Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa1169090 | 0.811624 | 6.379706e-51 | -8.615850e-47 |
| Msa0012060 | Msa1169090 | 0.802438 | 5.610589e-49 | -8.615850e-47 |
| Msa0017510 | Msa1169090 | 0.843103 | 1.720848e-58 | -8.615850e-47 |
| Msa0077610 | Msa1169090 | 0.802361 | 5.817738e-49 | -8.615850e-47 |
| Msa0101810 | Msa1169090 | -0.817701 | 2.876730e-52 | -8.615850e-47 |
| Msa0657610 | Msa1169090 | 0.802195 | 6.295522e-49 | -8.615850e-47 |
| Msa0657970 | Msa1169090 | 0.839571 | 1.462982e-57 | -8.615850e-47 |
| Msa0658570 | Msa1169090 | 0.800278 | 1.553814e-48 | -8.615850e-47 |
| Msa0661190 | Msa1169090 | -0.803422 | 3.513178e-49 | -8.615850e-47 |
| Msa0669320 | Msa1169090 | 0.809046 | 2.295805e-50 | -8.615850e-47 |
| Msa0669440 | Msa1169090 | 0.804561 | 2.036210e-49 | -8.615850e-47 |
| Msa0690440 | Msa1169090 | 0.815803 | 7.665844e-52 | -8.615850e-47 |
| Msa0696640 | Msa1169090 | 0.811661 | 6.263077e-51 | -8.615850e-47 |
| Msa0710060 | Msa1169090 | 0.811542 | 6.647406e-51 | -8.615850e-47 |
| Msa0756630 | Msa1169090 | -0.801778 | 7.667421e-49 | -8.615850e-47 |
| Msa0769390 | Msa1169090 | 0.809695 | 1.666194e-50 | -8.615850e-47 |
| Msa0777930 | Msa1169090 | 0.816410 | 5.611385e-52 | -8.615850e-47 |
| Msa0832370 | Msa1169090 | 0.813500 | 2.480623e-51 | -8.615850e-47 |
| Msa0140780 | Msa1169090 | 0.817532 | 3.141110e-52 | -8.615850e-47 |
| Msa0157290 | Msa1169090 | 0.843063 | 1.763727e-58 | -8.615850e-47 |
| Msa0157310 | Msa1169090 | 0.808918 | 2.446066e-50 | -8.615850e-47 |
| Msa0166870 | Msa1169090 | 0.800930 | 1.143582e-48 | -8.615850e-47 |
| Msa0173990 | Msa1169090 | 0.802666 | 5.034426e-49 | -8.615850e-47 |
| Msa0179580 | Msa1169090 | 0.811121 | 8.202382e-51 | -8.615850e-47 |
| Msa0188830 | Msa1169090 | 0.808112 | 3.633584e-50 | -8.615850e-47 |
| Msa0200260 | Msa1169090 | 0.813580 | 2.382343e-51 | -8.615850e-47 |
| Msa0379640 | Msa1169090 | 0.805066 | 1.596839e-49 | -8.615850e-47 |
| Msa0389340 | Msa1169090 | 0.808387 | 3.176066e-50 | -8.615850e-47 |
| Msa0395790 | Msa1169090 | 0.803694 | 3.084456e-49 | -8.615850e-47 |
| Msa0395970 | Msa1169090 | 0.804324 | 2.281322e-49 | -8.615850e-47 |
| Msa0437990 | Msa1169090 | 0.860109 | 2.597411e-63 | -8.615850e-47 |
| Msa0466390 | Msa1169090 | 0.830841 | 2.340001e-55 | -8.615850e-47 |
| Msa0990960 | Msa1169090 | 0.811685 | 6.186268e-51 | -8.615850e-47 |
| Msa0993290 | Msa1169090 | 0.804272 | 2.339760e-49 | -8.615850e-47 |
| Msa0993600 | Msa1169090 | 0.810854 | 9.371379e-51 | -8.615850e-47 |
| Msa0995270 | Msa1169090 | 0.816792 | 4.606693e-52 | -8.615850e-47 |
| Msa0998690 | Msa1169090 | 0.802114 | 6.540166e-49 | -8.615850e-47 |
