2:44553953-44553972 Msa0918080:CDS 35.0%
TCGGTAATCCTTATAAAGTC+AGG - chr6_2:44553964-44553983 None:intergenic 35.0%
GGCCAATAGCACAAATATTA+GGG - chr6_2:44554113-44554132 None:intergenic 35.0%
TCAAAGTCCACATAATCACT+TGG + chr6_2:44554152-44554171 Msa0918080:CDS 35.0%
AAACTTGCCAAGTGATTATG+TGG - chr6_2:44554162-44554181 None:intergenic 35.0%
GGTATCTTCTTTCCAAAGAT+TGG - chr6_2:44554190-44554209 None:intergenic 35.0%
AAGATACCAAGTGTCTTGAT+TGG + chr6_2:44554202-44554221 Msa0918080:CDS 35.0%
!! TCTTGATTGGCTTGAATCAA+AGG + chr6_2:44554215-44554234 Msa0918080:CDS 35.0%
! TTCACATAAACAACGGACTT+TGG - chr6_2:44554243-44554262 None:intergenic 35.0%
! AAACTGTTAGAGTTTGCTTG+GGG + chr6_2:44554294-44554313 Msa0918080:CDS 35.0%
TAACTCAGATGACAAAACCA+CGG - chr6_2:44554382-44554401 None:intergenic 35.0%
TGGTTTAATACTTGCTCTTG+CGG - chr6_2:44554447-44554466 None:intergenic 35.0%
TTAAACCATCCTTCAATTGG+TGG + chr6_2:44554459-44554478 Msa0918080:CDS 35.0%
CAAATATATCTGCAGTTTGC+TGG - chr6_2:44554573-44554592 None:intergenic 35.0%
GCAGATATATTTGCAACGAA+TGG + chr6_2:44554580-44554599 Msa0918080:CDS 35.0%
GATAATTGAGATGAGGAAGA+AGG + chr6_2:44554704-44554723 Msa0918080:CDS 35.0%
TGGTTGTTCATACATGAACT+TGG + chr6_2:44554749-44554768 Msa0918080:CDS 35.0%
CTTGGAAAAAGTGATTAAGG+AGG + chr6_2:44554767-44554786 Msa0918080:CDS 35.0%
AAAGCCAATGGTTTAATAGG+GGG - chr6_2:44553157-44553176 None:intergenic 35.0%
TGTGTTTGAATGTTGAGCAA+GGG - chr6_2:44553183-44553202 None:intergenic 35.0%
TTGTGTTTGAATGTTGAGCA+AGG - chr6_2:44553184-44553203 None:intergenic 35.0%
TATGGAATTAACACAGCATG+TGG - chr6_2:44553230-44553249 None:intergenic 35.0%
!! GTTTCAGCAATGGATTGATA+TGG - chr6_2:44553265-44553284 None:intergenic 35.0%
!! AGTTTTGCTAGTTTCAGCAA+TGG - chr6_2:44553275-44553294 None:intergenic 35.0%
CAAGCGTTTGTGATTGTATT+CGG - chr6_2:44553336-44553355 None:intergenic 35.0%
!! AACTTTGAGACTATTCCAGA+TGG + chr6_2:44553401-44553420 Msa0918080:CDS 35.0%
GAAACTATACAAGTAACTGG+AGG - chr6_2:44553563-44553582 None:intergenic 35.0%
AAAGGTCTCATACCACTAAA+AGG + chr6_2:44553704-44553723 Msa0918080:CDS 35.0%
CTTTCTTTCTTCATATGTGG+AGG + chr6_2:44553741-44553760 Msa0918080:intron 35.0%
ATGCATGTTGTTATGTGTGT+GGG + chr6_2:44553765-44553784 Msa0918080:intron 35.0%
AGGATTTGCCTGACTTTATA+AGG + chr6_2:44553953-44553972 Msa0918080:CDS 35.0%
TCGGTAATCCTTATAAAGTC+AGG - chr6_2:44553964-44553983 None:intergenic 35.0%
GGCCAATAGCACAAATATTA+GGG - chr6_2:44554113-44554132 None:intergenic 35.0%
TCAAAGTCCACATAATCACT+TGG + chr6_2:44554152-44554171 Msa0918080:CDS 35.0%
AAACTTGCCAAGTGATTATG+TGG - chr6_2:44554162-44554181 None:intergenic 35.0%
