Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922330 | XP_019437634.1 | 35.185 | 486 | 281 | 7 | 69 | 525 | 11 | 491 | 3.09e-102 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017070 | Msa0922330 | 0.830302 | 3.170057e-55 | -8.615850e-47 |
| Msa0017510 | Msa0922330 | 0.832380 | 9.771278e-56 | -8.615850e-47 |
| Msa0039330 | Msa0922330 | 0.813752 | 2.183583e-51 | -8.615850e-47 |
| Msa0096450 | Msa0922330 | 0.801980 | 6.970953e-49 | -8.615850e-47 |
| Msa0101810 | Msa0922330 | -0.817422 | 3.325402e-52 | -8.615850e-47 |
| Msa0657970 | Msa0922330 | 0.808239 | 3.415356e-50 | -8.615850e-47 |
| Msa0658570 | Msa0922330 | 0.800825 | 1.201578e-48 | -8.615850e-47 |
| Msa0724210 | Msa0922330 | 0.802897 | 4.510435e-49 | -8.615850e-47 |
| Msa0731940 | Msa0922330 | 0.800554 | 1.364580e-48 | -8.615850e-47 |
| Msa0735170 | Msa0922330 | 0.810285 | 1.243430e-50 | -8.615850e-47 |
| Msa0753720 | Msa0922330 | 0.802515 | 5.407819e-49 | -8.615850e-47 |
| Msa0760130 | Msa0922330 | 0.805093 | 1.576818e-49 | -8.615850e-47 |
| Msa0766630 | Msa0922330 | 0.825722 | 4.015479e-54 | -8.615850e-47 |
| Msa0806090 | Msa0922330 | 0.811920 | 5.499750e-51 | -8.615850e-47 |
| Msa0157290 | Msa0922330 | 0.831949 | 1.249242e-55 | -8.615850e-47 |
| Msa0157310 | Msa0922330 | 0.807402 | 5.144606e-50 | -8.615850e-47 |
| Msa0178930 | Msa0922330 | 0.815319 | 9.823264e-52 | -8.615850e-47 |
| Msa0188830 | Msa0922330 | 0.806311 | 8.748814e-50 | -8.615850e-47 |
| Msa0212990 | Msa0922330 | 0.808427 | 3.113592e-50 | -8.615850e-47 |
| Msa0215320 | Msa0922330 | -0.833555 | 4.987610e-56 | -8.615850e-47 |
| Msa0220580 | Msa0922330 | 0.806491 | 8.015870e-50 | -8.615850e-47 |
| Msa0373330 | Msa0922330 | 0.804287 | 2.322762e-49 | -8.615850e-47 |
| Msa0376590 | Msa0922330 | 0.805445 | 1.330171e-49 | -8.615850e-47 |
| Msa0389320 | Msa0922330 | 0.814165 | 1.770464e-51 | -8.615850e-47 |
| Msa0402290 | Msa0922330 | 0.810286 | 1.242776e-50 | -8.615850e-47 |
| Msa0417080 | Msa0922330 | 0.807805 | 4.225218e-50 | -8.615850e-47 |
| Msa0430420 | Msa0922330 | 0.814242 | 1.701874e-51 | -8.615850e-47 |
| Msa0437990 | Msa0922330 | 0.814994 | 1.160172e-51 | -8.615850e-47 |
| Msa0440750 | Msa0922330 | 0.808495 | 3.011117e-50 | -8.615850e-47 |
| Msa0466120 | Msa0922330 | 0.802635 | 5.109654e-49 | -8.615850e-47 |
| Msa0466390 | Msa0922330 | 0.801328 | 9.485573e-49 | -8.615850e-47 |
| Msa0243100 | Msa0922330 | 0.811559 | 6.590471e-51 | -8.615850e-47 |
| Msa0243710 | Msa0922330 | 0.819346 | 1.219010e-52 | -8.615850e-47 |
| Msa0288100 | Msa0922330 | 0.804292 | 2.317394e-49 | -8.615850e-47 |
| Msa0294590 | Msa0922330 | 0.810266 | 1.255461e-50 | -8.615850e-47 |
| Msa0344980 | Msa0922330 | 0.801974 | 6.990368e-49 | -8.615850e-47 |
| Msa0345970 | Msa0922330 | 0.812947 | 3.279646e-51 | -8.615850e-47 |
| Msa0354800 | Msa0922330 | -0.815130 | 1.082398e-51 | -8.615850e-47 |
| Msa0355220 | Msa0922330 | 0.806606 | 7.579498e-50 | -8.615850e-47 |
| Msa0484780 | Msa0922330 | 0.809171 | 2.158624e-50 | -8.615850e-47 |
| Msa0512900 | Msa0922330 | 0.825424 | 4.722712e-54 | -8.615850e-47 |
| Msa0532170 | Msa0922330 | 0.802510 | 5.422332e-49 | -8.615850e-47 |
| Msa0532350 | Msa0922330 | 0.817489 | 3.212092e-52 | -8.615850e-47 |
| Msa0536220 | Msa0922330 | 0.839325 | 1.695538e-57 | -8.615850e-47 |
| Msa0558690 | Msa0922330 | 0.800429 | 1.447115e-48 | -8.615850e-47 |
| Msa0575700 | Msa0922330 | 0.806195 | 9.255657e-50 | -8.615850e-47 |
| Msa0590840 | Msa0922330 | 0.800189 | 1.619370e-48 | -8.615850e-47 |
| Msa0870530 | Msa0922330 | 0.815884 | 7.352444e-52 | -8.615850e-47 |
| Msa0880140 | Msa0922330 | 0.829989 | 3.780428e-55 | -8.615850e-47 |
| Msa0885280 | Msa0922330 | 0.805865 | 1.086152e-49 | -8.615850e-47 |
| Msa0907070 | Msa0922330 | 0.815170 | 1.060596e-51 | -8.615850e-47 |
| Msa0922320 | Msa0922330 | 0.804798 | 1.816726e-49 | -8.615850e-47 |
| Msa0922330 | Msa0923540 | 0.828256 | 9.945185e-55 | -8.615850e-47 |
| Msa0922330 | Msa0926890 | 0.800178 | 1.627909e-48 | -8.615850e-47 |
| Msa0922330 | Msa0942200 | 0.865199 | 7.019555e-65 | -8.615850e-47 |
| Msa0922330 | Msa0947660 | 0.810217 | 1.286197e-50 | -8.615850e-47 |
| Msa0922330 | Msa0969520 | 0.832076 | 1.161835e-55 | -8.615850e-47 |
| Msa0922330 | Msa1014540 | 0.818079 | 2.362850e-52 | -8.615850e-47 |
| Msa0922330 | Msa1044420 | 0.818626 | 1.776769e-52 | -8.615850e-47 |
| Msa0922330 | Msa1075220 | -0.833030 | 6.740579e-56 | -8.615850e-47 |
| Msa0922330 | Msa1079180 | 0.816096 | 6.595851e-52 | -8.615850e-47 |
| Msa0922330 | Msa1082500 | 0.815397 | 9.441823e-52 | -8.615850e-47 |
| Msa0922330 | Msa1082580 | 0.801717 | 7.894031e-49 | -8.615850e-47 |
| Msa0922330 | Msa1085300 | 0.801645 | 8.165103e-49 | -8.615850e-47 |
| Msa0922330 | Msa1116130 | -0.813382 | 2.633563e-51 | -8.615850e-47 |
| Msa0922330 | Msa1139000 | -0.821701 | 3.509623e-53 | -8.615850e-47 |