| Msa1003620 | Msa1169090 | 0.814073 | 1.854764e-51 | -8.615850e-47 |
| Msa1014540 | Msa1169090 | 0.826390 | 2.784446e-54 | -8.615850e-47 |
| Msa1030970 | Msa1169090 | 0.800995 | 1.109450e-48 | -8.615850e-47 |
| Msa1044420 | Msa1169090 | 0.804092 | 2.550488e-49 | -8.615850e-47 |
| Msa1045200 | Msa1169090 | 0.810808 | 9.586876e-51 | -8.615850e-47 |
| Msa1075220 | Msa1169090 | -0.813103 | 3.032520e-51 | -8.615850e-47 |
| Msa1079180 | Msa1169090 | 0.868325 | 7.100660e-66 | -8.615850e-47 |
| Msa1082500 | Msa1169090 | 0.809390 | 1.937956e-50 | -8.615850e-47 |
| Msa1085300 | Msa1169090 | 0.811053 | 8.487049e-51 | -8.615850e-47 |
| Msa1098560 | Msa1169090 | 0.800050 | 1.728628e-48 | -8.615850e-47 |
| Msa0243100 | Msa1169090 | 0.817738 | 2.821987e-52 | -8.615850e-47 |
| Msa0284420 | Msa1169090 | 0.801580 | 8.420537e-49 | -8.615850e-47 |
| Msa0287650 | Msa1169090 | 0.815141 | 1.076104e-51 | -8.615850e-47 |
| Msa0288100 | Msa1169090 | 0.819687 | 1.018920e-52 | -8.615850e-47 |
| Msa0320740 | Msa1169090 | 0.810408 | 1.170176e-50 | -8.615850e-47 |
| Msa0337900 | Msa1169090 | 0.805593 | 1.238582e-49 | -8.615850e-47 |
| Msa0338000 | Msa1169090 | 0.803058 | 4.179068e-49 | -8.615850e-47 |
| Msa0338110 | Msa1169090 | 0.800453 | 1.430811e-48 | -8.615850e-47 |
| Msa0345970 | Msa1169090 | 0.810420 | 1.162838e-50 | -8.615850e-47 |
| Msa0351100 | Msa1169090 | 0.804440 | 2.158171e-49 | -8.615850e-47 |
| Msa1116130 | Msa1169090 | -0.812406 | 4.308757e-51 | -8.615850e-47 |
| Msa1124050 | Msa1169090 | 0.948257 | 1.350832e-106 | -8.615850e-47 |
| Msa1162550 | Msa1169090 | -0.823661 | 1.228068e-53 | -8.615850e-47 |
| Msa1169000 | Msa1169090 | 0.870245 | 1.687778e-66 | -8.615850e-47 |
| Msa1169090 | Msa1186060 | 0.800219 | 1.596883e-48 | -8.615850e-47 |
| Msa1169090 | Msa1205130 | 0.814881 | 1.229120e-51 | -8.615850e-47 |
| Msa1169090 | Msa1228210 | 0.808226 | 3.436866e-50 | -8.615850e-47 |
| Msa1169090 | Msa1239720 | 0.804761 | 1.849418e-49 | -8.615850e-47 |
| Msa1169090 | Msa1242220 | 0.801294 | 9.638725e-49 | -8.615850e-47 |
| Msa1169090 | Msa1253020 | 0.801721 | 7.878077e-49 | -8.615850e-47 |
| Msa1169090 | Msa1271280 | 0.814134 | 1.798237e-51 | -8.615850e-47 |
| Msa1169090 | Msa1271290 | 0.822060 | 2.899441e-53 | -8.615850e-47 |
| Msa1169090 | Msa1271300 | 0.836404 | 9.545064e-57 | -8.615850e-47 |
| Msa1169090 | Msa1283860 | 0.823124 | 1.640310e-53 | -8.615850e-47 |
| Msa1169090 | Msa1289280 | 0.809428 | 1.901957e-50 | -8.615850e-47 |
| Msa1169090 | Msa1308380 | 0.822597 | 2.175808e-53 | -8.615850e-47 |
| Msa1169090 | Msa1314340 | 0.812531 | 4.045249e-51 | -8.615850e-47 |
| Msa1169090 | Msa1322890 | 0.819476 | 1.138276e-52 | -8.615850e-47 |