GGTATCTTCTTTCCAAAGAT+TGG - chr6_2:44554190-44554209 None:intergenic 35.0%
AAGATACCAAGTGTCTTGAT+TGG + chr6_2:44554202-44554221 Msa0918080:CDS 35.0%
!! TCTTGATTGGCTTGAATCAA+AGG + chr6_2:44554215-44554234 Msa0918080:CDS 35.0%
! TTCACATAAACAACGGACTT+TGG - chr6_2:44554243-44554262 None:intergenic 35.0%
! AAACTGTTAGAGTTTGCTTG+GGG + chr6_2:44554294-44554313 Msa0918080:CDS 35.0%
TAACTCAGATGACAAAACCA+CGG - chr6_2:44554382-44554401 None:intergenic 35.0%
TGGTTTAATACTTGCTCTTG+CGG - chr6_2:44554447-44554466 None:intergenic 35.0%
TTAAACCATCCTTCAATTGG+TGG + chr6_2:44554459-44554478 Msa0918080:CDS 35.0%
CAAATATATCTGCAGTTTGC+TGG - chr6_2:44554573-44554592 None:intergenic 35.0%
GCAGATATATTTGCAACGAA+TGG + chr6_2:44554580-44554599 Msa0918080:CDS 35.0%
GATAATTGAGATGAGGAAGA+AGG + chr6_2:44554704-44554723 Msa0918080:CDS 35.0%
TGGTTGTTCATACATGAACT+TGG + chr6_2:44554749-44554768 Msa0918080:CDS 35.0%
CTTGGAAAAAGTGATTAAGG+AGG + chr6_2:44554767-44554786 Msa0918080:CDS 35.0%
! ATATGGCCTTGAACTGGATA+TGG - chr6_2:44553248-44553267 None:intergenic 40.0%
GCAAAACTTCTTCACCTTAG+AGG + chr6_2:44553287-44553306 Msa0918080:CDS 40.0%
AGGTTATGTGAAAGCCTCTA+AGG - chr6_2:44553304-44553323 None:intergenic 40.0%
AAACGCTTGCTCAAATCAAG+AGG + chr6_2:44553347-44553366 Msa0918080:CDS 40.0%
TCTGTTGGAGTTAAACCATC+TGG - chr6_2:44553419-44553438 None:intergenic 40.0%
GATGGTTTAACTCCAACAGA+TGG + chr6_2:44553419-44553438 Msa0918080:CDS 40.0%
TTAACTCCAACAGATGGTGA+TGG + chr6_2:44553425-44553444 Msa0918080:CDS 40.0%
TTCAGCAGCTTGTACTGTAA+AGG - chr6_2:44553600-44553619 None:intergenic 40.0%
GATGCATGTTGTTATGTGTG+TGG + chr6_2:44553764-44553783 Msa0918080:intron 40.0%
ACTAAAGTAGACTGTATCCC+AGG + chr6_2:44553910-44553929 Msa0918080:intron 40.0%
ATTGCAGAACTTTCGACTGA+AGG + chr6_2:44553933-44553952 Msa0918080:CDS 40.0%
TTATCACTGAAGCAGCAGAA+AGG + chr6_2:44554007-44554026 Msa0918080:CDS 40.0%
TATCACTGAAGCAGCAGAAA+GGG + chr6_2:44554008-44554027 Msa0918080:CDS 40.0%
ACAAATATTAGGGAACGTCG+AGG - chr6_2:44554103-44554122 None:intergenic 40.0%
GGGCCAATAGCACAAATATT+AGG - chr6_2:44554114-44554133 None:intergenic 40.0%
TTCAAGCCAATCAAGACACT+TGG - chr6_2:44554211-44554230 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG + chr6_2:44554351-44554370 Msa0918080:CDS 40.0%
TTCAGATAGAGGCCTAATCA+CGG + chr6_2:44554413-44554432 Msa0918080:CDS 40.0%
GGTTTAATACTTGCTCTTGC+GGG - chr6_2:44554446-44554465 None:intergenic 40.0%
AGAATCCACCAATTGAAGGA+TGG - chr6_2:44554467-44554486 None:intergenic 40.0%
GTCAAGAATCCACCAATTGA+AGG - chr6_2:44554471-44554490 None:intergenic 40.0%