| Msa0922330 | Msa1162550 | -0.844069 | 9.496796e-59 | -8.615850e-47 |
| Msa0922330 | Msa1169090 | 0.801828 | 7.489603e-49 | -8.615850e-47 |
| Msa0922330 | Msa1186060 | 0.802448 | 5.582933e-49 | -8.615850e-47 |
| Msa0922330 | Msa1228590 | 0.827502 | 1.510454e-54 | -8.615850e-47 |
| Msa0922330 | Msa1283860 | 0.811055 | 8.476509e-51 | -8.615850e-47 |
| Msa0922330 | Msa1284680 | 0.814656 | 1.379000e-51 | -8.615850e-47 |
| Msa0922330 | Msa1322890 | 0.812422 | 4.272942e-51 | -8.615850e-47 |
| Msa0922330 | Msa1327050 | 0.802438 | 5.610143e-49 | -8.615850e-47 |
| Msa0922330 | Msa1372760 | 0.803488 | 3.403114e-49 | -8.615850e-47 |
| Msa0922330 | Msa1384330 | 0.807142 | 5.839784e-50 | -8.615850e-47 |
| Msa0922330 | Msa1392260 | 0.812271 | 4.610208e-51 | -8.615850e-47 |
| Msa0922330 | Msa1429900 | 0.804053 | 2.597973e-49 | -8.615850e-47 |
| Msa0922330 | Msa1451570 | 0.808712 | 2.707117e-50 | -8.615850e-47 |
| Msa0922330 | Msa1451620 | -0.805085 | 1.582860e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922330 | MtrunA17_Chr1g0167871 | 32.990 | 485 | 275 | 7 | 68 | 515 | 213 | 684 | 1.17e-74 | 251 |
| Msa0922330 | MtrunA17_Chr4g0044661 | 30.426 | 493 | 291 | 9 | 67 | 541 | 13 | 471 | 3.29e-74 | 244 |
| Msa0922330 | MtrunA17_Chr2g0304851 | 30.707 | 368 | 213 | 4 | 71 | 415 | 15 | 363 | 3.05e-53 | 186 |
| Msa0922330 | MtrunA17_Chr5g0421991 | 36.719 | 256 | 155 | 3 | 298 | 546 | 12 | 267 | 2.45e-43 | 156 |
| Msa0922330 | MtrunA17_Chr1g0171051 | 34.034 | 238 | 119 | 6 | 67 | 269 | 55 | 289 | 4.26e-36 | 138 |
| Msa0922330 | MtrunA17_Chr7g0231491 | 35.821 | 201 | 126 | 2 | 66 | 264 | 40 | 239 | 1.73e-35 | 134 |
| Msa0922330 | MtrunA17_Chr8g0347361 | 35.593 | 177 | 107 | 2 | 48 | 224 | 4 | 173 | 1.28e-33 | 127 |
| Msa0922330 | MtrunA17_Chr5g0393531 | 33.838 | 198 | 122 | 3 | 68 | 265 | 8 | 196 | 1.76e-32 | 124 |
| Msa0922330 | MtrunA17_Chr7g0223511 | 35.227 | 176 | 107 | 2 | 42 | 217 | 11 | 179 | 3.64e-32 | 124 |
| Msa0922330 | MtrunA17_Chr5g0393521 | 33.333 | 225 | 141 | 3 | 298 | 515 | 15 | 237 | 1.57e-29 | 118 |
| Msa0922330 | MtrunA17_Chr5g0417421 | 27.832 | 309 | 158 | 6 | 179 | 480 | 21 | 271 | 1.33e-28 | 115 |
| Msa0922330 | MtrunA17_Chr5g0420451 | 31.633 | 196 | 122 | 2 | 70 | 265 | 11 | 194 | 1.48e-28 | 113 |
| Msa0922330 | MtrunA17_Chr6g0481111 | 36.923 | 130 | 80 | 2 | 68 | 196 | 8 | 136 | 4.67e-22 | 92.4 |
| Msa0922330 | MtrunA17_Chr1g0172341 | 42.308 | 104 | 59 | 1 | 70 | 173 | 12 | 114 | 2.10e-21 | 89.7 |
| Msa0922330 | MtrunA17_Chr6g0462951 | 37.398 | 123 | 74 | 2 | 143 | 263 | 2 | 123 | 1.14e-20 | 88.6 |
| Msa0922330 | MtrunA17_Chr5g0393801 | 44.086 | 93 | 51 | 1 | 70 | 162 | 10 | 101 | 2.18e-20 | 86.7 |
| Msa0922330 | MtrunA17_Chr1g0206481 | 27.897 | 233 | 157 | 6 | 79 | 304 | 19 | 247 | 5.01e-20 | 90.9 |
| Msa0922330 | MtrunA17_Chr5g0411141 | 26.141 | 241 | 163 | 7 | 71 | 302 | 12 | 246 | 7.99e-18 | 84.7 |
| Msa0922330 | MtrunA17_Chr2g0278111 | 26.141 | 241 | 163 | 7 | 71 | 302 | 11 | 245 | 8.81e-18 | 84.7 |
| Msa0922330 | MtrunA17_Chr5g0423441 | 25.498 | 251 | 172 | 7 | 71 | 312 | 11 | 255 | 9.94e-18 | 83.2 |
| Msa0922330 | MtrunA17_Chr4g0026601 | 32.051 | 156 | 98 | 3 | 80 | 233 | 33 | 182 | 1.09e-17 | 81.3 |
| Msa0922330 | MtrunA17_Chr1g0148611 | 33.758 | 157 | 95 | 5 | 112 | 262 | 4 | 157 | 7.34e-17 | 78.2 |
| Msa0922330 | MtrunA17_Chr8g0363071 | 32.075 | 159 | 98 | 5 | 111 | 262 | 3 | 158 | 7.39e-16 | 75.5 |
| Msa0922330 | MtrunA17_Chr7g0234461 | 34.066 | 91 | 60 | 0 | 101 | 191 | 1 | 91 | 1.13e-13 | 67.4 |
| Msa0922330 | MtrunA17_Chr2g0280031 | 26.293 | 232 | 149 | 7 | 82 | 296 | 3 | 229 | 1.80e-13 | 70.9 |
| Msa0922330 | MtrunA17_Chr5g0421841 | 25.248 | 202 | 131 | 5 | 71 | 260 | 11 | 204 | 1.57e-12 | 67.0 |
| Msa0922330 | MtrunA17_Chr4g0022201 | 34.409 | 93 | 61 | 0 | 53 | 145 | 68 | 160 | 1.09e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922330 | AT1G52950.1 | 20.000 | 375 | 263 | 9 | 68 | 410 | 10 | 379 | 5.89e-13 | 72.0 |
Find 105 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATGATCTTCAGTTTA+AGG | 0.121188 | 6_2:+60585887 | Msa0922330:CDS |
| AAGAGAATCATATGCAATTT+TGG | 0.149359 | 6_2:-60587548 | None:intergenic |
| TAAAACAAATTACATGTTTC+AGG | 0.168129 | 6_2:-60586707 | None:intergenic |
| TGAATTTAACTATGGTATTC+AGG | 0.222386 | 6_2:+60587338 | Msa0922330:CDS |
| TCAAAATTTGTGTTCTTTGA+TGG | 0.222624 | 6_2:+60587101 | Msa0922330:CDS |
| ATCTTGATTGGTAATGATTC+TGG | 0.224355 | 6_2:-60586592 | None:intergenic |
| GGAAGAAGGAACCAAATAAT+TGG | 0.224918 | 6_2:+60588110 | Msa0922330:exon |
| CTTTCTTATAACTATTTGTT+TGG | 0.227343 | 6_2:-60586182 | None:intergenic |
| TCTTTCTCTTCCCAATTATT+TGG | 0.229859 | 6_2:-60588121 | None:intergenic |
| CGGATTTGAGGTGTTGATTA+TGG | 0.240268 | 6_2:-60585026 | None:intergenic |