| Msa1169090 | Msa1324500 | 0.804651 | 1.949928e-49 | -8.615850e-47 |
| Msa1169090 | Msa1324780 | 0.809978 | 1.448479e-50 | -8.615850e-47 |
| Msa1169090 | Msa1327680 | 0.809521 | 1.815874e-50 | -8.615850e-47 |
| Msa1169090 | Msa1340650 | 0.807623 | 4.618483e-50 | -8.615850e-47 |
| Msa1169090 | Msa1359040 | 0.807261 | 5.511228e-50 | -8.615850e-47 |
| Msa1169090 | Msa1376890 | 0.800769 | 1.233968e-48 | -8.615850e-47 |
| Msa1169090 | Msa1384350 | 0.825153 | 5.473900e-54 | -8.615850e-47 |
| Msa1169090 | Msa1392260 | 0.822115 | 2.814471e-53 | -8.615850e-47 |
| Msa1169090 | Msa1429900 | 0.812002 | 5.277962e-51 | -8.615850e-47 |
| Msa1169090 | Msa1438250 | 0.805241 | 1.467992e-49 | -8.615850e-47 |
| Msa1169090 | Msa1445610 | -0.804717 | 1.888915e-49 | -8.615850e-47 |
| Msa1169090 | Msa1452240 | 0.807941 | 3.951412e-50 | -8.615850e-47 |
| Msa1169090 | Msa1461300 | 0.806568 | 7.723762e-50 | -8.615850e-47 |
| Msa0484780 | Msa1169090 | 0.807409 | 5.126403e-50 | -8.615850e-47 |
| Msa0509610 | Msa1169090 | 0.800647 | 1.306552e-48 | -8.615850e-47 |
| Msa0512900 | Msa1169090 | 0.805248 | 1.462722e-49 | -8.615850e-47 |
| Msa0532060 | Msa1169090 | 0.817854 | 2.657032e-52 | -8.615850e-47 |
| Msa0532170 | Msa1169090 | 0.824858 | 6.426094e-54 | -8.615850e-47 |
| Msa0536220 | Msa1169090 | 0.828240 | 1.003627e-54 | -8.615850e-47 |
| Msa0553460 | Msa1169090 | 0.805453 | 1.325137e-49 | -8.615850e-47 |
| Msa0555020 | Msa1169090 | 0.821025 | 5.028703e-53 | -8.615850e-47 |
| Msa0558690 | Msa1169090 | 0.823970 | 1.039463e-53 | -8.615850e-47 |
| Msa0590840 | Msa1169090 | 0.809994 | 1.437052e-50 | -8.615850e-47 |
| Msa0597330 | Msa1169090 | 0.807075 | 6.033692e-50 | -8.615850e-47 |
| Msa0858840 | Msa1169090 | 0.806315 | 8.731417e-50 | -8.615850e-47 |
| Msa0880140 | Msa1169090 | 0.842551 | 2.413762e-58 | -8.615850e-47 |
| Msa0885280 | Msa1169090 | 0.845833 | 3.172547e-59 | -8.615850e-47 |
| Msa0907070 | Msa1169090 | 0.818841 | 1.587875e-52 | -8.615850e-47 |
| Msa0922330 | Msa1169090 | 0.801828 | 7.489603e-49 | -8.615850e-47 |
| Msa0930390 | Msa1169090 | 0.805660 | 1.199250e-49 | -8.615850e-47 |
| Msa0942200 | Msa1169090 | 0.802505 | 5.435550e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTACTCGTGCTATTA+TGG | 0.109957 | 7_4:+62033852 | Msa1169090:CDS |
| CTGCAGGTCAAGGCTGATTT+TGG | 0.138857 | 7_4:+62033485 | Msa1169090:intron |
| TACTGGTGATGTTTCTAAAA+AGG | 0.173626 | 7_4:+62033247 | Msa1169090:five_prime_UTR |
| TCGGATTAACCAACACAATT+AGG | 0.275265 | 7_4:+62033181 | Msa1169090:five_prime_UTR |
| CAGTGTGCATATTGATTTAG+AGG | 0.321280 | 7_4:+62033802 | Msa1169090:CDS |
| TGAGTTGAGAAGGTTGAATA+AGG | 0.323601 | 7_4:+62032980 | Msa1169090:five_prime_UTR |