GATTCTTGACTCATTGTGGA+TGG + chr6_2:44554481-44554500 Msa0918080:CDS 40.0%
AAAAACGGCCAACACAACAT+TGG - chr6_2:44554540-44554559 None:intergenic 40.0%
ATTTGCAACGAATGGGAGAT+TGG + chr6_2:44554588-44554607 Msa0918080:CDS 40.0%
GAATTGATGTTGGGAGAGAA+AGG + chr6_2:44554663-44554682 Msa0918080:CDS 40.0%
AATTGAGATGAGGAAGAAGG+CGG + chr6_2:44554707-44554726 Msa0918080:CDS 40.0%
TTCATGTATGAACAACCACC+AGG - chr6_2:44554747-44554766 None:intergenic 40.0%
! ATATGGCCTTGAACTGGATA+TGG - chr6_2:44553248-44553267 None:intergenic 40.0%
GCAAAACTTCTTCACCTTAG+AGG + chr6_2:44553287-44553306 Msa0918080:CDS 40.0%
AGGTTATGTGAAAGCCTCTA+AGG - chr6_2:44553304-44553323 None:intergenic 40.0%
AAACGCTTGCTCAAATCAAG+AGG + chr6_2:44553347-44553366 Msa0918080:CDS 40.0%
TCTGTTGGAGTTAAACCATC+TGG - chr6_2:44553419-44553438 None:intergenic 40.0%
GATGGTTTAACTCCAACAGA+TGG + chr6_2:44553419-44553438 Msa0918080:CDS 40.0%
TTAACTCCAACAGATGGTGA+TGG + chr6_2:44553425-44553444 Msa0918080:CDS 40.0%
TTCAGCAGCTTGTACTGTAA+AGG - chr6_2:44553600-44553619 None:intergenic 40.0%
GATGCATGTTGTTATGTGTG+TGG + chr6_2:44553764-44553783 Msa0918080:intron 40.0%
ACTAAAGTAGACTGTATCCC+AGG + chr6_2:44553910-44553929 Msa0918080:intron 40.0%
ATTGCAGAACTTTCGACTGA+AGG + chr6_2:44553933-44553952 Msa0918080:CDS 40.0%
TTATCACTGAAGCAGCAGAA+AGG + chr6_2:44554007-44554026 Msa0918080:CDS 40.0%
TATCACTGAAGCAGCAGAAA+GGG + chr6_2:44554008-44554027 Msa0918080:CDS 40.0%
ACAAATATTAGGGAACGTCG+AGG - chr6_2:44554103-44554122 None:intergenic 40.0%
GGGCCAATAGCACAAATATT+AGG - chr6_2:44554114-44554133 None:intergenic 40.0%
TTCAAGCCAATCAAGACACT+TGG - chr6_2:44554211-44554230 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG + chr6_2:44554351-44554370 Msa0918080:CDS 40.0%
TTCAGATAGAGGCCTAATCA+CGG + chr6_2:44554413-44554432 Msa0918080:CDS 40.0%
GGTTTAATACTTGCTCTTGC+GGG - chr6_2:44554446-44554465 None:intergenic 40.0%
AGAATCCACCAATTGAAGGA+TGG - chr6_2:44554467-44554486 None:intergenic 40.0%
GTCAAGAATCCACCAATTGA+AGG - chr6_2:44554471-44554490 None:intergenic 40.0%
GATTCTTGACTCATTGTGGA+TGG + chr6_2:44554481-44554500 Msa0918080:CDS 40.0%
AAAAACGGCCAACACAACAT+TGG - chr6_2:44554540-44554559 None:intergenic 40.0%
ATTTGCAACGAATGGGAGAT+TGG + chr6_2:44554588-44554607 Msa0918080:CDS 40.0%
GAATTGATGTTGGGAGAGAA+AGG + chr6_2:44554663-44554682 Msa0918080:CDS 40.0%
AATTGAGATGAGGAAGAAGG+CGG + chr6_2:44554707-44554726 Msa0918080:CDS 40.0%
TTCATGTATGAACAACCACC+AGG - chr6_2:44554747-44554766 None:intergenic 40.0%
GGGATGCAGTCAATGTTTCT+TGG - chr6_2:44553137-44553156 None:intergenic 45.0%