| AGAAGAGAAAGACGACAAAT+TGG | 0.259503 | 6_2:+60588088 | Msa0922330:CDS |
| ATTATATCATGATAGGTATA+AGG | 0.287306 | 6_2:+60587046 | Msa0922330:intron |
| GGAGTTTGCACCCAACTCTT+TGG | 0.294000 | 6_2:+60587122 | Msa0922330:CDS |
| ATTTGATGCAGATGACATTC+TGG | 0.303637 | 6_2:-60584957 | None:intergenic |
| TTTCAGTGTGCCTCCGTAAT+AGG | 0.307375 | 6_2:+60586032 | Msa0922330:CDS |
| CTAACAAGGTGGTTACTAAA+AGG | 0.310586 | 6_2:+60586832 | Msa0922330:CDS |
| GGTCAACTAAAGTGTGAAAA+TGG | 0.334869 | 6_2:+60586912 | Msa0922330:CDS |
| GATTTCTTGTAAATCTTGAT+TGG | 0.336200 | 6_2:-60586604 | None:intergenic |
| ATGTTACATGTGCACCAAAA+AGG | 0.343950 | 6_2:+60586875 | Msa0922330:CDS |
| CGAATACAAATCCTGCAAAA+AGG | 0.344536 | 6_2:+60587726 | Msa0922330:CDS |
| AAAGCTGTTGAATTTAACTA+TGG | 0.346330 | 6_2:+60587330 | Msa0922330:CDS |
| TCTGTTGTCTTAGATATCAT+TGG | 0.353003 | 6_2:+60586135 | Msa0922330:intron |
| AAAATAAATATAAGTTGCTT+TGG | 0.354493 | 6_2:+60585916 | Msa0922330:CDS |
| AGCAAATTTCCAAGTTTCCT+TGG | 0.365495 | 6_2:-60585609 | None:intergenic |
| CATAATCAACACCTCAAATC+CGG | 0.386248 | 6_2:+60585027 | Msa0922330:CDS |
| AAATAAATTATACCAGTTGC+AGG | 0.388957 | 6_2:-60586443 | None:intergenic |
| TTCCTAATAATGAAAACAAA+AGG | 0.390279 | 6_2:-60586407 | None:intergenic |
| TTTCTTATAACTATTTGTTT+GGG | 0.392383 | 6_2:-60586181 | None:intergenic |
| CTACTGAATATGTCTCTTCC+TGG | 0.399491 | 6_2:+60585811 | Msa0922330:CDS |
| CTATGGTATTCAGGGTGAAA+TGG | 0.399785 | 6_2:+60587347 | Msa0922330:CDS |
| TTTGTATTCGAACCGTTCTC+TGG | 0.409572 | 6_2:-60587713 | None:intergenic |
| TATACCAGTTGCAGGTTCAA+TGG | 0.415328 | 6_2:-60586435 | None:intergenic |
| GTTTCAGGGCATTGATTTGT+GGG | 0.419434 | 6_2:-60586692 | None:intergenic |
| GAAAATGGCCATGTTAATAA+TGG | 0.423734 | 6_2:+60586927 | Msa0922330:CDS |
| TTTGATGCAGATGACATTCT+GGG | 0.431913 | 6_2:-60584956 | None:intergenic |
| GAATCTCCGCATCAAACCTT+AGG | 0.438119 | 6_2:+60587144 | Msa0922330:CDS |
| CGGAGAAGAAGTGGCGATGA+TGG | 0.438292 | 6_2:-60585056 | None:intergenic |
| GGACTGCTCGTAACAAGAAT+GGG | 0.442165 | 6_2:+60585651 | Msa0922330:CDS |
| CTCAGTTTGACCAATCAGAC+AGG | 0.442971 | 6_2:+60586374 | Msa0922330:CDS |
| GAATTTAACTATGGTATTCA+GGG | 0.446826 | 6_2:+60587339 | Msa0922330:CDS |
| GAAGAGAAAGACGACAAATT+GGG | 0.448380 | 6_2:+60588089 | Msa0922330:CDS |
| GATGGGTTTCCCCGGATTTG+AGG | 0.452323 | 6_2:-60585038 | None:intergenic |
| GAAGAAGGAACCAAATAATT+GGG | 0.458100 | 6_2:+60588111 | Msa0922330:exon |
| CTATGAAATGAACAACTTCA+AGG | 0.461461 | 6_2:+60585860 | Msa0922330:CDS |
| TAAATGATTCCAAGGAAACT+TGG | 0.462013 | 6_2:+60585600 | Msa0922330:CDS |
| TGTTTCAGGGCATTGATTTG+TGG | 0.466335 | 6_2:-60586693 | None:intergenic |
| ATGCGGAGATTCCAAAGAGT+TGG | 0.467571 | 6_2:-60587133 | None:intergenic |
| ATAATCAACACCTCAAATCC+GGG | 0.476279 | 6_2:+60585028 | Msa0922330:CDS |
| TGCGGAGATTCCAAAGAGTT+GGG | 0.478252 | 6_2:-60587132 | None:intergenic |
| AAATATAAGTTGCTTTGGAC+TGG | 0.480222 | 6_2:+60585921 | Msa0922330:CDS |
| TGGACTGCTCGTAACAAGAA+TGG | 0.484557 | 6_2:+60585650 | Msa0922330:CDS |
| TTTCTTTCAGGCTTACTGGT+AGG | 0.485603 | 6_2:-60587997 | None:intergenic |
| GCAGCCATTGAACCTGCAAC+TGG | 0.488295 | 6_2:+60586431 | Msa0922330:CDS |
| AAAACAAATTACATGTTTCA+GGG | 0.489492 | 6_2:-60586706 | None:intergenic |
| GGAGAAGAAGTGGCGATGAT+GGG | 0.506672 | 6_2:-60585055 | None:intergenic |
| TCAAAACAAGTTCTGTAATG+AGG | 0.507269 | 6_2:+60587380 | Msa0922330:CDS |
| TTCTTTCAGATCATCTCTCC+AGG | 0.507819 | 6_2:-60585829 | None:intergenic |
| AAGACGACAAATTGGGAAGA+AGG | 0.515939 | 6_2:+60588096 | Msa0922330:CDS |
| GCATATTCAAATGGTCGTAA+TGG | 0.517451 | 6_2:+60585679 | Msa0922330:CDS |
| TGTTAAAACAGAAACATATC+CGG | 0.521670 | 6_2:+60586542 | Msa0922330:intron |
| CTTGCTGAACTGTACTTTGT+GGG | 0.527058 | 6_2:+60586331 | Msa0922330:CDS |
| TCCTAATAATGAAAACAAAA+GGG | 0.536004 | 6_2:-60586406 | None:intergenic |
| GACTTTCCTTAGCTCAGTTG+AGG | 0.536072 | 6_2:+60587417 | Msa0922330:CDS |
| AGAAGATCTAAATGATTCCA+AGG | 0.550217 | 6_2:+60585592 | Msa0922330:intron |
| AATGGTCGTAATGGATGCTA+AGG | 0.552374 | 6_2:+60585688 | Msa0922330:CDS |
| GTGGCGATGATGGGTTTCCC+CGG | 0.558776 | 6_2:-60585046 | None:intergenic |
| CAGGAAGAGACATATTCAGT+AGG | 0.569651 | 6_2:-60585810 | None:intergenic |
| ACTTGCTGAACTGTACTTTG+TGG | 0.571992 | 6_2:+60586330 | Msa0922330:CDS |
| GGGTTCCGTCGGAGAAGAAG+TGG | 0.576265 | 6_2:-60585065 | None:intergenic |
| AAAATTTATACCTATTACGG+AGG | 0.577833 | 6_2:-60586042 | None:intergenic |
| TTAACGGAATCTTATAGAGA+TGG | 0.579956 | 6_2:-60585092 | None:intergenic |
| TGGTTACTAAAAGGAGTGGA+TGG | 0.584593 | 6_2:+60586841 | Msa0922330:CDS |
| TCATACTCAGTTGTAGCAGA+GGG | 0.585788 | 6_2:-60587689 | None:intergenic |
| CATCGCCACTTCTTCTCCGA+CGG | 0.588250 | 6_2:+60585060 | Msa0922330:CDS |
| GTTTGTCCTCAACTGAGCTA+AGG | 0.591035 | 6_2:-60587423 | None:intergenic |