| CACTTGTAGGCTCTCTTCTA+TGG | 0.338739 | 7_4:+62033028 | Msa1169090:five_prime_UTR |
| ACAATTACTCGTGCTATTAT+GGG | 0.418679 | 7_4:+62033853 | Msa1169090:CDS |
| TTAACTTAAATCATACTGAT+AGG | 0.430639 | 7_4:+62033356 | Msa1169090:CDS |
| AACCAACACAATTAGGCTCT+TGG | 0.438251 | 7_4:+62033188 | Msa1169090:five_prime_UTR |
| GATAAGAGGAAGCGGTGAAG+GGG | 0.453973 | 7_4:+62032913 | None:intergenic |
| TTGTAATAGAAGATATGAAT+AGG | 0.461497 | 7_4:+62033152 | Msa1169090:five_prime_UTR |
| GAAGTAAATGTAAAGGAAGA+AGG | 0.468064 | 7_4:+62033776 | Msa1169090:CDS |
| AGCCTTGCTCTGCAAATACT+TGG | 0.488191 | 7_4:-62033528 | None:intergenic |
| AGATAAGAGGAAGCGGTGAA+GGG | 0.491215 | 7_4:+62032912 | None:intergenic |
| AGATATGAATAGGCTCTCTT+CGG | 0.510356 | 7_4:+62033162 | Msa1169090:five_prime_UTR |
| AGAAGAGGAACCTCACTTGT+AGG | 0.517175 | 7_4:+62033015 | Msa1169090:five_prime_UTR |
| GTCCAAGTATTTGCAGAGCA+AGG | 0.527011 | 7_4:+62033526 | Msa1169090:CDS |
| AGCCAAGAGCCTAATTGTGT+TGG | 0.531992 | 7_4:-62033190 | None:intergenic |
| TTACTGAGTTGGACTTAAAG+TGG | 0.536061 | 7_4:+62033300 | Msa1169090:five_prime_UTR |
| ATAAGAGGAAGCGGTGAAGG+GGG | 0.538898 | 7_4:+62032914 | None:intergenic |
| TTGAAGTTGTTGAGTTGAGA+AGG | 0.559117 | 7_4:+62032970 | Msa1169090:five_prime_UTR |
| GAGCAAAGAAGTAAATGTAA+AGG | 0.561628 | 7_4:+62033769 | Msa1169090:CDS |
| TGTATGCTATCTTACTGAGT+TGG | 0.580470 | 7_4:+62033289 | Msa1169090:five_prime_UTR |
| AGGAGCTGCATATGTAGAAG+AGG | 0.591272 | 7_4:+62033000 | Msa1169090:five_prime_UTR |
| ATGATTTAAGTTAATAACCA+TGG | 0.599391 | 7_4:-62033347 | None:intergenic |
| TCATACTGATAGGACAGTGA+TGG | 0.631868 | 7_4:+62033366 | Msa1169090:CDS |
| TAGAAGAGAGCCTACAAGTG+AGG | 0.633933 | 7_4:-62033025 | None:intergenic |
| TAGTTGTGCCTGCCAAAACA+CGG | 0.641537 | 7_4:-62033226 | None:intergenic |
| AGCAGAACATGCAATGAGTG+CGG | 0.674542 | 7_4:+62033736 | Msa1169090:CDS |
| TAACTTGCTGAGAAATACCA+TGG | 0.684621 | 7_4:+62033330 | Msa1169090:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAATAGAAGATATGAAT+AGG | + | chr7_4:62033152-62033171 | Msa1169090:five_prime_UTR | 20.0% |
| !!! | ATGATTTAAGTTAATAACCA+TGG | - | chr7_4:62033350-62033369 | None:intergenic | 20.0% |
| !! | TTAACTTAAATCATACTGAT+AGG | + | chr7_4:62033356-62033375 | Msa1169090:CDS | 20.0% |
| !! | TTGTAATAGAAGATATGAAT+AGG | + | chr7_4:62033152-62033171 | Msa1169090:five_prime_UTR | 20.0% |
| !!! | ATGATTTAAGTTAATAACCA+TGG | - | chr7_4:62033350-62033369 | None:intergenic | 20.0% |
| !! | TTAACTTAAATCATACTGAT+AGG | + | chr7_4:62033356-62033375 | Msa1169090:CDS | 20.0% |
| !! | TGACATAATTTCTTTTCTCA+TGG | + | chr7_4:62033120-62033139 | Msa1169090:five_prime_UTR | 25.0% |
| !! | GACATAATTTCTTTTCTCAT+GGG | + | chr7_4:62033121-62033140 | Msa1169090:five_prime_UTR | 25.0% |