GCATCCCCCTATTAAACCAT+TGG + chr6_2:44553150-44553169 Msa0918080:five_prime_UTR 45.0%
! GAGCAAGGGTATAAAGCCAA+TGG - chr6_2:44553169-44553188 None:intergenic 45.0%
! GGATTGATATGGCCTTGAAC+TGG - chr6_2:44553254-44553273 None:intergenic 45.0%
AGAGGTCCTAATGCTCTTGA+TGG + chr6_2:44553365-44553384 Msa0918080:CDS 45.0%
CTAGCAAGAAGTTCGCGAAA+GGG - chr6_2:44553509-44553528 None:intergenic 45.0%
TCTAGCAAGAAGTTCGCGAA+AGG - chr6_2:44553510-44553529 None:intergenic 45.0%
CTTCATGACCATGCAACATC+TGG + chr6_2:44553530-44553549 Msa0918080:CDS 45.0%
GTCGAAAGTTCTGCAATCCT+GGG - chr6_2:44553930-44553949 None:intergenic 45.0%
AGTCGAAAGTTCTGCAATCC+TGG - chr6_2:44553931-44553950 None:intergenic 45.0%
GAACCACCAATGACAAGATC+AGG - chr6_2:44554360-44554379 None:intergenic 45.0%
! GGTGGATTCTTGACTCATTG+TGG + chr6_2:44554477-44554496 Msa0918080:CDS 45.0%
! ACCACTGAAAGCATATGTGC+CGG + chr6_2:44554510-44554529 Msa0918080:CDS 45.0%
CCAACACAACATTGGAACTC+CGG - chr6_2:44554532-44554551 None:intergenic 45.0%
GCTGGCTGATCAGCAAAAAA+CGG - chr6_2:44554555-44554574 None:intergenic 45.0%
TGACACCAATGTGAAGAGAG+AGG + chr6_2:44554620-44554639 Msa0918080:CDS 45.0%
GGGATGCAGTCAATGTTTCT+TGG - chr6_2:44553137-44553156 None:intergenic 45.0%
GCATCCCCCTATTAAACCAT+TGG + chr6_2:44553150-44553169 Msa0918080:five_prime_UTR 45.0%
! GAGCAAGGGTATAAAGCCAA+TGG - chr6_2:44553169-44553188 None:intergenic 45.0%
! GGATTGATATGGCCTTGAAC+TGG - chr6_2:44553254-44553273 None:intergenic 45.0%
AGAGGTCCTAATGCTCTTGA+TGG + chr6_2:44553365-44553384 Msa0918080:CDS 45.0%
CTAGCAAGAAGTTCGCGAAA+GGG - chr6_2:44553509-44553528 None:intergenic 45.0%
TCTAGCAAGAAGTTCGCGAA+AGG - chr6_2:44553510-44553529 None:intergenic 45.0%
CTTCATGACCATGCAACATC+TGG + chr6_2:44553530-44553549 Msa0918080:CDS 45.0%
GTCGAAAGTTCTGCAATCCT+GGG - chr6_2:44553930-44553949 None:intergenic 45.0%
AGTCGAAAGTTCTGCAATCC+TGG - chr6_2:44553931-44553950 None:intergenic 45.0%
GAACCACCAATGACAAGATC+AGG - chr6_2:44554360-44554379 None:intergenic 45.0%
! GGTGGATTCTTGACTCATTG+TGG + chr6_2:44554477-44554496 Msa0918080:CDS 45.0%
! ACCACTGAAAGCATATGTGC+CGG + chr6_2:44554510-44554529 Msa0918080:CDS 45.0%
CCAACACAACATTGGAACTC+CGG - chr6_2:44554532-44554551 None:intergenic 45.0%
GCTGGCTGATCAGCAAAAAA+CGG - chr6_2:44554555-44554574 None:intergenic 45.0%
TGACACCAATGTGAAGAGAG+AGG + chr6_2:44554620-44554639 Msa0918080:CDS 45.0%
ACATCGCCATCACCATCTGT+TGG - chr6_2:44553434-44553453 None:intergenic 50.0%
CAAGAAGTTCGCGAAAGGGT+TGG - chr6_2:44553505-44553524 None:intergenic 50.0%
GGACAAGACCAGATGTTGCA+TGG - chr6_2:44553541-44553560 None:intergenic 50.0%