| CGGTGTGTGTTACAAATGCA+TGG | 0.592574 | 6_2:+60586562 | Msa0922330:CDS |
| CTGTACGAATTGTTAATCTG+TGG | 0.592800 | 6_2:+60585630 | Msa0922330:CDS |
| AGGAAGAGACATATTCAGTA+GGG | 0.595199 | 6_2:-60585809 | None:intergenic |
| GAGTAGGTCCATTATTAACA+TGG | 0.603075 | 6_2:-60586935 | None:intergenic |
| GAATCTTATAGAGATGGTGA+TGG | 0.604223 | 6_2:-60585086 | None:intergenic |
| GTTAGTGAGGACCTTGGAGT+AGG | 0.607327 | 6_2:-60586951 | None:intergenic |
| AATCTTATAGAGATGGTGAT+GGG | 0.615820 | 6_2:-60585085 | None:intergenic |
| AAGGTGGTTACTAAAAGGAG+TGG | 0.617896 | 6_2:+60586837 | Msa0922330:CDS |
| ATATCATGATAGGTATAAGG+TGG | 0.620199 | 6_2:+60587049 | Msa0922330:intron |
| ATCATACTCAGTTGTAGCAG+AGG | 0.622170 | 6_2:-60587690 | None:intergenic |
| TTAATAATGGACCTACTCCA+AGG | 0.623193 | 6_2:+60586940 | Msa0922330:CDS |
| TCAGTTTGACCAATCAGACA+GGG | 0.625775 | 6_2:+60586375 | Msa0922330:CDS |
| ATGACATTCTGGGATTTGAG+TGG | 0.633623 | 6_2:-60584946 | None:intergenic |
| GGACAAACTGCTGAAAGAAG+AGG | 0.638449 | 6_2:+60587438 | Msa0922330:CDS |
| GAGATGGTGATGGGTTCCGT+CGG | 0.644523 | 6_2:-60585076 | None:intergenic |
| GACTGCTCGTAACAAGAATG+GGG | 0.646433 | 6_2:+60585652 | Msa0922330:CDS |
| AGGAGTGGATGGACTTACGA+TGG | 0.651423 | 6_2:+60586852 | Msa0922330:CDS |
| ACTGAGTATGATCCAGAGAA+CGG | 0.653132 | 6_2:+60587701 | Msa0922330:CDS |
| GCAATCACAGAATGATCATG+TGG | 0.663477 | 6_2:+60587573 | Msa0922330:CDS |
| CATGCATTTGTAACACACAC+CGG | 0.665034 | 6_2:-60586561 | None:intergenic |
| TGTGTTACAAATGCATGGAG+TGG | 0.666360 | 6_2:+60586567 | Msa0922330:CDS |
| AATTTCTCATGAGAGACACT+AGG | 0.669361 | 6_2:+60586214 | Msa0922330:CDS |
| TAAGAATAAATTCTCTAACG+AGG | 0.670613 | 6_2:+60586635 | Msa0922330:CDS |
| GGAGTTGACATCTGATGTTG+TGG | 0.677194 | 6_2:+60587966 | Msa0922330:intron |
| TAATCAACACCTCAAATCCG+GGG | 0.685946 | 6_2:+60585029 | Msa0922330:CDS |
| GTTGACATCTGATGTTGTGG+AGG | 0.689052 | 6_2:+60587969 | Msa0922330:CDS |
| AGTTTGACCAATCAGACAGG+GGG | 0.703292 | 6_2:+60586377 | Msa0922330:CDS |
| CAGTTTGACCAATCAGACAG+GGG | 0.703426 | 6_2:+60586376 | Msa0922330:CDS |
| ACTGCTCGTAACAAGAATGG+GGG | 0.722412 | 6_2:+60585653 | Msa0922330:CDS |
| CATACTCAGTTGTAGCAGAG+GGG | 0.734257 | 6_2:-60587688 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATACAATTTAAACA+TGG | - | chr6_2:60585729-60585748 | None:intergenic | 10.0% |
| !! | ATAAAAATTTATACCTATTA+CGG | - | chr6_2:60586048-60586067 | None:intergenic | 10.0% |
| !!! | TTTTTTTATTATATCATGAT+AGG | + | chr6_2:60587039-60587058 | Msa0922330:intron | 10.0% |
| !! | TTAATTAATGTATTTAATGA+TGG | - | chr6_2:60587204-60587223 | None:intergenic | 10.0% |
| !! | AAAATAAATATAAGTTGCTT+TGG | + | chr6_2:60585916-60585935 | Msa0922330:CDS | 15.0% |
| !! | TTTCTTATAACTATTTGTTT+GGG | - | chr6_2:60586184-60586203 | None:intergenic | 15.0% |
| !! | AACATTAACATCTTATTAAA+TGG | + | chr6_2:60586253-60586272 | Msa0922330:intron | 15.0% |
| !! | AAGTTTACTTTACATTTATT+TGG | + | chr6_2:60586481-60586500 | Msa0922330:intron | 15.0% |
| !! | AATTAAAGAATGTAGTTAAA+TGG | - | chr6_2:60586976-60586995 | None:intergenic | 15.0% |
| !! | AAAAACAGAATATATTTAAG+CGG | - | chr6_2:60587023-60587042 | None:intergenic | 15.0% |
| !!! | ATTTTAATAAGTGTACATTT+AGG | - | chr6_2:60587638-60587657 | None:intergenic | 15.0% |
| !!! | ACTATTTTTTTTCAATTCAT+AGG | + | chr6_2:60587945-60587964 | Msa0922330:intron | 15.0% |
| !!! | ATGGCAAATTGTTTTATTTA+TGG | - | chr6_2:60585270-60585289 | None:intergenic | 20.0% |
| !!! | AGTCTTCATCTTAAAATTTT+TGG | + | chr6_2:60585321-60585340 | Msa0922330:intron | 20.0% |
| !!! | AAACCATTTTCTTATACATT+AGG | + | chr6_2:60585447-60585466 | Msa0922330:intron | 20.0% |
| !! | TAACCTAATGTATAAGAAAA+TGG | - | chr6_2:60585453-60585472 | None:intergenic | 20.0% |
| !! | AAATACAATTTAAACATGGA+AGG | - | chr6_2:60585725-60585744 | None:intergenic | 20.0% |
| !! | ATAGACATACAATTATATGA+TGG | - | chr6_2:60585759-60585778 | None:intergenic | 20.0% |
| !!! | TAATTGTATGTCTATCTTTT+AGG | + | chr6_2:60585764-60585783 | Msa0922330:intron | 20.0% |
| !!! | AATTGTATGTCTATCTTTTA+GGG | + | chr6_2:60585765-60585784 | Msa0922330:intron | 20.0% |
| !! | TAATAATGATCTTCAGTTTA+AGG | + | chr6_2:60585887-60585906 | Msa0922330:CDS | 20.0% |
| !! | CTTTCTTATAACTATTTGTT+TGG | - | chr6_2:60586185-60586204 | None:intergenic | 20.0% |
| !!! | TTTTGATATCATATTTGAAG+TGG | + | chr6_2:60586305-60586324 | Msa0922330:intron | 20.0% |
| !!! | TTTGATATCATATTTGAAGT+GGG | + | chr6_2:60586306-60586325 | Msa0922330:intron | 20.0% |
| !! | TCCTAATAATGAAAACAAAA+GGG | - | chr6_2:60586409-60586428 | None:intergenic | 20.0% |
| !! | TTCCTAATAATGAAAACAAA+AGG | - | chr6_2:60586410-60586429 | None:intergenic | 20.0% |
| !!! | AGTTTCTAAAAAGTACAAAT+AGG | - | chr6_2:60586508-60586527 | None:intergenic | 20.0% |
| !! | AAAACAAATTACATGTTTCA+GGG | - | chr6_2:60586709-60586728 | None:intergenic | 20.0% |
