AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208050 MtrunA17_Chr4g0053241 96.761 247 8 0 1 247 1 247 0.0 496
Msa1208050 MtrunA17_Chr4g0053031 85.081 248 37 0 1 248 1 248 1.24e-162 450
Msa1208050 MtrunA17_Chr4g0053331 79.757 247 45 1 1 247 1 242 6.99e-149 415
Msa1208050 MtrunA17_Chr4g0053021 82.186 247 42 1 1 247 1 245 4.43e-143 400
Msa1208050 MtrunA17_Chr4g0044581 68.443 244 72 1 4 247 8 246 2.39e-126 358
Msa1208050 MtrunA17_Chr8g0344401 58.009 231 95 1 18 246 3 233 2.93e-91 268
Msa1208050 MtrunA17_Chr8g0389361 55.804 224 98 1 24 247 17 239 7.82e-83 247
Msa1208050 MtrunA17_Chr6g0487981 56.637 226 95 2 23 247 14 237 1.11e-82 247
Msa1208050 MtrunA17_Chr4g0051041 55.310 226 98 3 22 245 3 227 4.58e-81 243
Msa1208050 MtrunA17_Chr2g0312921 36.015 261 126 8 8 246 56 297 3.55e-46 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208050 AT4G34050.1 68.571 245 76 1 5 248 15 259 4.98e-127 360
Msa1208050 AT4G34050.3 68.571 245 76 1 5 248 42 286 6.48e-127 361
Msa1208050 AT4G26220.1 57.522 226 95 1 22 247 7 231 1.05e-93 275
Msa1208050 AT1G67980.1 56.140 228 94 3 22 247 8 231 6.80e-87 258
Msa1208050 AT1G67990.1 52.137 234 107 3 16 247 2 232 1.34e-79 239
Msa1208050 AT1G24735.1 53.304 227 100 4 24 247 16 239 1.10e-76 232
Msa1208050 AT1G24735.3 53.684 190 84 3 59 247 8 194 2.62e-65 201
Msa1208050 AT1G24735.2 53.684 190 84 3 59 247 104 290 2.67e-64 202
Msa1208050 AT4G34050.2 68.067 119 38 0 130 248 30 148 1.39e-59 185
Msa1208050 AT3G62000.1 40.969 227 104 8 30 246 71 277 5.12e-47 157
Msa1208050 AT1G67980.2 46.988 166 84 2 82 247 2 163 2.11e-46 152
Msa1208050 AT3G61990.1 39.819 221 112 6 30 246 86 289 4.90e-44 150
Msa1208050 AT3G62000.2 40.553 217 99 8 30 236 71 267 2.37e-40 142

Find 54 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGAACACAATGGAAAT+TGG 0.290180 8_1:-65925853 Msa1208050:CDS
CTCTTATTAGGTATTGGCTT+TGG 0.296103 8_1:-65924667 Msa1208050:intron
CACCTATGATGGATTTCATT+AGG 0.322716 8_1:-65924203 Msa1208050:CDS
TGATTGATCTTGTTAAGGTT+GGG 0.361490 8_1:-65924284 Msa1208050:CDS
TTCAAGCAAGGGTGTTCTCT+TGG 0.372126 8_1:+65926563 None:intergenic
CAAGAGATGGCTATCAATAA+TGG 0.384566 8_1:-65927218 None:intergenic
TAGGATACGATAATACCTTA+TGG 0.389410 8_1:-65924254 Msa1208050:CDS
ATGATTGATCTTGTTAAGGT+TGG 0.391503 8_1:-65924285 Msa1208050:CDS
AAGAGAACACCCTTGCTTGA+AGG 0.414633 8_1:-65926561 Msa1208050:CDS
GCCCTTGCTCTTCCATCTGA+TGG 0.437597 8_1:-65925799 Msa1208050:CDS
TGAAGGAGTTCATCAAGAAA+AGG 0.438463 8_1:+65924552 None:intergenic