AGGCCTGATCTTGTCATTGG+TGG + chr6_2:44554354-44554373 Msa0918080:CDS 50.0%
! TCTTGTCATTGGTGGTTCCG+TGG + chr6_2:44554362-44554381 Msa0918080:CDS 50.0%
ATAGAGGCCTAATCACGGAC+TGG + chr6_2:44554418-44554437 Msa0918080:CDS 50.0%
TCCGGCACATATGCTTTCAG+TGG - chr6_2:44554514-44554533 None:intergenic 50.0%
CCGGAGTTCCAATGTTGTGT+TGG + chr6_2:44554529-44554548 Msa0918080:CDS 50.0%
CAACGAATGGGAGATTGGCA+TGG + chr6_2:44554593-44554612 Msa0918080:CDS 50.0%
CACCAATGTGAAGAGAGAGG+AGG + chr6_2:44554623-44554642 Msa0918080:CDS 50.0%
CACCTCCTCTCTCTTCACAT+TGG - chr6_2:44554628-44554647 None:intergenic 50.0%
CAATGTGAAGAGAGAGGAGG+TGG + chr6_2:44554626-44554645 Msa0918080:CDS 50.0%
ACATCGCCATCACCATCTGT+TGG - chr6_2:44553434-44553453 None:intergenic 50.0%
CAAGAAGTTCGCGAAAGGGT+TGG - chr6_2:44553505-44553524 None:intergenic 50.0%
GGACAAGACCAGATGTTGCA+TGG - chr6_2:44553541-44553560 None:intergenic 50.0%
AGGCCTGATCTTGTCATTGG+TGG + chr6_2:44554354-44554373 Msa0918080:CDS 50.0%
! TCTTGTCATTGGTGGTTCCG+TGG + chr6_2:44554362-44554381 Msa0918080:CDS 50.0%
ATAGAGGCCTAATCACGGAC+TGG + chr6_2:44554418-44554437 Msa0918080:CDS 50.0%
TCCGGCACATATGCTTTCAG+TGG - chr6_2:44554514-44554533 None:intergenic 50.0%
CCGGAGTTCCAATGTTGTGT+TGG + chr6_2:44554529-44554548 Msa0918080:CDS 50.0%
CAACGAATGGGAGATTGGCA+TGG + chr6_2:44554593-44554612 Msa0918080:CDS 50.0%
CACCAATGTGAAGAGAGAGG+AGG + chr6_2:44554623-44554642 Msa0918080:CDS 50.0%
CACCTCCTCTCTCTTCACAT+TGG - chr6_2:44554628-44554647 None:intergenic 50.0%
CAATGTGAAGAGAGAGGAGG+TGG + chr6_2:44554626-44554645 Msa0918080:CDS 50.0%
GAAGTTCGCGAAAGGGTTGG+AGG - chr6_2:44553502-44553521 None:intergenic 55.0%
GAGAGAGGAGGTGGAGAAGT+TGG + chr6_2:44554635-44554654 Msa0918080:CDS 55.0%
GAAGTTCGCGAAAGGGTTGG+AGG - chr6_2:44553502-44553521 None:intergenic 55.0%
GAGAGAGGAGGTGGAGAAGT+TGG + chr6_2:44554635-44554654 Msa0918080:CDS 55.0%
GATGAGGAAGAAGGCGGTCG+AGG + chr6_2:44554713-44554732 Msa0918080:CDS 60.0%
GTCGAGGATACGAGACCTGG+TGG + chr6_2:44554729-44554748 Msa0918080:CDS 60.0%
GATGAGGAAGAAGGCGGTCG+AGG + chr6_2:44554713-44554732 Msa0918080:CDS 60.0%
GTCGAGGATACGAGACCTGG+TGG + chr6_2:44554729-44554748 Msa0918080:CDS 60.0%
GCGGGCACCAGTCCGTGATT+AGG - chr6_2:44554428-44554447 None:intergenic 65.0%
GCGGTCGAGGATACGAGACC+TGG + chr6_2:44554726-44554745 Msa0918080:CDS 65.0%
GCGGGCACCAGTCCGTGATT+AGG - chr6_2:44554428-44554447 None:intergenic 65.0%
GCGGTCGAGGATACGAGACC+TGG + chr6_2:44554726-44554745 Msa0918080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 44553015 44554815 44553015 ID=Msa0918080;Name=Msa0918080