| !! | CTTTGAATGGTAATTCATTT+TGG | - | chr7_4:62033425-62033444 | None:intergenic | 25.0% |
| ! | CAAAATGAATTACCATTCAA+AGG | + | chr7_4:62033423-62033442 | Msa1169090:intron | 25.0% |
| ! | ATTTCTAACTTAATGGTACT+TGG | - | chr7_4:62033555-62033574 | None:intergenic | 25.0% |
| ! | GTTAAAGAAAATTAGAAGAC+TGG | - | chr7_4:62033648-62033667 | None:intergenic | 25.0% |
| !!! | TGTTTTGAAGTCAATGAAAT+TGG | + | chr7_4:62033713-62033732 | Msa1169090:CDS | 25.0% |
| !! | TTTTTCTTTGTTGCAAAACA+TGG | - | chr7_4:62033830-62033849 | None:intergenic | 25.0% |
| !! | TGACATAATTTCTTTTCTCA+TGG | + | chr7_4:62033120-62033139 | Msa1169090:five_prime_UTR | 25.0% |
| !! | GACATAATTTCTTTTCTCAT+GGG | + | chr7_4:62033121-62033140 | Msa1169090:five_prime_UTR | 25.0% |
| !! | CTTTGAATGGTAATTCATTT+TGG | - | chr7_4:62033425-62033444 | None:intergenic | 25.0% |
| ! | CAAAATGAATTACCATTCAA+AGG | + | chr7_4:62033423-62033442 | Msa1169090:intron | 25.0% |
| ! | ATTTCTAACTTAATGGTACT+TGG | - | chr7_4:62033555-62033574 | None:intergenic | 25.0% |
| ! | GTTAAAGAAAATTAGAAGAC+TGG | - | chr7_4:62033648-62033667 | None:intergenic | 25.0% |
| !!! | TGTTTTGAAGTCAATGAAAT+TGG | + | chr7_4:62033713-62033732 | Msa1169090:CDS | 25.0% |
| !! | TTTTTCTTTGTTGCAAAACA+TGG | - | chr7_4:62033830-62033849 | None:intergenic | 25.0% |
| ! | TACTGGTGATGTTTCTAAAA+AGG | + | chr7_4:62033247-62033266 | Msa1169090:five_prime_UTR | 30.0% |
| ! | ACTGGTGATGTTTCTAAAAA+GGG | + | chr7_4:62033248-62033267 | Msa1169090:five_prime_UTR | 30.0% |
| ! | AGTACTTGATAACCTTTGAA+TGG | - | chr7_4:62033438-62033457 | None:intergenic | 30.0% |
| GTACCATTAAGTTAGAAATG+CGG | + | chr7_4:62033556-62033575 | Msa1169090:intron | 30.0% | |
| TACCATTAAGTTAGAAATGC+GGG | + | chr7_4:62033557-62033576 | Msa1169090:intron | 30.0% | |
| TAAAAAGTAAACAAGCAGCA+AGG | - | chr7_4:62033597-62033616 | None:intergenic | 30.0% | |
| !!! | TTGCTGCTTGTTTACTTTTT+AGG | + | chr7_4:62033596-62033615 | Msa1169090:intron | 30.0% |
| GAGCAAAGAAGTAAATGTAA+AGG | + | chr7_4:62033769-62033788 | Msa1169090:CDS | 30.0% | |
| GAAGTAAATGTAAAGGAAGA+AGG | + | chr7_4:62033776-62033795 | Msa1169090:CDS | 30.0% | |
| ! | TACAATTACTCGTGCTATTA+TGG | + | chr7_4:62033852-62033871 | Msa1169090:CDS | 30.0% |
| ! | ACAATTACTCGTGCTATTAT+GGG | + | chr7_4:62033853-62033872 | Msa1169090:CDS | 30.0% |
| ! | TACTGGTGATGTTTCTAAAA+AGG | + | chr7_4:62033247-62033266 | Msa1169090:five_prime_UTR | 30.0% |
| ! | ACTGGTGATGTTTCTAAAAA+GGG | + | chr7_4:62033248-62033267 | Msa1169090:five_prime_UTR | 30.0% |
| ! | AGTACTTGATAACCTTTGAA+TGG | - | chr7_4:62033438-62033457 | None:intergenic | 30.0% |