GAGGATGATTGATCTTGTTA+AGG 0.466309 8_1:-65924289 Msa1208050:CDS
TCCATCTGATGCACCTATGA+TGG 0.468925 8_1:-65924214 Msa1208050:CDS
GAAGCAAACATACATCTTGA+AGG 0.470286 8_1:+65924535 None:intergenic
TTCCTAATGAAATCCATCAT+AGG 0.472967 8_1:+65924201 None:intergenic
GATTGATCTTGTTAAGGTTG+GGG 0.475443 8_1:-65924283 Msa1208050:CDS
TTAGTTGATGCGGCGACATA+AGG 0.477226 8_1:+65924089 None:intergenic
CGCCACTGATCCACTCCATA+AGG 0.479866 8_1:+65924239 None:intergenic
TCATCAAGAAAAGGGAGAGC+AGG 0.480559 8_1:+65924561 None:intergenic
GAGTCGAGAATACTATGAGC+TGG 0.495341 8_1:-65924640 Msa1208050:CDS
TATAAGTTGTCCTTCATCAC+CGG 0.497804 8_1:+65925900 None:intergenic
TTGCTCACAAGATTGACTTT+AGG 0.499180 8_1:-65924590 Msa1208050:CDS
AGCCTTACCTTTCCATCAGA+TGG 0.499930 8_1:+65925787 None:intergenic
CATCACCGGGTATAGCCATA+TGG 0.500442 8_1:+65925914 None:intergenic
GAAGGAGTTCATCAAGAAAA+GGG 0.500517 8_1:+65924553 None:intergenic
AGATGGAAGAGCAAGGGCAG+TGG 0.505752 8_1:+65925804 None:intergenic
TGTCAACTCTCTATAGCTGA+TGG 0.510176 8_1:-65924117 Msa1208050:CDS
ATGGCTATACCCGGTGATGA+AGG 0.518965 8_1:-65925910 Msa1208050:CDS
GATTTGCGTCTCCGATGAGT+TGG 0.538504 8_1:+65927180 None:intergenic
TGCTCTTCCATCTGATGGAA+AGG 0.540500 8_1:-65925794 Msa1208050:intron
TCACGGAGCTCCTTCAAGCA+AGG 0.557059 8_1:+65926551 None:intergenic
GTCAACTCTCTATAGCTGAT+GGG 0.563049 8_1:-65924116 Msa1208050:CDS
ATAAGTTGTCCTTCATCACC+GGG 0.570862 8_1:+65925901 None:intergenic
ATTGATCTTGTTAAGGTTGG+GGG 0.571837 8_1:-65924282 Msa1208050:CDS
CACGGAGCTCCTTCAAGCAA+GGG 0.571847 8_1:+65926552 None:intergenic
CACAAGATTGACTTTAGGCA+AGG 0.576679 8_1:-65924585 Msa1208050:CDS
ATATTGAAACAGGAACCATA+TGG 0.577851 8_1:-65925929 Msa1208050:intron
GATAAAGTGCATCACTCTGA+AGG 0.581770 8_1:+65927141 None:intergenic
TCCATCATAGGTGCATCAGA+TGG 0.582973 8_1:+65924213 None:intergenic
TACGATAATACCTTATGGAG+TGG 0.587648 8_1:-65924249 Msa1208050:CDS
AGGACAACTTATAAGCATGT+TGG 0.591106 8_1:-65925890 Msa1208050:CDS
AGTCGAGAATACTATGAGCT+GGG 0.593435 8_1:-65924639 Msa1208050:CDS
TACCTTATGGAGTGGATCAG+TGG 0.602136 8_1:-65924241 Msa1208050:CDS
TTCCATCAGATGGAAGAGCA+AGG 0.602361 8_1:+65925797 None:intergenic
TCCATCAGATGGAAGAGCAA+GGG 0.613310 8_1:+65925798 None:intergenic
GAACAACAAAACCAACTCAT+CGG 0.626049 8_1:-65927191 Msa1208050:CDS
ATGGAAATTGGTGTGTACAC+TGG 0.640887 8_1:-65925841 Msa1208050:CDS
AAATGAGAGATTAGTTGATG+CGG 0.647761 8_1:+65924079 None:intergenic
TATCAATGCAAAGAACACAA+TGG 0.649047 8_1:-65925860 Msa1208050:CDS