chr6_2 mRNA 44553015 44554815 44553015 ID=Msa0918080-mRNA-1;Parent=Msa0918080;Name=Msa0918080-mRNA-1;_AED=0.14;_eAED=0.14;_QI=197|0|0.5|1|1|1|2|0|465
chr6_2 exon 44553015 44553725 44553015 ID=Msa0918080-mRNA-1:exon:7043;Parent=Msa0918080-mRNA-1
chr6_2 exon 44553932 44554815 44553932 ID=Msa0918080-mRNA-1:exon:7044;Parent=Msa0918080-mRNA-1
chr6_2 five_prime_UTR 44553015 44553211 44553015 ID=Msa0918080-mRNA-1:five_prime_utr;Parent=Msa0918080-mRNA-1
chr6_2 CDS 44553212 44553725 44553212 ID=Msa0918080-mRNA-1:cds;Parent=Msa0918080-mRNA-1
chr6_2 CDS 44553932 44554815 44553932 ID=Msa0918080-mRNA-1:cds;Parent=Msa0918080-mRNA-1
Gene Sequence

>Msa0918080

ATGAGTGATAAAAAACCACATGCTGTGTTAATTCCATATCCAGTTCAAGGCCATATCAATCCATTGCTGAAACTAGCAAAACTTCTTCACCTTAGAGGCTTTCACATAACCTATGTAAACACCGAATACAATCACAAACGCTTGCTCAAATCAAGAGGTCCTAATGCTCTTGATGGTTTTAATGACTTTAACTTTGAGACTATTCCAGATGGTTTAACTCCAACAGATGGTGATGGCGATGTTAGTCAAGACATATTCGCTCTTTGTAAATCAATCAGAACGAACTTCCTCCAACCCTTTCGCGAACTTCTTGCTAGACTTCATGACCATGCAACATCTGGTCTTGTCCCTCCAGTTACTTGTATAGTTTCTGATATTAGCATGTCCTTTACAGTACAAGCTGCTGAAGAACTTTCACTTCCTATCGTTCTCTTTAGTTCATTCAATGCATGTACATTTTTGACTGGTATTCATTTTCGTACATTGTTAGATAAAGGTCTCATACCACTAAAAGGATTGCAGAACTTTCGACTGAAGGATTTGCCTGACTTTATAAGGATTACCGATCCAAATGATTCGATCATAGAATTTATCACTGAAGCAGCAGAAAGGGCTCACAGAGCCTCTGCTTTTATTTTTAATACTTCTAATGAACTTGAGAAGGATGTAATGAATGTTCTCTCCTCGACGTTCCCTAATATTTGTGCTATTGGCCCTTTATCTTCACTTTTAAGTCAAAGTCCACATAATCACTTGGCAAGTTTAAGTACCAATCTTTGGAAAGAAGATACCAAGTGTCTTGATTGGCTTGAATCAAAGGAACCAAAGTCCGTTGTTTATGTGAATTTTGGGAGCATGACAGTTATGACTGCAGAAAAACTGTTAGAGTTTGCTTGGGGATTGACCAATAGCAAGCAACAATTTTTATGGATCATTAGGCCTGATCTTGTCATTGGTGGTTCCGTGGTTTTGTCATCTGAGTTAAAGAATGAAATTTCAGATAGAGGCCTAATCACGGACTGGTGCCCGCAAGAGCAAGTATTAAACCATCCTTCAATTGGTGGATTCTTGACTCATTGTGGATGGAACTCAACCACTGAAAGCATATGTGCCGGAGTTCCAATGTTGTGTTGGCCGTTTTTTGCTGATCAGCCAGCAAACTGCAGATATATTTGCAACGAATGGGAGATTGGCATGGAAATTGACACCAATGTGAAGAGAGAGGAGGTGGAGAAGTTGGTTAATGAATTGATGTTGGGAGAGAAAGGAAAGAAGATGACGAAAAAGATAATTGAGATGAGGAAGAAGGCGGTCGAGGATACGAGACCTGGTGGTTGTTCATACATGAACTTGGAAAAAGTGATTAAGGAGGTTTTGTTTAAACAAAATCAAATCTAA

Protein sequence

>Msa0918080

MSDKKPHAVLIPYPVQGHINPLLKLAKLLHLRGFHITYVNTEYNHKRLLKSRGPNALDGFNDFNFETIPDGLTPTDGDGDVSQDIFALCKSIRTNFLQPFRELLARLHDHATSGLVPPVTCIVSDISMSFTVQAAEELSLPIVLFSSFNACTFLTGIHFRTLLDKGLIPLKGLQNFRLKDLPDFIRITDPNDSIIEFITEAAERAHRASAFIFNTSNELEKDVMNVLSSTFPNICAIGPLSSLLSQSPHNHLASLSTNLWKEDTKCLDWLESKEPKSVVYVNFGSMTVMTAEKLLEFAWGLTNSKQQFLWIIRPDLVIGGSVVLSSELKNEISDRGLITDWCPQEQVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPANCRYICNEWEIGMEIDTNVKREEVEKLVNELMLGEKGKKMTKKIIEMRKKAVEDTRPGGCSYMNLEKVIKEVLFKQNQI*