| !! | TAAAACAAATTACATGTTTC+AGG | - | chr6_2:60586710-60586729 | None:intergenic | 20.0% |
| !!! | ATCTAATATGTAAACCTTTT+TGG | - | chr6_2:60586892-60586911 | None:intergenic | 20.0% |
| !! | AAAAAGGTTTACATATTAGA+TGG | + | chr6_2:60586891-60586910 | Msa0922330:CDS | 20.0% |
| !! | ATTATATCATGATAGGTATA+AGG | + | chr6_2:60587046-60587065 | Msa0922330:intron | 20.0% |
| !! | AATTCAATATCCAATACTAT+TGG | + | chr6_2:60587234-60587253 | Msa0922330:intron | 20.0% |
| !!! | TGCACTATAATGTTTTTTAA+TGG | + | chr6_2:60588152-60588171 | Msa0922330:three_prime_UTR | 20.0% |
| !!! | GATATTTTTCTGTTCTTTTA+TGG | + | chr6_2:60588206-60588225 | Msa0922330:three_prime_UTR | 20.0% |
| !!! | ATTTTGAGTGGTTGATTTTT+GGG | - | chr6_2:60584995-60585014 | None:intergenic | 25.0% |
| !!! | TATTTTGAGTGGTTGATTTT+TGG | - | chr6_2:60584996-60585015 | None:intergenic | 25.0% |
| ! | TTGAATAATGATGAAAGAGT+TGG | - | chr6_2:60585126-60585145 | None:intergenic | 25.0% |
| !! | ACAATTTGCCATCAAATTTT+AGG | + | chr6_2:60585278-60585297 | Msa0922330:intron | 25.0% |
| !!! | CCATCAAATTTTAGGTTTTT+GGG | + | chr6_2:60585286-60585305 | Msa0922330:intron | 25.0% |
| !! | TTTTTATGACTGAACTCATA+CGG | + | chr6_2:60585521-60585540 | Msa0922330:intron | 25.0% |
| ! | ATACGGAATAAATTAACAAC+AGG | + | chr6_2:60585538-60585557 | Msa0922330:intron | 25.0% |
| ! | AAAATCCTTGAAAAAGAAGT+GGG | - | chr6_2:60585991-60586010 | None:intergenic | 25.0% |
| ! | TAAAATCCTTGAAAAAGAAG+TGG | - | chr6_2:60585992-60586011 | None:intergenic | 25.0% |
| ! | AAAATTTATACCTATTACGG+AGG | - | chr6_2:60586045-60586064 | None:intergenic | 25.0% |
| ! | TAAGACAACAGAATATAGTT+AGG | - | chr6_2:60586127-60586146 | None:intergenic | 25.0% |
| !!! | ACCCTTTTGTTTTCATTATT+AGG | + | chr6_2:60586405-60586424 | Msa0922330:CDS | 25.0% |
| ! | AAATAAATTATACCAGTTGC+AGG | - | chr6_2:60586446-60586465 | None:intergenic | 25.0% |
| ! | TGTTAAAACAGAAACATATC+CGG | + | chr6_2:60586542-60586561 | Msa0922330:intron | 25.0% |
| ! | GATTTCTTGTAAATCTTGAT+TGG | - | chr6_2:60586607-60586626 | None:intergenic | 25.0% |
| ! | TAAGAATAAATTCTCTAACG+AGG | + | chr6_2:60586635-60586654 | Msa0922330:CDS | 25.0% |
| ! | TCAAAATTTGTGTTCTTTGA+TGG | + | chr6_2:60587101-60587120 | Msa0922330:CDS | 25.0% |
| !!! | CATCAATCATTTTTTTCCTA+AGG | - | chr6_2:60587163-60587182 | None:intergenic | 25.0% |
| ! | AAAGCTGTTGAATTTAACTA+TGG | + | chr6_2:60587330-60587349 | Msa0922330:CDS | 25.0% |
| ! | TGAATTTAACTATGGTATTC+AGG | + | chr6_2:60587338-60587357 | Msa0922330:CDS | 25.0% |
| ! | GAATTTAACTATGGTATTCA+GGG | + | chr6_2:60587339-60587358 | Msa0922330:CDS | 25.0% |
| ! | TTATCAATCAACTCTTGATA+TGG | + | chr6_2:60587478-60587497 | Msa0922330:intron | 25.0% |
| !! | AGAGAATCATATGCAATTTT+GGG | - | chr6_2:60587550-60587569 | None:intergenic | 25.0% |
| !! | AAGAGAATCATATGCAATTT+TGG | - | chr6_2:60587551-60587570 | None:intergenic | 25.0% |
| ! | AATGGAAAAATATGTGTCAA+AGG | - | chr6_2:60587837-60587856 | None:intergenic | 25.0% |
| !!! | GTTTTTTAATGGTTAAGTCT+AGG | + | chr6_2:60588163-60588182 | Msa0922330:three_prime_UTR | 25.0% |
| !!! | GGATTATTTTTTACCAATTC+TGG | + | chr6_2:60588184-60588203 | Msa0922330:three_prime_UTR | 25.0% |
| ! | AACAGAAAAATATCCAGAAT+TGG | - | chr6_2:60588200-60588219 | None:intergenic | 25.0% |
| !! | GATTTCTCACATATTTTGAG+TGG | - | chr6_2:60585007-60585026 | None:intergenic | 30.0% |
| AATCTTATAGAGATGGTGAT+GGG | - | chr6_2:60585088-60585107 | None:intergenic | 30.0% | |
| TTAACGGAATCTTATAGAGA+TGG | - | chr6_2:60585095-60585114 | None:intergenic | 30.0% | |
| AGAGTTGGAGAAGAAATTAA+CGG | - | chr6_2:60585111-60585130 | None:intergenic | 30.0% | |
| !!! | GCCATCAAATTTTAGGTTTT+TGG | + | chr6_2:60585285-60585304 | Msa0922330:intron | 30.0% |
| CCCAAAAACCTAAAATTTGA+TGG | - | chr6_2:60585289-60585308 | None:intergenic | 30.0% | |
| !! | TTTGGTTTGTGTTAAACACT+TGG | + | chr6_2:60585339-60585358 | Msa0922330:intron | 30.0% |
| AAAGTAAACTGTTACGTTCA+TGG | - | chr6_2:60585498-60585517 | None:intergenic | 30.0% | |
| GATCTTCTAATGAGTCAAAT+GGG | - | chr6_2:60585580-60585599 | None:intergenic | 30.0% | |
| AGATCTTCTAATGAGTCAAA+TGG | - | chr6_2:60585581-60585600 | None:intergenic | 30.0% | |
| AGAAGATCTAAATGATTCCA+AGG | + | chr6_2:60585592-60585611 | Msa0922330:intron | 30.0% | |
| TAAATGATTCCAAGGAAACT+TGG | + | chr6_2:60585600-60585619 | Msa0922330:CDS | 30.0% | |
| CTATGAAATGAACAACTTCA+AGG | + | chr6_2:60585860-60585879 | Msa0922330:CDS | 30.0% | |
| ! | AAATATAAGTTGCTTTGGAC+TGG | + | chr6_2:60585921-60585940 | Msa0922330:CDS | 30.0% |
| TTGAAAAAGAAGTGGGTATT+GGG | - | chr6_2:60585984-60586003 | None:intergenic | 30.0% | |
| TCTGTTGTCTTAGATATCAT+TGG | + | chr6_2:60586135-60586154 | Msa0922330:intron | 30.0% | |
| !! | ATCTTGATTGGTAATGATTC+TGG | - | chr6_2:60586595-60586614 | None:intergenic | 30.0% |