GATGGCTATCAATAATGGAG+AGG 0.655271 8_1:-65927213 Msa1208050:CDS
GATTTCATTAGGAATTTACG+TGG 0.656840 8_1:-65924192 Msa1208050:CDS
AGGAACCATATGGCTATACC+CGG 0.667991 8_1:-65925919 Msa1208050:CDS
ACTACTTAAACTATCACGTG+AGG 0.676055 8_1:-65924308 Msa1208050:CDS
CTTATGGAGTGGATCAGTGG+CGG 0.687276 8_1:-65924238 Msa1208050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTGTTTTTTTATTATA+AGG + chr8_1:65924826-65924845 None:intergenic 10.0%
!! TCAACAAAAAAAAAAAACTT+GGG - chr8_1:65924683-65924702 Msa1208050:intron 15.0%
!! TCTCAAAATAACATATATTT+GGG + chr8_1:65924892-65924911 None:intergenic 15.0%
!! TTCTCAAAATAACATATATT+TGG + chr8_1:65924893-65924912 None:intergenic 15.0%
!!! TATATATTTTTTCATAAGCA+TGG + chr8_1:65925272-65925291 None:intergenic 15.0%
!! AGTGTATAATCTTATAAATA+AGG + chr8_1:65925560-65925579 None:intergenic 15.0%
!!! AACAAAGAAATACTTTTAAA+AGG + chr8_1:65926211-65926230 None:intergenic 15.0%
!!! AATTGATAATGAAATAAAGT+TGG + chr8_1:65926800-65926819 None:intergenic 15.0%
!! GATTAATTATCTAATTGAAT+TGG - chr8_1:65926900-65926919 Msa1208050:intron 15.0%
!!! TTATTTTCCTGTAAAATTAA+TGG + chr8_1:65926929-65926948 None:intergenic 15.0%
!! GATAAATGAGAAAATAATAG+TGG + chr8_1:65924265-65924284 None:intergenic 20.0%
!!! TTTTCTCATTTATCTTGTTT+CGG - chr8_1:65924271-65924290 Msa1208050:CDS 20.0%
!! GTCAACAAAAAAAAAAAACT+TGG - chr8_1:65924682-65924701 Msa1208050:intron 20.0%
!!! ATATTCCCAACAAATATTTT+TGG - chr8_1:65924851-65924870 Msa1208050:intron 20.0%
!! TTGTTCCAAAAATATTTGTT+GGG + chr8_1:65924859-65924878 None:intergenic 20.0%
!! TTTGTTCCAAAAATATTTGT+TGG + chr8_1:65924860-65924879 None:intergenic 20.0%
!!! TTGTTTTCACTTTTTTAAAG+TGG - chr8_1:65924917-65924936 Msa1208050:intron 20.0%
!!! TGTTTTCACTTTTTTAAAGT+GGG - chr8_1:65924918-65924937 Msa1208050:intron 20.0%
!!! ATGAATTTTAGTAATCTCAA+AGG - chr8_1:65925314-65925333 Msa1208050:intron 20.0%
!! ATCAATATGTATATTGAAAC+AGG - chr8_1:65925362-65925381 Msa1208050:intron 20.0%
!!! ATTTTACTTAATTGCAGTTT+TGG - chr8_1:65925638-65925657 Msa1208050:intron 20.0%
!! AAAATTACGCGATTAAAAAT+AGG + chr8_1:65925697-65925716 None:intergenic 20.0%
!!! TATTTTTAATCGCGTAATTT+TGG - chr8_1:65925696-65925715 Msa1208050:intron 20.0%
!! GTTCTTATAATTAGAAATGA+AGG + chr8_1:65926161-65926180 None:intergenic 20.0%
!!! ATTTTACAGGAAAATAACAA+AGG - chr8_1:65926932-65926951 Msa1208050:intron 20.0%
!!! TTTTACAGGAAAATAACAAA+GGG - chr8_1:65926933-65926952 Msa1208050:intron 20.0%