| GTACCATTAAGTTAGAAATG+CGG | + | chr7_4:62033556-62033575 | Msa1169090:intron | 30.0% | |
| TACCATTAAGTTAGAAATGC+GGG | + | chr7_4:62033557-62033576 | Msa1169090:intron | 30.0% | |
| TAAAAAGTAAACAAGCAGCA+AGG | - | chr7_4:62033597-62033616 | None:intergenic | 30.0% | |
| !!! | TTGCTGCTTGTTTACTTTTT+AGG | + | chr7_4:62033596-62033615 | Msa1169090:intron | 30.0% |
| GAGCAAAGAAGTAAATGTAA+AGG | + | chr7_4:62033769-62033788 | Msa1169090:CDS | 30.0% | |
| GAAGTAAATGTAAAGGAAGA+AGG | + | chr7_4:62033776-62033795 | Msa1169090:CDS | 30.0% | |
| ! | TACAATTACTCGTGCTATTA+TGG | + | chr7_4:62033852-62033871 | Msa1169090:CDS | 30.0% |
| ! | ACAATTACTCGTGCTATTAT+GGG | + | chr7_4:62033853-62033872 | Msa1169090:CDS | 30.0% |
| !! | TTGAAGTTGTTGAGTTGAGA+AGG | + | chr7_4:62032970-62032989 | Msa1169090:five_prime_UTR | 35.0% |
| ! | TGAGTTGAGAAGGTTGAATA+AGG | + | chr7_4:62032980-62032999 | Msa1169090:five_prime_UTR | 35.0% |
| AGATATGAATAGGCTCTCTT+CGG | + | chr7_4:62033162-62033181 | Msa1169090:five_prime_UTR | 35.0% | |
| TCGGATTAACCAACACAATT+AGG | + | chr7_4:62033181-62033200 | Msa1169090:five_prime_UTR | 35.0% | |
| !! | TTTTGATTGATGCCGTGTTT+TGG | + | chr7_4:62033214-62033233 | Msa1169090:five_prime_UTR | 35.0% |
| ! | ATGTTTCTAAAAAGGGTCGA+TGG | + | chr7_4:62033255-62033274 | Msa1169090:five_prime_UTR | 35.0% |
| TGTATGCTATCTTACTGAGT+TGG | + | chr7_4:62033289-62033308 | Msa1169090:five_prime_UTR | 35.0% | |
| ! | TTACTGAGTTGGACTTAAAG+TGG | + | chr7_4:62033300-62033319 | Msa1169090:five_prime_UTR | 35.0% |
| !! | TAACTTGCTGAGAAATACCA+TGG | + | chr7_4:62033330-62033349 | Msa1169090:exon | 35.0% |
| TTTGGACAGAGTAAACTTCA+AGG | - | chr7_4:62033407-62033426 | None:intergenic | 35.0% | |
| AACCCGCATTTCTAACTTAA+TGG | - | chr7_4:62033562-62033581 | None:intergenic | 35.0% | |
| !! | CAGTGTGCATATTGATTTAG+AGG | + | chr7_4:62033802-62033821 | Msa1169090:CDS | 35.0% |
| !! | TTGAAGTTGTTGAGTTGAGA+AGG | + | chr7_4:62032970-62032989 | Msa1169090:five_prime_UTR | 35.0% |
| ! | TGAGTTGAGAAGGTTGAATA+AGG | + | chr7_4:62032980-62032999 | Msa1169090:five_prime_UTR | 35.0% |
| AGATATGAATAGGCTCTCTT+CGG | + | chr7_4:62033162-62033181 | Msa1169090:five_prime_UTR | 35.0% | |
| TCGGATTAACCAACACAATT+AGG | + | chr7_4:62033181-62033200 | Msa1169090:five_prime_UTR | 35.0% | |
| !! | TTTTGATTGATGCCGTGTTT+TGG | + | chr7_4:62033214-62033233 | Msa1169090:five_prime_UTR | 35.0% |
| ! | ATGTTTCTAAAAAGGGTCGA+TGG | + | chr7_4:62033255-62033274 | Msa1169090:five_prime_UTR | 35.0% |
| TGTATGCTATCTTACTGAGT+TGG | + | chr7_4:62033289-62033308 | Msa1169090:five_prime_UTR | 35.0% | |
| ! | TTACTGAGTTGGACTTAAAG+TGG | + | chr7_4:62033300-62033319 | Msa1169090:five_prime_UTR | 35.0% |