| !! | TAGATGCTTTAGTTTGTTCA+AGG | - | chr6_2:60586733-60586752 | None:intergenic | 30.0% |
| GAAAATGGCCATGTTAATAA+TGG | + | chr6_2:60586927-60586946 | Msa0922330:CDS | 30.0% | |
| ATGTAGTTAAATGGTTAGTG+AGG | - | chr6_2:60586967-60586986 | None:intergenic | 30.0% | |
| AATTAGTGTTTGATGCAAAC+TGG | + | chr6_2:60586992-60587011 | Msa0922330:intron | 30.0% | |
| ATATCATGATAGGTATAAGG+TGG | + | chr6_2:60587049-60587068 | Msa0922330:intron | 30.0% | |
| !!! | TTTTTTCCTAAGGTTTGATG+CGG | - | chr6_2:60587153-60587172 | None:intergenic | 30.0% |
| AAGGCTTAAACCAATAGTAT+TGG | - | chr6_2:60587247-60587266 | None:intergenic | 30.0% | |
| CTGCACAATAAAGCAAAATA+AGG | - | chr6_2:60587266-60587285 | None:intergenic | 30.0% | |
| !!! | CTTATTTTGCTTTATTGTGC+AGG | + | chr6_2:60587264-60587283 | Msa0922330:intron | 30.0% |
| !!! | ACAGAACTTGTTTTGAATGT+TGG | - | chr6_2:60587376-60587395 | None:intergenic | 30.0% |
| TCAAAACAAGTTCTGTAATG+AGG | + | chr6_2:60587380-60587399 | Msa0922330:CDS | 30.0% | |
| ! | TTTTTCTCTTTTCAGACAAC+TGG | + | chr6_2:60587520-60587539 | Msa0922330:intron | 30.0% |
| AAAAAGGTTGTCTTCAAAAG+AGG | + | chr6_2:60587742-60587761 | Msa0922330:CDS | 30.0% | |
| TTGTTGGAGATAGTTAAACT+GGG | - | chr6_2:60587784-60587803 | None:intergenic | 30.0% | |
| TTTGTTGGAGATAGTTAAAC+TGG | - | chr6_2:60587785-60587804 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTTATGACTCTTCC+AGG | - | chr6_2:60587809-60587828 | None:intergenic | 30.0% |
| ! | AAAGCTTGATGTGTTATTCT+GGG | - | chr6_2:60587923-60587942 | None:intergenic | 30.0% |
| ! | AAAAGCTTGATGTGTTATTC+TGG | - | chr6_2:60587924-60587943 | None:intergenic | 30.0% |
| ! | TCAGCAAATCTTTTTCTTTC+AGG | - | chr6_2:60588012-60588031 | None:intergenic | 30.0% |
| GAAGAAGGAACCAAATAATT+GGG | + | chr6_2:60588111-60588130 | Msa0922330:exon | 30.0% | |
| TCTTTCTCTTCCCAATTATT+TGG | - | chr6_2:60588124-60588143 | None:intergenic | 30.0% | |
| ! | CTGTTCTTTTATGGAATGAA+AGG | + | chr6_2:60588215-60588234 | Msa0922330:three_prime_UTR | 30.0% |
| TTTGATGCAGATGACATTCT+GGG | - | chr6_2:60584959-60584978 | None:intergenic | 35.0% | |
| ATTTGATGCAGATGACATTC+TGG | - | chr6_2:60584960-60584979 | None:intergenic | 35.0% | |
| CATAATCAACACCTCAAATC+CGG | + | chr6_2:60585027-60585046 | Msa0922330:CDS | 35.0% | |
| ATAATCAACACCTCAAATCC+GGG | + | chr6_2:60585028-60585047 | Msa0922330:CDS | 35.0% | |
| GAATCTTATAGAGATGGTGA+TGG | - | chr6_2:60585089-60585108 | None:intergenic | 35.0% | |
| TTAACAACAGGATGAAGACT+TGG | + | chr6_2:60585550-60585569 | Msa0922330:intron | 35.0% | |
| AGCAAATTTCCAAGTTTCCT+TGG | - | chr6_2:60585612-60585631 | None:intergenic | 35.0% | |
| CTGTACGAATTGTTAATCTG+TGG | + | chr6_2:60585630-60585649 | Msa0922330:CDS | 35.0% | |
| GCATATTCAAATGGTCGTAA+TGG | + | chr6_2:60585679-60585698 | Msa0922330:CDS | 35.0% | |
| !!! | TGTCTATCTTTTAGGGTCAT+AGG | + | chr6_2:60585772-60585791 | Msa0922330:intron | 35.0% |
| !!! | GTCTATCTTTTAGGGTCATA+GGG | + | chr6_2:60585773-60585792 | Msa0922330:intron | 35.0% |
| AGGAAGAGACATATTCAGTA+GGG | - | chr6_2:60585812-60585831 | None:intergenic | 35.0% | |
| CTTGAAAAAGAAGTGGGTAT+TGG | - | chr6_2:60585985-60586004 | None:intergenic | 35.0% | |
| !! | CAATACCCACTTCTTTTTCA+AGG | + | chr6_2:60585983-60586002 | Msa0922330:CDS | 35.0% |
| !! | GATTTTAGTGAGATACAGAG+TGG | + | chr6_2:60586005-60586024 | Msa0922330:CDS | 35.0% |
| AATTTCTCATGAGAGACACT+AGG | + | chr6_2:60586214-60586233 | Msa0922330:CDS | 35.0% | |
| ! | ACATTTTCTCTTTTGATGCC+AGG | + | chr6_2:60586782-60586801 | Msa0922330:intron | 35.0% |
| !!! | CACCTTGTTAGTTTTTGCAA+CGG | - | chr6_2:60586823-60586842 | None:intergenic | 35.0% |
| CTAACAAGGTGGTTACTAAA+AGG | + | chr6_2:60586832-60586851 | Msa0922330:CDS | 35.0% | |
| ATGTTACATGTGCACCAAAA+AGG | + | chr6_2:60586875-60586894 | Msa0922330:CDS | 35.0% | |
| GGTCAACTAAAGTGTGAAAA+TGG | + | chr6_2:60586912-60586931 | Msa0922330:CDS | 35.0% | |
| GAGTAGGTCCATTATTAACA+TGG | - | chr6_2:60586938-60586957 | None:intergenic | 35.0% | |
| !! | TTAATAATGGACCTACTCCA+AGG | + | chr6_2:60586940-60586959 | Msa0922330:CDS | 35.0% |
| !!! | AGCTTTTTTTCGAACAGGTA+TGG | - | chr6_2:60587316-60587335 | None:intergenic | 35.0% |
| !!! | TCAACAGCTTTTTTTCGAAC+AGG | - | chr6_2:60587321-60587340 | None:intergenic | 35.0% |
| CGAATACAAATCCTGCAAAA+AGG | + | chr6_2:60587726-60587745 | Msa0922330:CDS | 35.0% | |
| ! | TTTGAAGACAACCTTTTTGC+AGG | - | chr6_2:60587740-60587759 | None:intergenic | 35.0% |
| TGTTGGAGATAGTTAAACTG+GGG | - | chr6_2:60587783-60587802 | None:intergenic | 35.0% | |
| TAACTATCTCCAACAAAACC+TGG | + | chr6_2:60587788-60587807 | Msa0922330:intron | 35.0% | |
| AGTGAGAGATGCTAATGAAA+TGG | - | chr6_2:60587855-60587874 | None:intergenic | 35.0% | |
| ATGTGAGAGATGCATATGTT+TGG | - | chr6_2:60587879-60587898 | None:intergenic | 35.0% | |