! AATAGATGACTAGATAATTG+TGG + chr8_1:65924192-65924211 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG - chr8_1:65924329-65924348 Msa1208050:CDS 25.0%
! GTGTAATAATCAAACATAAG+AGG + chr8_1:65924455-65924474 None:intergenic 25.0%
! TCAACAAAGTTGTCATTAAA+TGG + chr8_1:65924504-65924523 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr8_1:65924542-65924561 Msa1208050:intron 25.0%
!!! AACCACTTTTTGATAACTTT+TGG + chr8_1:65924627-65924646 None:intergenic 25.0%
! GAATTCAAGTATATACTACT+TGG + chr8_1:65925219-65925238 None:intergenic 25.0%
! GAATTCTTTGCTAATTTGAT+AGG - chr8_1:65925233-65925252 Msa1208050:intron 25.0%
!!! TAATCTCAAAGGTTTAGTTT+TGG - chr8_1:65925325-65925344 Msa1208050:intron 25.0%
! ATAAGGATAGATGAGTAATA+AGG + chr8_1:65925543-65925562 None:intergenic 25.0%
! AAATATGAAGACCATAATTG+TGG - chr8_1:65925999-65926018 Msa1208050:intron 25.0%
!! TTTTGACAAAACCACAATTA+TGG + chr8_1:65926013-65926032 None:intergenic 25.0%
AATAAGAAGTGAGAAAACCA+AGG + chr8_1:65924530-65924549 None:intergenic 30.0%
!! TTGGTTTTCTCACTTCTTAT+TGG - chr8_1:65924529-65924548 Msa1208050:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr8_1:65924555-65924574 Msa1208050:CDS 30.0%
GTCCAAAAGTTATCAAAAAG+TGG - chr8_1:65924622-65924641 Msa1208050:CDS 30.0%
TTGACAAAGCACAATATAAG+TGG + chr8_1:65924667-65924686 None:intergenic 30.0%
!!! TTTCACTTTTTTAAAGTGGG+TGG - chr8_1:65924921-65924940 Msa1208050:intron 30.0%
ATATTGAAACAGGAACCATA+TGG - chr8_1:65925372-65925391 Msa1208050:intron 30.0%
TATCAATGCAAAGAACACAA+TGG - chr8_1:65925441-65925460 Msa1208050:intron 30.0%
GTTGCGGTTCTATTTAAATA+AGG + chr8_1:65925666-65925685 None:intergenic 30.0%
ATTTAAATAGAACCGCAACT+TGG - chr8_1:65925667-65925686 Msa1208050:intron 30.0%
ATTACGCGATTAAAAATAGG+AGG + chr8_1:65925694-65925713 None:intergenic 30.0%
! AGTCAACGAATTTGAAATGA+GGG + chr8_1:65925723-65925742 None:intergenic 30.0%
! TAGTCAACGAATTTGAAATG+AGG + chr8_1:65925724-65925743 None:intergenic 30.0%
!! AACCATCTAATTTGATGATG+TGG + chr8_1:65925923-65925942 None:intergenic 30.0%
!!! TATTTCGAGTTGCTCAATTT+TGG + chr8_1:65925984-65926003 None:intergenic 30.0%
! TACCAATATTGAACGTTTTC+CGG + chr8_1:65926376-65926395 None:intergenic 30.0%
ATCATTGTCTCTCTCTTATT+AGG - chr8_1:65926622-65926641 Msa1208050:intron 30.0%
ATGCATGGATGAAATCAAAT+TGG + chr8_1:65926847-65926866 None:intergenic 30.0%
!! TTGGTGTCCATTAATTTTAC+AGG - chr8_1:65926919-65926938 Msa1208050:intron 30.0%
ATGATTGATCTTGTTAAGGT+TGG - chr8_1:65927016-65927035 Msa1208050:intron 30.0%