| !! | TAACTTGCTGAGAAATACCA+TGG | + | chr7_4:62033330-62033349 | Msa1169090:exon | 35.0% |
| TTTGGACAGAGTAAACTTCA+AGG | - | chr7_4:62033407-62033426 | None:intergenic | 35.0% | |
| AACCCGCATTTCTAACTTAA+TGG | - | chr7_4:62033562-62033581 | None:intergenic | 35.0% | |
| !! | CAGTGTGCATATTGATTTAG+AGG | + | chr7_4:62033802-62033821 | Msa1169090:CDS | 35.0% |
| AACCAACACAATTAGGCTCT+TGG | + | chr7_4:62033188-62033207 | Msa1169090:five_prime_UTR | 40.0% | |
| TCATACTGATAGGACAGTGA+TGG | + | chr7_4:62033366-62033385 | Msa1169090:CDS | 40.0% | |
| CAGTAGAGGATAGGCAAATT+GGG | - | chr7_4:62033468-62033487 | None:intergenic | 40.0% | |
| AACCAACACAATTAGGCTCT+TGG | + | chr7_4:62033188-62033207 | Msa1169090:five_prime_UTR | 40.0% | |
| TCATACTGATAGGACAGTGA+TGG | + | chr7_4:62033366-62033385 | Msa1169090:CDS | 40.0% | |
| CAGTAGAGGATAGGCAAATT+GGG | - | chr7_4:62033468-62033487 | None:intergenic | 40.0% | |
| AGGAGCTGCATATGTAGAAG+AGG | + | chr7_4:62033000-62033019 | Msa1169090:five_prime_UTR | 45.0% | |
| AGAAGAGGAACCTCACTTGT+AGG | + | chr7_4:62033015-62033034 | Msa1169090:five_prime_UTR | 45.0% | |
| TAGAAGAGAGCCTACAAGTG+AGG | - | chr7_4:62033028-62033047 | None:intergenic | 45.0% | |
| CACTTGTAGGCTCTCTTCTA+TGG | + | chr7_4:62033028-62033047 | Msa1169090:five_prime_UTR | 45.0% | |
| AGCCAAGAGCCTAATTGTGT+TGG | - | chr7_4:62033193-62033212 | None:intergenic | 45.0% | |
| TAGTTGTGCCTGCCAAAACA+CGG | - | chr7_4:62033229-62033248 | None:intergenic | 45.0% | |
| GCAGTAGAGGATAGGCAAAT+TGG | - | chr7_4:62033469-62033488 | None:intergenic | 45.0% | |
| ATTTGCCTATCCTCTACTGC+AGG | + | chr7_4:62033469-62033488 | Msa1169090:intron | 45.0% | |
| !! | TGCAGGTCAAGGCTGATTTT+GGG | + | chr7_4:62033486-62033505 | Msa1169090:intron | 45.0% |
| GTCCAAGTATTTGCAGAGCA+AGG | + | chr7_4:62033526-62033545 | Msa1169090:CDS | 45.0% | |
| AGCCTTGCTCTGCAAATACT+TGG | - | chr7_4:62033531-62033550 | None:intergenic | 45.0% | |
| AGCAGAACATGCAATGAGTG+CGG | + | chr7_4:62033736-62033755 | Msa1169090:CDS | 45.0% | |
| ! | CGTGCTATTATGGGTAGAGT+AGG | + | chr7_4:62033862-62033881 | Msa1169090:CDS | 45.0% |
| AGGAGCTGCATATGTAGAAG+AGG | + | chr7_4:62033000-62033019 | Msa1169090:five_prime_UTR | 45.0% | |
| AGAAGAGGAACCTCACTTGT+AGG | + | chr7_4:62033015-62033034 | Msa1169090:five_prime_UTR | 45.0% | |
| TAGAAGAGAGCCTACAAGTG+AGG | - | chr7_4:62033028-62033047 | None:intergenic | 45.0% | |
| CACTTGTAGGCTCTCTTCTA+TGG | + | chr7_4:62033028-62033047 | Msa1169090:five_prime_UTR | 45.0% | |
| AGCCAAGAGCCTAATTGTGT+TGG | - | chr7_4:62033193-62033212 | None:intergenic | 45.0% | |
| TAGTTGTGCCTGCCAAAACA+CGG | - | chr7_4:62033229-62033248 | None:intergenic | 45.0% | |
| GCAGTAGAGGATAGGCAAAT+TGG | - | chr7_4:62033469-62033488 | None:intergenic | 45.0% | |