| ! | TCTTTTTCTTTCAGGCTTAC+TGG | - | chr6_2:60588004-60588023 | None:intergenic | 35.0% |
| CAAAAATCATTCAAGGCACA+TGG | - | chr6_2:60588045-60588064 | None:intergenic | 35.0% | |
| ! | TGTGCCTTGAATGATTTTTG+TGG | + | chr6_2:60588045-60588064 | Msa0922330:CDS | 35.0% |
| ! | GTGCCTTGAATGATTTTTGT+GGG | + | chr6_2:60588046-60588065 | Msa0922330:CDS | 35.0% |
| AGTCCCACAAAAATCATTCA+AGG | - | chr6_2:60588052-60588071 | None:intergenic | 35.0% | |
| AGAAGAGAAAGACGACAAAT+TGG | + | chr6_2:60588088-60588107 | Msa0922330:CDS | 35.0% | |
| GAAGAGAAAGACGACAAATT+GGG | + | chr6_2:60588089-60588108 | Msa0922330:CDS | 35.0% | |
| GGAAGAAGGAACCAAATAAT+TGG | + | chr6_2:60588110-60588129 | Msa0922330:exon | 35.0% | |
| !!! | GGTTGTTTTTGAGAGTAGCT+TGG | - | chr6_2:60584928-60584947 | None:intergenic | 40.0% |
| !! | ATGACATTCTGGGATTTGAG+TGG | - | chr6_2:60584949-60584968 | None:intergenic | 40.0% |
| !! | GTTGATTTTTGGGAGTAGCT+TGG | - | chr6_2:60584985-60585004 | None:intergenic | 40.0% |
| !! | CGGATTTGAGGTGTTGATTA+TGG | - | chr6_2:60585029-60585048 | None:intergenic | 40.0% |
| TAATCAACACCTCAAATCCG+GGG | + | chr6_2:60585029-60585048 | Msa0922330:CDS | 40.0% | |
| !! | AATGGTCGTAATGGATGCTA+AGG | + | chr6_2:60585688-60585707 | Msa0922330:CDS | 40.0% |
| CAGGAAGAGACATATTCAGT+AGG | - | chr6_2:60585813-60585832 | None:intergenic | 40.0% | |
| CTACTGAATATGTCTCTTCC+TGG | + | chr6_2:60585811-60585830 | Msa0922330:CDS | 40.0% | |
| TTCTTTCAGATCATCTCTCC+AGG | - | chr6_2:60585832-60585851 | None:intergenic | 40.0% | |
| TAAATGGAAACCAGACTGCA+CGG | + | chr6_2:60586269-60586288 | Msa0922330:intron | 40.0% | |
| ! | ACTTGCTGAACTGTACTTTG+TGG | + | chr6_2:60586330-60586349 | Msa0922330:CDS | 40.0% |
| CTTGCTGAACTGTACTTTGT+GGG | + | chr6_2:60586331-60586350 | Msa0922330:CDS | 40.0% | |
| TCAGTTTGACCAATCAGACA+GGG | + | chr6_2:60586375-60586394 | Msa0922330:CDS | 40.0% | |
| TATACCAGTTGCAGGTTCAA+TGG | - | chr6_2:60586438-60586457 | None:intergenic | 40.0% | |
| CATGCATTTGTAACACACAC+CGG | - | chr6_2:60586564-60586583 | None:intergenic | 40.0% | |
| TGTGTTACAAATGCATGGAG+TGG | + | chr6_2:60586567-60586586 | Msa0922330:CDS | 40.0% | |
| !! | GTTTCAGGGCATTGATTTGT+GGG | - | chr6_2:60586695-60586714 | None:intergenic | 40.0% |
| !! | TGTTTCAGGGCATTGATTTG+TGG | - | chr6_2:60586696-60586715 | None:intergenic | 40.0% |
| GACCGTTGCAAAAACTAACA+AGG | + | chr6_2:60586818-60586837 | Msa0922330:CDS | 40.0% | |
| CGTTGCAAAAACTAACAAGG+TGG | + | chr6_2:60586821-60586840 | Msa0922330:CDS | 40.0% | |
| AAGGTGGTTACTAAAAGGAG+TGG | + | chr6_2:60586837-60586856 | Msa0922330:CDS | 40.0% | |
| TGGTTACTAAAAGGAGTGGA+TGG | + | chr6_2:60586841-60586860 | Msa0922330:CDS | 40.0% | |
| TAAATGGTTAGTGAGGACCT+TGG | - | chr6_2:60586960-60586979 | None:intergenic | 40.0% | |
| !! | TTTTGCTTTATTGTGCAGGC+TGG | + | chr6_2:60587268-60587287 | Msa0922330:intron | 40.0% |
| CTATGGTATTCAGGGTGAAA+TGG | + | chr6_2:60587347-60587366 | Msa0922330:CDS | 40.0% | |
| GCAATCACAGAATGATCATG+TGG | + | chr6_2:60587573-60587592 | Msa0922330:CDS | 40.0% | |
| TCATACTCAGTTGTAGCAGA+GGG | - | chr6_2:60587692-60587711 | None:intergenic | 40.0% | |
| ATCATACTCAGTTGTAGCAG+AGG | - | chr6_2:60587693-60587712 | None:intergenic | 40.0% | |
| ACTGAGTATGATCCAGAGAA+CGG | + | chr6_2:60587701-60587720 | Msa0922330:CDS | 40.0% | |
| TTTGTATTCGAACCGTTCTC+TGG | - | chr6_2:60587716-60587735 | None:intergenic | 40.0% | |
| !! | ATGACTCTTCCAGGTTTTGT+TGG | - | chr6_2:60587800-60587819 | None:intergenic | 40.0% |
| TTTCTTTCAGGCTTACTGGT+AGG | - | chr6_2:60588000-60588019 | None:intergenic | 40.0% | |
| AAGACGACAAATTGGGAAGA+AGG | + | chr6_2:60588096-60588115 | Msa0922330:CDS | 40.0% | |
| TGGACTGCTCGTAACAAGAA+TGG | + | chr6_2:60585650-60585669 | Msa0922330:CDS | 45.0% | |
| GGACTGCTCGTAACAAGAAT+GGG | + | chr6_2:60585651-60585670 | Msa0922330:CDS | 45.0% | |
| GACTGCTCGTAACAAGAATG+GGG | + | chr6_2:60585652-60585671 | Msa0922330:CDS | 45.0% | |
| ACTGCTCGTAACAAGAATGG+GGG | + | chr6_2:60585653-60585672 | Msa0922330:CDS | 45.0% | |
| ! | TGGGGGAGAGCATATTCAAA+TGG | + | chr6_2:60585670-60585689 | Msa0922330:CDS | 45.0% |
| !! | GTCGTAATGGATGCTAAGGT+AGG | + | chr6_2:60585692-60585711 | Msa0922330:intron | 45.0% |
| TTTCAGTGTGCCTCCGTAAT+AGG | + | chr6_2:60586032-60586051 | Msa0922330:CDS | 45.0% | |
| CTCAGTTTGACCAATCAGAC+AGG | + | chr6_2:60586374-60586393 | Msa0922330:CDS | 45.0% | |
| CAGTTTGACCAATCAGACAG+GGG | + | chr6_2:60586376-60586395 | Msa0922330:CDS | 45.0% | |
| AGTTTGACCAATCAGACAGG+GGG | + | chr6_2:60586377-60586396 | Msa0922330:CDS | 45.0% | |
| CGGTGTGTGTTACAAATGCA+TGG | + | chr6_2:60586562-60586581 | Msa0922330:CDS | 45.0% | |
| TGCGGAGATTCCAAAGAGTT+GGG | - | chr6_2:60587135-60587154 | None:intergenic | 45.0% | |
| ATGCGGAGATTCCAAAGAGT+TGG | - | chr6_2:60587136-60587155 | None:intergenic | 45.0% | |
| GAATCTCCGCATCAAACCTT+AGG | + | chr6_2:60587144-60587163 | Msa0922330:CDS | 45.0% | |