TGATTGATCTTGTTAAGGTT+GGG - chr8_1:65927017-65927036 Msa1208050:intron 30.0%
TAGGATACGATAATACCTTA+TGG - chr8_1:65927047-65927066 Msa1208050:intron 30.0%
TTCCTAATGAAATCCATCAT+AGG + chr8_1:65927103-65927122 None:intergenic 30.0%
GATTTCATTAGGAATTTACG+TGG - chr8_1:65927109-65927128 Msa1208050:intron 30.0%
GAACAACAAAACCAACTCAT+CGG - chr8_1:65924110-65924129 Msa1208050:CDS 35.0%
TATAAGTTGTCCTTCATCAC+CGG + chr8_1:65925404-65925423 None:intergenic 35.0%
AGGACAACTTATAAGCATGT+TGG - chr8_1:65925411-65925430 Msa1208050:intron 35.0%
GCAAAGAACACAATGGAAAT+TGG - chr8_1:65925448-65925467 Msa1208050:intron 35.0%
AGGATAGATGAGTAATAAGG+TGG + chr8_1:65925540-65925559 None:intergenic 35.0%
TGACATGACTTGAAAACGAA+TGG + chr8_1:65925888-65925907 None:intergenic 35.0%
TGCCACATCATCAAATTAGA+TGG - chr8_1:65925918-65925937 Msa1208050:CDS 35.0%
!!! TGTGGTTTTGTCAAAAGATG+TGG - chr8_1:65926017-65926036 Msa1208050:intron 35.0%
GGAAATGTTTGATGCTTCTT+GGG - chr8_1:65926471-65926490 Msa1208050:intron 35.0%
GAAATGTTTGATGCTTCTTG+GGG - chr8_1:65926472-65926491 Msa1208050:intron 35.0%
TATCTACTCGACAATTCATC+CGG + chr8_1:65926521-65926540 None:intergenic 35.0%
GTCTCTCTCTTATTAGGTAT+TGG - chr8_1:65926628-65926647 Msa1208050:intron 35.0%
!! CTCTTATTAGGTATTGGCTT+TGG - chr8_1:65926634-65926653 Msa1208050:intron 35.0%
! TTGCTCACAAGATTGACTTT+AGG - chr8_1:65926711-65926730 Msa1208050:intron 35.0%
GAAGGAGTTCATCAAGAAAA+GGG + chr8_1:65926751-65926770 None:intergenic 35.0%
TGAAGGAGTTCATCAAGAAA+AGG + chr8_1:65926752-65926771 None:intergenic 35.0%
GAAGCAAACATACATCTTGA+AGG + chr8_1:65926769-65926788 None:intergenic 35.0%
!!! GACGTTTGACTTTGTTTTTG+TGG - chr8_1:65926955-65926974 Msa1208050:intron 35.0%
ACTACTTAAACTATCACGTG+AGG - chr8_1:65926993-65927012 Msa1208050:intron 35.0%
GAGGATGATTGATCTTGTTA+AGG - chr8_1:65927012-65927031 Msa1208050:intron 35.0%
GATTGATCTTGTTAAGGTTG+GGG - chr8_1:65927018-65927037 Msa1208050:intron 35.0%
ATTGATCTTGTTAAGGTTGG+GGG - chr8_1:65927019-65927038 Msa1208050:intron 35.0%
TACGATAATACCTTATGGAG+TGG - chr8_1:65927052-65927071 Msa1208050:intron 35.0%
!! CACCTATGATGGATTTCATT+AGG - chr8_1:65927098-65927117 Msa1208050:intron 35.0%
GATAAAGTGCATCACTCTGA+AGG + chr8_1:65924163-65924182 None:intergenic 40.0%
GACAACTTTGTTGACAACCT+TGG - chr8_1:65924510-65924529 Msa1208050:intron 40.0%
! GGTGTTTTTCTGTCATCTCA+CGG + chr8_1:65924770-65924789 None:intergenic 40.0%
AGATGACAGAAAAACACCCT+CGG - chr8_1:65924772-65924791 Msa1208050:intron 40.0%