| ATTTGCCTATCCTCTACTGC+AGG | + | chr7_4:62033469-62033488 | Msa1169090:intron | 45.0% | |
| !! | TGCAGGTCAAGGCTGATTTT+GGG | + | chr7_4:62033486-62033505 | Msa1169090:intron | 45.0% |
| GTCCAAGTATTTGCAGAGCA+AGG | + | chr7_4:62033526-62033545 | Msa1169090:CDS | 45.0% | |
| AGCCTTGCTCTGCAAATACT+TGG | - | chr7_4:62033531-62033550 | None:intergenic | 45.0% | |
| AGCAGAACATGCAATGAGTG+CGG | + | chr7_4:62033736-62033755 | Msa1169090:CDS | 45.0% | |
| !!! | GATTGATGCCGTGTTTTGGC+AGG | + | chr7_4:62033218-62033237 | Msa1169090:five_prime_UTR | 50.0% |
| !! | GTTTTGGCAGGCACAACTAC+TGG | + | chr7_4:62033230-62033249 | Msa1169090:five_prime_UTR | 50.0% |
| CTTGACCTGCAGTAGAGGAT+AGG | - | chr7_4:62033477-62033496 | None:intergenic | 50.0% | |
| CTATCCTCTACTGCAGGTCA+AGG | + | chr7_4:62033475-62033494 | Msa1169090:intron | 50.0% | |
| !! | CTGCAGGTCAAGGCTGATTT+TGG | + | chr7_4:62033485-62033504 | Msa1169090:intron | 50.0% |
| !!! | GATTGATGCCGTGTTTTGGC+AGG | + | chr7_4:62033218-62033237 | Msa1169090:five_prime_UTR | 50.0% |
| !! | GTTTTGGCAGGCACAACTAC+TGG | + | chr7_4:62033230-62033249 | Msa1169090:five_prime_UTR | 50.0% |
| CTTGACCTGCAGTAGAGGAT+AGG | - | chr7_4:62033477-62033496 | None:intergenic | 50.0% | |
| CTATCCTCTACTGCAGGTCA+AGG | + | chr7_4:62033475-62033494 | Msa1169090:intron | 50.0% | |
| !! | CTGCAGGTCAAGGCTGATTT+TGG | + | chr7_4:62033485-62033504 | Msa1169090:intron | 50.0% |
| TCAGCCTTGACCTGCAGTAG+AGG | - | chr7_4:62033482-62033501 | None:intergenic | 55.0% | |
| TCAGCCTTGACCTGCAGTAG+AGG | - | chr7_4:62033482-62033501 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 62032927 | 62033883 | 62032927 | ID=Msa1169090;Name=Msa1169090 |
| chr7_4 | mRNA | 62032927 | 62033883 | 62032927 | ID=Msa1169090-mRNA-1;Parent=Msa1169090;Name=Msa1169090-mRNA-1;_AED=0.44;_eAED=0.44;_QI=422|0.5|0.33|1|0.5|0.66|3|0|112 |
| chr7_4 | exon | 62032927 | 62033387 | 62032927 | ID=Msa1169090-mRNA-1:exon:19592;Parent=Msa1169090-mRNA-1 |
| chr7_4 | exon | 62033491 | 62033555 | 62033491 | ID=Msa1169090-mRNA-1:exon:19593;Parent=Msa1169090-mRNA-1 |
| chr7_4 | exon | 62033649 | 62033883 | 62033649 | ID=Msa1169090-mRNA-1:exon:19594;Parent=Msa1169090-mRNA-1 |
| chr7_4 | five_prime_UTR | 62032927 | 62033348 | 62032927 | ID=Msa1169090-mRNA-1:five_prime_utr;Parent=Msa1169090-mRNA-1 |
| chr7_4 | CDS | 62033349 | 62033387 | 62033349 | ID=Msa1169090-mRNA-1:cds;Parent=Msa1169090-mRNA-1 |
| chr7_4 | CDS | 62033491 | 62033555 | 62033491 | ID=Msa1169090-mRNA-1:cds;Parent=Msa1169090-mRNA-1 |
| chr7_4 | CDS | 62033649 | 62033883 | 62033649 | ID=Msa1169090-mRNA-1:cds;Parent=Msa1169090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