| GACTTTCCTTAGCTCAGTTG+AGG | + | chr6_2:60587417-60587436 | Msa0922330:CDS | 45.0% | |
| GTTTGTCCTCAACTGAGCTA+AGG | - | chr6_2:60587426-60587445 | None:intergenic | 45.0% | |
| GGACAAACTGCTGAAAGAAG+AGG | + | chr6_2:60587438-60587457 | Msa0922330:CDS | 45.0% | |
| CATACTCAGTTGTAGCAGAG+GGG | - | chr6_2:60587691-60587710 | None:intergenic | 45.0% | |
| GGAGTTGACATCTGATGTTG+TGG | + | chr6_2:60587966-60587985 | Msa0922330:intron | 45.0% | |
| GTTGACATCTGATGTTGTGG+AGG | + | chr6_2:60587969-60587988 | Msa0922330:CDS | 45.0% | |
| GGAGAAGAAGTGGCGATGAT+GGG | - | chr6_2:60585058-60585077 | None:intergenic | 50.0% | |
| TTAGTACAGTCCGTGCAGTC+TGG | - | chr6_2:60586282-60586301 | None:intergenic | 50.0% | |
| GTATTGTCCCCCTGTCTGAT+TGG | - | chr6_2:60586387-60586406 | None:intergenic | 50.0% | |
| ! | TTTTGCAACGGTCACGCAAC+AGG | - | chr6_2:60586811-60586830 | None:intergenic | 50.0% |
| ! | AGGAGTGGATGGACTTACGA+TGG | + | chr6_2:60586852-60586871 | Msa0922330:CDS | 50.0% |
| GTTAGTGAGGACCTTGGAGT+AGG | - | chr6_2:60586954-60586973 | None:intergenic | 50.0% | |
| GGAGTTTGCACCCAACTCTT+TGG | + | chr6_2:60587122-60587141 | Msa0922330:CDS | 50.0% | |
| ! | GATGGGTTTCCCCGGATTTG+AGG | - | chr6_2:60585041-60585060 | None:intergenic | 55.0% |
| CGGAGAAGAAGTGGCGATGA+TGG | - | chr6_2:60585059-60585078 | None:intergenic | 55.0% | |
| CATCGCCACTTCTTCTCCGA+CGG | + | chr6_2:60585060-60585079 | Msa0922330:CDS | 55.0% | |
| !! | GAGATGGTGATGGGTTCCGT+CGG | - | chr6_2:60585079-60585098 | None:intergenic | 55.0% |
| GCAGCCATTGAACCTGCAAC+TGG | + | chr6_2:60586431-60586450 | Msa0922330:CDS | 55.0% | |
| !! | GTGGCGATGATGGGTTTCCC+CGG | - | chr6_2:60585049-60585068 | None:intergenic | 60.0% |
| GGGTTCCGTCGGAGAAGAAG+TGG | - | chr6_2:60585068-60585087 | None:intergenic | 60.0% | |
| CGGTCACGCAACAGGTTTCC+TGG | - | chr6_2:60586803-60586822 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 60584905 | 60588243 | 60584905 | ID=Msa0922330;Name=Msa0922330 |
| chr6_2 | mRNA | 60584905 | 60588243 | 60584905 | ID=Msa0922330-mRNA-1;Parent=Msa0922330;Name=Msa0922330-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.90|0.83|0.91|1|1|12|115|576 |
| chr6_2 | exon | 60584905 | 60585109 | 60584905 | ID=Msa0922330-mRNA-1:exon:9316;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60585594 | 60585709 | 60585594 | ID=Msa0922330-mRNA-1:exon:9317;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60585786 | 60586053 | 60585786 | ID=Msa0922330-mRNA-1:exon:9318;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60586148 | 60586235 | 60586148 | ID=Msa0922330-mRNA-1:exon:9319;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60586325 | 60586452 | 60586325 | ID=Msa0922330-mRNA-1:exon:9320;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60586553 | 60586716 | 60586553 | ID=Msa0922330-mRNA-1:exon:9321;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60586804 | 60586961 | 60586804 | ID=Msa0922330-mRNA-1:exon:9322;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60587061 | 60587181 | 60587061 | ID=Msa0922330-mRNA-1:exon:9323;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60587286 | 60587459 | 60587286 | ID=Msa0922330-mRNA-1:exon:9324;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60587535 | 60587594 | 60587535 | ID=Msa0922330-mRNA-1:exon:9325;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60587677 | 60587763 | 60587677 | ID=Msa0922330-mRNA-1:exon:9326;Parent=Msa0922330-mRNA-1 |
| chr6_2 | exon | 60587967 | 60588243 | 60587967 | ID=Msa0922330-mRNA-1:exon:9327;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60584905 | 60585109 | 60584905 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60585594 | 60585709 | 60585594 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60585786 | 60586053 | 60585786 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60586148 | 60586235 | 60586148 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60586325 | 60586452 | 60586325 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60586553 | 60586716 | 60586553 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60586804 | 60586961 | 60586804 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60587061 | 60587181 | 60587061 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60587286 | 60587459 | 60587286 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60587535 | 60587594 | 60587535 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60587677 | 60587763 | 60587677 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | CDS | 60587967 | 60588128 | 60587967 | ID=Msa0922330-mRNA-1:cds;Parent=Msa0922330-mRNA-1 |
| chr6_2 | three_prime_UTR | 60588129 | 60588243 | 60588129 | ID=Msa0922330-mRNA-1:three_prime_utr;Parent=Msa0922330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