ACAACGTATGATCTTACCGA+GGG + chr8_1:65924791-65924810 None:intergenic 40.0%
AACAACGTATGATCTTACCG+AGG + chr8_1:65924792-65924811 None:intergenic 40.0%
!!! CTTTTTTAAAGTGGGTGGAG+TGG - chr8_1:65924926-65924945 Msa1208050:intron 40.0%
ATAAGTTGTCCTTCATCACC+GGG + chr8_1:65925403-65925422 None:intergenic 40.0%
ATGGAAATTGGTGTGTACAC+TGG - chr8_1:65925460-65925479 Msa1208050:intron 40.0%
TTCCATCTGATGGAAAGGTA+AGG - chr8_1:65925512-65925531 Msa1208050:intron 40.0%
AAAATAGGAGGACCAAGTTG+CGG + chr8_1:65925682-65925701 None:intergenic 40.0%
!! ACTAAAAGCATCTCCAAAGC+CGG - chr8_1:65926354-65926373 Msa1208050:intron 40.0%
! TATTGAACGTTTTCCGGCTT+TGG + chr8_1:65926370-65926389 None:intergenic 40.0%
AGCCGGAAAACGTTCAATAT+TGG - chr8_1:65926371-65926390 Msa1208050:intron 40.0%
CGGAAATGTTTGATGCTTCT+TGG - chr8_1:65926470-65926489 Msa1208050:intron 40.0%
TCGAGTAGATAGATCAGATC+CGG - chr8_1:65926530-65926549 Msa1208050:CDS 40.0%
AGTCGAGAATACTATGAGCT+GGG - chr8_1:65926662-65926681 Msa1208050:intron 40.0%
ACTGCCCATGATTGAAAAAG+CGG - chr8_1:65926685-65926704 Msa1208050:intron 40.0%
!!! ACTCCCGCTTTTTCAATCAT+GGG + chr8_1:65926692-65926711 None:intergenic 40.0%
!!! AACTCCCGCTTTTTCAATCA+TGG + chr8_1:65926693-65926712 None:intergenic 40.0%
! CACAAGATTGACTTTAGGCA+AGG - chr8_1:65926716-65926735 Msa1208050:intron 40.0%
CTAAGTTTGCGAAACATGCA+TGG + chr8_1:65926862-65926881 None:intergenic 40.0%
TGTCAACTCTCTATAGCTGA+TGG - chr8_1:65927184-65927203 Msa1208050:CDS 40.0%
GTCAACTCTCTATAGCTGAT+GGG - chr8_1:65927185-65927204 Msa1208050:CDS 40.0%
!! TTCAAGCAAGGGTGTTCTCT+TGG + chr8_1:65924741-65924760 None:intergenic 45.0%
AAGAGAACACCCTTGCTTGA+AGG - chr8_1:65924740-65924759 Msa1208050:intron 45.0%
AGGAACCATATGGCTATACC+CGG - chr8_1:65925382-65925401 Msa1208050:intron 45.0%
TCCATCAGATGGAAGAGCAA+GGG + chr8_1:65925506-65925525 None:intergenic 45.0%
TTCCATCAGATGGAAGAGCA+AGG + chr8_1:65925507-65925526 None:intergenic 45.0%
TGCTCTTCCATCTGATGGAA+AGG - chr8_1:65925507-65925526 Msa1208050:intron 45.0%
AGCCTTACCTTTCCATCAGA+TGG + chr8_1:65925517-65925536 None:intergenic 45.0%
GATGAGCGAGAATGAGAGTA+GGG + chr8_1:65926451-65926470 None:intergenic 45.0%
CTACTCTCATTCTCGCTCAT+CGG - chr8_1:65926450-65926469 Msa1208050:intron 45.0%
GAGTCGAGAATACTATGAGC+TGG - chr8_1:65926661-65926680 Msa1208050:intron 45.0%
CTGCCCATGATTGAAAAAGC+GGG - chr8_1:65926686-65926705 Msa1208050:intron 45.0%
TCATCAAGAAAAGGGAGAGC+AGG + chr8_1:65926743-65926762 None:intergenic 45.0%
GTTAAGGTTGGGGGACTAAT+AGG - chr8_1:65927028-65927047 Msa1208050:intron 45.0%
TACCTTATGGAGTGGATCAG+TGG - chr8_1:65927060-65927079 Msa1208050:intron 45.0%
TCCATCTGATGCACCTATGA+TGG - chr8_1:65927087-65927106 Msa1208050:intron 45.0%
TCCATCATAGGTGCATCAGA+TGG + chr8_1:65927091-65927110 None:intergenic 45.0%
! TTAGTTGATGCGGCGACATA+AGG + chr8_1:65927215-65927234 None:intergenic 45.0%
!!! AATAATAATTTTACATAAAT+TGG + chr8_1:65925621-65925640 None:intergenic 5.0%
GATTTGCGTCTCCGATGAGT+TGG + chr8_1:65924124-65924143 None:intergenic 50.0%
CATCACCGGGTATAGCCATA+TGG + chr8_1:65925390-65925409 None:intergenic 50.0%
ATGGCTATACCCGGTGATGA+AGG - chr8_1:65925391-65925410 Msa1208050:intron 50.0%
AGGAGAAACGGGTGAAGTTG+GGG + chr8_1:65926426-65926445 None:intergenic 50.0%
CAGGAGAAACGGGTGAAGTT+GGG + chr8_1:65926427-65926446 None:intergenic 50.0%
ACAGGAGAAACGGGTGAAGT+TGG + chr8_1:65926428-65926447 None:intergenic 50.0%
AGAGTAGGGACAGGAGAAAC+GGG + chr8_1:65926437-65926456 None:intergenic 50.0%
GAGAGTAGGGACAGGAGAAA+CGG + chr8_1:65926438-65926457 None:intergenic 50.0%
CGATGAGCGAGAATGAGAGT+AGG + chr8_1:65926452-65926471 None:intergenic 50.0%
GATGCTTCTTGGGGCTTCTT+TGG - chr8_1:65926481-65926500 Msa1208050:intron 50.0%
TTTGGCGAACGTGAAGTCAC+CGG - chr8_1:65926499-65926518 Msa1208050:intron 50.0%
AGATAGATCAGATCCGGACG+CGG - chr8_1:65926536-65926555 Msa1208050:CDS 50.0%
CTTATGGAGTGGATCAGTGG+CGG - chr8_1:65927063-65927082 Msa1208050:intron 50.0%
CACGGAGCTCCTTCAAGCAA+GGG + chr8_1:65924752-65924771 None:intergenic 55.0%
TCACGGAGCTCCTTCAAGCA+AGG + chr8_1:65924753-65924772 None:intergenic 55.0%
AGATGGAAGAGCAAGGGCAG+TGG + chr8_1:65925500-65925519 None:intergenic 55.0%
GCCCTTGCTCTTCCATCTGA+TGG - chr8_1:65925502-65925521 Msa1208050:intron 55.0%
ACGGGTGAAGTTGGGGCTTA+TGG + chr8_1:65926419-65926438 None:intergenic 55.0%
GCGAGAATGAGAGTAGGGAC+AGG + chr8_1:65926446-65926465 None:intergenic 55.0%
CGCCACTGATCCACTCCATA+AGG + chr8_1:65927065-65927084 None:intergenic 55.0%
GCTGTTGCTCCGCGGTGATA+CGG - chr8_1:65926558-65926577 Msa1208050:CDS 60.0%
AAAACATCTCCTGCCCCCGC+AGG + chr8_1:65926585-65926604 None:intergenic 60.0%
TCCGCGGTGATACGGACCTG+CGG - chr8_1:65926566-65926585 Msa1208050:CDS 65.0%
CCCGCAGGTCCGTATCACCG+CGG + chr8_1:65926570-65926589 None:intergenic 70.0%
CCGCGGTGATACGGACCTGC+GGG - chr8_1:65926567-65926586 Msa1208050:CDS 70.0%
CGCGGTGATACGGACCTGCG+GGG - chr8_1:65926568-65926587 Msa1208050:CDS 70.0%
GCGGTGATACGGACCTGCGG+GGG - chr8_1:65926569-65926588 Msa1208050:CDS 70.0%
TGATACGGACCTGCGGGGGC+AGG - chr8_1:65926573-65926592 Msa1208050:CDS 70.0%
CGCGGAGCAACAGCCGCGTC+CGG + chr8_1:65926552-65926571 None:intergenic 75.0%
CGGACGCGGCTGTTGCTCCG+CGG - chr8_1:65926550-65926569 Msa1208050:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 65924089 65927234 65924089 ID=Msa1208050;Name=Msa1208050
chr8_1 mRNA 65924089 65927234 65924089 ID=Msa1208050-mRNA-1;Parent=Msa1208050;Name=Msa1208050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|5|0|248
chr8_1 exon 65927139 65927234 65927139 ID=Msa1208050-mRNA-1:exon:21675;Parent=Msa1208050-mRNA-1
chr8_1 exon 65926530 65926609 65926530 ID=Msa1208050-mRNA-1:exon:21674;Parent=Msa1208050-mRNA-1
chr8_1 exon 65925795 65925939 65925795 ID=Msa1208050-mRNA-1:exon:21673;Parent=Msa1208050-mRNA-1
chr8_1 exon 65924548 65924679 65924548 ID=Msa1208050-mRNA-1:exon:21672;Parent=Msa1208050-mRNA-1
chr8_1 exon 65924089 65924382 65924089 ID=Msa1208050-mRNA-1:exon:21671;Parent=Msa1208050-mRNA-1
chr8_1 CDS 65927139 65927234 65927139 ID=Msa1208050-mRNA-1:cds;Parent=Msa1208050-mRNA-1
chr8_1 CDS 65926530 65926609 65926530 ID=Msa1208050-mRNA-1:cds;Parent=Msa1208050-mRNA-1
chr8_1 CDS 65925795 65925939 65925795 ID=Msa1208050-mRNA-1:cds;Parent=Msa1208050-mRNA-1
chr8_1 CDS 65924548 65924679 65924548 ID=Msa1208050-mRNA-1:cds;Parent=Msa1208050-mRNA-1
chr8_1 CDS 65924089 65924382 65924089 ID=Msa1208050-mRNA-1:cds;Parent=Msa1208050-mRNA-1
Gene Sequence

>Msa1208050

ATGGCTATCAATAATGGAGAGGAACAACAAAACCAACTCATCGGAGACGCAAATCTTGCTCACAAGACTCTCCTTCAGAGTGATGCACTTTATCAATATATACTTGAAACAAGTGTGTTTCCAAGAGAACACCCTTGCTTGAAGGAGCTCCGTGAGATGACAGAAAAACACCCTCGGAACCATATGGCTATACCCGGTGATGAAGGACAACTTATAAGCATGTTGGTTAAGCTTATCAATGCAAAGAACACAATGGAAATTGGTGTGTACACTGGTTACTCTCTACTCTCCACTGCCCTTGCTCTTCCATCTGATGGAAAGGTATTGGCTTTGGATCTGAGTCGAGAATACTATGAGCTGGGACTGCCCATGATTGAAAAAGCGGGAGTTGCTCACAAGATTGACTTTAGGCAAGGACCTGCTCTCCCTTTTCTTGATGAACTCCTTCAAGATGAAAATAACAAAGGGACGTTTGACTTTGTTTTTGTGGATGCTGATAAGAATAACTACTTAAACTATCACGTGAGGATGATTGATCTTGTTAAGGTTGGGGGACTAATAGGATACGATAATACCTTATGGAGTGGATCAGTGGCGGTTCCATCTGATGCACCTATGATGGATTTCATTAGGAATTTACGTGGTTATGTGATTGAGTTCAACAAACATCTAGCTCAAGATTCAAGAATTGAGATTTGTCAACTCTCTATAGCTGATGGGATTACCTTATGTCGCCGCATCAACTAA

Protein sequence

>Msa1208050

MAINNGEEQQNQLIGDANLAHKTLLQSDALYQYILETSVFPREHPCLKELREMTEKHPRNHMAIPGDEGQLISMLVKLINAKNTMEIGVYTGYSLLSTALALPSDGKVLALDLSREYYELGLPMIEKAGVAHKIDFRQGPALPFLDELLQDENNKGTFDFVFVDADKNNYLNYHVRMIDLVKVGGLIGYDNTLWSGSVAVPSDAPMMDFIRNLRGYVIEFNKHLAQDSRIEICQLSIADGITLCRRIN*